[med-svn] [SCM] picard-tools branch, master, updated. debian/1.78-1-3-g5f307e8

[Olivier Sallou]

The following commit has been merged in the master branch:
commit c48788a0189910401fb7cfebe1cf588031d15bd6
Merge: c972e98a9fa624de8358c14e10ddb36d50ea6c2d 6eadf5ce5e221683e5618ad4d1827300ee8ba888
Author: Olivier Sallou <olivier.sallou at debian.org>
Date:   Mon Oct 29 08:58:24 2012 +0100

    Merge commit 'upstream/1.79'


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manipulate SAM and BAM files