[med-svn] [SCM] emboss branch, master, updated. debian/6.4.0-2-9-g18e0fe0

[Charles Plessy]

The following commit has been merged in the master branch:
commit 18e0fe0129ee1924255db6ad9f2c3f7dcf1697df
Author: Charles Plessy <plessy at debian.org>
Date:   Fri Sep 14 13:52:03 2012 +0900

    Inspected and documented copyright changes.
    
    git diff upstream/6.4.0 upstream/6.5.0 | grep -i copyright  | grep -v -e UniProt  -e Bleasby -e Williams -e Rice -e Ison -e Gailly -e Adler -e zlib -e Ensembl -e Schuster -e Bruskiewich -e Longden -e Henrikki

diff --git a/debian/copyright b/debian/copyright
index 32fc726..035cf0c 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,12 +1,12 @@
 Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
-Source: ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.4.0.tar.gz
+Source: ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.5.0.tar.gz
 
 Files: *
 Copyright: The EMBOSS developers or their employers.
 License: emboss
  EMBOSS License (http://emboss.sourceforge.net/licence/)
  .
- The AJAX and NUCLEUS libraries are released under the GNU Library General
+ The AJAX and NUCLEUS libraries are released under the GNU Lesser General
  Public Licence.
  .
  The EMBOSS Administrator’s Guide can be copied, distributed and/or modified
@@ -189,6 +189,61 @@ License: not-the-CC-BY-ND-3.0
  The above files, as individual records, are not copyrighted.  The statement is
  for the UniProt as a whole.
 
+Files: ajax/core/ajvarbcf.c
+Copyright: © 2010 Broad Institute
+           © The EMBOSS developers
+License: LGPL-2.1+ and MIT
+ /* @source ajvarbcf ***********************************************************
+ **
+ ** BCF files reading/writing functions
+ **
+ ** @version $Revision: 1.5 $
+ ** @modified 2011 Mahmut Uludag ported from bcftools project (samtools.sf.net)
+ ** @modified $Date: 2012/07/14 14:52:39 $ by $Author: rice $
+ ** @@
+ **
+ ** This library is free software; you can redistribute it and/or
+ ** modify it under the terms of the GNU Lesser General Public
+ ** License as published by the Free Software Foundation; either
+ ** version 2.1 of the License, or (at your option) any later version.
+ **
+ ** This library is distributed in the hope that it will be useful,
+ ** but WITHOUT ANY WARRANTY; without even the implied warranty of
+ ** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ ** Lesser General Public License for more details.
+ **
+ ** You should have received a copy of the GNU Lesser General Public
+ ** License along with this library; if not, write to the Free Software
+ ** Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
+ ** MA  02110-1301,  USA.
+ **
+ ******************************************************************************/
+ .
+ /* The MIT License
+ .
+    Copyright (c) 2010 Broad Institute
+ .
+    Permission is hereby granted, free of charge, to any person obtaining
+    a copy of this software and associated documentation files (the
+    "Software"), to deal in the Software without restriction, including
+    without limitation the rights to use, copy, modify, merge, publish,
+    distribute, sublicense, and/or sell copies of the Software, and to
+    permit persons to whom the Software is furnished to do so, subject to
+    the following conditions:
+ .
+    The above copyright notice and this permission notice shall be
+    included in all copies or substantial portions of the Software.
+ .
+    THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+    EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+    MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+    NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
+    BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
+    ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
+    CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+    SOFTWARE.
+ */
+
 Files: debian/*
 Copyright: the developers
 License: unclear

-- 
The European Molecular Biology Open Software Suite.