[med-svn] [SCM] r-bioc-biobase branch, meta, updated. meta/2.14.0-1-1-g2e104f8
Charles Plessy
plessy at debian.org
Thu Apr 11 04:48:27 UTC 2013
The following commit has been merged in the meta branch:
commit 2e104f8de2621455460b6ddd254676e9cf26f9b7
Author: Charles Plessy <plessy at debian.org>
Date: Thu Apr 11 13:47:10 2013 +0900
r-bioc-biobase (2.20.0-1) unstable; urgency=low
[ Andreas Tille ]
910457e debian/upstream: Added citations
[ Charles Plessy ]
910457e Imported Upstream version 2.20.0
d1f8572 No new copyright nor license notice in the new upstream versions.
4a880aa Using Debhelper 9
6861f53 Conforms with Policy version 3.9.4.
4a49c97 Normalised Debian copyright file with 'cme fix dpkg-copyright'.
4ce8c62 Removed obsolete field DM-Upload-Allowed.
64b2da7 Normalised debian/control with 'cme fix dpkg-control'.
c5c1206 Repaired Debian watch file.
d8c85b8 Normalised VCS URLs following Lintian's standard.
4a6818a Depend on r-bioc-biocgenerics (>= 0.3.2).
-- Charles Plessy <plessy at debian.org> Mon, 08 Apr 2013 13:00:55 +0900
diff --git a/amd64.changes b/amd64.changes
index bb4621c..cbb20b0 100644
--- a/amd64.changes
+++ b/amd64.changes
@@ -2,11 +2,11 @@
Hash: SHA256
Format: 1.8
-Date: Wed, 02 Nov 2011 13:52:04 +0900
+Date: Mon, 08 Apr 2013 13:00:55 +0900
Source: r-bioc-biobase
Binary: r-bioc-biobase
Architecture: source amd64
-Version: 2.14.0-1
+Version: 2.20.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -14,42 +14,52 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-biobase - base functions for Bioconductor
Changes:
- r-bioc-biobase (2.14.0-1) unstable; urgency=low
+ r-bioc-biobase (2.20.0-1) unstable; urgency=low
.
- [cb6b786] Bioconductor release 2.9.
- [d70e490] Build-Depend on R >= 2.10 according to DESCRIPTION.
- [ae99e35] Include 7 digits of the commit id in the changelog entry.
- [33b5d47] Compress binary package with xz.
+ [ Andreas Tille ]
+ 910457e debian/upstream: Added citations
+ .
+ [ Charles Plessy ]
+ 910457e Imported Upstream version 2.20.0
+ d1f8572 No new copyright nor license notice in the new upstream versions.
+ 4a880aa Using Debhelper 9
+ 6861f53 Conforms with Policy version 3.9.4.
+ 4a49c97 Normalised Debian copyright file with 'cme fix dpkg-copyright'.
+ 4ce8c62 Removed obsolete field DM-Upload-Allowed.
+ 64b2da7 Normalised debian/control with 'cme fix dpkg-control'.
+ c5c1206 Repaired Debian watch file.
+ d8c85b8 Normalised VCS URLs following Lintian's standard.
+ 4a6818a Depend on r-bioc-biocgenerics (>= 0.3.2).
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- e8fb421e517d96d48d08df80a1687a524601bd50 5645 r-bioc-biobase_2.14.0-1.diff.gz
- de6dd8f4eb63de38906027244d09a5865508b2c5 2311488 r-bioc-biobase_2.14.0-1_amd64.deb
+ 42593f6a8ab31689dac50822017ac2a77efa5153 2014 r-bioc-biobase_2.20.0-1.dsc
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Checksums-Sha256:
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- 966ccd6e9b8729264d1f1715dff274571b50cb8f650e6ade46997a6135ea792f 1926376 r-bioc-biobase_2.14.0.orig.tar.gz
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- 17dba58d775e98de74b964eb0ee69028d2b64e559688fb95334416400d3afb50 2311488 r-bioc-biobase_2.14.0-1_amd64.deb
+ f5d954cbecadb8fc70f41e2e426104938d452b7766afd474470a048fb8a43c0d 2014 r-bioc-biobase_2.20.0-1.dsc
+ 2eb6a90a3b08530ad08b3b5f7a2aebf365fbbca1810bc577ce1e4a753c3544c8 1846926 r-bioc-biobase_2.20.0.orig.tar.gz
+ 8f9930efb16bed2bd690ba9a99afdc779b8eb67cdf906ebc1228edd4fed61b13 6402 r-bioc-biobase_2.20.0-1.diff.gz
+ d7fdf5fe36b8cdd6b056ee40aee164f8b57f5879c7546fb56794d783d09f12d8 2197896 r-bioc-biobase_2.20.0-1_amd64.deb
Files:
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- e62df79e3f94d0e0544214ba49dc7030 1926376 gnu-r optional r-bioc-biobase_2.14.0.orig.tar.gz
- cdefbd9d3a2abe8f9e029be2b64f8d8d 5645 gnu-r optional r-bioc-biobase_2.14.0-1.diff.gz
- e25a000722284b6876a4df237e9bb1f4 2311488 gnu-r optional r-bioc-biobase_2.14.0-1_amd64.deb
+ 6e5191dfa4a7e3c56d1196e9a1c78dad 2014 gnu-r optional r-bioc-biobase_2.20.0-1.dsc
+ 225596bca2240821fe9ed546d9a91836 1846926 gnu-r optional r-bioc-biobase_2.20.0.orig.tar.gz
+ 689d563857556379aee7ba1e689d073c 6402 gnu-r optional r-bioc-biobase_2.20.0-1.diff.gz
+ 60a4aca0161dee95433a30b810928411 2197896 gnu-r optional r-bioc-biobase_2.20.0-1_amd64.deb
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diff --git a/amd64.log b/amd64.log
index ce63812..0ff03e7 100644
--- a/amd64.log
+++ b/amd64.log
@@ -1,26 +1,33 @@
-sbuild (Debian sbuild) 0.62.5 (13 Jul 2011) on anx191
+sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on anx191
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-biobase 2.14.0-1 (amd64) 02 Nov 2011 13:52 ║
+║ r-bioc-biobase 2.20.0-1 (amd64) 11 Apr 2013 13:39 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-biobase
-Version: 2.14.0-1
-Source Version: 2.14.0-1
+Version: 2.20.0-1
+Source Version: 2.20.0-1
Distribution: unstable
-Architecture: amd64
+Machine Architecture: amd64
+Host Architecture: amd64
+Build Architecture: amd64
-I: NOTICE: Log filtering will replace 'build/r-bioc-biobase-sHkKd3/r-bioc-biobase-2.14.0' with '«PKGBUILDDIR»'
-I: NOTICE: Log filtering will replace 'build/r-bioc-biobase-sHkKd3' with '«BUILDDIR»'
-I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-7fbe1793-6843-40a0-baa6-6a3229218014' with '«CHROOT»'
+I: NOTICE: Log filtering will replace 'build/r-bioc-biobase-Jtt50n/r-bioc-biobase-2.20.0' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/r-bioc-biobase-Jtt50n' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-a067d783-d4f0-4254-8d6a-876109cf8330' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
-Hit http://ftp.jp.debian.org sid InRelease
+Hit http://ftp.riken.jp sid Release.gpg
+Hit http://ftp.riken.jp sid Release
+Hit http://ftp.jp.debian.org sid Release.gpg
+Hit http://ftp.jp.debian.org sid Release
+Hit http://ftp.riken.jp sid/main amd64 Packages/DiffIndex
Hit http://ftp.jp.debian.org sid/main amd64 Packages/DiffIndex
-Hit http://ftp.jp.debian.org sid/main TranslationIndex
+Hit http://ftp.riken.jp sid/main Translation-en/DiffIndex
+Hit http://ftp.jp.debian.org sid/main Translation-en/DiffIndex
Reading package lists...
Reading package lists...
Building dependency tree...
@@ -35,14 +42,14 @@ Reading state information...
Local sources
─────────────
-r-bioc-biobase_2.14.0-1.dsc exists in .; copying to chroot
+r-bioc-biobase_2.20.0-1.dsc exists in .; copying to chroot
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
-dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-ta3ZMk/apt_archive/sbuild-build-depends-core-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-AX87qn/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
@@ -56,9 +63,9 @@ Building dependency tree...
Reading state information...
sbuild-build-depends-core-dummy is already the newest version.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
-Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev (>= 2.10)
-Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev (>= 2.10)
-dpkg-deb: building package `sbuild-build-depends-r-bioc-biobase-dummy' in `/«BUILDDIR»/resolver-3Rn59f/apt_archive/sbuild-build-depends-r-bioc-biobase-dummy.deb'.
+Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), r-base-dev, r-bioc-biocgenerics (>= 0.3.2)
+Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), r-base-dev, r-bioc-biocgenerics (>= 0.3.2)
+dpkg-deb: building package `sbuild-build-depends-r-bioc-biobase-dummy' in `/«BUILDDIR»/resolver-lQ8KsA/apt_archive/sbuild-build-depends-r-bioc-biobase-dummy.deb'.
OK
Reading package lists...
@@ -71,298 +78,393 @@ Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
- gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
- libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ cdbs debhelper file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.7 groff-base html2text intltool-debian libasprintf-dev
+ libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3
+ libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgettextpo-dev
+ libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev
- libsm6 libthai-data libthai0 libtiff4 libtinfo-dev libunistring0 libx11-6
+ libsm6 libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 libx11-6
libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
- r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
- zlib1g-dev
+ r-base-dev r-bioc-biocgenerics tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
Suggested packages:
- devscripts dh-make curl defoma gettext-doc gfortran-multilib gfortran-doc
- gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
+ devscripts dh-make gettext-doc gfortran-multilib gfortran-doc
+ gfortran-4.7-multilib gfortran-4.7-doc libgfortran3-dbg groff ncurses-doc
ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
- r-mathlib r-base-html tclreadline gvfs-bin
+ r-mathlib r-base-html texlive-base texlive-latex-base
+ texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
+ texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
+ texi2html tcl-tclreadline gvfs-bin
Recommended packages:
- autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
- x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
- xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+ autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
+ xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
+ x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
- cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
- gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
- libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ cdbs debhelper file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.7 groff-base html2text intltool-debian libasprintf-dev
+ libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3
+ libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgettextpo-dev
+ libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev
- libsm6 libthai-data libthai0 libtiff4 libtinfo-dev libunistring0 libx11-6
+ libsm6 libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 libx11-6
libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
- r-base-dev sbuild-build-depends-r-bioc-biobase-dummy tcl8.5 tk8.5
- ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+ r-base-dev r-bioc-biocgenerics sbuild-build-depends-r-bioc-biobase-dummy
+ tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+0 upgraded, 81 newly installed, 0 to remove and 0 not upgraded.
+Need to get 59.6 MB/60.6 MB of archives.
+After this operation, 132 MB of additional disk space will be used.
+Get:1 http://ftp.jp.debian.org/debian/ sid/main r-bioc-biocgenerics all 0.6.0-1 [339 kB]
+Get:2 http://ftp.riken.jp/Linux/debian/debian/ sid/main libpipeline1 amd64 1.2.2-2 [40.0 kB]
+Get:3 http://ftp.riken.jp/Linux/debian/debian/ sid/main groff-base amd64 1.22.2-2 [743 kB]
+Get:4 http://ftp.riken.jp/Linux/debian/debian/ sid/main man-db amd64 2.6.3-3 [898 kB]
+Get:5 http://ftp.riken.jp/Linux/debian/debian/ sid/main libmagic1 amd64 1:5.11-3 [202 kB]
+Get:6 http://ftp.riken.jp/Linux/debian/debian/ sid/main libpcre3 amd64 1:8.31-2 [247 kB]
+Get:7 http://ftp.riken.jp/Linux/debian/debian/ sid/main libxml2 amd64 2.8.0+dfsg1-7+nmu1 [904 kB]
+Get:8 http://ftp.riken.jp/Linux/debian/debian/ sid/main libexpat1 amd64 2.1.0-1 [141 kB]
+Get:9 http://ftp.riken.jp/Linux/debian/debian/ sid/main libfreetype6 amd64 2.4.9-1.1 [451 kB]
+Get:10 http://ftp.riken.jp/Linux/debian/debian/ sid/main ttf-dejavu-core all 2.33-3 [1021 kB]
+Get:11 http://ftp.riken.jp/Linux/debian/debian/ sid/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:12 http://ftp.riken.jp/Linux/debian/debian/ sid/main libfontconfig1 amd64 2.9.0-7.1 [300 kB]
+Get:13 http://ftp.riken.jp/Linux/debian/debian/ sid/main libpixman-1-0 amd64 0.26.0-4 [427 kB]
+Get:14 http://ftp.riken.jp/Linux/debian/debian/ sid/main libxau6 amd64 1:1.0.7-1 [18.8 kB]
+Get:15 http://ftp.riken.jp/Linux/debian/debian/ sid/main libxdmcp6 amd64 1:1.1.1-1 [26.3 kB]
+Get:16 http://ftp.riken.jp/Linux/debian/debian/ sid/main libxcb1 amd64 1.8.1-2 [50.1 kB]
+Get:17 http://ftp.riken.jp/Linux/debian/debian/ sid/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:18 http://ftp.riken.jp/Linux/debian/debian/ sid/main libx11-6 amd64 2:1.5.0-1 [901 kB]
+Get:19 http://ftp.riken.jp/Linux/debian/debian/ sid/main libxcb-render0 amd64 1.8.1-2 [18.5 kB]
+Get:20 http://ftp.riken.jp/Linux/debian/debian/ sid/main libxcb-shm0 amd64 1.8.1-2 [10.3 kB]
+Get:21 http://ftp.riken.jp/Linux/debian/debian/ sid/main libxrender1 amd64 1:0.9.7-1 [32.2 kB]
+Get:22 http://ftp.riken.jp/Linux/debian/debian/ sid/main libcairo2 amd64 1.12.2-3 [912 kB]
+Get:23 http://ftp.riken.jp/Linux/debian/debian/ sid/main libglib2.0-0 amd64 2.33.12+really2.32.4-5 [1838 kB]
+Get:24 http://ftp.riken.jp/Linux/debian/debian/ sid/main libcroco3 amd64 0.6.6-2 [134 kB]
+Get:25 http://ftp.riken.jp/Linux/debian/debian/ sid/main libdatrie1 amd64 0.2.5-3 [28.6 kB]
+Get:26 http://ftp.riken.jp/Linux/debian/debian/ sid/main libgettextpo0 amd64 0.18.1.1-10 [145 kB]
+Get:27 http://ftp.riken.jp/Linux/debian/debian/ sid/main libgfortran3 amd64 4.7.2-5 [351 kB]
+Get:28 http://ftp.riken.jp/Linux/debian/debian/ sid/main x11-common all 1:7.7+2 [284 kB]
+Get:29 http://ftp.riken.jp/Linux/debian/debian/ sid/main libice6 amd64 2:1.0.8-2 [63.1 kB]
+Get:30 http://ftp.riken.jp/Linux/debian/debian/ sid/main libjpeg8 amd64 8d-1 [134 kB]
+Get:31 http://ftp.riken.jp/Linux/debian/debian/ sid/main libthai-data all 0.1.18-2 [154 kB]
+Get:32 http://ftp.riken.jp/Linux/debian/debian/ sid/main libthai0 amd64 0.1.18-2 [42.3 kB]
+Get:33 http://ftp.riken.jp/Linux/debian/debian/ sid/main libxft2 amd64 2.3.1-1 [61.0 kB]
+Get:34 http://ftp.riken.jp/Linux/debian/debian/ sid/main fontconfig amd64 2.9.0-7.1 [348 kB]
+Get:35 http://ftp.riken.jp/Linux/debian/debian/ sid/main libpango1.0-0 amd64 1.30.0-1 [461 kB]
+Get:36 http://ftp.riken.jp/Linux/debian/debian/ sid/main libpaper1 amd64 1.1.24+nmu2 [22.0 kB]
+Get:37 http://ftp.riken.jp/Linux/debian/debian/ sid/main libpcrecpp0 amd64 1:8.31-2 [128 kB]
+Get:38 http://ftp.riken.jp/Linux/debian/debian/ sid/main libsm6 amd64 2:1.2.1-2 [34.2 kB]
+Get:39 http://ftp.riken.jp/Linux/debian/debian/ sid/main libjbig0 amd64 2.0-2 [32.2 kB]
+Get:40 http://ftp.riken.jp/Linux/debian/debian/ sid/main libtiff5 amd64 4.0.2-6 [234 kB]
+Get:41 http://ftp.riken.jp/Linux/debian/debian/ sid/main libxext6 amd64 2:1.3.1-2 [55.3 kB]
+Get:42 http://ftp.riken.jp/Linux/debian/debian/ sid/main libxss1 amd64 1:1.2.2-1 [17.5 kB]
+Get:43 http://ftp.riken.jp/Linux/debian/debian/ sid/main libxt6 amd64 1:1.1.3-1 [211 kB]
+Get:44 http://ftp.riken.jp/Linux/debian/debian/ sid/main file amd64 1:5.11-3 [52.0 kB]
+Get:45 http://ftp.riken.jp/Linux/debian/debian/ sid/main cdbs all 0.4.121 [80.5 kB]
+Get:46 http://ftp.riken.jp/Linux/debian/debian/ sid/main libasprintf-dev amd64 0.18.1.1-10 [26.8 kB]
+Get:47 http://ftp.riken.jp/Linux/debian/debian/ sid/main libgettextpo-dev amd64 0.18.1.1-10 [184 kB]
+Get:48 http://ftp.riken.jp/Linux/debian/debian/ sid/main gettext amd64 0.18.1.1-10 [1815 kB]
+Get:49 http://ftp.riken.jp/Linux/debian/debian/ sid/main debhelper all 9.20120909 [705 kB]
+Get:50 http://ftp.riken.jp/Linux/debian/debian/ sid/main gfortran-4.7 amd64 4.7.2-5 [6173 kB]
+Get:51 http://ftp.riken.jp/Linux/debian/debian/ sid/main gfortran amd64 4:4.7.2-1 [1130 B]
+Get:52 http://ftp.riken.jp/Linux/debian/debian/ sid/main libblas3 amd64 1.2.20110419-5 [293 kB]
+Get:53 http://ftp.riken.jp/Linux/debian/debian/ sid/main libblas-dev amd64 1.2.20110419-5 [312 kB]
+Get:54 http://ftp.riken.jp/Linux/debian/debian/ sid/main libbz2-dev amd64 1.0.6-4 [32.8 kB]
+Get:55 http://ftp.riken.jp/Linux/debian/debian/ sid/main libjpeg8-dev amd64 8d-1 [242 kB]
+Get:56 http://ftp.riken.jp/Linux/debian/debian/ sid/main liblapack3 amd64 3.4.1+dfsg-1 [5036 kB]
+Get:57 http://ftp.riken.jp/Linux/debian/debian/ sid/main liblapack-dev amd64 3.4.1+dfsg-1 [5549 kB]
+Get:58 http://ftp.riken.jp/Linux/debian/debian/ sid/main libtinfo-dev amd64 5.9-10 [105 kB]
+Get:59 http://ftp.riken.jp/Linux/debian/debian/ sid/main libncurses5-dev amd64 5.9-10 [223 kB]
+Get:60 http://ftp.riken.jp/Linux/debian/debian/ sid/main libpaper-utils amd64 1.1.24+nmu2 [18.3 kB]
+Get:61 http://ftp.riken.jp/Linux/debian/debian/ sid/main libpcre3-dev amd64 1:8.31-2 [356 kB]
+Get:62 http://ftp.riken.jp/Linux/debian/debian/ sid/main zlib1g-dev amd64 1:1.2.7.dfsg-13 [215 kB]
+Get:63 http://ftp.riken.jp/Linux/debian/debian/ sid/main libpng12-dev amd64 1.2.49-3 [267 kB]
+Get:64 http://ftp.riken.jp/Linux/debian/debian/ sid/main libreadline6-dev amd64 6.2+dfsg-0.1 [193 kB]
+Get:65 http://ftp.riken.jp/Linux/debian/debian/ sid/main libreadline-dev amd64 6.2+dfsg-0.1 [896 B]
+Get:66 http://ftp.riken.jp/Linux/debian/debian/ sid/main zip amd64 3.0-7 [336 kB]
+Get:67 http://ftp.riken.jp/Linux/debian/debian/ sid/main unzip amd64 6.0-9 [194 kB]
+Get:68 http://ftp.riken.jp/Linux/debian/debian/ sid/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:69 http://ftp.riken.jp/Linux/debian/debian/ sid/main tcl8.5 amd64 8.5.11-2 [1627 kB]
+Get:70 http://ftp.riken.jp/Linux/debian/debian/ sid/main tk8.5 amd64 8.5.11-2 [1189 kB]
+Get:71 http://ftp.riken.jp/Linux/debian/debian/ sid/main r-base-core amd64 3.0.0-2 [21.4 MB]
+Get:72 http://ftp.riken.jp/Linux/debian/debian/ sid/main r-base-dev all 3.0.0-2 [3900 B]
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 75 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/56.9 MB of archives.
-After this operation, 128 MB of additional disk space will be used.
-Selecting previously unselected package libpipeline1.
-(Reading database ... 10887 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_amd64.deb) ...
-Selecting previously unselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-4_amd64.deb) ...
-Selecting previously unselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_amd64.deb) ...
-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_amd64.deb) ...
-Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-2_amd64.deb) ...
-Selecting previously unselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_amd64.deb) ...
-Selecting previously unselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7.1_amd64.deb) ...
-Selecting previously unselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_amd64.deb) ...
+Fetched 59.6 MB in 7s (7669 kB/s)
+Selecting previously unselected package libpipeline1:amd64.
+(Reading database ... 10985 files and directories currently installed.)
+Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.2-2_amd64.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.22.2-2_amd64.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.3-3_amd64.deb) ...
+Selecting previously unselected package libasprintf0c2:amd64.
+Unpacking libasprintf0c2:amd64 (from .../libasprintf0c2_0.18.1.1-10_amd64.deb) ...
+Selecting previously unselected package libmagic1:amd64.
+Unpacking libmagic1:amd64 (from .../libmagic1_1%3a5.11-3_amd64.deb) ...
+Selecting previously unselected package libpcre3:amd64.
+Unpacking libpcre3:amd64 (from .../libpcre3_1%3a8.31-2_amd64.deb) ...
+Selecting previously unselected package libxml2:amd64.
+Unpacking libxml2:amd64 (from .../libxml2_2.8.0+dfsg1-7+nmu1_amd64.deb) ...
+Selecting previously unselected package libexpat1:amd64.
+Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-1_amd64.deb) ...
+Selecting previously unselected package libfreetype6:amd64.
+Unpacking libfreetype6:amd64 (from .../libfreetype6_2.4.9-1.1_amd64.deb) ...
Selecting previously unselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ...
Moving old data out of the way
Selecting previously unselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-3_all.deb) ...
Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
-Selecting previously unselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_amd64.deb) ...
-Selecting previously unselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.2-3_amd64.deb) ...
-Selecting previously unselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
-Selecting previously unselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-2_amd64.deb) ...
-Selecting previously unselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_amd64.deb) ...
-Selecting previously unselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_amd64.deb) ...
-Selecting previously unselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_amd64.deb) ...
-Selecting previously unselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-3_amd64.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ...
+Selecting previously unselected package libfontconfig1:amd64.
+Unpacking libfontconfig1:amd64 (from .../libfontconfig1_2.9.0-7.1_amd64.deb) ...
+Selecting previously unselected package libpixman-1-0:amd64.
+Unpacking libpixman-1-0:amd64 (from .../libpixman-1-0_0.26.0-4_amd64.deb) ...
+Selecting previously unselected package libxau6:amd64.
+Unpacking libxau6:amd64 (from .../libxau6_1%3a1.0.7-1_amd64.deb) ...
+Selecting previously unselected package libxdmcp6:amd64.
+Unpacking libxdmcp6:amd64 (from .../libxdmcp6_1%3a1.1.1-1_amd64.deb) ...
+Selecting previously unselected package libxcb1:amd64.
+Unpacking libxcb1:amd64 (from .../libxcb1_1.8.1-2_amd64.deb) ...
Selecting previously unselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
-Selecting previously unselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_amd64.deb) ...
-Selecting previously unselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_amd64.deb) ...
-Selecting previously unselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_amd64.deb) ...
-Selecting previously unselected package libxrender1.
-Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_amd64.deb) ...
-Selecting previously unselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_amd64.deb) ...
+Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ...
+Selecting previously unselected package libx11-6:amd64.
+Unpacking libx11-6:amd64 (from .../libx11-6_2%3a1.5.0-1_amd64.deb) ...
+Selecting previously unselected package libxcb-render0:amd64.
+Unpacking libxcb-render0:amd64 (from .../libxcb-render0_1.8.1-2_amd64.deb) ...
+Selecting previously unselected package libxcb-shm0:amd64.
+Unpacking libxcb-shm0:amd64 (from .../libxcb-shm0_1.8.1-2_amd64.deb) ...
+Selecting previously unselected package libxrender1:amd64.
+Unpacking libxrender1:amd64 (from .../libxrender1_1%3a0.9.7-1_amd64.deb) ...
+Selecting previously unselected package libcairo2:amd64.
+Unpacking libcairo2:amd64 (from .../libcairo2_1.12.2-3_amd64.deb) ...
+Selecting previously unselected package libffi5:amd64.
+Unpacking libffi5:amd64 (from .../libffi5_3.0.10-3_amd64.deb) ...
+Selecting previously unselected package libglib2.0-0:amd64.
+Unpacking libglib2.0-0:amd64 (from .../libglib2.0-0_2.33.12+really2.32.4-5_amd64.deb) ...
+Selecting previously unselected package libcroco3:amd64.
+Unpacking libcroco3:amd64 (from .../libcroco3_0.6.6-2_amd64.deb) ...
+Selecting previously unselected package libdatrie1:amd64.
+Unpacking libdatrie1:amd64 (from .../libdatrie1_0.2.5-3_amd64.deb) ...
+Selecting previously unselected package libunistring0:amd64.
+Unpacking libunistring0:amd64 (from .../libunistring0_0.9.3-5_amd64.deb) ...
+Selecting previously unselected package libgettextpo0:amd64.
+Unpacking libgettextpo0:amd64 (from .../libgettextpo0_0.18.1.1-10_amd64.deb) ...
+Selecting previously unselected package libgfortran3:amd64.
+Unpacking libgfortran3:amd64 (from .../libgfortran3_4.7.2-5_amd64.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.7+2_all.deb) ...
+Selecting previously unselected package libice6:amd64.
+Unpacking libice6:amd64 (from .../libice6_2%3a1.0.8-2_amd64.deb) ...
+Selecting previously unselected package libjpeg8:amd64.
+Unpacking libjpeg8:amd64 (from .../libjpeg8_8d-1_amd64.deb) ...
Selecting previously unselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
-Selecting previously unselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-2_amd64.deb) ...
-Selecting previously unselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-3_amd64.deb) ...
+Unpacking libthai-data (from .../libthai-data_0.1.18-2_all.deb) ...
+Selecting previously unselected package libthai0:amd64.
+Unpacking libthai0:amd64 (from .../libthai0_0.1.18-2_amd64.deb) ...
+Selecting previously unselected package libxft2:amd64.
+Unpacking libxft2:amd64 (from .../libxft2_2.3.1-1_amd64.deb) ...
Selecting previously unselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-3_amd64.deb) ...
-Selecting previously unselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_amd64.deb) ...
-Selecting previously unselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_amd64.deb) ...
-Selecting previously unselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_amd64.deb) ...
-Selecting previously unselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_amd64.deb) ...
-Selecting previously unselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-2_amd64.deb) ...
-Selecting previously unselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-5_amd64.deb) ...
-Selecting previously unselected package libxext6.
-Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_amd64.deb) ...
-Selecting previously unselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_amd64.deb) ...
-Selecting previously unselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_amd64.deb) ...
-Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-6_amd64.deb) ...
-Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-2_amd64.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.09-2_amd64.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_amd64.deb) ...
+Selecting previously unselected package libpango1.0-0:amd64.
+Unpacking libpango1.0-0:amd64 (from .../libpango1.0-0_1.30.0-1_amd64.deb) ...
+Selecting previously unselected package libpaper1:amd64.
+Unpacking libpaper1:amd64 (from .../libpaper1_1.1.24+nmu2_amd64.deb) ...
+Selecting previously unselected package libpcrecpp0:amd64.
+Unpacking libpcrecpp0:amd64 (from .../libpcrecpp0_1%3a8.31-2_amd64.deb) ...
+Selecting previously unselected package libsm6:amd64.
+Unpacking libsm6:amd64 (from .../libsm6_2%3a1.2.1-2_amd64.deb) ...
+Selecting previously unselected package libjbig0:amd64.
+Unpacking libjbig0:amd64 (from .../libjbig0_2.0-2_amd64.deb) ...
+Selecting previously unselected package libtiff5:amd64.
+Unpacking libtiff5:amd64 (from .../libtiff5_4.0.2-6_amd64.deb) ...
+Selecting previously unselected package libxext6:amd64.
+Unpacking libxext6:amd64 (from .../libxext6_2%3a1.3.1-2_amd64.deb) ...
+Selecting previously unselected package libxss1:amd64.
+Unpacking libxss1:amd64 (from .../libxss1_1%3a1.2.2-1_amd64.deb) ...
+Selecting previously unselected package libxt6:amd64.
+Unpacking libxt6:amd64 (from .../libxt6_1%3a1.1.3-1_amd64.deb) ...
Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.09-2_amd64.deb) ...
+Unpacking file (from .../file_1%3a5.11-3_amd64.deb) ...
Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_amd64.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_amd64.deb) ...
Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ...
+Selecting previously unselected package libasprintf-dev:amd64.
+Unpacking libasprintf-dev:amd64 (from .../libasprintf-dev_0.18.1.1-10_amd64.deb) ...
+Selecting previously unselected package libgettextpo-dev:amd64.
+Unpacking libgettextpo-dev:amd64 (from .../libgettextpo-dev_0.18.1.1-10_amd64.deb) ...
Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-5_amd64.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-10_amd64.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
-Selecting previously unselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
-Selecting previously unselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-3_amd64.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120909_all.deb) ...
+Selecting previously unselected package gfortran-4.7.
+Unpacking gfortran-4.7 (from .../gfortran-4.7_4.7.2-5_amd64.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_amd64.deb) ...
-Selecting previously unselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_amd64.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.7.2-1_amd64.deb) ...
+Selecting previously unselected package libblas3.
+Unpacking libblas3 (from .../libblas3_1.2.20110419-5_amd64.deb) ...
Selecting previously unselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_amd64.deb) ...
-Selecting previously unselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_amd64.deb) ...
-Selecting previously unselected package libjpeg8-dev.
-Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_amd64.deb) ...
-Selecting previously unselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_amd64.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_amd64.deb) ...
+Selecting previously unselected package libbz2-dev:amd64.
+Unpacking libbz2-dev:amd64 (from .../libbz2-dev_1.0.6-4_amd64.deb) ...
+Selecting previously unselected package libjpeg8-dev:amd64.
+Unpacking libjpeg8-dev:amd64 (from .../libjpeg8-dev_8d-1_amd64.deb) ...
+Selecting previously unselected package liblapack3.
+Unpacking liblapack3 (from .../liblapack3_3.4.1+dfsg-1_amd64.deb) ...
Selecting previously unselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_amd64.deb) ...
-Selecting previously unselected package libtinfo-dev.
-Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-3_amd64.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.4.1+dfsg-1_amd64.deb) ...
+Selecting previously unselected package libtinfo-dev:amd64.
+Unpacking libtinfo-dev:amd64 (from .../libtinfo-dev_5.9-10_amd64.deb) ...
Selecting previously unselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-3_amd64.deb) ...
-Selecting previously unselected package libpaper1.
-Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_amd64.deb) ...
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-10_amd64.deb) ...
Selecting previously unselected package libpaper-utils.
-Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_amd64.deb) ...
-Selecting previously unselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_amd64.deb) ...
-Selecting previously unselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_amd64.deb) ...
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_amd64.deb) ...
+Selecting previously unselected package libpcre3-dev:amd64.
+Unpacking libpcre3-dev:amd64 (from .../libpcre3-dev_1%3a8.31-2_amd64.deb) ...
+Selecting previously unselected package zlib1g-dev:amd64.
+Unpacking zlib1g-dev:amd64 (from .../zlib1g-dev_1%3a1.2.7.dfsg-13_amd64.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_amd64.deb) ...
-Selecting previously unselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_amd64.deb) ...
-Selecting previously unselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_amd64.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-3_amd64.deb) ...
+Selecting previously unselected package libreadline6-dev:amd64.
+Unpacking libreadline6-dev:amd64 (from .../libreadline6-dev_6.2+dfsg-0.1_amd64.deb) ...
+Selecting previously unselected package libreadline-dev:amd64.
+Unpacking libreadline-dev:amd64 (from .../libreadline-dev_6.2+dfsg-0.1_amd64.deb) ...
Selecting previously unselected package zip.
-Unpacking zip (from .../archives/zip_3.0-4_amd64.deb) ...
+Unpacking zip (from .../archives/zip_3.0-7_amd64.deb) ...
Selecting previously unselected package unzip.
-Unpacking unzip (from .../archives/unzip_6.0-5_amd64.deb) ...
+Unpacking unzip (from .../archives/unzip_6.0-9_amd64.deb) ...
Selecting previously unselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
Selecting previously unselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_amd64.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_amd64.deb) ...
Selecting previously unselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.10-1_amd64.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_amd64.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.14.0-1_amd64.deb) ...
+Unpacking r-base-core (from .../r-base-core_3.0.0-2_amd64.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
+Unpacking r-base-dev (from .../r-base-dev_3.0.0-2_all.deb) ...
+Selecting previously unselected package r-bioc-biocgenerics.
+Unpacking r-bioc-biocgenerics (from .../r-bioc-biocgenerics_0.6.0-1_all.deb) ...
Selecting previously unselected package sbuild-build-depends-r-bioc-biobase-dummy.
Unpacking sbuild-build-depends-r-bioc-biobase-dummy (from .../sbuild-build-depends-r-bioc-biobase-dummy.deb) ...
-Setting up libpipeline1 (1.2.0-4) ...
-Setting up libpcre3 (8.12-4) ...
-Setting up libglib2.0-0 (2.28.8-1) ...
+Setting up libpipeline1:amd64 (1.2.2-2) ...
+Setting up groff-base (1.22.2-2) ...
+Setting up man-db (2.6.3-3) ...
+Building database of manual pages ...
+Setting up libasprintf0c2:amd64 (0.18.1.1-10) ...
+Setting up libmagic1:amd64 (1:5.11-3) ...
+Setting up libpcre3:amd64 (1:8.31-2) ...
+Setting up libxml2:amd64 (2.8.0+dfsg1-7+nmu1) ...
+Setting up libexpat1:amd64 (2.1.0-1) ...
+Setting up libfreetype6:amd64 (2.4.9-1.1) ...
+Setting up ucf (3.0025+nmu3) ...
+Setting up ttf-dejavu-core (2.33-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:amd64 (2.9.0-7.1) ...
+Setting up libpixman-1-0:amd64 (0.26.0-4) ...
+Setting up libxau6:amd64 (1:1.0.7-1) ...
+Setting up libxdmcp6:amd64 (1:1.1.1-1) ...
+Setting up libxcb1:amd64 (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:amd64 (2:1.5.0-1) ...
+Setting up libxcb-render0:amd64 (1.8.1-2) ...
+Setting up libxcb-shm0:amd64 (1.8.1-2) ...
+Setting up libxrender1:amd64 (1:0.9.7-1) ...
+Setting up libcairo2:amd64 (1.12.2-3) ...
+Setting up libffi5:amd64 (3.0.10-3) ...
+Setting up libglib2.0-0:amd64 (2.33.12+really2.32.4-5) ...
No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-5) ...
-Setting up libcroco3 (0.6.2-2) ...
-Setting up libdatrie1 (0.2.4-3) ...
-Setting up libexpat1 (2.0.1-7.1) ...
-Setting up libfreetype6 (2.4.7-2) ...
-Setting up ucf (3.0025+nmu2) ...
-Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3) ...
-Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.2-3) ...
-Setting up x11-common (1:7.6+9) ...
+Setting up libcroco3:amd64 (0.6.6-2) ...
+Setting up libdatrie1:amd64 (0.2.5-3) ...
+Setting up libunistring0:amd64 (0.9.3-5) ...
+Setting up libgettextpo0:amd64 (0.18.1.1-10) ...
+Setting up libgfortran3:amd64 (4.7.2-5) ...
+Setting up x11-common (1:7.7+2) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.23.8-1) ...
-Setting up libxau6 (1:1.0.6-3) ...
-Setting up libxdmcp6 (1:1.1.0-3) ...
-Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-2) ...
-Setting up libx11-6 (2:1.4.4-2) ...
-Setting up libxcb-render0 (1.7-3) ...
-Setting up libxcb-shm0 (1.7-3) ...
-Setting up libxrender1 (1:0.9.6-2) ...
-Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libthai-data (0.1.15-2) ...
-Setting up libthai0 (0.1.15-2) ...
-Setting up libxft2 (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3) ...
-Cleaning up old fontconfig caches... done.
+Setting up libice6:amd64 (2:1.0.8-2) ...
+Setting up libjpeg8:amd64 (8d-1) ...
+Setting up libthai-data (0.1.18-2) ...
+Setting up libthai0:amd64 (0.1.18-2) ...
+Setting up libxft2:amd64 (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.29.4-2) ...
-Setting up libpcrecpp0 (8.12-4) ...
-Setting up libsm6 (2:1.2.0-2) ...
-Setting up libjpeg8 (8c-2) ...
-Setting up libtiff4 (3.9.5-2) ...
-Setting up libunistring0 (0.9.3-5) ...
-Setting up libxext6 (2:1.3.0-3) ...
-Setting up libxss1 (1:1.2.1-2) ...
-Setting up libxt6 (1:1.1.1-2) ...
-Setting up groff-base (1.21-6) ...
-Setting up man-db (2.6.0.2-2) ...
-Building database of manual pages ...
-Setting up libmagic1 (5.09-2) ...
-Setting up file (5.09-2) ...
-Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.99) ...
-Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-5) ...
-Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.8) ...
-Setting up dpatch (2.0.33) ...
-Setting up gfortran-4.6 (4.6.2-3) ...
-Setting up gfortran (4:4.6.1-3) ...
-update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-7) ...
-Setting up libjpeg8-dev (8c-2) ...
-Setting up liblapack3gf (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev (5.9-3) ...
-Setting up libncurses5-dev (5.9-3) ...
-Setting up libpaper1 (1.1.24+nmu1) ...
+Setting up libpango1.0-0:amd64 (1.30.0-1) ...
+Setting up libpaper1:amd64 (1.1.24+nmu2) ...
Creating config file /etc/papersize with new version
-Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcre3-dev (8.12-4) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-7) ...
-Setting up libreadline-dev (6.2-7) ...
-Setting up zip (3.0-4) ...
-Setting up unzip (6.0-5) ...
-Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.10-1) ...
-update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.10-1) ...
-update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.14.0-1) ...
-Setting R_PAPERSIZE_USER default to 'a4'
+Setting up libpcrecpp0:amd64 (1:8.31-2) ...
+Setting up libsm6:amd64 (2:1.2.1-2) ...
+Setting up libjbig0:amd64 (2.0-2) ...
+Setting up libtiff5:amd64 (4.0.2-6) ...
+Setting up libxext6:amd64 (2:1.3.1-2) ...
+Setting up libxss1:amd64 (1:1.2.2-1) ...
+Setting up libxt6:amd64 (1:1.1.3-1) ...
+Setting up file (1:5.11-3) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libasprintf-dev:amd64 (0.18.1.1-10) ...
+Setting up libgettextpo-dev:amd64 (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20120909) ...
+Setting up gfortran-4.7 (4.7.2-5) ...
+Setting up gfortran (4:4.7.2-1) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:amd64 (1.0.6-4) ...
+Setting up libjpeg8-dev:amd64 (8d-1) ...
+Setting up liblapack3 (3.4.1+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.1+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:amd64 (5.9-10) ...
+Setting up libncurses5-dev (5.9-10) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:amd64 (1:8.31-2) ...
+Setting up zlib1g-dev:amd64 (1:1.2.7.dfsg-13) ...
+Setting up libpng12-dev (1.2.49-3) ...
+Setting up libreadline6-dev:amd64 (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:amd64 (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.0-2) ...
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.14.0-1) ...
+Setting up r-base-dev (3.0.0-2) ...
+Setting up r-bioc-biocgenerics (0.6.0-1) ...
Setting up sbuild-build-depends-r-bioc-biobase-dummy (0.invalid.0) ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
-Kernel: Linux 2.6.39-bpo.2-amd64 amd64 (x86_64)
-Toolchain package versions: binutils_2.21.90.20111025-1 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-3 gcc-4.6_4.6.2-3 libc6-dev_2.13-21 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 linux-libc-dev_3.0.0-5
-Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111025-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-3 dash_0.5.7-2 debconf_1.5.41 debconf-i18n_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-3 gcc_4:4.6.1-3 gcc-4.6_4.6.2-3 gcc-4.6-base_4.6.2-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libclass-isa-perl_0.36-2 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.1 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-3 libgdbm3_1.8.3-10 libgfortran3_4.6.2-3 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-3 libgpm2_1.20.4-4 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-3 libncurses5-dev_5.9-3 libpam-modules_1.1.3-5 libpam-modules-bin_1.1.3-5 libpam-runtime_1.1.3-5 libpam0g_1.1.3-5 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libpod-plainer-perl_1.03-1 libquadmath0_4.6.2-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-4 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-4 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-3 libtinfo5_5.9-3 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-16 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-3 ncurses-bin_5.9-3 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-biobase-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011n-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Kernel: Linux 3.2.0-3-amd64 amd64 (x86_64)
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.7_4.7.2-5 gcc-4.7_4.7.2-5 libc6-dev_2.13-38 libstdc++6_4.7.2-5 libstdc++6-4.7-dev_4.7.2-5 linux-libc-dev_3.2.41-2
+Package versions: apt_0.9.7.8 base-files_7.1 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.22-8 bsdmainutils_9.0.4 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.20-3 cpp_4:4.7.2-1 cpp-4.7_4.7.2-5 dash_0.5.7-3 debconf_1.5.49 debfoster_2.7-1.2 debhelper_9.20120909 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.11-3 findutils_4.4.2-5 fontconfig_2.9.0-7.1 fontconfig-config_2.9.0-7.1 g++_4:4.7.2-1 g++-4.7_4.7.2-5 gcc_4:4.7.2-1 gcc-4.7_4.7.2-5 gcc-4.7-base_4.7.2-5 gettext_0.18.1.1-10 gettext-base_0.18.1.1-10 gfortran_4:4.7.2-1 gfortran-4.7_4.7.2-5 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.14-1 groff-base_1.22.2-2 gzip_1.5-1.1 hostname_3.12 html2text_1.3.2a-15 initscripts_2.88dsf-41 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7.8 libasprintf-dev_0.18.1.1-10 libasprintf0c2_0.18.1.1-10 libattr1_1:2.4.46-8 libblas-dev_1.2.20110419-5 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.3 libbz2-1.0_1.0.6-4 libbz2-dev_1.0.6-4 libc-bin_2.13-38 libc-dev-bin_2.13-38 libc6_2.13-38 libc6-dev_2.13-38 libcairo2_1.12.2-3 libclass-isa-perl_0.36-5 libcomerr2_1.42.5-1.1 libcroco3_0.6.6-2 libdatrie1_0.2.5-3 libdb5.1_5.1.29-5 libdpkg-perl_1.16.10 libexpat1_2.1.0-1 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-2 libfontconfig1_2.9.0-7.1 libfreetype6_2.4.9-1.1 libgc1c2_1:7.1-9.1 libgcc1_1:4.7.2-5 libgdbm3_1.8.3-11 libgettextpo-dev_0.18.1.1-10 libgettextpo0_0.18.1.1-10 libgfortran3_4.7.2-5 libglib2.0-0_2.33.12+really2.32.4-5 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.2-5 libgpm2_1.20.4-6 libice6_2:1.0.8-2 libitm1_4.7.2-5 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.4.1+dfsg-1 liblapack3_3.4.1+dfsg-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.11-3 libmount1_2.20.1-5.3 libmpc2_0.9-4 libmpfr4_3.1.1-1 libncurses5_5.9-10 libncurses5-dev_5.9-10 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.31-2 libpcre3-dev_1:8.31-2 libpcrecpp0_1:8.31-2 libpipeline1_1.2.2-2 libpixman-1-0_0.26.0-4 libpng12-0_1.2.49-3 libpng12-dev_1.2.49-3 libpod-plainer-perl_1.03-1 libquadmath0_4.7.2-5 libreadline-dev_6.2+dfsg-0.1 libreadline6_6.2+dfsg-0.1 libreadline6-dev_6.2+dfsg-0.1 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libss2_1.42.5-1.1 libstdc++6_4.7.2-5 libstdc++6-4.7-dev_4.7.2-5 libswitch-perl_2.16-2 libthai-data_0.1.18-2 libthai0_0.1.18-2 libtiff5_4.0.2-6 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-10 libtinfo5_5.9-10 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23+nmu1 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.3 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-2 libxcb-shm0_1.8.1-2 libxcb1_1.8.1-2 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-7+nmu1 libxrender1_1:0.9.7-1 libxss1_1:1.2.2-1 libxt6_1:1.1.3-1 linux-libc-dev_3.2.41-2 login_1:4.1.5.1-1 lsb-base_4.1+Debian9 make_3.81-8.2 man-db_2.6.3-3 mawk_1.3.3-17 mount_2.20.1-5.3 multiarch-support_2.13-38 ncurses-base_5.9-10 ncurses-bin_5.9-10 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-20 perl-base_5.14.2-20 perl-modules_5.14.2-20 po-debconf_1.0.16+nmu2 r-base-core_3.0.0-2 r-base-dev_3.0.0-2 r-bioc-biocgenerics_0.6.0-1 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-biobase-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 sysv-rc_2.88dsf-41 sysvinit_2.88dsf-41 sysvinit-utils_2.88dsf-41 tar_1.26+dfsg-5 tcl8.5_8.5.11-2 tk8.5_8.5.11-2 ttf-dejavu-core_2.33-3 tzdata_2013b-2 ucf_3.0025+nmu3 unzip_6.0-9 util-linux_2.20.1-5.3 x11-common_1:7.7+2 xdg-utils_1.1.0~rc1+git20111210-7 xz-utils_5.1.1alpha+20120614-2 zip_3.0-7 zlib1g_1:1.2.7.dfsg-13 zlib1g-dev_1:1.2.7.dfsg-13
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -372,10 +474,10 @@ Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binu
Unpack source
─────────────
-dpkg-source: warning: extracting unsigned source package (r-bioc-biobase_2.14.0-1.dsc)
-dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.14.0
-dpkg-source: info: unpacking r-bioc-biobase_2.14.0.orig.tar.gz
-dpkg-source: info: applying r-bioc-biobase_2.14.0-1.diff.gz
+dpkg-source: warning: extracting unsigned source package (r-bioc-biobase_2.20.0-1.dsc)
+dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.20.0
+dpkg-source: info: unpacking r-bioc-biobase_2.20.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-biobase_2.20.0-1.diff.gz
Check disc space
────────────────
@@ -388,11 +490,12 @@ User Environment
HOME=/sbuild-nonexistent
LOGNAME=charles
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+SCHROOT_ALIAS_NAME=chroot:sid-amd64-sbuild
SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=charles
-SCHROOT_SESSION_ID=sid-amd64-sbuild-7fbe1793-6843-40a0-baa6-6a3229218014
+SCHROOT_SESSION_ID=sid-amd64-sbuild-a067d783-d4f0-4254-8d6a-876109cf8330
SCHROOT_UID=31051
SCHROOT_USER=charles
SHELL=/bin/sh
@@ -404,9 +507,9 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-biobase
-dpkg-buildpackage: source version 2.14.0-1
+dpkg-buildpackage: source version 2.20.0-1
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
- dpkg-source --before-build r-bioc-biobase-2.14.0
+ dpkg-source --before-build r-bioc-biobase-2.20.0
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -432,12 +535,12 @@ if test -d src; then \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
- dpkg-source -b r-bioc-biobase-2.14.0
+ dpkg-source -b r-bioc-biobase-2.20.0
dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1)
dpkg-source: info: using source format `1.0'
-dpkg-source: info: building r-bioc-biobase using existing r-bioc-biobase_2.14.0.orig.tar.gz
-dpkg-source: info: building r-bioc-biobase in r-bioc-biobase_2.14.0-1.diff.gz
-dpkg-source: info: building r-bioc-biobase in r-bioc-biobase_2.14.0-1.dsc
+dpkg-source: info: building r-bioc-biobase using existing r-bioc-biobase_2.20.0.orig.tar.gz
+dpkg-source: info: building r-bioc-biobase in r-bioc-biobase_2.20.0-1.diff.gz
+dpkg-source: info: building r-bioc-biobase in r-bioc-biobase_2.20.0-1.dsc
debian/rules build
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -467,6 +570,7 @@ dh_installdirs -A
mkdir -p "."
/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
dh_installdirs usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 3.0.0-2)" >> debian/r-bioc-biobase.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
@@ -478,12 +582,12 @@ if test -f /usr/bin/xvfb-run; then \
* installing *source* package 'Biobase' ...
** libs
make[1]: Entering directory `/«PKGBUILDDIR»/src'
-gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c Rinit.c -o Rinit.o
-gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c anyMissing.c -o anyMissing.o
-gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c envir.c -o envir.o
-gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c matchpt.c -o matchpt.o
-gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c rowMedians.c -o rowMedians.o
-gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
+gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O2 -pipe -g -c Rinit.c -o Rinit.o
+gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O2 -pipe -g -c anyMissing.c -o anyMissing.o
+gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O2 -pipe -g -c envir.c -o envir.o
+gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O2 -pipe -g -c matchpt.c -o matchpt.o
+gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O2 -pipe -g -c rowMedians.c -o rowMedians.o
+gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O2 -pipe -g -c sublist_extract.c -o sublist_extract.o
gcc -std=gnu99 -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory `/«PKGBUILDDIR»/src'
make[1]: Entering directory `/«PKGBUILDDIR»/src'
@@ -495,16 +599,9 @@ installing to /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library/Biob
** preparing package for lazy loading
** help
*** installing help indices
-** building package indices ...
-*** tangling vignette sources ...
- 'BiobaseDevelopment.Rnw'
- 'Bioconductor.Rnw'
- 'ExpressionSetIntroduction.Rnw'
- 'HowTo.Rnw'
- 'Qviews.Rnw'
- 'esApply.Rnw'
+** building package indices
+** installing vignettes
** testing if installed package can be loaded
-
* DONE (Biobase)
rm -vf /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
/«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
@@ -516,7 +613,7 @@ if test -f debian/overrides; then \
fi
Adding cdbs dependencies to debian/r-bioc-biobase.substvars
dh_installdirs -pr-bioc-biobase
-echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-biobase.substvars
+echo "R:Depends=r-base-core (>= 3.0.0~)" >> debian/r-bioc-biobase.substvars
dh_installdocs -pr-bioc-biobase ./NEWS
dh_installexamples -pr-bioc-biobase
dh_installman -pr-bioc-biobase
@@ -548,13 +645,13 @@ dh_shlibdeps -pr-bioc-biobase
dh_gencontrol -pr-bioc-biobase
dh_md5sums -pr-bioc-biobase
dh_builddeb -pr-bioc-biobase -- -Z xz
-dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.14.0-1_amd64.deb'.
- dpkg-genchanges >../r-bioc-biobase_2.14.0-1_amd64.changes
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.20.0-1_amd64.deb'.
+ dpkg-genchanges >../r-bioc-biobase_2.20.0-1_amd64.changes
dpkg-genchanges: including full source code in upload
- dpkg-source --after-build r-bioc-biobase-2.14.0
+ dpkg-source --after-build r-bioc-biobase-2.20.0
dpkg-buildpackage: full upload (original source is included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20111102-1354
+Build finished at 20130411-1341
Finished
────────
@@ -566,15 +663,15 @@ I: Built successfully
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-biobase_2.14.0-1_amd64.changes:
+r-bioc-biobase_2.20.0-1_amd64.changes:
──────────────────────────────────────
Format: 1.8
-Date: Wed, 02 Nov 2011 13:52:04 +0900
+Date: Mon, 08 Apr 2013 13:00:55 +0900
Source: r-bioc-biobase
Binary: r-bioc-biobase
Architecture: source amd64
-Version: 2.14.0-1
+Version: 2.20.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -582,47 +679,56 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-biobase - base functions for Bioconductor
Changes:
- r-bioc-biobase (2.14.0-1) unstable; urgency=low
+ r-bioc-biobase (2.20.0-1) unstable; urgency=low
+ .
+ [ Andreas Tille ]
+ 910457e debian/upstream: Added citations
.
- [cb6b786] Bioconductor release 2.9.
- [d70e490] Build-Depend on R >= 2.10 according to DESCRIPTION.
- [ae99e35] Include 7 digits of the commit id in the changelog entry.
- [33b5d47] Compress binary package with xz.
+ [ Charles Plessy ]
+ 910457e Imported Upstream version 2.20.0
+ d1f8572 No new copyright nor license notice in the new upstream versions.
+ 4a880aa Using Debhelper 9
+ 6861f53 Conforms with Policy version 3.9.4.
+ 4a49c97 Normalised Debian copyright file with 'cme fix dpkg-copyright'.
+ 4ce8c62 Removed obsolete field DM-Upload-Allowed.
+ 64b2da7 Normalised debian/control with 'cme fix dpkg-control'.
+ c5c1206 Repaired Debian watch file.
+ d8c85b8 Normalised VCS URLs following Lintian's standard.
+ 4a6818a Depend on r-bioc-biocgenerics (>= 0.3.2).
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-biobase_2.14.0-1_amd64.deb
+r-bioc-biobase_2.20.0-1_amd64.deb
─────────────────────────────────
new debian package, version 2.0.
- size 2311488 bytes: control archive= 4959 bytes.
- 1217 bytes, 26 lines control
- 13314 bytes, 141 lines md5sums
+ size 2197896 bytes: control archive=4992 bytes.
+ 1218 bytes, 25 lines control
+ 13489 bytes, 142 lines md5sums
Package: r-bioc-biobase
- Version: 2.14.0-1
+ Version: 2.20.0-1
Architecture: amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 3068
- Pre-Depends: dpkg (>= 1.15.6)
- Depends: libc6 (>= 2.3), r-base-core (>= 2.14.0~)
+ Installed-Size: 2951
+ Depends: libc6 (>= 2.3), r-base-core (>= 3.0.0~), r-bioc-biocgenerics (>= 0.3.2)
Section: gnu-r
Priority: optional
Homepage: http://www.bioconductor.org
@@ -643,177 +749,178 @@ r-bioc-biobase_2.14.0-1_amd64.deb
unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
that are prepared by members of the Debian Med team.
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--rw-r--r-- root/root 835 2011-11-02 13:54 ./usr/lib/R/site-library/Biobase/help/paths.rds
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--rw-r--r-- root/root 501 2011-11-02 13:54 ./usr/lib/R/site-library/Biobase/data/geneCov.R
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--rw-r--r-- root/root 1179 2011-11-02 13:54 ./usr/lib/R/site-library/Biobase/html/R.css
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+-rw-r--r-- root/root 802 2013-04-11 13:41 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/NChannelSet.Rda
+-rw-r--r-- root/root 76485 2013-04-11 13:41 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/bbsym.rda
+-rw-r--r-- root/root 183 2013-04-11 13:41 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionedBiobase.Rda
+-rw-r--r-- root/root 25005 2013-04-11 13:41 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.eSet.rda
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+-rw-r--r-- root/root 318 2013-04-11 13:41 ./usr/lib/R/site-library/Biobase/UnitTests/Makefile
+-rw-r--r-- root/root 6194 2013-04-11 13:41 ./usr/lib/R/site-library/Biobase/UnitTests/ExpressionSet_test.R
+-rw-r--r-- root/root 403 2013-04-11 13:41 ./usr/lib/R/site-library/Biobase/UnitTests/copyEnv_test.R
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+-rw-r--r-- root/root 1907 2013-04-11 13:41 ./usr/lib/R/site-library/Biobase/UnitTests/subListExtract_test.R
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+-rwxr-xr-x root/root 213 2013-04-11 13:41 ./usr/lib/R/site-library/Biobase/UnitTests/runfile.sh
+-rw-r--r-- root/root 2358 2013-04-11 13:41 ./usr/lib/R/site-library/Biobase/UnitTests/AssayData_test.R
+-rw-r--r-- root/root 560 2013-04-11 13:41 ./usr/lib/R/site-library/Biobase/UnitTests/DataClasses_test.R
+-rw-r--r-- root/root 180 2013-04-11 13:41 ./usr/lib/R/site-library/Biobase/UnitTests/checkClass_test.R
+-rw-r--r-- root/root 2040 2013-04-11 13:41 ./usr/lib/R/site-library/Biobase/UnitTests/unsaveSetSlot_test.R
+-rw-r--r-- root/root 951 2013-04-11 13:41 ./usr/lib/R/site-library/Biobase/UnitTests/cache_test.R
+-rw-r--r-- root/root 580 2013-04-11 13:41 ./usr/lib/R/site-library/Biobase/UnitTests/SnpSet_test.R
+-rw-r--r-- root/root 20261 2013-04-11 13:41 ./usr/lib/R/site-library/Biobase/UnitTests/EsetSubclasses_test.R
+-rw-r--r-- root/root 503 2013-04-11 13:41 ./usr/lib/R/site-library/Biobase/UnitTests/combine_test.R
+drwxr-xr-x root/root 0 2013-04-11 13:41 ./usr/share/
+drwxr-xr-x root/root 0 2013-04-11 13:41 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-04-11 13:41 ./usr/share/doc/r-bioc-biobase/
+-rw-r--r-- root/root 1555 2013-04-04 07:22 ./usr/share/doc/r-bioc-biobase/NEWS.gz
+-rw-r--r-- root/root 10600 2013-04-11 13:41 ./usr/share/doc/r-bioc-biobase/copyright
+-rw-r--r-- root/root 710 2013-04-11 13:41 ./usr/share/doc/r-bioc-biobase/changelog.Debian.gz
+-rw-r--r-- root/root 392 2013-04-11 13:41 ./usr/share/doc/r-bioc-biobase/README.Debian
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -825,7 +932,7 @@ lintian
───────
I: r-bioc-biobase source: missing-debian-source-format
-P: r-bioc-biobase source: unversioned-copyright-format-uri http://dep.debian.net/deps/dep5/
+W: r-bioc-biobase: hardening-no-relro usr/lib/R/site-library/Biobase/libs/Biobase.so
P: r-bioc-biobase: no-upstream-changelog
I: Lintian run was successful.
@@ -835,171 +942,27 @@ I: Lintian run was successful.
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages will be REMOVED:
- cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config* gettext*
- gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
- intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
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- libglib2.0-0* libice6* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf*
- libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1*
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- libpng12-dev* libreadline-dev* libreadline6-dev* libsm6* libthai-data*
- libthai0* libtiff4* libtinfo-dev* libunistring0* libx11-6* libx11-data*
- libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2*
- libxml2* libxrender1* libxss1* libxt6* man-db* po-debconf* r-base-core*
- r-base-dev* sbuild-build-depends-r-bioc-biobase-dummy* tcl8.5* tk8.5*
- ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
-0 upgraded, 0 newly installed, 75 to remove and 0 not upgraded.
-After this operation, 128 MB disk space will be freed.
-(Reading database ... 14781 files and directories currently installed.)
-Removing sbuild-build-depends-r-bioc-biobase-dummy ...
-Removing r-base-dev ...
-Removing cdbs ...
-Removing debhelper ...
-Removing dpatch ...
-Purging configuration files for dpatch ...
-Removing file ...
-Removing r-base-core ...
-Purging configuration files for r-base-core ...
-Removing libpango1.0-0 ...
-Purging configuration files for libpango1.0-0 ...
-Removing fontconfig ...
-Purging configuration files for fontconfig ...
-Removing tk8.5 ...
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-Removing libxft2 ...
-Purging configuration files for libxft2 ...
-Removing libcairo2 ...
-Purging configuration files for libcairo2 ...
-Removing libfontconfig1 ...
-Purging configuration files for libfontconfig1 ...
-Removing fontconfig-config ...
-Purging configuration files for fontconfig-config ...
-Removing po-debconf ...
-Removing intltool-debian ...
-Removing gettext ...
-Removing gettext-base ...
-Removing gfortran ...
-Removing gfortran-4.6 ...
-Removing man-db ...
-Purging configuration files for man-db ...
-Removing groff-base ...
-Purging configuration files for groff-base ...
-Removing html2text ...
-Purging configuration files for html2text ...
-Removing liblapack-dev ...
-Removing libblas-dev ...
-Removing liblapack3gf ...
-Purging configuration files for liblapack3gf ...
-Removing libblas3gf ...
-Purging configuration files for libblas3gf ...
-Removing libbz2-dev ...
-Removing libcroco3 ...
-Purging configuration files for libcroco3 ...
-Removing libthai0 ...
-Purging configuration files for libthai0 ...
-Removing libdatrie1 ...
-Purging configuration files for libdatrie1 ...
-Removing libexpat1 ...
-Purging configuration files for libexpat1 ...
-Removing libfreetype6 ...
-Purging configuration files for libfreetype6 ...
-Removing libgfortran3 ...
-Purging configuration files for libgfortran3 ...
-Removing libglib2.0-0 ...
-Purging configuration files for libglib2.0-0 ...
-Removing libxt6 ...
-Purging configuration files for libxt6 ...
-Removing libsm6 ...
-Purging configuration files for libsm6 ...
-Removing libice6 ...
-Purging configuration files for libice6 ...
-Removing libtiff4 ...
-Purging configuration files for libtiff4 ...
-Removing libjpeg8-dev ...
-Removing libjpeg8 ...
-Removing libmagic1 ...
-Purging configuration files for libmagic1 ...
-Removing libncurses5-dev ...
-Removing libpaper-utils ...
-Removing libpaper1 ...
-Purging configuration files for libpaper1 ...
-Removing libpcre3-dev ...
-Removing libpcrecpp0 ...
-Purging configuration files for libpcrecpp0 ...
-Removing libpcre3 ...
-Purging configuration files for libpcre3 ...
-Removing libpipeline1 ...
-Purging configuration files for libpipeline1 ...
-Removing libpixman-1-0 ...
-Purging configuration files for libpixman-1-0 ...
-Removing libpng12-dev ...
-Removing libreadline-dev ...
-Removing libreadline6-dev ...
-Removing libthai-data ...
-Removing libtinfo-dev ...
-Removing libunistring0 ...
-Purging configuration files for libunistring0 ...
-Removing libxss1 ...
-Purging configuration files for libxss1 ...
-Removing libxrender1 ...
-Purging configuration files for libxrender1 ...
-Removing libxext6 ...
-Purging configuration files for libxext6 ...
-Removing libx11-6 ...
-Purging configuration files for libx11-6 ...
-Removing libx11-data ...
-Removing libxcb-shm0 ...
-Purging configuration files for libxcb-shm0 ...
-Removing libxcb-render0 ...
-Purging configuration files for libxcb-render0 ...
-Removing libxcb1 ...
-Purging configuration files for libxcb1 ...
-Removing libxau6 ...
-Purging configuration files for libxau6 ...
-Removing libxdmcp6 ...
-Purging configuration files for libxdmcp6 ...
-Removing libxml2 ...
-Purging configuration files for libxml2 ...
-Removing tcl8.5 ...
-Purging configuration files for tcl8.5 ...
-Removing ttf-dejavu-core ...
-Removing ucf ...
-Purging configuration files for ucf ...
-Removing unzip ...
-Purging configuration files for unzip ...
-Removing x11-common ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of stop.
-Purging configuration files for x11-common ...
-Removing xdg-utils ...
-Removing zip ...
-Removing zlib1g-dev ...
+Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
-Architecture: amd64
-Build-Space: 10888
-Build-Time: 11
+Build Architecture: amd64
+Build-Space: 10548
+Build-Time: 30
Distribution: unstable
-Install-Time: 89
-Job: r-bioc-biobase_2.14.0-1.dsc
+Host Architecture: amd64
+Install-Time: 49
+Job: r-bioc-biobase_2.20.0-1.dsc
Lintian: pass
+Machine Architecture: amd64
Package: r-bioc-biobase
-Package-Time: 104
-Source-Version: 2.14.0-1
-Space: 10888
+Package-Time: 102
+Source-Version: 2.20.0-1
+Space: 10548
Status: successful
-Version: 2.14.0-1
+Version: 2.20.0-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20111102-1354
-Build needed 00:01:44, 10888k disc space
+Finished at 20130411-1341
+Build needed 00:01:42, 10548k disc space
diff --git a/dsc b/dsc
index 5f66f3e..0245fa0 100644
--- a/dsc
+++ b/dsc
@@ -5,41 +5,40 @@ Format: 1.0
Source: r-bioc-biobase
Binary: r-bioc-biobase
Architecture: any
-Version: 2.14.0-1
+Version: 2.20.0-1
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy at debian.org>
-Dm-Upload-Allowed: yes
Homepage: http://www.bioconductor.org
-Standards-Version: 3.9.2
-Vcs-Browser: http://git.debian.org/?p=debian-med/r-bioc-biobase.git
-Vcs-Git: git://git.debian.org/git/debian-med/r-bioc-biobase.git
-Build-Depends: cdbs, debhelper (>= 8), r-base-dev (>= 2.10)
+Standards-Version: 3.9.4
+Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/r-bioc-biobase.git
+Vcs-Git: git://anonscm.debian.org/debian-med/r-bioc-biobase.git
+Build-Depends: cdbs, debhelper (>= 9), r-base-dev, r-bioc-biocgenerics (>= 0.3.2)
Package-List:
r-bioc-biobase deb gnu-r optional
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diff --git a/upload b/upload
new file mode 100644
index 0000000..ae0d9cb
--- /dev/null
+++ b/upload
@@ -0,0 +1,6 @@
+u r-bioc-biobase_2.20.0.orig.tar.gz ftp.upload.debian.org Thu Apr 11 13:43:56 2013
+u r-bioc-biobase_2.20.0-1.dsc ftp.upload.debian.org Thu Apr 11 13:43:57 2013
+u r-bioc-biobase_2.20.0-1.diff.gz ftp.upload.debian.org Thu Apr 11 13:43:58 2013
+u r-bioc-biobase_2.20.0-1_amd64.deb ftp.upload.debian.org Thu Apr 11 13:44:02 2013
+u r-bioc-biobase_2.20.0-1_amd64.changes ftp.upload.debian.org Thu Apr 11 13:44:03 2013
+s r-bioc-biobase_2.20.0-1_amd64.changes ftp.upload.debian.org Thu Apr 11 13:44:03 2013
--
base functions for Bioconductor
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