[med-svn] r12243 - trunk/packages/gmod/gbrowse/trunk/debian

[Olivier Sallou]

Author: osallou
Date: 2012-09-20 12:47:40 +0000 (Thu, 20 Sep 2012)
New Revision: 12243

Added:
   trunk/packages/gmod/gbrowse/trunk/debian/gbrowse_import_ucsc_db.1
Log:
add missing man page for new release

Added: trunk/packages/gmod/gbrowse/trunk/debian/gbrowse_import_ucsc_db.1
===================================================================
--- trunk/packages/gmod/gbrowse/trunk/debian/gbrowse_import_ucsc_db.1	                        (rev 0)
+++ trunk/packages/gmod/gbrowse/trunk/debian/gbrowse_import_ucsc_db.1	2012-09-20 12:47:40 UTC (rev 12243)
@@ -0,0 +1,38 @@
+.TH GBrowse2 1  "February 07, 2011" "version 1.1.0" "USER COMMANDS"
+.SH NAME
+browse_import_ucsc_db \- Creates a framework data source
+.SH DESCRIPTION
+This creates a framework data source for one of the genomes known to
+the UCSC Genome Browser. You can then modify the data source
+configuration file, add your own data, and so forth. Provide the name
+of a UCSC genome build and optionally a description to display in
+GBrowse.
+
+To get started, find the desired data source by going to
+http://genome.ucsc.edu/cgi-bin/hgGateway and using the "clade" and
+"genome" menus to navigate to the desired species and build
+number. You will find the data source name in the blue box below the
+navigation controls. Look for something like this:
+
+ D. melanogaster Genome Browser – dm3 assembly (sequences)
+
+The data source name appears before the word "assembly", in this case
+"dm3".
+
+.SH USAGE
+[options] <UCSC genome build> [<Description>]
+.SH OPTIONS
+To get a list of all sources recognized by UCSC appears type:
+
+ browse_import_ucsc_db \-\-list
+
+Options:
+  \-\-remove-chr Remove the 'chr' prefix from all chromosome names
+  \-\-list       List data sources
+
+.SH EXAMPLE
+Example: $0 hg19 'Human genome (hg19)'
+
+.SH AUTHOR
+Olivier Sallou (olivier.sallou (at) irisa.fr) - Man page and packaging
+Lincoln Stein - GBrowse