[med-svn] r12241 - in trunk/packages/gdcm/trunk/debian: . patches

Mathieu Malaterre malat at alioth.debian.org
Thu Sep 20 12:32:39 UTC 2012


Author: malat
Date: 2012-09-20 12:32:38 +0000 (Thu, 20 Sep 2012)
New Revision: 12241

Removed:
   trunk/packages/gdcm/trunk/debian/gdcm-doc.install
   trunk/packages/gdcm/trunk/debian/patches/activiz.net.patch
   trunk/packages/gdcm/trunk/debian/patches/csharpfixes.patch
   trunk/packages/gdcm/trunk/debian/patches/doxygen_svg.patch
   trunk/packages/gdcm/trunk/debian/patches/fixdoxygeninstall.patch
   trunk/packages/gdcm/trunk/debian/patches/fixgcj.patch
   trunk/packages/gdcm/trunk/debian/patches/fixgcj2.patch
   trunk/packages/gdcm/trunk/debian/patches/fixundef.patch
   trunk/packages/gdcm/trunk/debian/patches/kfreebsdfix.patch
   trunk/packages/gdcm/trunk/debian/patches/removedocfromall.patch
   trunk/packages/gdcm/trunk/debian/patches/removepythonlink.patch
   trunk/packages/gdcm/trunk/debian/patches/removesonamepython.patch
   trunk/packages/gdcm/trunk/debian/patches/removetransitivepython.patch
   trunk/packages/gdcm/trunk/debian/patches/sonameprops.patch
   trunk/packages/gdcm/trunk/debian/patches/stableapi.patch
Modified:
   trunk/packages/gdcm/trunk/debian/changelog
   trunk/packages/gdcm/trunk/debian/control.in
   trunk/packages/gdcm/trunk/debian/gdcm-doc.doc-base
   trunk/packages/gdcm/trunk/debian/gdcm-doc.docs
   trunk/packages/gdcm/trunk/debian/patches/fixhurd.patch
   trunk/packages/gdcm/trunk/debian/patches/linkvtkdoc.patch
   trunk/packages/gdcm/trunk/debian/patches/series
   trunk/packages/gdcm/trunk/debian/patches/toplevelskip.patch
   trunk/packages/gdcm/trunk/debian/rules
Log:
Update for next release

Modified: trunk/packages/gdcm/trunk/debian/changelog
===================================================================
--- trunk/packages/gdcm/trunk/debian/changelog	2012-09-20 08:22:00 UTC (rev 12240)
+++ trunk/packages/gdcm/trunk/debian/changelog	2012-09-20 12:32:38 UTC (rev 12241)
@@ -1,3 +1,22 @@
+gdcm (2.2.1-1) unstable; urgency=low
+
+  * New upstream: 2.2.1
+    Remove patches applied upstream:
+     - removedocfromall.patch
+     - fixgcj.patch
+     - fixgcj2.patch
+     - stableapi.patch
+     - activiz.net.patch
+     - kfreebsdfix.patch
+     - removepythonlink.patch
+     - fixundef.patch
+     - removesonamepython.patch
+     - sonameprops.patch
+     - csharpfixes.patch
+     - removetransitivepython.patch
+
+ -- Mathieu Malaterre <malat at debian.org>  Thu, 20 Sep 2012 11:06:19 +0200
+
 gdcm (2.2.0-13) unstable; urgency=medium
 
   [ Andreas Tille ]

Modified: trunk/packages/gdcm/trunk/debian/control.in
===================================================================
--- trunk/packages/gdcm/trunk/debian/control.in	2012-09-20 08:22:00 UTC (rev 12240)
+++ trunk/packages/gdcm/trunk/debian/control.in	2012-09-20 12:32:38 UTC (rev 12241)
@@ -7,7 +7,7 @@
  Steve M. Robbins <smr at debian.org>
 Build-Depends: debhelper (>= 9), python-all-dev, libvtk-java, pvrg-jpeg,
  uuid-dev, libz-dev, libexpat-dev, doxygen-latex, ghostscript,
- swig (>= 2.0.5), cmake (>= 2.6.2), libvtk5-dev, libcharls-dev, javahelper,
+ swig (>= 2.0.7), cmake (>= 2.6.2), libvtk5-dev, libcharls-dev, javahelper,
  libopenjpeg-dev, graphviz, default-jdk, php5-dev, php5-cli,
  libpoppler-private-dev, libssl-dev, python-vtk, gccxml,
  libactiviz.net-cil [@DEB_MONO_ARCHS@],
@@ -15,7 +15,7 @@
  cli-common-dev (>= 0.8~) [@DEB_MONO_ARCHS@],
  mono-devel (>= 2.10.5) [@DEB_MONO_ARCHS@]
 Build-Depends-Indep: vtk-doc
-Standards-Version: 3.9.3
+Standards-Version: 3.9.4
 X-Python-Version: @PYVER@
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/gdcm/trunk/
 Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/gdcm/trunk/

Modified: trunk/packages/gdcm/trunk/debian/gdcm-doc.doc-base
===================================================================
--- trunk/packages/gdcm/trunk/debian/gdcm-doc.doc-base	2012-09-20 08:22:00 UTC (rev 12240)
+++ trunk/packages/gdcm/trunk/debian/gdcm-doc.doc-base	2012-09-20 12:32:38 UTC (rev 12241)
@@ -9,4 +9,4 @@
 Files: /usr/share/doc/gdcm-doc/html/*
 
 Format: PDF
-Files: /usr/share/doc/gdcm-doc/gdcm-2.2.0.pdf
+Files: /usr/share/doc/gdcm-doc/gdcm-2.2.1.pdf

Modified: trunk/packages/gdcm/trunk/debian/gdcm-doc.docs
===================================================================
--- trunk/packages/gdcm/trunk/debian/gdcm-doc.docs	2012-09-20 08:22:00 UTC (rev 12240)
+++ trunk/packages/gdcm/trunk/debian/gdcm-doc.docs	2012-09-20 12:32:38 UTC (rev 12241)
@@ -1,2 +1,2 @@
 usr/share/doc/gdcm-*/html/
-usr/share/doc/gdcm-*/gdcm-2.2.0.pdf
+usr/share/doc/gdcm-*/gdcm-2.2.1.pdf

Deleted: trunk/packages/gdcm/trunk/debian/gdcm-doc.install
===================================================================
--- trunk/packages/gdcm/trunk/debian/gdcm-doc.install	2012-09-20 08:22:00 UTC (rev 12240)
+++ trunk/packages/gdcm/trunk/debian/gdcm-doc.install	2012-09-20 12:32:38 UTC (rev 12241)
@@ -1,2 +0,0 @@
-usr/share/doc/gdcm-*/html
-usr/share/doc/gdcm-*/gdcm-2.2.0.pdf

Deleted: trunk/packages/gdcm/trunk/debian/patches/activiz.net.patch
===================================================================
--- trunk/packages/gdcm/trunk/debian/patches/activiz.net.patch	2012-09-20 08:22:00 UTC (rev 12240)
+++ trunk/packages/gdcm/trunk/debian/patches/activiz.net.patch	2012-09-20 12:32:38 UTC (rev 12241)
@@ -1,751 +0,0 @@
-Index: gdcm-2.2.0/Utilities/VTK/CMakeLists.txt
-===================================================================
---- gdcm-2.2.0.orig/Utilities/VTK/CMakeLists.txt	2012-01-24 11:55:34.000000000 +0100
-+++ gdcm-2.2.0/Utilities/VTK/CMakeLists.txt	2012-01-24 11:56:43.000000000 +0100
-@@ -126,28 +126,7 @@
- #ENDIF(NOT VTK_BUILD_SHARED_LIBS AND GDCM_BUILD_SHARED_LIBS)
- 
- SET_TARGET_PROPERTIES(${VTKGDCM_NAME} PROPERTIES ${GDCM_LIBRARY_PROPERTIES})
--IF(GDCM_USE_ACTIVIZ AND UNIX)
--  # the following only works with Activiz VTK 5.4.2. The pure VTK lib are now shipped as separate libs.
--  # so one can safely link to them, instead of having to build a VTK by hand, link vtkgdcm to it
--  # and hope compiler configuration are compatible.
--  # if you use Activiz/VTK 5.2.1 you are on your own (see gdcm 2.0.12 which supports Activiz 5.2.1)
--  FIND_PACKAGE(ACTIVIZ REQUIRED)
--  #message(${ACTIVIZ_KITWARE_VTK_LIBRARY})
--  get_filename_component(bla ${ACTIVIZ_KITWARE_VTK_LIBRARY}
--    PATH)
--
--  #LINK_DIRECTORIES(${bla})
--  #TARGET_LINK_LIBRARIES(${VTKGDCM_NAME} gdcmMSFF
--  #  ${bla}/libvtkCommon.so
--  #  #${bla}/libvtkIO.so
--  #  ${bla}/libvtkImaging.so
--  #  ${bla}/libvtkRendering.so
--  #  )
--  TARGET_LINK_LIBRARIES(${VTKGDCM_NAME} gdcmMSFF ${vtkgdcm_LIBS})
--ELSE(GDCM_USE_ACTIVIZ AND UNIX)
--  TARGET_LINK_LIBRARIES(${VTKGDCM_NAME} gdcmMSFF ${vtkgdcm_LIBS})
--ENDIF(GDCM_USE_ACTIVIZ AND UNIX)
--
-+TARGET_LINK_LIBRARIES(${VTKGDCM_NAME} gdcmMSFF ${vtkgdcm_LIBS})
- # prevent viral dep of vtkgdcm
- SET_PROPERTY(TARGET ${VTKGDCM_NAME} PROPERTY LINK_INTERFACE_LIBRARIES "")
- IF(NOT GDCM_INSTALL_NO_LIBRARIES)
-@@ -182,10 +161,10 @@
-     MESSAGE(FATAL_ERROR "you need a newer VTK version >= 5.0")
-   ENDIF( "${VTK_MAJOR_VERSION}.${VTK_MINOR_VERSION}" LESS 4.5 )
- 
--FIND_PACKAGE(PHP5 REQUIRED)
--INCLUDE_DIRECTORIES(
--  ${PHP5_INCLUDE_PATH}
--)
-+  FIND_PACKAGE(PHP5 REQUIRED)
-+  INCLUDE_DIRECTORIES(
-+    ${PHP5_INCLUDE_PATH}
-+    )
- 
-   FIND_PACKAGE(SWIG REQUIRED)
-   MARK_AS_ADVANCED(SWIG_DIR SWIG_EXECUTABLE SWIG_VERSION)
-@@ -249,69 +228,346 @@
-   IF(GDCM_USE_ACTIVIZ)
-     FIND_PACKAGE(ACTIVIZ REQUIRED)
-   ELSE(GDCM_USE_ACTIVIZ)
--    MESSAGE("You are using the SWIG version of VTKGDCM. This is not compatible with Activiz")
-+    MESSAGE(STATUS "You are using the SWIG version of VTKGDCM. This is not compatible with Activiz")
-+    FIND_PACKAGE(SWIG REQUIRED)
-+    MARK_AS_ADVANCED(SWIG_DIR SWIG_EXECUTABLE SWIG_VERSION)
-+    INCLUDE(${SWIG_USE_FILE})
-+    SET_SOURCE_FILES_PROPERTIES(vtkgdcm.i PROPERTIES CPLUSPLUS ON)
-+    #SET_SOURCE_FILES_PROPERTIES(vtkgdcm.i PROPERTIES COMPILE_FLAGS -DUSEACTIVIZ)
-   ENDIF(GDCM_USE_ACTIVIZ)
--  FIND_PACKAGE(SWIG REQUIRED)
--  MARK_AS_ADVANCED(SWIG_DIR SWIG_EXECUTABLE SWIG_VERSION)
--  INCLUDE(${SWIG_USE_FILE})
--  SET_SOURCE_FILES_PROPERTIES(vtkgdcm.i PROPERTIES CPLUSPLUS ON)
--  #SET_SOURCE_FILES_PROPERTIES(vtkgdcm.i PROPERTIES COMPILE_FLAGS -DUSEACTIVIZ)
-   IF(GDCM_USE_ACTIVIZ)
--  SET(CMAKE_SWIG_FLAGS "-namespace vtkgdcm -dllimport vtkgdcmsharpglue -DUSEACTIVIZ")
-+    #SET(CMAKE_SWIG_FLAGS "-namespace vtkgdcm -dllimport vtkgdcmsharpglue -DUSEACTIVIZ")
-   ELSE(GDCM_USE_ACTIVIZ)
--  SET(CMAKE_SWIG_FLAGS "-namespace vtkgdcm -dllimport vtkgdcmsharpglue")
-+    SET(CMAKE_SWIG_FLAGS "-namespace vtkgdcm -dllimport vtkgdcmsharpglue")
-+    SEPARATE_ARGUMENTS(CMAKE_SWIG_FLAGS)
-+    SWIG_ADD_MODULE(vtkgdcmsharpglue csharp vtkgdcm.i)
-+    SWIG_LINK_LIBRARIES(vtkgdcmsharpglue vtkgdcm)
-+    # Stupid cmake-swig module is doing that for us, when not needed
-+    IF(UNIX)
-+      SET_TARGET_PROPERTIES(${SWIG_MODULE_vtkgdcmsharpglue_REAL_NAME} PROPERTIES PREFIX "lib")
-+    ENDIF(UNIX)
-+    IF(NOT GDCM_INSTALL_NO_LIBRARIES)
-+      INSTALL(TARGETS ${SWIG_MODULE_vtkgdcmsharpglue_REAL_NAME}
-+        EXPORT ${GDCM_TARGETS_NAME}
-+        RUNTIME DESTINATION ${GDCM_INSTALL_BIN_DIR} COMPONENT Applications
-+        LIBRARY DESTINATION ${GDCM_INSTALL_LIB_DIR} COMPONENT Libraries #${NAMELINK_SKIP}
-+        ARCHIVE DESTINATION ${GDCM_INSTALL_LIB_DIR} COMPONENT Development
-+        )
-+    ENDIF(NOT GDCM_INSTALL_NO_LIBRARIES)
-   ENDIF(GDCM_USE_ACTIVIZ)
--  SEPARATE_ARGUMENTS(CMAKE_SWIG_FLAGS)
--  SWIG_ADD_MODULE(vtkgdcmsharpglue csharp vtkgdcm.i)
--  SWIG_LINK_LIBRARIES(vtkgdcmsharpglue vtkgdcm)
--  # Stupid cmake-swig module is doing that for us, when not needed
--  IF(UNIX)
--    SET_TARGET_PROPERTIES(${SWIG_MODULE_vtkgdcmsharpglue_REAL_NAME} PROPERTIES PREFIX "lib")
--  ENDIF(UNIX)
- 
--IF(NOT GDCM_INSTALL_NO_LIBRARIES)
--  INSTALL(TARGETS ${SWIG_MODULE_vtkgdcmsharpglue_REAL_NAME}
--      EXPORT ${GDCM_TARGETS_NAME}
--    RUNTIME DESTINATION ${GDCM_INSTALL_BIN_DIR} COMPONENT Applications
--    LIBRARY DESTINATION ${GDCM_INSTALL_LIB_DIR} COMPONENT Libraries #${NAMELINK_SKIP}
--    ARCHIVE DESTINATION ${GDCM_INSTALL_LIB_DIR} COMPONENT Development
--  )
--#if(NAMELINK_ONLY)
--#  INSTALL(TARGETS ${SWIG_MODULE_vtkgdcmsharpglue_REAL_NAME}
--#    LIBRARY DESTINATION ${GDCM_INSTALL_LIB_DIR} COMPONENT Development ${NAMELINK_ONLY}
--#  )
--#  endif(NAMELINK_ONLY)
--
--ENDIF(NOT GDCM_INSTALL_NO_LIBRARIES)
--  CONFIGURE_FILE(
--    ${CMAKE_CURRENT_SOURCE_DIR}/AssemblyInfo.cs.in
--    ${CMAKE_CURRENT_BINARY_DIR}/AssemblyInfo.cs
--    @ONLY)
-   CONFIGURE_FILE(
-     ${GDCM_SOURCE_DIR}/Wrapping/Csharp/key.snk
-     ${CMAKE_CURRENT_BINARY_DIR}/key.snk
-     COPYONLY)
-+
-   IF(GDCM_USE_ACTIVIZ)
--  ADD_CUSTOM_COMMAND(
--    OUTPUT ${GDCM_LIBRARY_DIR}/vtkgdcm-sharp.dll
--    COMMAND ${CMAKE_CSHARP_COMPILER} ARGS "/r:${ACTIVIZ_KITWARE_VTK_LIBRARY}" "/r:${ACTIVIZ_KITWARE_MUMMY_RUNTIME_LIBRARY}" "/t:library" "/out:${GDCM_LIBRARY_DIR}/vtkgdcm-sharp.dll" "*.cs"
--    #COMMAND ${CMAKE_CSHARP_COMPILER} ARGS "/t:library" "/out:${GDCM_LIBRARY_DIR}/vtkgdcm-sharp.dll" "*.cs"
--    WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
--    DEPENDS "${swig_generated_file_fullname}"
--      ${CMAKE_CURRENT_BINARY_DIR}/AssemblyInfo.cs
--    COMMENT "csc *.cs"
--  )
-+    FIND_PACKAGE(Mummy REQUIRED)
-+    IF(NOT Mummy_BASE_DIR)
-+      MESSAGE(FATAL_ERROR "error: Mummy_BASE_DIR not defined. Please set Mummy_DIR to the directory containing MummyConfig.cmake")
-+    ENDIF(NOT Mummy_BASE_DIR)
-+    INCLUDE("${Mummy_DIR}/MummyCMakeMacros.cmake")
-+    IF(NOT mummy_EXECUTABLE)
-+      FIND_PROGRAM(mummy_EXECUTABLE mummy)
-+    ENDIF(NOT mummy_EXECUTABLE)
-+    IF(NOT mummy_EXECUTABLE)
-+      MESSAGE(FATAL_ERROR "error: mummy not found. mummy_EXECUTABLE='${mummy_EXECUTABLE}'")
-+    ENDIF(NOT mummy_EXECUTABLE)
-+
-+    IF(NOT gccxml_EXECUTABLE)
-+      FIND_PROGRAM(gccxml_EXECUTABLE gccxml)
-+    ENDIF(NOT gccxml_EXECUTABLE)
-+    IF(NOT gccxml_EXECUTABLE)
-+      MESSAGE(FATAL_ERROR "error: gccxml not found. gccxml_EXECUTABLE='${gccxml_EXECUTABLE}'")
-+    ENDIF(NOT gccxml_EXECUTABLE)
-+    SET(gccxml_compiler "${CMAKE_CXX_COMPILER}")
-+    IF(MSVC80)
-+      SET(gccxml_compiler "msvc8")
-+    ENDIF(MSVC80)
-+    IF(MSVC90)
-+      SET(gccxml_compiler "msvc9")
-+    ENDIF(MSVC90)
-+    #MESSAGE(STATUS "gccxml_compiler='${gccxml_compiler}'...")
-+    SET(gccxml_include_args "")
-+    FOREACH(dir ${Mummy_INCLUDE_DIRS} ${VTK_INCLUDE_DIRS})
-+      SET(gccxml_include_args ${gccxml_include_args} "-I${dir}")
-+    ENDFOREACH(dir)
-+    CONFIGURE_FILE(
-+      "${CMAKE_CURRENT_SOURCE_DIR}/MummySettings.xml.in"
-+      "${CMAKE_CURRENT_BINARY_DIR}/xml/MummySettings.xml"
-+      @ONLY
-+      )
-+    file(MAKE_DIRECTORY "${CMAKE_CURRENT_BINARY_DIR}/csharp")
-+    file(MAKE_DIRECTORY "${CMAKE_CURRENT_BINARY_DIR}/export-layer")
-+
-+    set(theclasslist
-+      vtkGDCMImageReader
-+      vtkGDCMImageWriter
-+      vtkGDCMMedicalImageProperties
-+      vtkGDCMPolyDataReader
-+      vtkGDCMPolyDataWriter
-+      vtkGDCMTesting
-+      vtkGDCMThreadedImageReader
-+      vtkGDCMThreadedImageReader2
-+      vtkImageColorViewer
-+      vtkImageMapToColors16
-+      vtkImageMapToWindowLevelColors2
-+      #vtkImagePlanarComponentsToComponents
-+      vtkImageRGBToYBR
-+      vtkImageYBRToRGB
-+      vtkLookupTable16
-+      vtkRTStructSetProperties
-+      )
-+    SET(kits gdcm)
-+    # foreach kit
-+    set(kit gdcm)
-+    FOREACH(class ${theclasslist})
-+      IF(NOT VTK_CLASS_WRAP_EXCLUDE_${class})
-+        #SET(header "${VTK_${ukit}_HEADER_DIR}/${class}.h")
-+        SET(header "${CMAKE_CURRENT_SOURCE_DIR}/${class}.h")
-+        SET(cxxclass "${class}")
-+
-+        # handle full paths
-+        IF("${class}" MATCHES "^(\\/|.\\/|.\\\\|.:\\/|.:\\\\)")
-+          SET(header "${class}.h")
-+          STRING(REGEX MATCH "[^/]*$" cxxclass "${class}")
-+
-+          GET_FILENAME_COMPONENT(dir "${header}" PATH)
-+          INCLUDE_DIRECTORIES("${dir}")
-+        ENDIF("${class}" MATCHES "^(\\/|.\\/|.\\\\|.:\\/|.:\\\\)")
-+
-+        SET(abstract 0)
-+        IF(VTK_CLASS_ABSTRACT_${class})
-+          SET(abstract 1)
-+          SET_SOURCE_FILES_PROPERTIES(${header} PROPERTIES ABSTRACT 1)
-+        ENDIF(VTK_CLASS_ABSTRACT_${class})
-+
-+        # Build one master in-memory table so that we don't have to re-do all the
-+        # logic in this nested FOREACH loop later on... Instead we'll simply iterate
-+        # the in-memory table built here:
-+        #
-+        SET(WRAPPED_CLASS_TABLE ${WRAPPED_CLASS_TABLE} "${cxxclass} ${kit} ${abstract} ${header}")
-+
-+
-+        SET(include_source_text "")
-+        STRING(REGEX REPLACE "(.*).h" "\\1.cxx" source "${header}")
-+        IF(EXISTS "${source}")
-+          SET(include_source_text "#include \"${source}\"")
-+        ELSE(EXISTS "${source}")
-+          #MESSAGE(FATAL_ERROR "error: Source file '${source}' does not exist...")
-+        ENDIF(EXISTS "${source}")
-+
-+        CONFIGURE_FILE(
-+          "${CMAKE_CURRENT_SOURCE_DIR}/gccxml.cxx.in"
-+          "${CMAKE_CURRENT_BINARY_DIR}/xml/${cxxclass}_gccxml.cxx"
-+          @ONLY
-+        )
-+
-+        ADD_CUSTOM_COMMAND(
-+          OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/xml/${cxxclass}.xml
-+          COMMAND ${gccxml_EXECUTABLE}
-+          ARGS
-+            -fxml=${CMAKE_CURRENT_BINARY_DIR}/xml/${cxxclass}.xml
-+            -fxml-start=_cable_
-+            ${gccxml_include_args} -DCABLE_CONFIGURATION
-+            --gccxml-compiler ${gccxml_compiler}
-+            ${CMAKE_CURRENT_BINARY_DIR}/xml/${cxxclass}_gccxml.cxx
-+          DEPENDS
-+            ${CMAKE_CURRENT_BINARY_DIR}/xml/${cxxclass}_gccxml.cxx
-+            ${header}
-+            ${gccxml_EXECUTABLE}
-+        )
-+
-+#
-+# *before* custom command re-arranging:
-+#
-+#          OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/csharp/${cxxclass}.cs
-+#            ${CMAKE_CURRENT_BINARY_DIR}/export-layer/${cxxclass}EL.cxx
-+#
-+# Do not list the *.cs or *EL.cxx files as outputs of this custom command.
-+# If you do, the custom command chains out into other targets rather than
-+# being defined solely in the "generate wrappers" custom target.
-+#
-+# The output of this command is the generated sentinel file that the
-+# "generate wrappers" target depends on. The other files are generated as an
-+# intentional "side effect" and after the target is done building, the other
-+# targets that build the generated source code may build... That is controlled
-+# by target level dependencies to reduce complexity.
-+#
-+        ADD_CUSTOM_COMMAND(
-+          OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/csharp/${cxxclass}-sentinel.txt
-+          COMMAND ${mummy_EXECUTABLE}
-+            --suppress-warnings 6005 6006 6009 6010 6012 6013 6015 6016 6017 6018 6019
-+            --settings-file ${CMAKE_CURRENT_BINARY_DIR}/xml/MummySettings.xml
-+            --gccxml-file ${CMAKE_CURRENT_BINARY_DIR}/xml/${cxxclass}.xml
-+            --csharp-file ${CMAKE_CURRENT_BINARY_DIR}/csharp/${cxxclass}.cs
-+            --export-layer-file ${CMAKE_CURRENT_BINARY_DIR}/export-layer/${cxxclass}EL.cxx
-+          COMMAND ${CMAKE_COMMAND} -E touch
-+            ${CMAKE_CURRENT_BINARY_DIR}/csharp/${cxxclass}-sentinel.txt
-+          DEPENDS
-+            ${CMAKE_CURRENT_BINARY_DIR}/xml/${cxxclass}.xml
-+            ${CMAKE_CURRENT_BINARY_DIR}/xml/MummySettings.xml
-+            ${mummy_EXECUTABLE}
-+            ${${cxxclass}_EXTRA_DEPENDENCIES}
-+        )
-+
-+        SET(${kit}_EL_SOURCES ${${kit}_EL_SOURCES} "${CMAKE_CURRENT_BINARY_DIR}/export-layer/${cxxclass}EL.cxx")
-+        SET(ALLKITS_EL_SOURCES ${ALLKITS_EL_SOURCES} "${CMAKE_CURRENT_BINARY_DIR}/export-layer/${cxxclass}EL.cxx")
-+
-+        SET(${kit}_CS_SOURCES ${${kit}_CS_SOURCES} "${CMAKE_CURRENT_BINARY_DIR}/csharp/${cxxclass}.cs")
-+        SET(ALLKITS_CS_SOURCES ${ALLKITS_CS_SOURCES} "${CMAKE_CURRENT_BINARY_DIR}/csharp/${cxxclass}.cs")
-+
-+        SET(${kit}_SENTINELS ${${kit}_SENTINELS} "${CMAKE_CURRENT_BINARY_DIR}/csharp/${cxxclass}-sentinel.txt")
-+        SET(ALLKITS_SENTINELS ${ALLKITS_SENTINELS} "${CMAKE_CURRENT_BINARY_DIR}/csharp/${cxxclass}-sentinel.txt")
-+      ENDIF(NOT VTK_CLASS_WRAP_EXCLUDE_${class})
-+    ENDFOREACH(class)
-+
-+    ADD_CUSTOM_TARGET(
-+      "vtk${kit}GenerateWrappers" ALL
-+      DEPENDS ${${kit}_SENTINELS}
-+      )
-+    SET_SOURCE_FILES_PROPERTIES(
-+      ${ALLKITS_EL_SOURCES}
-+      ${ALLKITS_CS_SOURCES}
-+      PROPERTIES GENERATED 1)
-+
-+    IF(VTK_BUILD_SHARED_LIBS)
-+      SET(MV_ONE_EXPORT_LAYER_DLL 0)
-+    ELSE(VTK_BUILD_SHARED_LIBS)
-+      SET(MV_ONE_EXPORT_LAYER_DLL 1)
-+    ENDIF(VTK_BUILD_SHARED_LIBS)
-+
-+    IF(MV_ONE_EXPORT_LAYER_DLL)
-+      message(FATAL_ERROR "Unimplemented")
-+      #SET(AVDN_INSTALL_TARGETS ${AVDN_INSTALL_TARGETS} "Kitware.VTK.Unmanaged")
-+      #ADD_LIBRARY(Kitware.VTK.Unmanaged SHARED ${ALLKITS_EL_SOURCES})
-+      #SET(unmanaged_targets ${unmanaged_targets} "Kitware.VTK.Unmanaged")
-+      #SET(unmanaged_dlls ${unmanaged_dlls} "${CMAKE_SHARED_LIBRARY_PREFIX}Kitware.VTK.Unmanaged${CMAKE_SHARED_LIBRARY_SUFFIX}")
-+      #IF(WIN32)
-+      #  TARGET_LINK_LIBRARIES(Kitware.VTK.Unmanaged "${exe_dir}/Kitware.mummy.Runtime.Unmanaged.lib")
-+      #ELSE(WIN32)
-+      #  TARGET_LINK_LIBRARIES(Kitware.VTK.Unmanaged "${exe_dir}/${CMAKE_SHARED_LIBRARY_PREFIX}Kitware.mummy.Runtime.Unmanaged${CMAKE_SHARED_LIBRARY_SUFFIX}")
-+      #ENDIF(WIN32)
-+      ## TODO -- rename this CopyLibraries here too...
-+      #ADD_DEPENDENCIES(Kitware.VTK.Unmanaged Kitware.mummy.CopyLibraries2)
-+      #FOREACH(kit ${kits})
-+      #  TARGET_LINK_LIBRARIES(Kitware.VTK.Unmanaged vtk${kit})
-+      #  ADD_DEPENDENCIES(Kitware.VTK.Unmanaged "vtk${kit}GenerateWrappers")
-+      #ENDFOREACH(kit)
-+    ELSE(MV_ONE_EXPORT_LAYER_DLL)
-+      INCLUDE_DIRECTORIES(${Mummy_INCLUDE_DIRS})
-+      FOREACH(kit ${kits})
-+        SET(AVDN_INSTALL_TARGETS ${AVDN_INSTALL_TARGETS} "Kitware.VTK.vtk${kit}.Unmanaged")
-+        ADD_LIBRARY(Kitware.VTK.vtk${kit}.Unmanaged SHARED ${${kit}_EL_SOURCES})
-+        SET(unmanaged_targets ${unmanaged_targets} "Kitware.VTK.vtk${kit}.Unmanaged")
-+        SET(unmanaged_dlls ${unmanaged_dlls} "${CMAKE_SHARED_LIBRARY_PREFIX}Kitware.VTK.vtk${kit}.Unmanaged${CMAKE_SHARED_LIBRARY_SUFFIX}")
-+        IF(WIN32)
-+          TARGET_LINK_LIBRARIES(Kitware.VTK.vtk${kit}.Unmanaged "${exe_dir}/Kitware.mummy.Runtime.Unmanaged.lib")
-+        ELSE(WIN32)
-+          TARGET_LINK_LIBRARIES(Kitware.VTK.vtk${kit}.Unmanaged ${Mummy_RUNTIME_LINK_LIBRARIES})
-+        ENDIF(WIN32)
-+        TARGET_LINK_LIBRARIES(Kitware.VTK.vtk${kit}.Unmanaged vtk${kit})
-+        # TODO -- rename this CopyLibraries here too...
-+        ADD_DEPENDENCIES(Kitware.VTK.vtk${kit}.Unmanaged Kitware.mummy.CopyLibraries2)
-+        ADD_DEPENDENCIES(Kitware.VTK.vtk${kit}.Unmanaged "vtk${kit}GenerateWrappers")
-+      ENDFOREACH(kit)
-+    ENDIF(MV_ONE_EXPORT_LAYER_DLL)
-+
-+    set(csc_EXECUTABLE ${CMAKE_CSHARP_COMPILER})
-+    # Set list of export-layer dlls in C# syntax as CMake variable
-+    # MV_EXPORTLAYER_DLL_VARIABLES. This gets configured into
-+    # WrappedObject.cs below.
-+    #
-+    SET(MV_EXPORTLAYER_DLL_VARIABLES "")
-+    FOREACH(kit ${kits})
-+      SET(MV_EXPORTLAYER_DLL_VARIABLES "${MV_EXPORTLAYER_DLL_VARIABLES}    /// <summary>\n")
-+      SET(MV_EXPORTLAYER_DLL_VARIABLES "${MV_EXPORTLAYER_DLL_VARIABLES}    /// Export layer functions for 'vtk${kit}' are exported from\n")
-+      SET(MV_EXPORTLAYER_DLL_VARIABLES "${MV_EXPORTLAYER_DLL_VARIABLES}    /// the DLL named by the value of this variable.\n")
-+      SET(MV_EXPORTLAYER_DLL_VARIABLES "${MV_EXPORTLAYER_DLL_VARIABLES}    /// </summary>\n")
-+
-+      IF(MV_ONE_EXPORT_LAYER_DLL)
-+        SET(MV_EXPORTLAYER_DLL_VARIABLES "${MV_EXPORTLAYER_DLL_VARIABLES}    public const string vtk${kit}EL_dll = \"${CMAKE_SHARED_LIBRARY_PREFIX}Kitware.VTK.Unmanaged${CMAKE_SHARED_LIBRARY_SUFFIX}\";\n")
-+      ELSE(MV_ONE_EXPORT_LAYER_DLL)
-+        SET(MV_EXPORTLAYER_DLL_VARIABLES "${MV_EXPORTLAYER_DLL_VARIABLES}    public const string vtk${kit}EL_dll = \"${CMAKE_SHARED_LIBRARY_PREFIX}Kitware.VTK.vtk${kit}.Unmanaged${CMAKE_SHARED_LIBRARY_SUFFIX}\";\n")
-+      ENDIF(MV_ONE_EXPORT_LAYER_DLL)
-+    ENDFOREACH(kit)
-+
-+    SET(csharp_namespace "Kitware.VTK.GDCM")
-+    CONFIGURE_FILE(
-+      "${CMAKE_CURRENT_SOURCE_DIR}/AssemblyInfo.cs.in"
-+      "${CMAKE_CURRENT_BINARY_DIR}/csharp/AssemblyInfo.cs"
-+      @ONLY
-+      )
-+
-+    SET(ALLKITS_CS_SOURCES
-+      ${ALLKITS_CS_SOURCES}
-+      "${CMAKE_CURRENT_BINARY_DIR}/csharp/AssemblyInfo.cs"
-+      )
-+
-+    SET(AVDN_VTK_CSC_REFS ${ACTIVIZ_KITWARE_VTK_LIBRARY} ${ACTIVIZ_KITWARE_MUMMY_RUNTIME_LIBRARY})
-+    ADD_CSHARP_LIBRARY(
-+      "Kitware.VTK.GDCM" # name of library
-+      "${unmanaged_targets}" # list of CMake targets that need to build first
-+      "${AVDN_VTK_CSC_REFS}" # list of csc "/reference:" args
-+      "${unmanaged_dlls}" # list of csc "/linkresource:" args
-+      "${AVDN_SNKEYFILE}" # strong name signing keyfile
-+      # Source files:
-+      ${ALLKITS_CS_SOURCES}
-+      )
-+
-+    FOREACH(kit ${kits})
-+      ADD_DEPENDENCIES(Kitware.VTK.GDCM "vtk${kit}GenerateWrappers")
-+    ENDFOREACH(kit)
-+
-+    #    ADD_CUSTOM_COMMAND(
-+    #      OUTPUT ${GDCM_LIBRARY_DIR}/vtkgdcm-sharp.dll
-+    #      COMMAND ${CMAKE_CSHARP_COMPILER} ARGS "/r:${ACTIVIZ_KITWARE_VTK_LIBRARY}" "/r:${ACTIVIZ_KITWARE_MUMMY_RUNTIME_LIBRARY}" "/t:library" "/out:${GDCM_LIBRARY_DIR}/vtkgdcm-sharp.dll" "*.cs"
-+    #      #COMMAND ${CMAKE_CSHARP_COMPILER} ARGS "/t:library" "/out:${GDCM_LIBRARY_DIR}/vtkgdcm-sharp.dll" "*.cs"
-+    #      WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
-+    #      DEPENDS "${swig_generated_file_fullname}"
-+    #      ${CMAKE_CURRENT_BINARY_DIR}/AssemblyInfo.cs
-+    #      COMMENT "csc *.cs"
-+    #      )
-+
-+    INSTALL(FILES
-+      ${GDCM_LIBRARY_DIR}/Kitware.VTK.GDCM.dll
-+      ${GDCM_LIBRARY_DIR}/Kitware.VTK.GDCM.xml
-+      DESTINATION ${GDCM_INSTALL_LIB_DIR} COMPONENT VTKCSharpModule
-+      )
-+    INSTALL(TARGETS Kitware.VTK.vtk${kit}.Unmanaged
-+      EXPORT ${GDCM_TARGETS_NAME}
-+      RUNTIME DESTINATION ${GDCM_INSTALL_BIN_DIR} COMPONENT VTKLibraries
-+      LIBRARY DESTINATION ${GDCM_INSTALL_LIB_DIR} COMPONENT VTKLibraries #${NAMELINK_SKIP}
-+      ARCHIVE DESTINATION ${GDCM_INSTALL_LIB_DIR} COMPONENT VTKDevelopment
-+      )
-   ELSE(GDCM_USE_ACTIVIZ)
--  ADD_CUSTOM_COMMAND(
--    OUTPUT ${GDCM_LIBRARY_DIR}/vtkgdcm-sharp.dll
--    #COMMAND ${CMAKE_CSHARP_COMPILER} ARGS "/r:${ACTIVIZ_KITWARE_VTK_LIBRARY}" "/r:${ACTIVIZ_KITWARE_MUMMY_RUNTIME_LIBRARY}" "/t:library" "/out:${GDCM_LIBRARY_DIR}/vtkgdcm-sharp.dll" "*.cs"
--    COMMAND ${CMAKE_CSHARP_COMPILER} ARGS "/t:library" "/out:${GDCM_LIBRARY_DIR}/vtkgdcm-sharp.dll" "*.cs"
--    WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
--    DEPENDS "${swig_generated_file_fullname}"
-+    CONFIGURE_FILE(
-+      ${CMAKE_CURRENT_SOURCE_DIR}/AssemblyInfo.cs.in
-       ${CMAKE_CURRENT_BINARY_DIR}/AssemblyInfo.cs
--    COMMENT "csc *.cs"
--  )
-+      @ONLY)
- 
-+    ADD_CUSTOM_COMMAND(
-+      OUTPUT ${GDCM_LIBRARY_DIR}/vtkgdcm-sharp.dll
-+      COMMAND ${CMAKE_CSHARP_COMPILER} ARGS "/t:library" "/out:${GDCM_LIBRARY_DIR}/vtkgdcm-sharp.dll" "*.cs"
-+      WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
-+      DEPENDS "${swig_generated_file_fullname}"
-+      ${CMAKE_CURRENT_BINARY_DIR}/AssemblyInfo.cs
-+      COMMENT "csc *.cs"
-+      )
-+    ADD_CUSTOM_TARGET(VTKGDCMCSharp ALL
-+      DEPENDS
-+      ${GDCM_LIBRARY_DIR}/vtkgdcm-sharp.dll
-+      #${GDCM_LIBRARY_DIR}/vtkgdcm-sharp.dll.config
-+      #${GDCM_EXECUTABLE_DIR}/HelloWorld.exe
-+      COMMENT "building vtkgdcm-sharp.dll"
-+      )
-+    # because vtkgdcm-sharp.dll is constructed with custom commands, it need the INSTALL(FILES signature:
-+    SET(GDCM_LIBRARY_DIR2 ${LIBRARY_OUTPUT_PATH}/\${BUILD_TYPE})
-+    INSTALL(FILES
-+      ${GDCM_LIBRARY_DIR2}/vtkgdcm-sharp.dll
-+      #${GDCM_LIBRARY_DIR2}/vtkgdcm-sharp.dll.config
-+      DESTINATION ${GDCM_INSTALL_LIB_DIR} COMPONENT VTKCSharpModule
-+      )
-   ENDIF(GDCM_USE_ACTIVIZ)
- 
-   #ADD_CUSTOM_COMMAND(
-@@ -321,22 +577,6 @@
-   #  COMMENT "Copying vtkgdcm-sharp.dll.config"
-   #)
- 
--ADD_CUSTOM_TARGET(VTKGDCMCSharp ALL
--  DEPENDS
--    ${GDCM_LIBRARY_DIR}/vtkgdcm-sharp.dll
--    #${GDCM_LIBRARY_DIR}/vtkgdcm-sharp.dll.config
--    #${GDCM_EXECUTABLE_DIR}/HelloWorld.exe
--  COMMENT "building vtkgdcm-sharp.dll"
--)
--
--  # because vtkgdcm-sharp.dll is constructed with custom commands, it need the INSTALL(FILES signature:
--SET(GDCM_LIBRARY_DIR2 ${LIBRARY_OUTPUT_PATH}/\${BUILD_TYPE})
--  INSTALL(FILES
--    ${GDCM_LIBRARY_DIR2}/vtkgdcm-sharp.dll
--    #${GDCM_LIBRARY_DIR2}/vtkgdcm-sharp.dll.config
--    DESTINATION ${GDCM_INSTALL_LIB_DIR} COMPONENT VTKCSharpModule
--  )
--
- ENDIF(GDCM_WRAP_CSHARP)
- 
- IF(GDCM_WRAP_JAVA)
-@@ -360,7 +600,7 @@
-     endif(EXISTS ${VTK_JAVA_JAR})
-     if(EXISTS /usr/lib/jni/libvtkCommonJava.so)
-       # http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=533198
--      message("Implicitely adding debian package layout...")
-+      message(STATUS "Implicitely adding debian package layout...")
-       link_directories("/usr/lib/jni")
-     endif()
-     MARK_AS_ADVANCED(GDCM_VTK_JAVA_JAR)
-@@ -422,7 +662,7 @@
-     ENDIF(NOT GDCM_INSTALL_NO_LIBRARIES)
- 
-   ELSE(VTK_WRAP_JAVA)
--    MESSAGE("GDCM_WRAP_JAVA canot be build without VTK_WRAP_JAVA")
-+    MESSAGE(STATUS "GDCM_WRAP_JAVA canot be build without VTK_WRAP_JAVA")
-   ENDIF(VTK_WRAP_JAVA)
- ENDIF(GDCM_WRAP_JAVA)
- 
-@@ -491,7 +731,7 @@
-     ENDIF(NOT GDCM_INSTALL_NO_LIBRARIES)
- 
-   ELSE(VTK_WRAP_PYTHON)
--    MESSAGE("GDCM_WRAP_PYTHON canot be build without VTK_WRAP_PYTHON")
-+    MESSAGE(STATUS "GDCM_WRAP_PYTHON canot be build without VTK_WRAP_PYTHON")
-   ENDIF(VTK_WRAP_PYTHON)
- ENDIF(GDCM_WRAP_PYTHON)
- 
-Index: gdcm-2.2.0/Utilities/VTK/CscArgs.txt.in
-===================================================================
---- /dev/null	1970-01-01 00:00:00.000000000 +0000
-+++ gdcm-2.2.0/Utilities/VTK/CscArgs.txt.in	2012-01-24 11:56:43.000000000 +0100
-@@ -0,0 +1 @@
-+ at CscArgs@
-Index: gdcm-2.2.0/Utilities/VTK/dllexportconf.cs
-===================================================================
---- /dev/null	1970-01-01 00:00:00.000000000 +0000
-+++ gdcm-2.2.0/Utilities/VTK/dllexportconf.cs	2012-01-24 11:56:43.000000000 +0100
-@@ -0,0 +1 @@
-+public const string vtkgdcmEL_dll = "libKitware.VTK.vtkgdcm.Unmanaged.so";
-Index: gdcm-2.2.0/Utilities/VTK/gccxml.cxx.in
-===================================================================
---- /dev/null	1970-01-01 00:00:00.000000000 +0000
-+++ gdcm-2.2.0/Utilities/VTK/gccxml.cxx.in	2012-01-24 11:56:43.000000000 +0100
-@@ -0,0 +1,16 @@
-+#include "@header@"
-+
-+#ifdef CABLE_CONFIGURATION
-+namespace _cable_
-+{
-+  const char* const package = "Kitware.VTK.GDCM";
-+  const char* const package_version = "@VTK_MAJOR_VERSION at .@VTK_MINOR_VERSION at .@VTK_BUILD_VERSION@";
-+  const char* const group = "vtk at kit@";
-+
-+  namespace wrappers
-+  {
-+    typedef @cxxclass@ @cxxclass at _W;
-+  }
-+
-+}
-+#endif
-Index: gdcm-2.2.0/Utilities/VTK/MummySettings.xml.in
-===================================================================
---- /dev/null	1970-01-01 00:00:00.000000000 +0000
-+++ gdcm-2.2.0/Utilities/VTK/MummySettings.xml.in	2012-01-24 11:56:43.000000000 +0100
-@@ -0,0 +1,196 @@
-+<MummySettings>
-+
-+  <!-- Individual classes to exclude from wrapped layers -->
-+  <!-- (These VTK classes are not included in the list of wrapped classes
-+       that comes out of VTK's CMake info...) -->
-+
-+  <Class name="vtkAbstractContextBufferId" wrappable="false"/>
-+  <Class name="vtkAMRBox" wrappable="false"/>
-+  <Class name="vtkArrayCoordinates" wrappable="false"/>
-+  <Class name="vtkArrayExtents" wrappable="false"/>
-+  <Class name="vtkArrayRange" wrappable="false"/>
-+  <Class name="vtkBoundingBox" wrappable="false"/>
-+  <Class name="vtkCallbackCommand" wrappable="false"/>
-+  <Class name="vtkColor3ub" wrappable="false"/>
-+  <Class name="vtkColor4ub" wrappable="false"/>
-+  <Class name="vtkContextKeyEvent" wrappable="false"/>
-+  <Class name="vtkContextMouseEvent" wrappable="false"/>
-+  <Class name="vtkContourRepresentationNode" wrappable="false"/>
-+  <Class name="vtkEdgeType" wrappable="false"/>
-+  <Class name="vtkExodusIICacheKey" wrappable="false"/>
-+  <Class name="vtkImageComplex" wrappable="false"/>
-+  <Class name="vtkImageConnectorSeed" wrappable="false"/>
-+  <Class name="vtkIndent" wrappable="false"/>
-+  <Class name="vtkInEdgeType" wrappable="false"/>
-+  <Class name="vtkInterpolationInfo" wrappable="false"/>
-+  <Class name="vtkInterpolationWeights" wrappable="false"/>
-+  <Class name="vtkMultiProcessStream" wrappable="false"/>
-+  <Class name="vtkOBBNode" wrappable="false"/>
-+  <Class name="vtkOutEdgeType" wrappable="false"/>
-+  <Class name="vtkProcessingUnitResource" wrappable="false"/>
-+  <Class name="vtkPolygonalSurfacePointPlacerNode" wrappable="false"/>
-+  <Class name="vtkRectf" wrappable="false"/>
-+  <Class name="vtkRenderState" wrappable="false"/>
-+  <Class name="vtkShader2" wrappable="false"/>
-+  <Class name="vtkShader2Collection" wrappable="false"/>
-+  <Class name="vtkShaderProgram2" wrappable="false"/>
-+  <Class name="vtkShadowMapBakerPassLightCameras" wrappable="false"/>
-+  <Class name="vtkShadowMapBakerPassTextures" wrappable="false"/>
-+  <Class name="vtkStdString" wrappable="false"/>
-+  <Class name="vtkTDxMotionEventInfo" wrappable="false"/>
-+  <Class name="vtkTextureUnitManager" wrappable="false"/>
-+  <Class name="vtkTIFFReaderInternal" wrappable="false"/>
-+  <Class name="vtkTimeStamp" wrappable="false"/>
-+  <Class name="vtkUnicodeString" wrappable="false"/>
-+  <Class name="vtkVariant" wrappable="false"/>
-+  <Class name="vtkVector2f" wrappable="false"/>
-+  <Class name="vtkVector2i" wrappable="false"/>
-+  <Class name="vtkVector3d" wrappable="false"/>
-+  <Class name="vtkVolumeRayCastDynamicInfo" wrappable="false"/>
-+  <Class name="vtkVolumeRayCastStaticInfo" wrappable="false"/>
-+ at AVDN_EXTRA_EXCLUDE_CLASSES_XML@
-+
-+  <!-- Class patterns to exclude from wrapped layers -->
-+
-+  <ClassPattern pattern=".+<.+>" wrappable="false"/>
-+  <ClassPattern pattern="vtk.*::" wrappable="false"/>
-+
-+
-+  <!-- Individual classes to include in wrapped layers -->
-+
-+  <!-- vtkCommand: shadow="true" -->
-+  <Class name="vtkCommand" wrappable="true"
-+    defaultFactoryMethod="New"
-+    defaultDisposalMethod="Delete"
-+    shadow="true"
-+    registerMethod="Register(null)"
-+    unRegisterMethod="UnRegister(null)"
-+    getRefCountMethod="GetReferenceCount()"
-+    registerBaseClass="vtkObjectBase"
-+    registerInclude="#include "vtkObjectBase.h""
-+    wrappedObjectBase="WrappedObject"
-+    beginExcludeRegex="^[\t ]*//BTX.*$"
-+    endExcludeRegex="^[\t ]*//ETX.*$"
-+    countedMethodsRegex="^(CreateInstance|New|NewInstance)$"
-+    emitDefaultFactoryMethod="true"
-+    externalHints="@AVDN_VTK_SOURCE_DIR@/Wrapping/hints"
-+    />
-+
-+  <!-- vtkImageData: extra hand-crafted code -->
-+  <Class name="vtkImageData" wrappable="true"
-+    defaultFactoryMethod="New"
-+    defaultDisposalMethod="Delete"
-+    shadow="false"
-+    extraExportLayerCode="@CMAKE_CURRENT_SOURCE_DIR@/vtkImageDataEL_Extra.cxx"
-+    extraCsharpCode="@CMAKE_CURRENT_SOURCE_DIR@/vtkImageData_Extra.cs"
-+    registerMethod="Register(null)"
-+    unRegisterMethod="UnRegister(null)"
-+    getRefCountMethod="GetReferenceCount()"
-+    registerBaseClass="vtkObjectBase"
-+    registerInclude="#include "vtkObjectBase.h""
-+    wrappedObjectBase="WrappedObject"
-+    beginExcludeRegex="^[\t ]*//BTX.*$"
-+    endExcludeRegex="^[\t ]*//ETX.*$"
-+    countedMethodsRegex="^(CreateInstance|New|NewInstance)$"
-+    emitDefaultFactoryMethod="true"
-+    externalHints="@AVDN_VTK_SOURCE_DIR@/Wrapping/hints"
-+    />
-+
-+  <!-- vtkImplicitFunction: shadow="true" -->
-+  <Class name="vtkImplicitFunction" wrappable="true"
-+    defaultFactoryMethod="New"
-+    defaultDisposalMethod="Delete"
-+    shadow="true"
-+    registerMethod="Register(null)"
-+    unRegisterMethod="UnRegister(null)"
-+    getRefCountMethod="GetReferenceCount()"
-+    registerBaseClass="vtkObjectBase"
-+    registerInclude="#include "vtkObjectBase.h""
-+    wrappedObjectBase="WrappedObject"
-+    beginExcludeRegex="^[\t ]*//BTX.*$"
-+    endExcludeRegex="^[\t ]*//ETX.*$"
-+    countedMethodsRegex="^(CreateInstance|New|NewInstance)$"
-+    emitDefaultFactoryMethod="true"
-+    externalHints="@AVDN_VTK_SOURCE_DIR@/Wrapping/hints"
-+    />
-+
-+  <!-- vtkObject: extra hand-crafted code -->
-+  <Class name="vtkObject" wrappable="true"
-+    defaultFactoryMethod="New"
-+    defaultDisposalMethod="Delete"
-+    shadow="false"
-+    extraExportLayerCode="@CMAKE_CURRENT_BINARY_DIR@/export-layer/vtkObjectEL_Extra.cxx"
-+    extraCsharpCode="@CMAKE_CURRENT_BINARY_DIR@/csharp/vtkObject_Extra.cs"
-+    registerMethod="Register(null)"
-+    unRegisterMethod="UnRegister(null)"
-+    getRefCountMethod="GetReferenceCount()"
-+    registerBaseClass="vtkObjectBase"
-+    registerInclude="#include "vtkObjectBase.h""
-+    wrappedObjectBase="WrappedObject"
-+    beginExcludeRegex="^[\t ]*//BTX.*$"
-+    endExcludeRegex="^[\t ]*//ETX.*$"
-+    countedMethodsRegex="^(CreateInstance|New|NewInstance)$"
-+    emitDefaultFactoryMethod="true"
-+    externalHints="@AVDN_VTK_SOURCE_DIR@/Wrapping/hints"
-+    />
-+
-+  <!-- vtkProgrammableAttributeDataFilter: extra hand-crafted code -->
-+  <Class name="vtkProgrammableAttributeDataFilter" wrappable="true"
-+    defaultFactoryMethod="New"
-+    defaultDisposalMethod="Delete"
-+    shadow="false"
-+    extraExportLayerCode="@CMAKE_CURRENT_SOURCE_DIR@/vtkProgrammableAttributeDataFilterEL_Extra.cxx"
-+    extraCsharpCode="@CMAKE_CURRENT_SOURCE_DIR@/vtkProgrammableAttributeDataFilter_Extra.cs"
-+    registerMethod="Register(null)"
-+    unRegisterMethod="UnRegister(null)"
-+    getRefCountMethod="GetReferenceCount()"
-+    registerBaseClass="vtkObjectBase"
-+    registerInclude="#include "vtkObjectBase.h""
-+    wrappedObjectBase="WrappedObject"
-+    beginExcludeRegex="^[\t ]*//BTX.*$"
-+    endExcludeRegex="^[\t ]*//ETX.*$"
-+    countedMethodsRegex="^(CreateInstance|New|NewInstance)$"
-+    emitDefaultFactoryMethod="true"
-+    externalHints="@AVDN_VTK_SOURCE_DIR@/Wrapping/hints"
-+    />
-+
-+  <!-- vtkStringArray: extra hand-crafted code -->
-+  <Class name="vtkStringArray" wrappable="true"
-+    defaultFactoryMethod="New"
-+    defaultDisposalMethod="Delete"
-+    shadow="false"
-+    extraExportLayerCode="@CMAKE_CURRENT_SOURCE_DIR@/vtkStringArrayEL_Extra.cxx"
-+    extraCsharpCode="@CMAKE_CURRENT_SOURCE_DIR@/vtkStringArray_Extra.cs"
-+    registerMethod="Register(null)"
-+    unRegisterMethod="UnRegister(null)"
-+    getRefCountMethod="GetReferenceCount()"
-+    registerBaseClass="vtkObjectBase"
-+    registerInclude="#include "vtkObjectBase.h""
-+    wrappedObjectBase="WrappedObject"
-+    beginExcludeRegex="^[\t ]*//BTX.*$"
-+    endExcludeRegex="^[\t ]*//ETX.*$"
-+    countedMethodsRegex="^(CreateInstance|New|NewInstance)$"
-+    emitDefaultFactoryMethod="true"
-+    externalHints="@AVDN_VTK_SOURCE_DIR@/Wrapping/hints"
-+    />
-+
-+  <!-- Class patterns to include in wrapped layers -->
-+  <ClassPattern pattern="^vtk" wrappable="true"
-+    defaultFactoryMethod="New"
-+    defaultDisposalMethod="Delete"
-+    extraCsharpCode="@CMAKE_CURRENT_SOURCE_DIR@/dllexportconf.cs"
-+    shadow="false"
-+    registerMethod="Register(null)"
-+    unRegisterMethod="UnRegister(null)"
-+    getRefCountMethod="GetReferenceCount()"
-+    registerBaseClass="vtkObjectBase"
-+    registerInclude="#include "vtkObjectBase.h""
-+    wrappedObjectBase="WrappedObject"
-+    beginExcludeRegex="^[\t ]*//BTX.*$"
-+    endExcludeRegex="^[\t ]*//ETX.*$"
-+    countedMethodsRegex="^(CreateImageReader2|CreateInstance|MakeTransform|New|NewInstance)$"
-+    emitDefaultFactoryMethod="true"
-+    externalHints="@VTK_WRAP_HINTS@"
-+    />
-+
-+</MummySettings>
-Index: gdcm-2.2.0/CMake/FindACTIVIZ.cmake
-===================================================================
---- gdcm-2.2.0.orig/CMake/FindACTIVIZ.cmake	2012-01-24 11:55:34.000000000 +0100
-+++ gdcm-2.2.0/CMake/FindACTIVIZ.cmake	2012-01-24 11:56:43.000000000 +0100
-@@ -15,14 +15,14 @@
- 
- FIND_FILE(ACTIVIZ_KITWARE_VTK_LIBRARY
-   NAMES Kitware.VTK.dll
--  PATHS /usr/lib /usr/local/lib /usr/lib/cli/activiz-cil
-+  PATHS /usr/lib /usr/local/lib /usr/lib/cli/activiz-cil /usr/lib/cli/ActiViz.NET
-   "[HKEY_LOCAL_MACHINE\\SOFTWARE\\Kitware\\ActiVizDotNet 5.2.1]/bin"
-   $ENV{ACTIVIZ_ROOT}/bin
-   )
- 
- FIND_FILE(ACTIVIZ_KITWARE_MUMMY_RUNTIME_LIBRARY
-   NAMES Kitware.mummy.Runtime.dll
--  PATHS /usr/lib /usr/local/lib /usr/lib/cli/activiz-cil
-+  PATHS /usr/lib /usr/local/lib /usr/lib/cli/activiz-cil /usr/lib/cli/Kitware.mummy.Runtime-1.0
-   "[HKEY_LOCAL_MACHINE\\SOFTWARE\\Kitware\\ActiVizDotNet 5.2.1]/bin"
-   $ENV{ACTIVIZ_ROOT}/bin
-   )

Deleted: trunk/packages/gdcm/trunk/debian/patches/csharpfixes.patch
===================================================================
--- trunk/packages/gdcm/trunk/debian/patches/csharpfixes.patch	2012-09-20 08:22:00 UTC (rev 12240)
+++ trunk/packages/gdcm/trunk/debian/patches/csharpfixes.patch	2012-09-20 12:32:38 UTC (rev 12241)
@@ -1,174 +0,0 @@
-Description: <short summary of the patch>
- TODO: Put a short summary on the line above and replace this paragraph
- with a longer explanation of this change. Complete the meta-information
- with other relevant fields (see below for details). To make it easier, the
- information below has been extracted from the changelog. Adjust it or drop
- it.
- .
- gdcm (2.2.0-11) UNRELEASED; urgency=low
- .
-   * Remove SONAME from python module, as per policy
-   * Build PHP5 bindings
-   * Fix issue with python 3.2 vs 2.7
-Author: Mathieu Malaterre <malat at debian.org>
-
----
-The information above should follow the Patch Tagging Guidelines, please
-checkout http://dep.debian.net/deps/dep3/ to learn about the format. Here
-are templates for supplementary fields that you might want to add:
-
-Origin: <vendor|upstream|other>, <url of original patch>
-Bug: <url in upstream bugtracker>
-Bug-Debian: http://bugs.debian.org/<bugnumber>
-Bug-Ubuntu: https://launchpad.net/bugs/<bugnumber>
-Forwarded: <no|not-needed|url proving that it has been forwarded>
-Reviewed-By: <name and email of someone who approved the patch>
-Last-Update: <YYYY-MM-DD>
-
---- /dev/null
-+++ gdcm-2.2.0/Utilities/VTK/vtkGDCMImageReader_Extra.cs
-@@ -0,0 +1,28 @@
-+/*=========================================================================
-+
-+  Program: GDCM (Grassroots DICOM). A DICOM library
-+
-+  Copyright (c) 2006-2011 Mathieu Malaterre
-+  All rights reserved.
-+  See Copyright.txt or http://gdcm.sourceforge.net/Copyright.html for details.
-+
-+     This software is distributed WITHOUT ANY WARRANTY; without even
-+     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
-+     PURPOSE.  See the above copyright notice for more information.
-+
-+=========================================================================*/
-+
-+namespace Kitware.VTK.GDCM
-+{
-+public class vtkgdcm {
-+// FIXME why isn't mummy doing it ?
-+  public static readonly int VTK_LUMINANCE = 1;
-+  public static readonly int VTK_LUMINANCE_ALPHA = 2;
-+  public static readonly int VTK_RGB = 3;
-+  public static readonly int VTK_RGBA = 4;
-+  public static readonly int VTK_INVERSE_LUMINANCE = 5;
-+  public static readonly int VTK_LOOKUP_TABLE = 6;
-+  public static readonly int VTK_YBR = 7;
-+  public static readonly int VTK_CMYK = 8;
-+}
-+}
---- gdcm-2.2.0.orig/Utilities/VTK/CMakeLists.txt
-+++ gdcm-2.2.0/Utilities/VTK/CMakeLists.txt
-@@ -12,11 +12,11 @@ SET(vtkgdcm_SRCS
-   vtkGDCMMedicalImageProperties.cxx
-   )
- 
--IF(GDCM_HAVE_PTHREAD_H)
-+IF(GDCM_HAVE_PTHREAD_H AND CMAKE_USE_PTHREADS)
-   SET(vtkgdcm_SRCS ${vtkgdcm_SRCS}
-   vtkGDCMThreadedImageReader.cxx
-   )
--ENDIF(GDCM_HAVE_PTHREAD_H)
-+ENDIF(GDCM_HAVE_PTHREAD_H AND CMAKE_USE_PTHREADS)
- 
- INCLUDE(${VTK_USE_FILE})
- 
-@@ -183,11 +183,13 @@ IF(GDCM_WRAP_PHP)
- 
-   SWIG_ADD_MODULE(php_vtkgdcm php vtkgdcm.i)
-   SWIG_LINK_LIBRARIES(php_vtkgdcm vtkgdcm)
-+  TARGET_LINK_LIBRARIES(${SWIG_MODULE_php_vtkgdcm_REAL_NAME} ${vtkgdcm_LIBS})
-   IF(UNIX)
--  SET_TARGET_PROPERTIES(${SWIG_MODULE_php_vtkgdcm_REAL_NAME} PROPERTIES OUTPUT_NAME "vtkgdcm")
-+    SET_TARGET_PROPERTIES(${SWIG_MODULE_php_vtkgdcm_REAL_NAME} PROPERTIES OUTPUT_NAME "vtkgdcm")
-   ENDIF(UNIX)
-   SET_TARGET_PROPERTIES(${SWIG_MODULE_php_vtkgdcm_REAL_NAME} PROPERTIES PREFIX "")
-   SET_TARGET_PROPERTIES(${SWIG_MODULE_php_vtkgdcm_REAL_NAME} PROPERTIES LINK_INTERFACE_LIBRARIES "")
-+  set_property(TARGET ${SWIG_MODULE_php_vtkgdcm_REAL_NAME} PROPERTY NO_SONAME 1)
- 
- IF(NOT GDCM_INSTALL_NO_LIBRARIES)
-   INSTALL(TARGETS ${SWIG_MODULE_php_vtkgdcm_REAL_NAME}
-@@ -203,11 +205,13 @@ IF(NOT GDCM_INSTALL_NO_LIBRARIES)
- #  endif(NAMELINK_ONLY)
- 
- # See gdcm bug #3175803
-+if(${SWIG_VERSION} LESS 2.0.2)
- add_custom_command(TARGET ${SWIG_MODULE_php_vtkgdcm_REAL_NAME}
-   PRE_BUILD
-   COMMAND sed -i -e 's/zend_error_noreturn/zend_error/g' "${swig_generated_file_fullname}"
-   COMMENT "Patching zend_error_noreturn into zend_error"
-   )
-+endif()
- 
- # Let's copy vtkgdcm.php into the bin dir:
- ADD_CUSTOM_COMMAND(
-@@ -220,6 +224,9 @@ ADD_CUSTOM_TARGET(VTKGDCMPHP ALL
-   DEPENDS ${LIBRARY_OUTPUT_PATH}/vtkgdcm.php
-   COMMENT "building vtkgdcm.php"
- )
-+      INSTALL(FILES ${LIBRARY_OUTPUT_PATH}/vtkgdcm.php
-+        DESTINATION ${GDCM_INSTALL_LIB_DIR} COMPONENT VTKPythonModule
-+      )
- 
- ENDIF(NOT GDCM_INSTALL_NO_LIBRARIES)
- ENDIF(GDCM_WRAP_PHP)
-@@ -266,6 +273,7 @@ IF(GDCM_WRAP_CSHARP)
- 
-   IF(GDCM_USE_ACTIVIZ)
-     FIND_PACKAGE(Mummy REQUIRED)
-+    MARK_AS_ADVANCED(Mummy_DIR)
-     IF(NOT Mummy_BASE_DIR)
-       MESSAGE(FATAL_ERROR "error: Mummy_BASE_DIR not defined. Please set Mummy_DIR to the directory containing MummyConfig.cmake")
-     ENDIF(NOT Mummy_BASE_DIR)
-@@ -273,6 +281,7 @@ IF(GDCM_WRAP_CSHARP)
-     IF(NOT mummy_EXECUTABLE)
-       FIND_PROGRAM(mummy_EXECUTABLE mummy)
-     ENDIF(NOT mummy_EXECUTABLE)
-+    MARK_AS_ADVANCED(mummy_EXECUTABLE)
-     IF(NOT mummy_EXECUTABLE)
-       MESSAGE(FATAL_ERROR "error: mummy not found. mummy_EXECUTABLE='${mummy_EXECUTABLE}'")
-     ENDIF(NOT mummy_EXECUTABLE)
-@@ -280,6 +289,7 @@ IF(GDCM_WRAP_CSHARP)
-     IF(NOT gccxml_EXECUTABLE)
-       FIND_PROGRAM(gccxml_EXECUTABLE gccxml)
-     ENDIF(NOT gccxml_EXECUTABLE)
-+    MARK_AS_ADVANCED(gccxml_EXECUTABLE)
-     IF(NOT gccxml_EXECUTABLE)
-       MESSAGE(FATAL_ERROR "error: gccxml not found. gccxml_EXECUTABLE='${gccxml_EXECUTABLE}'")
-     ENDIF(NOT gccxml_EXECUTABLE)
-@@ -471,6 +481,7 @@ IF(GDCM_WRAP_CSHARP)
-         ENDIF(WIN32)
-         TARGET_LINK_LIBRARIES(Kitware.VTK.vtk${kit}.Unmanaged vtk${kit})
-         TARGET_LINK_LIBRARIES(Kitware.VTK.vtk${kit}.Unmanaged vtkCommon)
-+        set_property(TARGET Kitware.VTK.vtk${kit}.Unmanaged PROPERTY NO_SONAME 1)
-         # TODO -- rename this CopyLibraries here too...
-         ADD_DEPENDENCIES(Kitware.VTK.vtk${kit}.Unmanaged Kitware.mummy.CopyLibraries2)
-         ADD_DEPENDENCIES(Kitware.VTK.vtk${kit}.Unmanaged "vtk${kit}GenerateWrappers")
-@@ -506,6 +517,7 @@ IF(GDCM_WRAP_CSHARP)
-     SET(ALLKITS_CS_SOURCES
-       ${ALLKITS_CS_SOURCES}
-       "${CMAKE_CURRENT_BINARY_DIR}/csharp/AssemblyInfo.cs"
-+      ${CMAKE_CURRENT_SOURCE_DIR}/vtkGDCMImageReader_Extra.cs
-       )
- 
-     SET(AVDN_VTK_CSC_REFS ${ACTIVIZ_KITWARE_VTK_LIBRARY} ${ACTIVIZ_KITWARE_MUMMY_RUNTIME_LIBRARY})
-@@ -689,9 +701,9 @@ IF(GDCM_WRAP_PYTHON)
-     # do not set the version on the Python module:
-     #SET_TARGET_PROPERTIES(${VTKGDCM_NAME}PythonD PROPERTIES ${GDCM_LIBRARY_PROPERTIES})
-     ADD_LIBRARY(${VTKGDCM_NAME}Python MODULE ${VTKGDCM_NAME}PythonInit.cxx)
--    # do not set the version on the PythonD module:
-+    # do not set the version on the Python module:
-     SET_TARGET_PROPERTIES(${VTKGDCM_NAME}Python PROPERTIES ${GDCM_LIBRARY_PROPERTIES})
--    TARGET_LINK_LIBRARIES(${VTKGDCM_NAME}PythonD ${VTKGDCM_NAME})
-+    TARGET_LINK_LIBRARIES(${VTKGDCM_NAME}PythonD ${VTKGDCM_NAME} ${PYTHON_LIBRARY})
-     FOREACH(c ${vtkgdcm_LIBS} vtkFiltering)
-       TARGET_LINK_LIBRARIES(${VTKGDCM_NAME}PythonD ${c}Python${DEXTENSION})
-     ENDFOREACH(c)
-@@ -699,6 +711,8 @@ IF(GDCM_WRAP_PYTHON)
-       TARGET_LINK_LIBRARIES(${VTKGDCM_NAME}PythonD vtkPythonCore)
-     endif()
-     TARGET_LINK_LIBRARIES(${VTKGDCM_NAME}Python ${VTKGDCM_NAME}PythonD)
-+    set_property(TARGET ${VTKGDCM_NAME}Python PROPERTY NO_SONAME 1)
-+    #set_property(TARGET ${VTKGDCM_NAME}PythonD PROPERTY NO_SONAME 1)
-     # Python extension modules on Windows must have the extension ".pyd"
-     # instead of ".dll" as of Python 2.5.  Older python versions do support
-     # this suffix.

Deleted: trunk/packages/gdcm/trunk/debian/patches/doxygen_svg.patch
===================================================================
--- trunk/packages/gdcm/trunk/debian/patches/doxygen_svg.patch	2012-09-20 08:22:00 UTC (rev 12240)
+++ trunk/packages/gdcm/trunk/debian/patches/doxygen_svg.patch	2012-09-20 12:32:38 UTC (rev 12241)
@@ -1,22 +0,0 @@
-Index: gdcm-2.0.19/Utilities/doxygen/doxyfile.in
-===================================================================
---- gdcm-2.0.19.orig/Utilities/doxygen/doxyfile.in	2012-01-04 14:48:33.000000000 +0100
-+++ gdcm-2.0.19/Utilities/doxygen/doxyfile.in	2012-01-04 14:48:44.000000000 +0100
-@@ -637,7 +637,7 @@
- # for example use the pattern */test/*
- 
- EXCLUDE_PATTERNS       = */.svn/* \
--                         */.git/*
-+                         */.git/* \
-                          */VTK4/*
- 
- # The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names
-@@ -1592,7 +1592,7 @@
- # generated by dot. Possible values are png, jpg, or gif
- # If left blank png will be used.
- 
--DOT_IMAGE_FORMAT       = png
-+DOT_IMAGE_FORMAT       = svg
- 
- # The tag DOT_PATH can be used to specify the path where the dot tool can be
- # found. If left blank, it is assumed the dot tool can be found in the path.

Deleted: trunk/packages/gdcm/trunk/debian/patches/fixdoxygeninstall.patch
===================================================================
--- trunk/packages/gdcm/trunk/debian/patches/fixdoxygeninstall.patch	2012-09-20 08:22:00 UTC (rev 12240)
+++ trunk/packages/gdcm/trunk/debian/patches/fixdoxygeninstall.patch	2012-09-20 12:32:38 UTC (rev 12241)
@@ -1,93 +0,0 @@
-Description: <short summary of the patch>
- TODO: Put a short summary on the line above and replace this paragraph
- with a longer explanation of this change. Complete the meta-information
- with other relevant fields (see below for details). To make it easier, the
- information below has been extracted from the changelog. Adjust it or drop
- it.
- .
- gdcm (2.2.0-11) UNRELEASED; urgency=low
- .
-   * Remove SONAME from python module, as per policy
-   * Build PHP5 bindings
-   * Fix issue with python 3.2 vs 2.7
-   * Adding a gdcm-doc package
-Author: Mathieu Malaterre <malat at debian.org>
-
----
-The information above should follow the Patch Tagging Guidelines, please
-checkout http://dep.debian.net/deps/dep3/ to learn about the format. Here
-are templates for supplementary fields that you might want to add:
-
-Origin: <vendor|upstream|other>, <url of original patch>
-Bug: <url in upstream bugtracker>
-Bug-Debian: http://bugs.debian.org/<bugnumber>
-Bug-Ubuntu: https://launchpad.net/bugs/<bugnumber>
-Forwarded: <no|not-needed|url proving that it has been forwarded>
-Reviewed-By: <name and email of someone who approved the patch>
-Last-Update: <YYYY-MM-DD>
-
-Index: gdcm-2.2.0/Utilities/doxygen/CMakeLists.txt
-===================================================================
---- gdcm-2.2.0.orig/Utilities/doxygen/CMakeLists.txt	2011-12-30 15:37:28.000000000 +0000
-+++ gdcm-2.2.0/Utilities/doxygen/CMakeLists.txt	2012-05-14 08:13:32.390320263 +0000
-@@ -143,6 +143,10 @@
-       DEPENDS ${CMAKE_CURRENT_BINARY_DIR}/latex/gdcm-${GDCM_VERSION}.pdf
-       COMMENT  "GDCM: Executing GDCMDoxygenPDF"
-     )
-+    INSTALL(FILES
-+      ${CMAKE_CURRENT_BINARY_DIR}/latex/gdcm-${GDCM_VERSION}.pdf
-+      DESTINATION ${GDCM_INSTALL_DOC_DIR}
-+    )
-   ELSE(UNIX AND GDCM_PDF_DOCUMENTATION)
-     # make DoxygenDoc depends on the final tarball thus all file are garantee to be generated
-     ADD_CUSTOM_TARGET(GDCMDoxygenDoc
-@@ -186,6 +190,10 @@
-     ${CMAKE_CURRENT_BINARY_DIR}/man/man1/gdcmviewer.1
-     DESTINATION ${GDCM_INSTALL_MAN_DIR}/man1 COMPONENT Development
-   )
-+  install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/html DESTINATION ${GDCM_INSTALL_DOC_DIR}
-+    PATTERN "*.md5" EXCLUDE
-+    PATTERN "*.dot" EXCLUDE
-+  )
- 
-   # http://lists.debian.org/debian-italian/2006/12/msg00878.html
-   # man2txt : man man | col -b | less
-Index: gdcm-2.2.0/Utilities/doxygen/vtk/CMakeLists.txt
-===================================================================
---- gdcm-2.2.0.orig/Utilities/doxygen/vtk/CMakeLists.txt	2011-12-30 15:37:28.000000000 +0000
-+++ gdcm-2.2.0/Utilities/doxygen/vtk/CMakeLists.txt	2012-05-14 08:13:08.706321120 +0000
-@@ -22,7 +22,7 @@
-     SET (QT_TAG_FILE "${CMAKE_CURRENT_BINARY_DIR}/Qt.tag")
-   ENDIF (INCLUDE_QT_DOCUMENTATION)
-   SET(BUILD_DOXYGEN ON)
--  SET(DOCUMENTATION_DOWNLOAD_VTK_TAGFILE ON)
-+  SET(DOCUMENTATION_DOWNLOAD_VTK_TAGFILE OFF)
-   SET(DOCUMENTATION_HTML_TARZ ON)
-   SET(DOXYGEN_PROJECT_NAME "vtkgdcm")
-   if(VTK_SOURCE_DIR)
-@@ -103,7 +103,7 @@
-     ${CMAKE_CURRENT_BINARY_DIR}/doc_makeall.sh @ONLY )
- 
-   ADD_CUSTOM_TARGET(${DOXYGEN_PROJECT_NAME}DoxygenDoc
--    #ALL
-+    ALL
-     ${BASH}
-     ${CMAKE_CURRENT_BINARY_DIR}/doc_makeall.sh)
- 
-Index: gdcm-2.2.0/Utilities/VTK/CMakeLists.txt
-===================================================================
---- gdcm-2.2.0.orig/Utilities/VTK/CMakeLists.txt	2012-05-13 16:07:00.000000000 +0000
-+++ gdcm-2.2.0/Utilities/VTK/CMakeLists.txt	2012-05-14 08:12:57.402321528 +0000
-@@ -699,10 +699,10 @@
-     ADD_LIBRARY(${VTKGDCM_NAME}PythonD ${vtkgdcmPYTHON_SRCS})
-     # this is a library set the version:
-     # do not set the version on the Python module:
--    #SET_TARGET_PROPERTIES(${VTKGDCM_NAME}PythonD PROPERTIES ${GDCM_LIBRARY_PROPERTIES})
-+    SET_TARGET_PROPERTIES(${VTKGDCM_NAME}PythonD PROPERTIES ${GDCM_LIBRARY_PROPERTIES})
-     ADD_LIBRARY(${VTKGDCM_NAME}Python MODULE ${VTKGDCM_NAME}PythonInit.cxx)
-     # do not set the version on the Python module:
--    SET_TARGET_PROPERTIES(${VTKGDCM_NAME}Python PROPERTIES ${GDCM_LIBRARY_PROPERTIES})
-+    #SET_TARGET_PROPERTIES(${VTKGDCM_NAME}Python PROPERTIES ${GDCM_LIBRARY_PROPERTIES})
-     TARGET_LINK_LIBRARIES(${VTKGDCM_NAME}PythonD ${VTKGDCM_NAME} ${PYTHON_LIBRARY})
-     FOREACH(c ${vtkgdcm_LIBS} vtkFiltering)
-       TARGET_LINK_LIBRARIES(${VTKGDCM_NAME}PythonD ${c}Python${DEXTENSION})

Deleted: trunk/packages/gdcm/trunk/debian/patches/fixgcj.patch
===================================================================
--- trunk/packages/gdcm/trunk/debian/patches/fixgcj.patch	2012-09-20 08:22:00 UTC (rev 12240)
+++ trunk/packages/gdcm/trunk/debian/patches/fixgcj.patch	2012-09-20 12:32:38 UTC (rev 12241)
@@ -1,25 +0,0 @@
-From 5263b20bb4ea628f850c8f3b0d5c1d8a5f2163a2 Mon Sep 17 00:00:00 2001
-From: Mathieu Malaterre <mathieu.malaterre at gmail.com>
-Date: Tue, 3 Jan 2012 17:09:13 +0100
-Subject: [PATCH] Need to explicitely state we need 1.5 for generic
-
----
- CMake/FindJavaProperties.cmake |    2 +-
- 1 files changed, 1 insertions(+), 1 deletions(-)
-
-diff --git a/CMake/FindJavaProperties.cmake b/CMake/FindJavaProperties.cmake
-index cfc48a8..14e9c62 100644
---- a/CMake/FindJavaProperties.cmake
-+++ b/CMake/FindJavaProperties.cmake
-@@ -57,7 +57,7 @@ if(${current_list_path}/GetSystemProperty.java IS_NEWER_THAN ${CMAKE_BINARY_DIR}
-   #message("${current_list_path}/GetSystemProperty.java")
-   #message("${CMAKE_CURRENT_BINARY_DIR}/GetSystemProperty.class")
-   execute_process(
--    COMMAND ${Java_JAVAC_EXECUTABLE}
-+    COMMAND ${Java_JAVAC_EXECUTABLE} -source 1.5
-     ${current_list_path}/GetSystemProperty.java -d ${CMAKE_BINARY_DIR}
-     WORKING_DIRECTORY ${CMAKE_BINARY_DIR}
-     )
--- 
-1.7.4.1
-

Deleted: trunk/packages/gdcm/trunk/debian/patches/fixgcj2.patch
===================================================================
--- trunk/packages/gdcm/trunk/debian/patches/fixgcj2.patch	2012-09-20 08:22:00 UTC (rev 12240)
+++ trunk/packages/gdcm/trunk/debian/patches/fixgcj2.patch	2012-09-20 12:32:38 UTC (rev 12241)
@@ -1,24 +0,0 @@
-From 4ec434e5bfadaaea1d5af88cea784f7386ea4e6b Mon Sep 17 00:00:00 2001
-From: Mathieu Malaterre <mathieu.malaterre at gmail.com>
-Date: Wed, 4 Jan 2012 14:23:54 +0100
-Subject: [PATCH] Another round of fix for kFreeBSD OS
-
----
- CMake/FindJNI.cmake |    1 +
- 1 files changed, 1 insertions(+), 0 deletions(-)
-
-diff --git a/CMake/FindJNI.cmake b/CMake/FindJNI.cmake
-index bb41bc7..62807a5 100644
---- a/CMake/FindJNI.cmake
-+++ b/CMake/FindJNI.cmake
-@@ -14,6 +14,7 @@ STRING(TOLOWER ${JavaProp_OS_NAME} include_os_name) # Linux -> linux
- SET(JAVA_JNI_MD_INCLUDE_DIRECTORIES
-   ${JAVA_INCLUDE_PATH}/${include_os_name}
-   ${JAVA_INCLUDE_PATH}/win32 # win32
-+  ${JAVA_INCLUDE_PATH}/linux # kFreeBSD
-   )
- FIND_PATH(JAVA_INCLUDE_PATH2 jni_md.h
-   ${JAVA_JNI_MD_INCLUDE_DIRECTORIES}
--- 
-1.7.4.1
-

Modified: trunk/packages/gdcm/trunk/debian/patches/fixhurd.patch
===================================================================
--- trunk/packages/gdcm/trunk/debian/patches/fixhurd.patch	2012-09-20 08:22:00 UTC (rev 12240)
+++ trunk/packages/gdcm/trunk/debian/patches/fixhurd.patch	2012-09-20 12:32:38 UTC (rev 12241)
@@ -1,9 +1,12 @@
-According to explanation from:
-http://www.gnu.org/software/hurd/hurd/porting/guidelines.html#GNU_specific_define_tt_
-Index: gdcm-2.2.0/Source/Common/gdcmSystem.cxx
+Description: Fix compilation on GNU/Hurd
+ According to explanation from:
+ http://www.gnu.org/software/hurd/hurd/porting/guidelines.html#GNU_specific_define_tt_
+Author: Mathieu Malaterre <malat at debian.org>
+
+Index: gdcm-2.2.1/Source/Common/gdcmSystem.cxx
 ===================================================================
---- gdcm-2.2.0.orig/Source/Common/gdcmSystem.cxx	2012-03-21 21:54:04.000000000 +0100
-+++ gdcm-2.2.0/Source/Common/gdcmSystem.cxx	2012-03-21 21:54:20.000000000 +0100
+--- gdcm-2.2.1.orig/Source/Common/gdcmSystem.cxx	2012-09-20 10:48:46.600116872 +0200
++++ gdcm-2.2.1/Source/Common/gdcmSystem.cxx	2012-09-20 10:48:51.756116686 +0200
 @@ -363,6 +363,10 @@
    return Rmdir(source) == 0;
  }
@@ -15,11 +18,11 @@
  // return size of file; also returns zero if no file exists
  size_t System::FileSize(const char* filename)
  {
-Index: gdcm-2.2.0/Source/DataDictionary/gdcmGlobal.cxx
+Index: gdcm-2.2.1/Source/DataDictionary/gdcmGlobal.cxx
 ===================================================================
---- gdcm-2.2.0.orig/Source/DataDictionary/gdcmGlobal.cxx	2012-03-21 21:54:04.000000000 +0100
-+++ gdcm-2.2.0/Source/DataDictionary/gdcmGlobal.cxx	2012-03-21 21:54:20.000000000 +0100
-@@ -131,6 +131,10 @@
+--- gdcm-2.2.1.orig/Source/DataDictionary/gdcmGlobal.cxx	2012-09-20 10:48:46.616116871 +0200
++++ gdcm-2.2.1/Source/DataDictionary/gdcmGlobal.cxx	2012-09-20 10:48:51.756116686 +0200
+@@ -133,6 +133,10 @@
    return true;
  }
  
@@ -30,10 +33,10 @@
  const char *Global::Locate(const char *resfile) const
  {
  #ifdef _WIN32
-Index: gdcm-2.2.0/Utilities/socketxx/socket++/sockstream.h
+Index: gdcm-2.2.1/Utilities/socketxx/socket++/sockstream.h
 ===================================================================
---- gdcm-2.2.0.orig/Utilities/socketxx/socket++/sockstream.h	2012-03-21 21:54:19.000000000 +0100
-+++ gdcm-2.2.0/Utilities/socketxx/socket++/sockstream.h	2012-03-21 21:54:20.000000000 +0100
+--- gdcm-2.2.1.orig/Utilities/socketxx/socket++/sockstream.h	2012-09-20 10:48:46.636116871 +0200
++++ gdcm-2.2.1/Utilities/socketxx/socket++/sockstream.h	2012-09-20 10:48:51.756116686 +0200
 @@ -165,7 +165,7 @@
              msg_peek            = MSG_PEEK,
              msg_dontroute    = MSG_DONTROUTE
@@ -43,10 +46,10 @@
              ,msg_maxiovlen    = MSG_MAXIOVLEN
  #endif
          };
-Index: gdcm-2.2.0/Utilities/socketxx/socket++/local.h
+Index: gdcm-2.2.1/Utilities/socketxx/socket++/local.h
 ===================================================================
---- gdcm-2.2.0.orig/Utilities/socketxx/socket++/local.h	2012-03-21 21:54:19.000000000 +0100
-+++ gdcm-2.2.0/Utilities/socketxx/socket++/local.h	2012-03-21 21:54:20.000000000 +0100
+--- gdcm-2.2.1.orig/Utilities/socketxx/socket++/local.h	2012-09-20 10:48:46.652116870 +0200
++++ gdcm-2.2.1/Utilities/socketxx/socket++/local.h	2012-09-20 10:48:51.756116686 +0200
 @@ -97,7 +97,7 @@
  //  extern "C" int gethostname (char* hostname, size_t len);
  // the above breaks on some old MacOSX system where prototype is:
@@ -56,10 +59,10 @@
    extern char* SYS_SIGLIST [];
  #endif
  #endif
-Index: gdcm-2.2.0/Source/MessageExchangeDefinition/gdcmULConnectionInfo.cxx
+Index: gdcm-2.2.1/Source/MessageExchangeDefinition/gdcmULConnectionInfo.cxx
 ===================================================================
---- gdcm-2.2.0.orig/Source/MessageExchangeDefinition/gdcmULConnectionInfo.cxx	2012-03-21 21:54:51.000000000 +0100
-+++ gdcm-2.2.0/Source/MessageExchangeDefinition/gdcmULConnectionInfo.cxx	2012-03-21 21:54:55.000000000 +0100
+--- gdcm-2.2.1.orig/Source/MessageExchangeDefinition/gdcmULConnectionInfo.cxx	2012-09-20 10:48:46.980116858 +0200
++++ gdcm-2.2.1/Source/MessageExchangeDefinition/gdcmULConnectionInfo.cxx	2012-09-20 10:48:51.756116686 +0200
 @@ -35,9 +35,7 @@
  #include <arpa/inet.h>
  #endif

Deleted: trunk/packages/gdcm/trunk/debian/patches/fixundef.patch
===================================================================
--- trunk/packages/gdcm/trunk/debian/patches/fixundef.patch	2012-09-20 08:22:00 UTC (rev 12240)
+++ trunk/packages/gdcm/trunk/debian/patches/fixundef.patch	2012-09-20 12:32:38 UTC (rev 12241)
@@ -1,50 +0,0 @@
-Index: gdcm-2.2.0/Utilities/VTK/CMakeLists.txt
-===================================================================
---- gdcm-2.2.0.orig/Utilities/VTK/CMakeLists.txt	2012-04-11 12:52:48.000000000 +0000
-+++ gdcm-2.2.0/Utilities/VTK/CMakeLists.txt	2012-04-11 14:02:25.000000000 +0000
-@@ -12,11 +12,11 @@
-   vtkGDCMMedicalImageProperties.cxx
-   )
- 
--IF(GDCM_HAVE_PTHREAD_H AND CMAKE_USE_PTHREADS)
-+IF(GDCM_HAVE_PTHREAD_H)
-   SET(vtkgdcm_SRCS ${vtkgdcm_SRCS}
-   vtkGDCMThreadedImageReader.cxx
-   )
--ENDIF(GDCM_HAVE_PTHREAD_H AND CMAKE_USE_PTHREADS)
-+ENDIF(GDCM_HAVE_PTHREAD_H)
- 
- INCLUDE(${VTK_USE_FILE})
- 
-@@ -127,6 +127,9 @@
- 
- SET_TARGET_PROPERTIES(${VTKGDCM_NAME} PROPERTIES ${GDCM_LIBRARY_PROPERTIES})
- TARGET_LINK_LIBRARIES(${VTKGDCM_NAME} gdcmMSFF ${vtkgdcm_LIBS})
-+IF(GDCM_HAVE_PTHREAD_H)
-+TARGET_LINK_LIBRARIES(${VTKGDCM_NAME} pthread)
-+ENDIF(GDCM_HAVE_PTHREAD_H)
- # prevent viral dep of vtkgdcm
- SET_PROPERTY(TARGET ${VTKGDCM_NAME} PROPERTY LINK_INTERFACE_LIBRARIES "")
- IF(NOT GDCM_INSTALL_NO_LIBRARIES)
-@@ -467,6 +470,7 @@
-           TARGET_LINK_LIBRARIES(Kitware.VTK.vtk${kit}.Unmanaged ${Mummy_RUNTIME_LINK_LIBRARIES})
-         ENDIF(WIN32)
-         TARGET_LINK_LIBRARIES(Kitware.VTK.vtk${kit}.Unmanaged vtk${kit})
-+        TARGET_LINK_LIBRARIES(Kitware.VTK.vtk${kit}.Unmanaged vtkCommon)
-         # TODO -- rename this CopyLibraries here too...
-         ADD_DEPENDENCIES(Kitware.VTK.vtk${kit}.Unmanaged Kitware.mummy.CopyLibraries2)
-         ADD_DEPENDENCIES(Kitware.VTK.vtk${kit}.Unmanaged "vtk${kit}GenerateWrappers")
-@@ -688,9 +692,12 @@
-     # do not set the version on the PythonD module:
-     SET_TARGET_PROPERTIES(${VTKGDCM_NAME}Python PROPERTIES ${GDCM_LIBRARY_PROPERTIES})
-     TARGET_LINK_LIBRARIES(${VTKGDCM_NAME}PythonD ${VTKGDCM_NAME})
--    FOREACH(c ${vtkgdcm_LIBS})
-+    FOREACH(c ${vtkgdcm_LIBS} vtkFiltering)
-       TARGET_LINK_LIBRARIES(${VTKGDCM_NAME}PythonD ${c}Python${DEXTENSION})
-     ENDFOREACH(c)
-+    if(TARGET vtkPythonCore)
-+      TARGET_LINK_LIBRARIES(${VTKGDCM_NAME}PythonD vtkPythonCore)
-+    endif()
-     TARGET_LINK_LIBRARIES(${VTKGDCM_NAME}Python ${VTKGDCM_NAME}PythonD)
-     # Python extension modules on Windows must have the extension ".pyd"
-     # instead of ".dll" as of Python 2.5.  Older python versions do support

Deleted: trunk/packages/gdcm/trunk/debian/patches/kfreebsdfix.patch
===================================================================
--- trunk/packages/gdcm/trunk/debian/patches/kfreebsdfix.patch	2012-09-20 08:22:00 UTC (rev 12240)
+++ trunk/packages/gdcm/trunk/debian/patches/kfreebsdfix.patch	2012-09-20 12:32:38 UTC (rev 12241)
@@ -1,44 +0,0 @@
-Index: gdcm-2.2.0/Utilities/socketxx/socket++/local.h
-===================================================================
---- gdcm-2.2.0.orig/Utilities/socketxx/socket++/local.h	2012-02-01 14:51:59.000000000 +0100
-+++ gdcm-2.2.0/Utilities/socketxx/socket++/local.h	2012-02-01 14:52:04.000000000 +0100
-@@ -97,7 +97,7 @@
- //  extern "C" int gethostname (char* hostname, size_t len);
- // the above breaks on some old MacOSX system where prototype is:
- //  extern "C" int gethostname (char* hostname, int len);
--#if !(defined(__FreeBSD__) || defined(__NetBSD__) || defined(__OpenBSD__) || defined(__bsdi__) || defined(__APPLE__))
-+#if !(defined(__FreeBSD__) || defined(__FreeBSD_kernel__) || defined(__NetBSD__) || defined(__OpenBSD__) || defined(__bsdi__) || defined(__APPLE__))
-   extern char* SYS_SIGLIST [];
- #endif
- #endif
-Index: gdcm-2.2.0/Source/MessageExchangeDefinition/gdcmULConnectionInfo.cxx
-===================================================================
---- gdcm-2.2.0.orig/Source/MessageExchangeDefinition/gdcmULConnectionInfo.cxx	2012-02-01 14:51:59.000000000 +0100
-+++ gdcm-2.2.0/Source/MessageExchangeDefinition/gdcmULConnectionInfo.cxx	2012-02-01 14:52:04.000000000 +0100
-@@ -28,6 +28,13 @@
- #include "gdcmULConnectionInfo.h"
- #include <socket++/sockinet.h>//for setting up the local socket
- 
-+#if defined (__FreeBSD__) || defined(__FreeBSD_kernel__) // inet_addr
-+#include <sys/types.h>
-+#include <sys/socket.h>
-+#include <netinet/in.h>
-+#include <arpa/inet.h>
-+#endif
-+
- #if defined (__APPLE__)
- #include <arpa/inet.h> // inet_addr
- #endif
-Index: gdcm-2.2.0/Utilities/socketxx/socket++/sockstream.h
-===================================================================
---- gdcm-2.2.0.orig/Utilities/socketxx/socket++/sockstream.h	2012-02-01 14:51:59.000000000 +0100
-+++ gdcm-2.2.0/Utilities/socketxx/socket++/sockstream.h	2012-02-02 08:50:13.000000000 +0100
-@@ -165,7 +165,7 @@
-             msg_peek            = MSG_PEEK,
-             msg_dontroute    = MSG_DONTROUTE
- 
--#if !(defined(__FreeBSD__) || defined(__NetBSD__) || defined(__OpenBSD__) || defined(__bsdi__) || defined(__APPLE__))
-+#if !(defined(__FreeBSD__) || defined(__FreeBSD_kernel__) || defined(__NetBSD__) || defined(__OpenBSD__) || defined(__bsdi__) || defined(__APPLE__))
-             ,msg_maxiovlen    = MSG_MAXIOVLEN
- #endif
-         };

Modified: trunk/packages/gdcm/trunk/debian/patches/linkvtkdoc.patch
===================================================================
--- trunk/packages/gdcm/trunk/debian/patches/linkvtkdoc.patch	2012-09-20 08:22:00 UTC (rev 12240)
+++ trunk/packages/gdcm/trunk/debian/patches/linkvtkdoc.patch	2012-09-20 12:32:38 UTC (rev 12241)
@@ -1,9 +1,20 @@
 Description: link to vtk doc
 Author: Mathieu Malaterre <malat at debian.org>
 
---- gdcm-2.2.0.orig/Utilities/doxygen/vtk/CMakeLists.txt
-+++ gdcm-2.2.0/Utilities/doxygen/vtk/CMakeLists.txt
-@@ -89,7 +89,7 @@ MARK_AS_ADVANCED(VTK_DIR)
+Index: gdcm-2.2.1/Utilities/doxygen/vtk/CMakeLists.txt
+===================================================================
+--- gdcm-2.2.1.orig/Utilities/doxygen/vtk/CMakeLists.txt	2012-09-20 09:03:16.688085464 +0000
++++ gdcm-2.2.1/Utilities/doxygen/vtk/CMakeLists.txt	2012-09-20 09:03:51.152084220 +0000
+@@ -22,7 +22,7 @@
+     SET (QT_TAG_FILE "${CMAKE_CURRENT_BINARY_DIR}/Qt.tag")
+   ENDIF (INCLUDE_QT_DOCUMENTATION)
+   SET(BUILD_DOXYGEN ON)
+-  SET(DOCUMENTATION_DOWNLOAD_VTK_TAGFILE ON)
++  SET(DOCUMENTATION_DOWNLOAD_VTK_TAGFILE OFF)
+   SET(DOCUMENTATION_HTML_TARZ ON)
+   SET(DOXYGEN_PROJECT_NAME "vtkgdcm")
+   if(VTK_SOURCE_DIR)
+@@ -89,7 +89,7 @@
      GET_FILENAME_COMPONENT(DOT_PATH ${DOT} PATH)
    ENDIF(NOT DOT_PATH)
  
@@ -12,9 +23,20 @@
    IF(INCLUDE_QT_DOCUMENTATION)
      SET (TAGFILES "${TAGFILES} \"${QT_TAG_FILE}=http://doc.trolltech.com/4.2\"")
    ENDIF(INCLUDE_QT_DOCUMENTATION)
---- gdcm-2.2.0.orig/Utilities/doxygen/vtk/doxyfile.in
-+++ gdcm-2.2.0/Utilities/doxygen/vtk/doxyfile.in
-@@ -23,6 +23,7 @@ PDF_HYPERLINKS       = YES
+@@ -103,7 +103,7 @@
+     ${CMAKE_CURRENT_BINARY_DIR}/doc_makeall.sh @ONLY )
+ 
+   ADD_CUSTOM_TARGET(${DOXYGEN_PROJECT_NAME}DoxygenDoc
+-    #ALL
++    ALL
+     ${BASH}
+     ${CMAKE_CURRENT_BINARY_DIR}/doc_makeall.sh)
+ 
+Index: gdcm-2.2.1/Utilities/doxygen/vtk/doxyfile.in
+===================================================================
+--- gdcm-2.2.1.orig/Utilities/doxygen/vtk/doxyfile.in	2012-09-20 09:03:16.688085464 +0000
++++ gdcm-2.2.1/Utilities/doxygen/vtk/doxyfile.in	2012-09-20 09:03:51.152084220 +0000
+@@ -23,6 +23,7 @@
  HAVE_DOT             = YES
  #HAVE_DOT            = NO
  DOT_PATH             = "@DOT_PATH@"
@@ -22,3 +44,16 @@
  CLASS_GRAPH          = YES
  COLLABORATION_GRAPH  = YES
  TEMPLATE_RELATIONS   = YES
+Index: gdcm-2.2.1/Utilities/doxygen/doxyfile.in
+===================================================================
+--- gdcm-2.2.1.orig/Utilities/doxygen/doxyfile.in	2012-09-20 09:03:16.760085461 +0000
++++ gdcm-2.2.1/Utilities/doxygen/doxyfile.in	2012-09-20 09:03:51.152084220 +0000
+@@ -1591,7 +1591,7 @@
+ # generated by dot. Possible values are png, jpg, or gif
+ # If left blank png will be used.
+ 
+-DOT_IMAGE_FORMAT       = png
++DOT_IMAGE_FORMAT       = svg
+ 
+ # The tag DOT_PATH can be used to specify the path where the dot tool can be
+ # found. If left blank, it is assumed the dot tool can be found in the path.

Deleted: trunk/packages/gdcm/trunk/debian/patches/removedocfromall.patch
===================================================================
--- trunk/packages/gdcm/trunk/debian/patches/removedocfromall.patch	2012-09-20 08:22:00 UTC (rev 12240)
+++ trunk/packages/gdcm/trunk/debian/patches/removedocfromall.patch	2012-09-20 12:32:38 UTC (rev 12241)
@@ -1,21 +0,0 @@
-This is a bad idea to remove doc from ALL as man page need doxygen step
-to be generated.
-Index: gdcm-2.0.18/Utilities/doxygen/CMakeLists.txt
-===================================================================
---- gdcm-2.0.18.orig/Utilities/doxygen/CMakeLists.txt	2011-09-06 15:47:50.000000000 +0200
-+++ gdcm-2.0.18/Utilities/doxygen/CMakeLists.txt	2011-09-06 15:48:05.000000000 +0200
-@@ -139,14 +139,12 @@
-     )
-     # add target to 'ALL'
-     ADD_CUSTOM_TARGET(GDCMDoxygenPDF
--      ALL
-       DEPENDS ${CMAKE_CURRENT_BINARY_DIR}/latex/gdcm-${GDCM_VERSION}.pdf
-       COMMENT  "GDCM: Executing GDCMDoxygenPDF"
-     )
-   ELSE(UNIX AND GDCM_PDF_DOCUMENTATION)
-     # make DoxygenDoc depends on the final tarball thus all file are garantee to be generated
-     ADD_CUSTOM_TARGET(GDCMDoxygenDoc
--      ALL
-       DEPENDS ${GDCM_DOC_TARBALL}
-       COMMENT  "GDCM: Executing GDCMDoxygenDoc"
-     )

Deleted: trunk/packages/gdcm/trunk/debian/patches/removepythonlink.patch
===================================================================
--- trunk/packages/gdcm/trunk/debian/patches/removepythonlink.patch	2012-09-20 08:22:00 UTC (rev 12240)
+++ trunk/packages/gdcm/trunk/debian/patches/removepythonlink.patch	2012-09-20 12:32:38 UTC (rev 12241)
@@ -1,13 +0,0 @@
-Index: gdcm-2.2.0/Wrapping/Python/CMakeLists.txt
-===================================================================
---- gdcm-2.2.0.orig/Wrapping/Python/CMakeLists.txt	2012-02-01 14:51:58.000000000 +0100
-+++ gdcm-2.2.0/Wrapping/Python/CMakeLists.txt	2012-02-01 14:52:09.000000000 +0100
-@@ -83,7 +83,7 @@
- # the other gdcm lib. bad !!!
- #SET (SWIG_MODULE_${MODULE_NAME}_EXTRA_DEPS ${SWIG_MODULE_${MODULE_NAME}_EXTRA_DEPS} ${CMAKE_CURRENT_SOURCE_DIR}/docstrings.i)
- SWIG_ADD_MODULE(${GDCM_PYTHON_IMPLEMENTATION_NAME} python gdcmswig.i gdcmPythonFilter.cxx)
--SWIG_LINK_LIBRARIES(${GDCM_PYTHON_IMPLEMENTATION_NAME} gdcmMEXD gdcmMSFF gdcmIOD ${PYTHON_LIBRARIES})
-+SWIG_LINK_LIBRARIES(${GDCM_PYTHON_IMPLEMENTATION_NAME} gdcmMEXD gdcmMSFF gdcmIOD) # ${PYTHON_LIBRARIES})
- 
- #MESSAGE(SWIG_MODULE_${MODULE_NAME}_EXTRA_DEPS)
- #CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/gdcm.pth.in

Deleted: trunk/packages/gdcm/trunk/debian/patches/removesonamepython.patch
===================================================================
--- trunk/packages/gdcm/trunk/debian/patches/removesonamepython.patch	2012-09-20 08:22:00 UTC (rev 12240)
+++ trunk/packages/gdcm/trunk/debian/patches/removesonamepython.patch	2012-09-20 12:32:38 UTC (rev 12241)
@@ -1,22 +0,0 @@
-From 6de3cc940b3358f493f2022774a28ebe6f454a84 Mon Sep 17 00:00:00 2001
-From: Mathieu Malaterre <mathieu.malaterre at gmail.com>
-Date: Mon, 7 May 2012 11:29:34 +0200
-Subject: [PATCH] Start using the next cmake 2.8.9 property: NO_SONAME
-
-This property will allow the building of proper module, without SONAME
----
- Wrapping/Python/CMakeLists.txt |    1 +
- 1 files changed, 1 insertions(+), 0 deletions(-)
-
-Index: gdcm-2.2.0/Wrapping/Python/CMakeLists.txt
-===================================================================
---- gdcm-2.2.0.orig/Wrapping/Python/CMakeLists.txt	2012-05-07 11:33:30.239979003 +0200
-+++ gdcm-2.2.0/Wrapping/Python/CMakeLists.txt	2012-05-07 11:33:40.719978624 +0200
-@@ -84,6 +84,7 @@
- #SET (SWIG_MODULE_${MODULE_NAME}_EXTRA_DEPS ${SWIG_MODULE_${MODULE_NAME}_EXTRA_DEPS} ${CMAKE_CURRENT_SOURCE_DIR}/docstrings.i)
- SWIG_ADD_MODULE(${GDCM_PYTHON_IMPLEMENTATION_NAME} python gdcmswig.i gdcmPythonFilter.cxx)
- SWIG_LINK_LIBRARIES(${GDCM_PYTHON_IMPLEMENTATION_NAME} gdcmMEXD gdcmMSFF gdcmIOD) # ${PYTHON_LIBRARIES})
-+set_property(TARGET ${SWIG_MODULE_${GDCM_PYTHON_IMPLEMENTATION_NAME}_REAL_NAME} PROPERTY NO_SONAME 1)
- 
- #MESSAGE(SWIG_MODULE_${MODULE_NAME}_EXTRA_DEPS)
- #CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/gdcm.pth.in

Deleted: trunk/packages/gdcm/trunk/debian/patches/removetransitivepython.patch
===================================================================
--- trunk/packages/gdcm/trunk/debian/patches/removetransitivepython.patch	2012-09-20 08:22:00 UTC (rev 12240)
+++ trunk/packages/gdcm/trunk/debian/patches/removetransitivepython.patch	2012-09-20 12:32:38 UTC (rev 12241)
@@ -1,13 +0,0 @@
-Description: remove linking to libpythonX.Y.so from python module
-Author: Mathieu Malaterre <malat at debian.org>
-
---- gdcm-2.2.0.orig/Utilities/VTK/CMakeLists.txt
-+++ gdcm-2.2.0/Utilities/VTK/CMakeLists.txt
-@@ -711,6 +711,7 @@ IF(GDCM_WRAP_PYTHON)
-       TARGET_LINK_LIBRARIES(${VTKGDCM_NAME}PythonD vtkPythonCore)
-     endif()
-     TARGET_LINK_LIBRARIES(${VTKGDCM_NAME}Python ${VTKGDCM_NAME}PythonD)
-+SET_PROPERTY(TARGET ${VTKGDCM_NAME}PythonD PROPERTY LINK_INTERFACE_LIBRARIES "")
-     set_property(TARGET ${VTKGDCM_NAME}Python PROPERTY NO_SONAME 1)
-     #set_property(TARGET ${VTKGDCM_NAME}PythonD PROPERTY NO_SONAME 1)
-     # Python extension modules on Windows must have the extension ".pyd"

Modified: trunk/packages/gdcm/trunk/debian/patches/series
===================================================================
--- trunk/packages/gdcm/trunk/debian/patches/series	2012-09-20 08:22:00 UTC (rev 12240)
+++ trunk/packages/gdcm/trunk/debian/patches/series	2012-09-20 12:32:38 UTC (rev 12241)
@@ -1,17 +1,3 @@
 toplevelskip.patch
-#removedocfromall.patch
-fixgcj.patch
-fixgcj2.patch
-doxygen_svg.patch
-stableapi.patch
-activiz.net.patch
-kfreebsdfix.patch
-removepythonlink.patch
 fixhurd.patch
-fixundef.patch
-removesonamepython.patch
-sonameprops.patch
-csharpfixes.patch
-fixdoxygeninstall.patch
 linkvtkdoc.patch
-removetransitivepython.patch

Deleted: trunk/packages/gdcm/trunk/debian/patches/sonameprops.patch
===================================================================
--- trunk/packages/gdcm/trunk/debian/patches/sonameprops.patch	2012-09-20 08:22:00 UTC (rev 12240)
+++ trunk/packages/gdcm/trunk/debian/patches/sonameprops.patch	2012-09-20 12:32:38 UTC (rev 12241)
@@ -1,55 +0,0 @@
-Description: <short summary of the patch>
- TODO: Put a short summary on the line above and replace this paragraph
- with a longer explanation of this change. Complete the meta-information
- with other relevant fields (see below for details). To make it easier, the
- information below has been extracted from the changelog. Adjust it or drop
- it.
- .
- gdcm (2.2.0-11) UNRELEASED; urgency=low
- .
-   * Remove SONAME from python module, as per policy
-   * Build PHP5 bindings
-   * Fix issue with python 3.2 vs 2.7
-Author: Mathieu Malaterre <malat at debian.org>
-
----
-The information above should follow the Patch Tagging Guidelines, please
-checkout http://dep.debian.net/deps/dep3/ to learn about the format. Here
-are templates for supplementary fields that you might want to add:
-
-Origin: <vendor|upstream|other>, <url of original patch>
-Bug: <url in upstream bugtracker>
-Bug-Debian: http://bugs.debian.org/<bugnumber>
-Bug-Ubuntu: https://launchpad.net/bugs/<bugnumber>
-Forwarded: <no|not-needed|url proving that it has been forwarded>
-Reviewed-By: <name and email of someone who approved the patch>
-Last-Update: <YYYY-MM-DD>
-
---- gdcm-2.2.0.orig/Wrapping/PHP/CMakeLists.txt
-+++ gdcm-2.2.0/Wrapping/PHP/CMakeLists.txt
-@@ -28,6 +28,7 @@ SET_SOURCE_FILES_PROPERTIES(gdcm.i PROPE
- # swig expect a name like that: php_gdcm.so
- SWIG_ADD_MODULE(php_gdcm php gdcm.i)
- SWIG_LINK_LIBRARIES(php_gdcm gdcmMSFF)
-+set_property(TARGET ${SWIG_MODULE_php_gdcm_REAL_NAME} PROPERTY NO_SONAME 1)
- 
- SET_TARGET_PROPERTIES(${SWIG_MODULE_php_gdcm_REAL_NAME} PROPERTIES LINK_INTERFACE_LIBRARIES "")
- # Remove 'lib' prefix :no-op on windows and valid for UNIX based syste
-@@ -51,11 +52,13 @@ ENDIF(UNIX)
- # See gdcm bug #3175803
- # This is fixed in SWIG 2.0.2:
- # http://sourceforge.net/tracker/?func=detail&atid=101645&aid=3166423&group_id=1645
--add_custom_command(TARGET ${SWIG_MODULE_php_gdcm_REAL_NAME}
--  PRE_BUILD
--  COMMAND sed -i -e 's/zend_error_noreturn/zend_error/g' "${swig_generated_file_fullname}"
--  COMMENT "Patching zend_error_noreturn into zend_error"
-+if(${SWIG_VERSION} LESS 2.0.2)
-+  add_custom_command(TARGET ${SWIG_MODULE_php_gdcm_REAL_NAME}
-+    PRE_BUILD
-+    COMMAND sed -i -e 's/zend_error_noreturn/zend_error/g' "${swig_generated_file_fullname}"
-+    COMMENT "Patching zend_error_noreturn into zend_error"
-   )
-+endif()
- 
- # Let's copy gdcm.php into the bin dir:
- ADD_CUSTOM_COMMAND(

Deleted: trunk/packages/gdcm/trunk/debian/patches/stableapi.patch
===================================================================
--- trunk/packages/gdcm/trunk/debian/patches/stableapi.patch	2012-09-20 08:22:00 UTC (rev 12240)
+++ trunk/packages/gdcm/trunk/debian/patches/stableapi.patch	2012-09-20 12:32:38 UTC (rev 12241)
@@ -1,62 +0,0 @@
-Index: gdcm-2.2.0/Utilities/VTK/CMakeLists.txt
-===================================================================
---- gdcm-2.2.0.orig/Utilities/VTK/CMakeLists.txt	2012-01-23 11:24:31.000000000 +0100
-+++ gdcm-2.2.0/Utilities/VTK/CMakeLists.txt	2012-01-23 11:24:33.000000000 +0100
-@@ -287,6 +287,10 @@
-     ${CMAKE_CURRENT_SOURCE_DIR}/AssemblyInfo.cs.in
-     ${CMAKE_CURRENT_BINARY_DIR}/AssemblyInfo.cs
-     @ONLY)
-+  CONFIGURE_FILE(
-+    ${GDCM_SOURCE_DIR}/Wrapping/Csharp/key.snk
-+    ${CMAKE_CURRENT_BINARY_DIR}/key.snk
-+    COPYONLY)
-   IF(GDCM_USE_ACTIVIZ)
-   ADD_CUSTOM_COMMAND(
-     OUTPUT ${GDCM_LIBRARY_DIR}/vtkgdcm-sharp.dll
-Index: gdcm-2.2.0/Wrapping/Csharp/AssemblyInfo.cs.in
-===================================================================
---- gdcm-2.2.0.orig/Wrapping/Csharp/AssemblyInfo.cs.in	2012-01-23 11:24:31.000000000 +0100
-+++ gdcm-2.2.0/Wrapping/Csharp/AssemblyInfo.cs.in	2012-01-23 11:24:33.000000000 +0100
-@@ -68,9 +68,9 @@
- // The following attributes specify the key for the sign of your assembly. See the
- // .NET Framework documentation for more information about signing.
- // This is not required, if you don't want signing let these attributes like they're.
--[assembly: AssemblyDelaySign(false)]
-+//[assembly: AssemblyDelaySign(false)]
- // http://msdn.microsoft.com/en-us/library/6f05ezxy(VS.80).aspx
--//[assembly: AssemblyKeyFile("key.snk")]
--[assembly: AssemblyKeyFile("")]
-+[assembly: AssemblyKeyFile("key.snk")]
-+//[assembly: AssemblyKeyFile("")]
- //[assembly: AssemblyKeyName("GDCM Key")]
--[assembly: AssemblyKeyName("")]
-+//[assembly: AssemblyKeyName("")]
-Index: gdcm-2.2.0/Utilities/VTK/AssemblyInfo.cs.in
-===================================================================
---- gdcm-2.2.0.orig/Utilities/VTK/AssemblyInfo.cs.in	2012-01-23 11:24:31.000000000 +0100
-+++ gdcm-2.2.0/Utilities/VTK/AssemblyInfo.cs.in	2012-01-23 11:24:33.000000000 +0100
-@@ -68,6 +68,6 @@
- // The following attributes specify the key for the sign of your assembly. See the
- // .NET Framework documentation for more information about signing.
- // This is not required, if you don't want signing let these attributes like they're.
--[assembly: AssemblyDelaySign(false)]
--[assembly: AssemblyKeyFile("")]
--[assembly: AssemblyKeyName("")]
-+//[assembly: AssemblyDelaySign(false)]
-+[assembly: AssemblyKeyFile("key.snk")]
-+//[assembly: AssemblyKeyName("")]
-Index: gdcm-2.2.0/Wrapping/Csharp/CMakeLists.txt
-===================================================================
---- gdcm-2.2.0.orig/Wrapping/Csharp/CMakeLists.txt	2012-01-23 11:24:40.000000000 +0100
-+++ gdcm-2.2.0/Wrapping/Csharp/CMakeLists.txt	2012-01-23 11:24:46.000000000 +0100
-@@ -135,6 +135,10 @@
-     ${CMAKE_CURRENT_SOURCE_DIR}/AssemblyInfo.cs.in
-     ${CMAKE_CURRENT_BINARY_DIR}/AssemblyInfo.cs
-     @ONLY)
-+  CONFIGURE_FILE(
-+    ${CMAKE_CURRENT_SOURCE_DIR}/key.snk
-+    ${CMAKE_CURRENT_BINARY_DIR}/key.snk
-+    COPYONLY)
- 
- # From Mirco Bauer on debian-cli
- # Hm? You wrote the C# binding for gdcm? Using C# in the lib name is

Modified: trunk/packages/gdcm/trunk/debian/patches/toplevelskip.patch
===================================================================
--- trunk/packages/gdcm/trunk/debian/patches/toplevelskip.patch	2012-09-20 08:22:00 UTC (rev 12240)
+++ trunk/packages/gdcm/trunk/debian/patches/toplevelskip.patch	2012-09-20 12:32:38 UTC (rev 12241)
@@ -1,3 +1,8 @@
+Description: fix in source builds
+ buildd machine wants insource build. upstream does not allow
+ insource build since it break cpack source packaging
+Author: Mathieu Malaterre <malat at debian.org>
+
 Index: gdcm-2.0.18/CMakeLists.txt
 ===================================================================
 --- gdcm-2.0.18.orig/CMakeLists.txt	2011-09-06 15:26:11.000000000 +0200

Modified: trunk/packages/gdcm/trunk/debian/rules
===================================================================
--- trunk/packages/gdcm/trunk/debian/rules	2012-09-20 08:22:00 UTC (rev 12240)
+++ trunk/packages/gdcm/trunk/debian/rules	2012-09-20 12:32:38 UTC (rev 12241)
@@ -128,4 +128,4 @@
 	sed -e"s/@PYVER@/$(PYVER)/g" -e "s/@DEB_MONO_ARCHS@/$(DEB_MONO_ARCHS)/g" $< > $@
 
 get-orig-source:
-	uscan --verbose --force-download
+	uscan --verbose --force-download --rename




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