[med-svn] r12302 - in trunk/packages/python-biopython/trunk/debian: . source

[Philipp Benner]

Author: philipp
Date: 2012-09-29 18:55:37 +0000 (Sat, 29 Sep 2012)
New Revision: 12302

Added:
   trunk/packages/python-biopython/trunk/debian/source/
   trunk/packages/python-biopython/trunk/debian/source/format
Removed:
   trunk/packages/python-biopython/trunk/debian/patches/
   trunk/packages/python-biopython/trunk/debian/pycompat
Modified:
   trunk/packages/python-biopython/trunk/debian/changelog
   trunk/packages/python-biopython/trunk/debian/compat
   trunk/packages/python-biopython/trunk/debian/control
   trunk/packages/python-biopython/trunk/debian/rules
Log:
release 1.60-1

Modified: trunk/packages/python-biopython/trunk/debian/changelog
===================================================================
--- trunk/packages/python-biopython/trunk/debian/changelog	2012-09-29 17:49:47 UTC (rev 12301)
+++ trunk/packages/python-biopython/trunk/debian/changelog	2012-09-29 18:55:37 UTC (rev 12302)
@@ -1,4 +1,4 @@
-python-biopython (1.59-2) UNRELEASED; urgency=low
+python-biopython (1.60-2) UNRELEASED; urgency=low
 
   * debian/upstream:
      - Took over citation information from tasks file
@@ -7,7 +7,18 @@
   * debian/control: Fixed Vcs fields
 
  -- Andreas Tille <tille at debian.org>  Thu, 29 Mar 2012 15:04:41 +0200
+  
+python-biopython (1.60-1) unstable; urgency=low
 
+  * New upstream release.
+  * Removed quilt dependency.
+  * Migrated to dh_python2.
+  * patches/01-enable-mmCIF.patch: not required anymore.
+  * debian/source/format: 3.0 (quilt) added.
+  * debian/rules: added hardening flags.
+
+ -- Philipp Benner <philipp at debian.org>  Sat, 29 Sep 2012 16:43:59 +0200
+
 python-biopython (1.59-1) unstable; urgency=low
 
   * New upstream release.

Modified: trunk/packages/python-biopython/trunk/debian/compat
===================================================================
--- trunk/packages/python-biopython/trunk/debian/compat	2012-09-29 17:49:47 UTC (rev 12301)
+++ trunk/packages/python-biopython/trunk/debian/compat	2012-09-29 18:55:37 UTC (rev 12302)
@@ -1 +1 @@
-7
+9

Modified: trunk/packages/python-biopython/trunk/debian/control
===================================================================
--- trunk/packages/python-biopython/trunk/debian/control	2012-09-29 17:49:47 UTC (rev 12301)
+++ trunk/packages/python-biopython/trunk/debian/control	2012-09-29 18:55:37 UTC (rev 12302)
@@ -5,11 +5,11 @@
 Uploaders: Philipp Benner <philipp at debian.org>,
            Charles Plessy <plessy at debian.org>,
            Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 7), quilt, python-all-dev, flex, python-support,
+Build-Depends: debhelper (>= 9), dpkg-dev (>= 1.16.1~), python-all (>= 2.6.6-3~), python-all-dev, flex,
  python-reportlab, python-numpy,
 # For the purpose of the tests
  python-mysqldb, wise
-XS-Python-Version: >= 2.3
+X-Python-Version: >= 2.5
 Standards-Version: 3.9.3
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/python-biopython/trunk/
 Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/python-biopython/trunk/
@@ -21,7 +21,6 @@
 Provides: ${python:Provides}
 Replaces: python2.3-biopython (<< 1.42-1), python2.4-biopython (<< 1.42-1)
 Conflicts: python2.3-biopython (<< 1.42-1), python2.4-biopython (<< 1.42-1)
-XB-Python-Version: ${python:Versions}
 Recommends: python-biopython-doc (= ${source:Version})
 Suggests: python-tk, wise, muscle, clustalw, mafft, emboss, blast2
 Description: Python library for bioinformatics
@@ -54,7 +53,6 @@
 Provides: ${python:Provides}
 Replaces: python2.3-biopython-sql (<< 1.42-1), python2.4-biopython-sql (<< 1.42-1)
 Conflicts: python2.3-biopython-sql (<< 1.42-1), python2.4-biopython-sql (<< 1.42-1)
-XB-Python-Version: ${python:Versions}
 Description: Biopython support for the BioSQL database schema
  This is the Biopython interface to a BioSQL database (see www.biosql.org
  for details). BioPerl, BioJava and BioRuby also provide their own BioSQL

Deleted: trunk/packages/python-biopython/trunk/debian/pycompat
===================================================================
--- trunk/packages/python-biopython/trunk/debian/pycompat	2012-09-29 17:49:47 UTC (rev 12301)
+++ trunk/packages/python-biopython/trunk/debian/pycompat	2012-09-29 18:55:37 UTC (rev 12302)
@@ -1 +0,0 @@
-2

Modified: trunk/packages/python-biopython/trunk/debian/rules
===================================================================
--- trunk/packages/python-biopython/trunk/debian/rules	2012-09-29 17:49:47 UTC (rev 12301)
+++ trunk/packages/python-biopython/trunk/debian/rules	2012-09-29 18:55:37 UTC (rev 12302)
@@ -1,6 +1,8 @@
 #!/usr/bin/make -f
 
-include /usr/share/quilt/quilt.make
+# hardening flags
+DPKG_EXPORT_BUILDFLAGS = 1
+include /usr/share/dpkg/buildflags.mk
 
 PWD    := $(shell pwd)
 PYDEF  := $(shell pyversions -d)
@@ -9,7 +11,7 @@
 build: build-arch build-indep
 build-arch: build-stamp
 build-indep: build-stamp
-build-stamp: patch $(PYVERS:%=build-%)
+build-stamp: $(PYVERS:%=build-%)
 	touch build-stamp
 build-python%:
 	echo $(DEB_HOST_ARCH)
@@ -26,7 +28,7 @@
 		     -ppython-biopython-sql	\
 		     --sourcedir=debian/python$*-tmp
 
-clean: unpatch $(PYVERS:%=clean-%)
+clean: $(PYVERS:%=clean-%)
 	dh_testdir
 	dh_testroot
 
@@ -60,7 +62,7 @@
 	dh_installchangelogs -i
 	dh_fixperms -i
 	dh_compress -i
-	dh_pysupport -i
+	dh_python2 -i
 	dh_numpy -i
 	dh_gencontrol -i
 	dh_md5sums -i
@@ -78,7 +80,7 @@
 ifeq (,$(findstring nostrip,$(DEB_BUILD_OPTIONS)))
 	dh_strip -a
 endif
-	dh_pysupport -a
+	dh_python2 -a
 	dh_numpy -a
 	dh_shlibdeps -a
 	dh_gencontrol -a

Added: trunk/packages/python-biopython/trunk/debian/source/format
===================================================================
--- trunk/packages/python-biopython/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/python-biopython/trunk/debian/source/format	2012-09-29 18:55:37 UTC (rev 12302)
@@ -0,0 +1 @@
+3.0 (quilt)