[med-svn] r13394 - in trunk/packages/bowtie/trunk/debian: . patches

[Ognyan Kulev]

Author: ogi
Date: 2013-04-24 12:30:53 +0000 (Wed, 24 Apr 2013)
New Revision: 13394

Added:
   trunk/packages/bowtie/trunk/debian/patches/no_hash_style_both_for_mips.patch
Modified:
   trunk/packages/bowtie/trunk/debian/changelog
   trunk/packages/bowtie/trunk/debian/patches/series
Log:
Fix build failures on mips and mipsel.


Modified: trunk/packages/bowtie/trunk/debian/changelog
===================================================================
--- trunk/packages/bowtie/trunk/debian/changelog	2013-04-24 12:25:51 UTC (rev 13393)
+++ trunk/packages/bowtie/trunk/debian/changelog	2013-04-24 12:30:53 UTC (rev 13394)
@@ -1,3 +1,10 @@
+bowtie (1.0.0-3) unstable; urgency=low
+
+  * New patch no_hash_style_both_for_mips.patch.
+    This fixes build errors on mips and mipsel.
+
+ -- Ognyan Kulev <ogi at debian.org>  Wed, 24 Apr 2013 15:15:37 +0300
+
 bowtie (1.0.0-2) unstable; urgency=low
 
   * Requires version 1.3 of SeqAn.

Added: trunk/packages/bowtie/trunk/debian/patches/no_hash_style_both_for_mips.patch
===================================================================
--- trunk/packages/bowtie/trunk/debian/patches/no_hash_style_both_for_mips.patch	                        (rev 0)
+++ trunk/packages/bowtie/trunk/debian/patches/no_hash_style_both_for_mips.patch	2013-04-24 12:30:53 UTC (rev 13394)
@@ -0,0 +1,20 @@
+Description: Disable -Wl,--hash-style=both on mips machines.
+ It's not supported on mips and mipsel ports and leads to build errors.
+Author: Ognyan Kulev <ogi at debian.org>
+Forwarded: not-needed
+Last-Update: 2013-04-24
+---
+This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+--- bowtie-1.0.0.orig/Makefile
++++ bowtie-1.0.0/Makefile
+@@ -45,7 +45,9 @@
+ LINUX = 0
+ ifneq (,$(findstring Linux,$(shell uname)))
+     LINUX = 1
+-    EXTRA_FLAGS += -Wl,--hash-style=both
++    ifeq (,$(findstring mips,$(shell uname -m)))
++        EXTRA_FLAGS += -Wl,--hash-style=both
++    endif
+ endif
+ 
+ MM_DEF = 

Modified: trunk/packages/bowtie/trunk/debian/patches/series
===================================================================
--- trunk/packages/bowtie/trunk/debian/patches/series	2013-04-24 12:25:51 UTC (rev 13393)
+++ trunk/packages/bowtie/trunk/debian/patches/series	2013-04-24 12:30:53 UTC (rev 13394)
@@ -4,3 +4,4 @@
 seqan-rename-ChunkPool.patch
 seqan-rename-fill-to-resize.patch
 disable_bits_flag.patch
+no_hash_style_both_for_mips.patch