[med-svn] [SCM] picard-tools branch, master, updated. debian/1.82-1-11-gcc14cea

[Olivier Sallou]

The following commit has been merged in the master branch:
commit a6079cb653c88c8ab0ad65a131933c2303127181
Author: Olivier Sallou <olivier.sallou at debian.org>
Date:   Fri Apr 19 14:28:50 2013 +0200

    Fix 705686, change classpath of tool BuildBamIndex

diff --git a/debian/bin/picard-tools b/debian/bin/picard-tools
index c4515b9..2bd95d5 100755
--- a/debian/bin/picard-tools
+++ b/debian/bin/picard-tools
@@ -18,7 +18,7 @@ case $command in
 	AddOrReplaceReadGroups)         main=net.sf.picard.sam.AddOrReplaceReadGroups;;
 	BamIndexStats)                  main=net.sf.picard.sam.BamIndexStats;;
 	BamToBfq)                       main=net.sf.picard.fastq.BamToBfq;;
-	BuildBamIndex)                  main=net.sf.picard.util.BuildBamIndex;;
+	BuildBamIndex)                  main=net.sf.picard.sam.BuildBamIndex;;
 	CalculateHsMetrics)             main=net.sf.picard.analysis.directed.CalculateHsMetrics;;
 	CleanSam)                       main=net.sf.picard.sam.CleanSam;;
 	CollectAlignmentSummaryMetrics) main=net.sf.picard.analysis.CollectAlignmentSummaryMetrics;;
diff --git a/debian/changelog b/debian/changelog
index 402a63a..5202145 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+picard-tools (1.82-2) unstable; urgency=low
+
+  * Fix classpath for BuildBamIndex (Closes: #705686).
+
+ -- Olivier Sallou <osallou at debian.org>  Fri, 19 Apr 2013 14:26:23 +0200
+
 picard-tools (1.82-1) unstable; urgency=low
 
   * New upstream release

-- 
manipulate SAM and BAM files