[med-svn] r12284 - trunk/packages/gmod/gbrowse/trunk/debian/patches

[Olivier Sallou]

Author: osallou
Date: 2012-09-25 07:52:03 +0000 (Tue, 25 Sep 2012)
New Revision: 12284

Modified:
   trunk/packages/gmod/gbrowse/trunk/debian/patches/fix_pop_url
   trunk/packages/gmod/gbrowse/trunk/debian/patches/gbrowse-slave-fix_defaults_path
   trunk/packages/gmod/gbrowse/trunk/debian/patches/manpages.patch
   trunk/packages/gmod/gbrowse/trunk/debian/patches/skipRenderFarmTest_UpstreamBug12
Log:
fix dep3 headers

Modified: trunk/packages/gmod/gbrowse/trunk/debian/patches/fix_pop_url
===================================================================
--- trunk/packages/gmod/gbrowse/trunk/debian/patches/fix_pop_url	2012-09-25 07:30:17 UTC (rev 12283)
+++ trunk/packages/gmod/gbrowse/trunk/debian/patches/fix_pop_url	2012-09-25 07:52:03 UTC (rev 12284)
@@ -1,6 +1,8 @@
+Subject: update URL for default conf
 Author: Olivier Sallou <olivier.sallou at irisa.fr>
 Last-Update: 2011-08-08
 Description: update URL for details in example conf files to match /gb2 instead of cgi-bin/gb2
+Forwarded: not-needed
 --- a/conf/yeast_chr1+2.conf
 +++ b/conf/yeast_chr1+2.conf
 @@ -158,7 +158,7 @@

Modified: trunk/packages/gmod/gbrowse/trunk/debian/patches/gbrowse-slave-fix_defaults_path
===================================================================
--- trunk/packages/gmod/gbrowse/trunk/debian/patches/gbrowse-slave-fix_defaults_path	2012-09-25 07:30:17 UTC (rev 12283)
+++ trunk/packages/gmod/gbrowse/trunk/debian/patches/gbrowse-slave-fix_defaults_path	2012-09-25 07:52:03 UTC (rev 12284)
@@ -1,7 +1,7 @@
 Subject: fix default path on debian
 Author: Olivier Sallou <olivier.sallou at irisa.fr>
 Description: update path to be debian compliant, add description
-Last-Updated: 19/02/2012
+Last-Updated: 2012-02-19
 --- a/etc/init.d/gbrowse-slave
 +++ b/etc/init.d/gbrowse-slave
 @@ -1,11 +1,12 @@

Modified: trunk/packages/gmod/gbrowse/trunk/debian/patches/manpages.patch
===================================================================
--- trunk/packages/gmod/gbrowse/trunk/debian/patches/manpages.patch	2012-09-25 07:30:17 UTC (rev 12283)
+++ trunk/packages/gmod/gbrowse/trunk/debian/patches/manpages.patch	2012-09-25 07:52:03 UTC (rev 12284)
@@ -1,4 +1,9 @@
-Patch to correct POD-generated manual pages - Olivier Sallou - February 2011
+Subject: fix POD-generated manual pages
+Description: upstream pages contain errors
+Author: Olivier Sallou <osallou at debian.org>
+Last-Updated: 2012-09-25
+Forwaded: yes
+Bug: https://sourceforge.net/tracker/?func=detail&aid=3571433&group_id=27707&atid=391291
 --- a/bin/gtf2gff3.pl
 +++ b/bin/gtf2gff3.pl
 @@ -1320,7 +1320,7 @@
@@ -191,3 +196,21 @@
  =head2 generate_image
  
    ($url,$path) = generate_image($gd);
+--- a/bin/gbrowse_grow_cloud_vol.pl
++++ b/bin/gbrowse_grow_cloud_vol.pl
+@@ -2,13 +2,13 @@
+ 
+ =head1 NAME
+ 
+-gbrowse_grow_cloud-vol.pl     Grow the GBrowse volume by the requested amount
++gbrowse_grow_cloud-vol  \-  Grow the GBrowse volume by the requested amount
+ 
+ =head1 SYNOPSYS
+ 
+ Grow /opt/gbrowse by another 100 gigabytes
+ 
+-  % gbrowse_grow_cloud_vol.pl 100
++  % gbrowse_grow_cloud_vol 100
+ 
+ =head1 DESCRIPTION
+ 

Modified: trunk/packages/gmod/gbrowse/trunk/debian/patches/skipRenderFarmTest_UpstreamBug12
===================================================================
--- trunk/packages/gmod/gbrowse/trunk/debian/patches/skipRenderFarmTest_UpstreamBug12	2012-09-25 07:30:17 UTC (rev 12283)
+++ trunk/packages/gmod/gbrowse/trunk/debian/patches/skipRenderFarmTest_UpstreamBug12	2012-09-25 07:52:03 UTC (rev 12284)
@@ -4,7 +4,7 @@
  solve the issue. Runtime has been tested with no issue.
  This patch remove tests using renderfarm feature.
 Author: Olivier Sallou <osallou at debian.org>
-Last-Updated: 07/03/2012
+Last-Updated: 2012-03-07
 --- a/t/03.render.t
 +++ b/t/03.render.t
 @@ -16,9 +16,10 @@