[med-svn] [SCM] python-htseq branch, master, updated. ac33bf63bacceec62ab224af1c129496508d07f1
Diane Trout
diane at ghic.org
Fri Aug 2 04:59:54 UTC 2013
The following commit has been merged in the master branch:
commit df79363a06cc0a5449548b3b6c17ff42970b465a
Author: Diane Trout <diane at ghic.org>
Date: Thu Aug 1 20:50:39 2013 -0700
Remove files that are regenerated by build process
diff --git a/HTSeq.egg-info/PKG-INFO b/HTSeq.egg-info/PKG-INFO
deleted file mode 100644
index 56b48cd..0000000
--- a/HTSeq.egg-info/PKG-INFO
+++ /dev/null
@@ -1,19 +0,0 @@
-Metadata-Version: 1.1
-Name: HTSeq
-Version: 0.5.4p3
-Summary: A framework to process and analyze data from high-throughput sequencing (HTS) assays
-Home-page: http://www-huber.embl.de/users/anders/HTSeq/
-Author: Simon Anders
-Author-email: sanders at fs.tum.de
-License: UNKNOWN
-Description: UNKNOWN
-Platform: UNKNOWN
-Classifier: Development Status :: 4 - Beta
-Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
-Classifier: Intended Audience :: Developers
-Classifier: Intended Audience :: Science/Research
-Classifier: License :: OSI Approved :: GNU General Public License (GPL)
-Classifier: Operating System :: POSIX
-Classifier: Programming Language :: Python
-Requires: numpy
-Requires: python (>=2.5, <3.0)
diff --git a/HTSeq.egg-info/SOURCES.txt b/HTSeq.egg-info/SOURCES.txt
deleted file mode 100644
index d424f3b..0000000
--- a/HTSeq.egg-info/SOURCES.txt
+++ /dev/null
@@ -1,58 +0,0 @@
-LICENSE
-MANIFEST.in
-README
-VERSION
-build_it
-clean
-setup.py
-HTSeq/StepVector.py
-HTSeq/_HTSeq_internal.py
-HTSeq/__init__.py
-HTSeq/_version.py
-HTSeq.egg-info/PKG-INFO
-HTSeq.egg-info/SOURCES.txt
-HTSeq.egg-info/dependency_links.txt
-HTSeq.egg-info/top_level.txt
-HTSeq/scripts/__init__.py
-HTSeq/scripts/count.py
-HTSeq/scripts/qa.py
-doc/Makefile
-doc/add_counter.py
-doc/alignments.rst
-doc/conf.py
-doc/contrib.rst
-doc/count.rst
-doc/count_modes.odg
-doc/count_modes.png
-doc/features.rst
-doc/genomic.rst
-doc/history.rst
-doc/index.rst
-doc/install.rst
-doc/make_it
-doc/misc.rst
-doc/overview.rst
-doc/qa.rst
-doc/qa_example.png
-doc/qualplot.png
-doc/sequences.rst
-doc/tour.rst
-doc/tss.rst
-doc/tss1.py
-doc/tss2.py
-doc/tss3.py
-doc/tss_fig1.png
-doc/tss_fig2.png
-doc/tss_fig3.png
-doc/tss_fig4.png
-scripts/htseq-count
-scripts/htseq-qa
-src/AutoPyObjPtr.i
-src/Makefile
-src/StepVector.i
-src/StepVector_wrap.cxx
-src/_HTSeq.c
-src/step_vector.h
-src/HTSeq/_HTSeq.pxd
-src/HTSeq/_HTSeq.pyx
-src/HTSeq/__init__.py
\ No newline at end of file
diff --git a/HTSeq.egg-info/dependency_links.txt b/HTSeq.egg-info/dependency_links.txt
deleted file mode 100644
index 8b13789..0000000
--- a/HTSeq.egg-info/dependency_links.txt
+++ /dev/null
@@ -1 +0,0 @@
-
diff --git a/HTSeq.egg-info/top_level.txt b/HTSeq.egg-info/top_level.txt
deleted file mode 100644
index 155632f..0000000
--- a/HTSeq.egg-info/top_level.txt
+++ /dev/null
@@ -1 +0,0 @@
-HTSeq
diff --git a/HTSeq/StepVector.py b/HTSeq/StepVector.py
deleted file mode 100644
index c6158ae..0000000
--- a/HTSeq/StepVector.py
+++ /dev/null
@@ -1,567 +0,0 @@
-# This file was automatically generated by SWIG (http://www.swig.org).
-# Version 2.0.4
-#
-# Do not make changes to this file unless you know what you are doing--modify
-# the SWIG interface file instead.
-
-
-
-from sys import version_info
-if version_info >= (2,6,0):
- def swig_import_helper():
- from os.path import dirname
- import imp
- fp = None
- try:
- fp, pathname, description = imp.find_module('_StepVector', [dirname(__file__)])
- except ImportError:
- import _StepVector
- return _StepVector
- if fp is not None:
- try:
- _mod = imp.load_module('_StepVector', fp, pathname, description)
- finally:
- fp.close()
- return _mod
- _StepVector = swig_import_helper()
- del swig_import_helper
-else:
- import _StepVector
-del version_info
-try:
- _swig_property = property
-except NameError:
- pass # Python < 2.2 doesn't have 'property'.
-def _swig_setattr_nondynamic(self,class_type,name,value,static=1):
- if (name == "thisown"): return self.this.own(value)
- if (name == "this"):
- if type(value).__name__ == 'SwigPyObject':
- self.__dict__[name] = value
- return
- method = class_type.__swig_setmethods__.get(name,None)
- if method: return method(self,value)
- if (not static):
- self.__dict__[name] = value
- else:
- raise AttributeError("You cannot add attributes to %s" % self)
-
-def _swig_setattr(self,class_type,name,value):
- return _swig_setattr_nondynamic(self,class_type,name,value,0)
-
-def _swig_getattr(self,class_type,name):
- if (name == "thisown"): return self.this.own()
- method = class_type.__swig_getmethods__.get(name,None)
- if method: return method(self)
- raise AttributeError(name)
-
-def _swig_repr(self):
- try: strthis = "proxy of " + self.this.__repr__()
- except: strthis = ""
- return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
-
-try:
- _object = object
- _newclass = 1
-except AttributeError:
- class _object : pass
- _newclass = 0
-
-
-class _Pair_int_float(_object):
- __swig_setmethods__ = {}
- __setattr__ = lambda self, name, value: _swig_setattr(self, _Pair_int_float, name, value)
- __swig_getmethods__ = {}
- __getattr__ = lambda self, name: _swig_getattr(self, _Pair_int_float, name)
- __repr__ = _swig_repr
- __swig_setmethods__["first"] = _StepVector._Pair_int_float_first_set
- __swig_getmethods__["first"] = _StepVector._Pair_int_float_first_get
- if _newclass:first = _swig_property(_StepVector._Pair_int_float_first_get, _StepVector._Pair_int_float_first_set)
- __swig_setmethods__["second"] = _StepVector._Pair_int_float_second_set
- __swig_getmethods__["second"] = _StepVector._Pair_int_float_second_get
- if _newclass:second = _swig_property(_StepVector._Pair_int_float_second_get, _StepVector._Pair_int_float_second_set)
- def __init__(self, *args):
- this = _StepVector.new__Pair_int_float(*args)
- try: self.this.append(this)
- except: self.this = this
- __swig_destroy__ = _StepVector.delete__Pair_int_float
- __del__ = lambda self : None;
-_Pair_int_float_swigregister = _StepVector._Pair_int_float_swigregister
-_Pair_int_float_swigregister(_Pair_int_float)
-
-class _StepVector_Iterator_float(_object):
- __swig_setmethods__ = {}
- __setattr__ = lambda self, name, value: _swig_setattr(self, _StepVector_Iterator_float, name, value)
- __swig_getmethods__ = {}
- __getattr__ = lambda self, name: _swig_getattr(self, _StepVector_Iterator_float, name)
- __repr__ = _swig_repr
- def __init__(self, *args):
- this = _StepVector.new__StepVector_Iterator_float(*args)
- try: self.this.append(this)
- except: self.this = this
- def next(self): return _StepVector._StepVector_Iterator_float_next(self)
- def __iter__(self): return _StepVector._StepVector_Iterator_float___iter__(self)
- __swig_destroy__ = _StepVector.delete__StepVector_Iterator_float
- __del__ = lambda self : None;
-_StepVector_Iterator_float_swigregister = _StepVector._StepVector_Iterator_float_swigregister
-_StepVector_Iterator_float_swigregister(_StepVector_Iterator_float)
-
-class _StepVector_float(_object):
- __swig_setmethods__ = {}
- __setattr__ = lambda self, name, value: _swig_setattr(self, _StepVector_float, name, value)
- __swig_getmethods__ = {}
- __getattr__ = lambda self, name: _swig_getattr(self, _StepVector_float, name)
- __repr__ = _swig_repr
- def __init__(self):
- this = _StepVector.new__StepVector_float()
- try: self.this.append(this)
- except: self.this = this
- def set_value(self, *args): return _StepVector._StepVector_float_set_value(self, *args)
- def add_value(self, *args): return _StepVector._StepVector_float_add_value(self, *args)
- def get_all_values_pystyle(self): return _StepVector._StepVector_float_get_all_values_pystyle(self)
- def get_values_pystyle(self, *args): return _StepVector._StepVector_float_get_values_pystyle(self, *args)
- def num_values(self): return _StepVector._StepVector_float_num_values(self)
- __swig_destroy__ = _StepVector.delete__StepVector_float
- __del__ = lambda self : None;
-_StepVector_float_swigregister = _StepVector._StepVector_float_swigregister
-_StepVector_float_swigregister(_StepVector_float)
-cvar = _StepVector.cvar
-_StepVector_float.min_index = _StepVector.cvar._StepVector_float_min_index
-_StepVector_float.max_index = _StepVector.cvar._StepVector_float_max_index
-
-class _Pair_int_int(_object):
- __swig_setmethods__ = {}
- __setattr__ = lambda self, name, value: _swig_setattr(self, _Pair_int_int, name, value)
- __swig_getmethods__ = {}
- __getattr__ = lambda self, name: _swig_getattr(self, _Pair_int_int, name)
- __repr__ = _swig_repr
- __swig_setmethods__["first"] = _StepVector._Pair_int_int_first_set
- __swig_getmethods__["first"] = _StepVector._Pair_int_int_first_get
- if _newclass:first = _swig_property(_StepVector._Pair_int_int_first_get, _StepVector._Pair_int_int_first_set)
- __swig_setmethods__["second"] = _StepVector._Pair_int_int_second_set
- __swig_getmethods__["second"] = _StepVector._Pair_int_int_second_get
- if _newclass:second = _swig_property(_StepVector._Pair_int_int_second_get, _StepVector._Pair_int_int_second_set)
- def __init__(self, *args):
- this = _StepVector.new__Pair_int_int(*args)
- try: self.this.append(this)
- except: self.this = this
- __swig_destroy__ = _StepVector.delete__Pair_int_int
- __del__ = lambda self : None;
-_Pair_int_int_swigregister = _StepVector._Pair_int_int_swigregister
-_Pair_int_int_swigregister(_Pair_int_int)
-
-class _StepVector_Iterator_int(_object):
- __swig_setmethods__ = {}
- __setattr__ = lambda self, name, value: _swig_setattr(self, _StepVector_Iterator_int, name, value)
- __swig_getmethods__ = {}
- __getattr__ = lambda self, name: _swig_getattr(self, _StepVector_Iterator_int, name)
- __repr__ = _swig_repr
- def __init__(self, *args):
- this = _StepVector.new__StepVector_Iterator_int(*args)
- try: self.this.append(this)
- except: self.this = this
- def next(self): return _StepVector._StepVector_Iterator_int_next(self)
- def __iter__(self): return _StepVector._StepVector_Iterator_int___iter__(self)
- __swig_destroy__ = _StepVector.delete__StepVector_Iterator_int
- __del__ = lambda self : None;
-_StepVector_Iterator_int_swigregister = _StepVector._StepVector_Iterator_int_swigregister
-_StepVector_Iterator_int_swigregister(_StepVector_Iterator_int)
-
-class _StepVector_int(_object):
- __swig_setmethods__ = {}
- __setattr__ = lambda self, name, value: _swig_setattr(self, _StepVector_int, name, value)
- __swig_getmethods__ = {}
- __getattr__ = lambda self, name: _swig_getattr(self, _StepVector_int, name)
- __repr__ = _swig_repr
- def __init__(self):
- this = _StepVector.new__StepVector_int()
- try: self.this.append(this)
- except: self.this = this
- def set_value(self, *args): return _StepVector._StepVector_int_set_value(self, *args)
- def add_value(self, *args): return _StepVector._StepVector_int_add_value(self, *args)
- def get_all_values_pystyle(self): return _StepVector._StepVector_int_get_all_values_pystyle(self)
- def get_values_pystyle(self, *args): return _StepVector._StepVector_int_get_values_pystyle(self, *args)
- def num_values(self): return _StepVector._StepVector_int_num_values(self)
- __swig_destroy__ = _StepVector.delete__StepVector_int
- __del__ = lambda self : None;
-_StepVector_int_swigregister = _StepVector._StepVector_int_swigregister
-_StepVector_int_swigregister(_StepVector_int)
-_StepVector_int.min_index = _StepVector.cvar._StepVector_int_min_index
-_StepVector_int.max_index = _StepVector.cvar._StepVector_int_max_index
-
-class _Pair_int_bool(_object):
- __swig_setmethods__ = {}
- __setattr__ = lambda self, name, value: _swig_setattr(self, _Pair_int_bool, name, value)
- __swig_getmethods__ = {}
- __getattr__ = lambda self, name: _swig_getattr(self, _Pair_int_bool, name)
- __repr__ = _swig_repr
- __swig_setmethods__["first"] = _StepVector._Pair_int_bool_first_set
- __swig_getmethods__["first"] = _StepVector._Pair_int_bool_first_get
- if _newclass:first = _swig_property(_StepVector._Pair_int_bool_first_get, _StepVector._Pair_int_bool_first_set)
- __swig_setmethods__["second"] = _StepVector._Pair_int_bool_second_set
- __swig_getmethods__["second"] = _StepVector._Pair_int_bool_second_get
- if _newclass:second = _swig_property(_StepVector._Pair_int_bool_second_get, _StepVector._Pair_int_bool_second_set)
- def __init__(self, *args):
- this = _StepVector.new__Pair_int_bool(*args)
- try: self.this.append(this)
- except: self.this = this
- __swig_destroy__ = _StepVector.delete__Pair_int_bool
- __del__ = lambda self : None;
-_Pair_int_bool_swigregister = _StepVector._Pair_int_bool_swigregister
-_Pair_int_bool_swigregister(_Pair_int_bool)
-
-class _StepVector_Iterator_bool(_object):
- __swig_setmethods__ = {}
- __setattr__ = lambda self, name, value: _swig_setattr(self, _StepVector_Iterator_bool, name, value)
- __swig_getmethods__ = {}
- __getattr__ = lambda self, name: _swig_getattr(self, _StepVector_Iterator_bool, name)
- __repr__ = _swig_repr
- def __init__(self, *args):
- this = _StepVector.new__StepVector_Iterator_bool(*args)
- try: self.this.append(this)
- except: self.this = this
- def next(self): return _StepVector._StepVector_Iterator_bool_next(self)
- def __iter__(self): return _StepVector._StepVector_Iterator_bool___iter__(self)
- __swig_destroy__ = _StepVector.delete__StepVector_Iterator_bool
- __del__ = lambda self : None;
-_StepVector_Iterator_bool_swigregister = _StepVector._StepVector_Iterator_bool_swigregister
-_StepVector_Iterator_bool_swigregister(_StepVector_Iterator_bool)
-
-class _StepVector_bool(_object):
- __swig_setmethods__ = {}
- __setattr__ = lambda self, name, value: _swig_setattr(self, _StepVector_bool, name, value)
- __swig_getmethods__ = {}
- __getattr__ = lambda self, name: _swig_getattr(self, _StepVector_bool, name)
- __repr__ = _swig_repr
- def __init__(self):
- this = _StepVector.new__StepVector_bool()
- try: self.this.append(this)
- except: self.this = this
- def set_value(self, *args): return _StepVector._StepVector_bool_set_value(self, *args)
- def add_value(self, *args): return _StepVector._StepVector_bool_add_value(self, *args)
- def get_all_values_pystyle(self): return _StepVector._StepVector_bool_get_all_values_pystyle(self)
- def get_values_pystyle(self, *args): return _StepVector._StepVector_bool_get_values_pystyle(self, *args)
- def num_values(self): return _StepVector._StepVector_bool_num_values(self)
- __swig_destroy__ = _StepVector.delete__StepVector_bool
- __del__ = lambda self : None;
-_StepVector_bool_swigregister = _StepVector._StepVector_bool_swigregister
-_StepVector_bool_swigregister(_StepVector_bool)
-_StepVector_bool.min_index = _StepVector.cvar._StepVector_bool_min_index
-_StepVector_bool.max_index = _StepVector.cvar._StepVector_bool_max_index
-
-class _Pair_int_obj(_object):
- __swig_setmethods__ = {}
- __setattr__ = lambda self, name, value: _swig_setattr(self, _Pair_int_obj, name, value)
- __swig_getmethods__ = {}
- __getattr__ = lambda self, name: _swig_getattr(self, _Pair_int_obj, name)
- __repr__ = _swig_repr
- __swig_setmethods__["first"] = _StepVector._Pair_int_obj_first_set
- __swig_getmethods__["first"] = _StepVector._Pair_int_obj_first_get
- if _newclass:first = _swig_property(_StepVector._Pair_int_obj_first_get, _StepVector._Pair_int_obj_first_set)
- __swig_setmethods__["second"] = _StepVector._Pair_int_obj_second_set
- __swig_getmethods__["second"] = _StepVector._Pair_int_obj_second_get
- if _newclass:second = _swig_property(_StepVector._Pair_int_obj_second_get, _StepVector._Pair_int_obj_second_set)
- def __init__(self, *args):
- this = _StepVector.new__Pair_int_obj(*args)
- try: self.this.append(this)
- except: self.this = this
- __swig_destroy__ = _StepVector.delete__Pair_int_obj
- __del__ = lambda self : None;
-_Pair_int_obj_swigregister = _StepVector._Pair_int_obj_swigregister
-_Pair_int_obj_swigregister(_Pair_int_obj)
-
-class _StepVector_Iterator_obj(_object):
- __swig_setmethods__ = {}
- __setattr__ = lambda self, name, value: _swig_setattr(self, _StepVector_Iterator_obj, name, value)
- __swig_getmethods__ = {}
- __getattr__ = lambda self, name: _swig_getattr(self, _StepVector_Iterator_obj, name)
- __repr__ = _swig_repr
- def __init__(self, *args):
- this = _StepVector.new__StepVector_Iterator_obj(*args)
- try: self.this.append(this)
- except: self.this = this
- def next(self): return _StepVector._StepVector_Iterator_obj_next(self)
- def __iter__(self): return _StepVector._StepVector_Iterator_obj___iter__(self)
- __swig_destroy__ = _StepVector.delete__StepVector_Iterator_obj
- __del__ = lambda self : None;
-_StepVector_Iterator_obj_swigregister = _StepVector._StepVector_Iterator_obj_swigregister
-_StepVector_Iterator_obj_swigregister(_StepVector_Iterator_obj)
-
-class _StepVector_obj(_object):
- __swig_setmethods__ = {}
- __setattr__ = lambda self, name, value: _swig_setattr(self, _StepVector_obj, name, value)
- __swig_getmethods__ = {}
- __getattr__ = lambda self, name: _swig_getattr(self, _StepVector_obj, name)
- __repr__ = _swig_repr
- def __init__(self):
- this = _StepVector.new__StepVector_obj()
- try: self.this.append(this)
- except: self.this = this
- def set_value(self, *args): return _StepVector._StepVector_obj_set_value(self, *args)
- def add_value(self, *args): return _StepVector._StepVector_obj_add_value(self, *args)
- def get_all_values_pystyle(self): return _StepVector._StepVector_obj_get_all_values_pystyle(self)
- def get_values_pystyle(self, *args): return _StepVector._StepVector_obj_get_values_pystyle(self, *args)
- def num_values(self): return _StepVector._StepVector_obj_num_values(self)
- __swig_destroy__ = _StepVector.delete__StepVector_obj
- __del__ = lambda self : None;
-_StepVector_obj_swigregister = _StepVector._StepVector_obj_swigregister
-_StepVector_obj_swigregister(_StepVector_obj)
-_StepVector_obj.min_index = _StepVector.cvar._StepVector_obj_min_index
-_StepVector_obj.max_index = _StepVector.cvar._StepVector_obj_max_index
-
-import sys
-
-class StepVector( object ):
-
- """A step vector is a vector with integer indices that is able to store
- data efficiently if it is piece-wise constant, i.e., if the values change
- in "steps". So, if a number of adjacent vectort elements have the same
- value, this values will be stored only once.
-
- The data can be either one of a number of elementary types, or any object.
-
- Usage example:
-
- >>> sv = StepVector.StepVector( 20 )
- >>> sv[5:17] = 13
- >>> sv[12]
- 13.0
- >>> list( sv )
- [0.0, 0.0, 0.0, 0.0, 0.0, 13.0, 13.0, 13.0, 13.0, 13.0, 13.0, 13.0, 13.0, 13.0, 13.0, 13.0, 13.0, 0.0, 0.0, 0.0]
- >>> list( sv.get_steps() )
- [(0, 5, 0.0), (5, 17, 13.0), (17, 20, 0.0)]
-
- """
-
- @classmethod
- def create( cls, length = sys.maxint, typecode = 'd', start_index = 0 ):
- """Construct a StepVector of the given length, with indices starting
- at the given start_index and counting up to (but not including)
- start_index + length.
-
- The typecode may be:
- 'd' for float values (C type 'double'),
- 'i' for int values,
- 'b' for Boolean values,
- 'O' for arbitrary Python objects as value.
-
- The vector is initialized with the value zero (or, for typecode 'O',
- with None).
- """
- if typecode == 'd':
- swigclass = _StepVector_float
- elif typecode == 'i':
- swigclass = _StepVector_int
- elif typecode == 'b':
- swigclass = _StepVector_bool
- elif typecode == 'O':
- swigclass = _StepVector_obj
- else:
- raise ValueError, "unsupported typecode"
- obj = cls()
- obj._typecode = typecode
- obj._swigobj = swigclass( )
- obj.start = start_index
- obj.stop = start_index + length
- return obj
-
- def __setitem__( self, index, value ):
- """To set element i of StepVector sv to the value v, write
- sv[i] = v
- If you want to set a whole step, say, all values from i to j (not
- including j), write
- sv[i:j] = v
- Note that the StepVector class will only notice that all the values
- from i to j are equal if you assign them in this fashion. Assigning each
- item individually in a loop from i to j will result in the value v being
- stored many times.
- """
- if isinstance( value, StepVector ):
- if self._swigobj is value._swigobj and \
- value.start == index.start and value.stop == index.stop:
- return
- else:
- raise NotImplemented, "Stepvector-to-Stepvector assignment still missing"
- if isinstance( index, slice ):
- if index.step is not None and index.step != 1:
- raise ValueError, "Striding slices (i.e., step != 1) are not supported"
- if index.start is None:
- start = self.start
- else:
- if index.start < self.start:
- raise IndexError, "start too small"
- start = index.start
- if index.stop is None:
- stop = self.stop
- else:
- if index.stop > self.stop:
- raise IndexError, "stop too large"
- stop = index.stop
- self._swigobj.set_value( start, stop-1, value )
- # Note the "-1": The C++ object uses closed intervals, but we follow
- # Python convention here and use half-open ones.
- else:
- self._swigobj.set_value( index, index, value )
-
- def get_steps( self, values_only = False, merge_steps=True ):
- """To get a succinct representation of the StepVector's content, call
- the 'get_steps' method. It returns an iterator that generates triples
- of values. Each triple contains one step, giving first the start index
- of the step, then the stop index (i.e., one more than the index of the
- last element), and as third element the value of the step.
-
- If you want to see only a part of the StepVector, use the 'start' and
- 'stop' parameters of 'get_steps' to specify a window.
-
- Sometimes, one might only be interested in the values, not the step
- boundaries. Then, set 'values_only' to true, and the iterator generates
- only the values insted of the triples.
- """
- startvals = self._swigobj.get_values_pystyle( self.start )
- prevstart = self.start
- prevval = startvals.next().second
- for pair in startvals:
- stepstart, value = pair.first, pair.second
- if merge_steps and value == prevval:
- continue
- if self.stop is not None and stepstart >= self.stop:
- if not values_only:
- yield prevstart, self.stop, prevval
- else:
- yield prevval
- return
- if not values_only:
- yield prevstart, stepstart, prevval
- else:
- yield prevval
- prevstart, prevval = stepstart, value
- else:
- if not values_only:
- yield prevstart, min( self.stop, self._swigobj.max_index+1), prevval
- else:
- yield prevval
-
- def __getitem__( self, index ):
- """Given a StepVector sv, writing sv[i] returns sv's element i (where i
- is an integer).
-
- If you use a slice, i.e., 'sv[i:j]', you get a view on the StepVector,
- i.e., the same data, but changed boundaries.
- """
- if isinstance( index, slice ):
- if index.step is not None and index.step != 1:
- raise ValueError, "Striding slices (i.e., step != 1) are not supported"
- if index.start is None:
- start = self.start
- else:
- if index.start < self.start:
- raise IndexError, "start too small"
- start = index.start
- if index.stop is None:
- stop = self.stop
- else:
- if index.stop > self.stop:
- raise IndexError, "stop too large"
- stop = index.stop
- res = self.__class__()
- res._typecode = self.typecode
- res._swigobj = self._swigobj
- res.start = start
- res.stop = stop
- return res
- else:
- return self._swigobj.get_values_pystyle( index ).next().second
-
- def __iter__( self ):
- """When asked to provide an iterator, a StepVector will yield all its
- value, repeating each value according to the length of the step.
- Hence, calling, e.g., 'list( sv )' will transform the StepVector 'sv'
- into an ordinary list.
- """
- for start, stop, value in self.get_steps():
- for i in xrange( start, stop ):
- yield value
-
- def __repr__( self ):
- if self.start == -sys.maxint - 1:
- start_s = "-inf"
- else:
- start_s = str( self.start )
- if self.stop == sys.maxint:
- stop_s = "inf"
- else:
- stop_s = str( self.stop )
- return "<%s object, type '%s', index range %s:%s, %d step(s)>" % (
- self.__class__.__name__, self.typecode(), start_s,
- stop_s, self.num_steps() )
-
- def typecode( self ):
- "Returns the typecode."
- return self._typecode
-
- def __len__( self ):
- """The length of a StepVector is defined by its index range, not by
- the number of steps.
- """
- return self.stop - self.start
-
- def num_steps( self ):
- """Returns the number of steps, i.e., the number of triples that get_steps
- returns.
- """
- return self._swigobj.num_values()
-
- def __eq__( self, other ):
- """StepVectors can be compared for equality. This is conceptually done
- element for element, but, for performance, taking steps in one go.
- """
- if self.start_index() != other.start_index() or len(self) != len(other) or \
- self.typecode() != other.typecode():
- print "Mark A"
- return False
- selfsteps = self.get_steps()
- othrsteps = other.get_steps()
- selfstart, selfstop, selfval = selfsteps.next()
- othrstart, othrstop, othrval = othrsteps.next()
- while selfstop < self.start_index() + len(self) and \
- othrstop < other.start_index() + len(other):
- assert selfstart < othrstop and othrstart < selfstop
- if not( selfval == othrval ):
- return False
- if selfstop < othrstop:
- selfstart, selfstop, selfval = selfsteps.next()
- elif othrstop < selfstop:
- othrstart, othrstop, othrval = othrsteps.next()
- else:
- selfstart, selfstop, selfval = selfsteps.next()
- othrstart, othrstop, othrval = othrsteps.next()
- return True
-
- def __neq__( self, other ):
- return not ( self == other )
-
- def __reduce__( self ):
- if self.__class__ is not StepVector:
- raise NotImplemented, "Attempting to pickle a subclass of StepVector without redefined __reduce__."
- return (
- _StepVector_unpickle,
- ( self.stop - self.start, self._typecode, self.start ),
- None,
- None,
- ( ( slice( start, stop ), val ) for start, stop, val in self.get_steps() ) )
-
- def __iadd__( self, value ):
- self._swigobj.add_value( self.start, self.stop-1, value )
- return self
-
- def apply( self, func, start = None, stop = None ):
- # TODO: check!
- for stepstart, stepstop, value in self.get_steps( start, stop ):
- self[ stepstart : stepstop ] = func( value )
-
-def _StepVector_unpickle( length, typecode, start ):
- return StepVector.create( length, typecode, start )
-
-
-# This file is compatible with both classic and new-style classes.
-
-
diff --git a/src/StepVector_wrap.cxx b/src/StepVector_wrap.cxx
deleted file mode 100644
index 5247312..0000000
--- a/src/StepVector_wrap.cxx
+++ /dev/null
@@ -1,6402 +0,0 @@
-/* ----------------------------------------------------------------------------
- * This file was automatically generated by SWIG (http://www.swig.org).
- * Version 2.0.4
- *
- * This file is not intended to be easily readable and contains a number of
- * coding conventions designed to improve portability and efficiency. Do not make
- * changes to this file unless you know what you are doing--modify the SWIG
- * interface file instead.
- * ----------------------------------------------------------------------------- */
-
-#define SWIGPYTHON
-#define SWIG_PYTHON_DIRECTOR_NO_VTABLE
-
-
-#ifdef __cplusplus
-/* SwigValueWrapper is described in swig.swg */
-template<typename T> class SwigValueWrapper {
- struct SwigMovePointer {
- T *ptr;
- SwigMovePointer(T *p) : ptr(p) { }
- ~SwigMovePointer() { delete ptr; }
- SwigMovePointer& operator=(SwigMovePointer& rhs) { T* oldptr = ptr; ptr = 0; delete oldptr; ptr = rhs.ptr; rhs.ptr = 0; return *this; }
- } pointer;
- SwigValueWrapper& operator=(const SwigValueWrapper<T>& rhs);
- SwigValueWrapper(const SwigValueWrapper<T>& rhs);
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- SwigValueWrapper() : pointer(0) { }
- SwigValueWrapper& operator=(const T& t) { SwigMovePointer tmp(new T(t)); pointer = tmp; return *this; }
- operator T&() const { return *pointer.ptr; }
- T *operator&() { return pointer.ptr; }
-};
-
-template <typename T> T SwigValueInit() {
- return T();
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-# define SWIGUNUSED __attribute__ ((__unused__))
-# else
-# define SWIGUNUSED
-# endif
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-
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-# endif
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-
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-# define SWIGUNUSEDPARM(p)
-# else
-# define SWIGUNUSEDPARM(p) p SWIGUNUSED
-# endif
-#endif
-
-/* internal SWIG method */
-#ifndef SWIGINTERN
-# define SWIGINTERN static SWIGUNUSED
-#endif
-
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-# define SWIGINTERNINLINE SWIGINTERN SWIGINLINE
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-
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-# if defined(STATIC_LINKED)
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-# define SWIGEXPORT __attribute__ ((visibility("default")))
-# else
-# define SWIGEXPORT
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-#endif
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-# if defined(_WIN32) || defined(__WIN32__) || defined(__CYGWIN__)
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-#endif
-
-
-
-/* Python.h has to appear first */
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-
-/* -----------------------------------------------------------------------------
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- * This file contains generic C API SWIG runtime support for pointer
- * type checking.
- * ----------------------------------------------------------------------------- */
-
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-
- But only do this if strictly necessary, ie, if you have problems
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- swig_cast_info *cast = ti->cast;
- /* if (ti->clientdata == clientdata) return; */
- ti->clientdata = clientdata;
-
- while (cast) {
- if (!cast->converter) {
- swig_type_info *tc = cast->type;
- if (!tc->clientdata) {
- SWIG_TypeClientData(tc, clientdata);
- }
- }
- cast = cast->next;
- }
-}
-SWIGRUNTIME void
-SWIG_TypeNewClientData(swig_type_info *ti, void *clientdata) {
- SWIG_TypeClientData(ti, clientdata);
- ti->owndata = 1;
-}
-
-/*
- Search for a swig_type_info structure only by mangled name
- Search is a O(log #types)
-
- We start searching at module start, and finish searching when start == end.
- Note: if start == end at the beginning of the function, we go all the way around
- the circular list.
-*/
-SWIGRUNTIME swig_type_info *
-SWIG_MangledTypeQueryModule(swig_module_info *start,
- swig_module_info *end,
- const char *name) {
- swig_module_info *iter = start;
- do {
- if (iter->size) {
- register size_t l = 0;
- register size_t r = iter->size - 1;
- do {
- /* since l+r >= 0, we can (>> 1) instead (/ 2) */
- register size_t i = (l + r) >> 1;
- const char *iname = iter->types[i]->name;
- if (iname) {
- register int compare = strcmp(name, iname);
- if (compare == 0) {
- return iter->types[i];
- } else if (compare < 0) {
- if (i) {
- r = i - 1;
- } else {
- break;
- }
- } else if (compare > 0) {
- l = i + 1;
- }
- } else {
- break; /* should never happen */
- }
- } while (l <= r);
- }
- iter = iter->next;
- } while (iter != end);
- return 0;
-}
-
-/*
- Search for a swig_type_info structure for either a mangled name or a human readable name.
- It first searches the mangled names of the types, which is a O(log #types)
- If a type is not found it then searches the human readable names, which is O(#types).
-
- We start searching at module start, and finish searching when start == end.
- Note: if start == end at the beginning of the function, we go all the way around
- the circular list.
-*/
-SWIGRUNTIME swig_type_info *
-SWIG_TypeQueryModule(swig_module_info *start,
- swig_module_info *end,
- const char *name) {
- /* STEP 1: Search the name field using binary search */
- swig_type_info *ret = SWIG_MangledTypeQueryModule(start, end, name);
- if (ret) {
- return ret;
- } else {
- /* STEP 2: If the type hasn't been found, do a complete search
- of the str field (the human readable name) */
- swig_module_info *iter = start;
- do {
- register size_t i = 0;
- for (; i < iter->size; ++i) {
- if (iter->types[i]->str && (SWIG_TypeEquiv(iter->types[i]->str, name)))
- return iter->types[i];
- }
- iter = iter->next;
- } while (iter != end);
- }
-
- /* neither found a match */
- return 0;
-}
-
-/*
- Pack binary data into a string
-*/
-SWIGRUNTIME char *
-SWIG_PackData(char *c, void *ptr, size_t sz) {
- static const char hex[17] = "0123456789abcdef";
- register const unsigned char *u = (unsigned char *) ptr;
- register const unsigned char *eu = u + sz;
- for (; u != eu; ++u) {
- register unsigned char uu = *u;
- *(c++) = hex[(uu & 0xf0) >> 4];
- *(c++) = hex[uu & 0xf];
- }
- return c;
-}
-
-/*
- Unpack binary data from a string
-*/
-SWIGRUNTIME const char *
-SWIG_UnpackData(const char *c, void *ptr, size_t sz) {
- register unsigned char *u = (unsigned char *) ptr;
- register const unsigned char *eu = u + sz;
- for (; u != eu; ++u) {
- register char d = *(c++);
- register unsigned char uu;
- if ((d >= '0') && (d <= '9'))
- uu = ((d - '0') << 4);
- else if ((d >= 'a') && (d <= 'f'))
- uu = ((d - ('a'-10)) << 4);
- else
- return (char *) 0;
- d = *(c++);
- if ((d >= '0') && (d <= '9'))
- uu |= (d - '0');
- else if ((d >= 'a') && (d <= 'f'))
- uu |= (d - ('a'-10));
- else
- return (char *) 0;
- *u = uu;
- }
- return c;
-}
-
-/*
- Pack 'void *' into a string buffer.
-*/
-SWIGRUNTIME char *
-SWIG_PackVoidPtr(char *buff, void *ptr, const char *name, size_t bsz) {
- char *r = buff;
- if ((2*sizeof(void *) + 2) > bsz) return 0;
- *(r++) = '_';
- r = SWIG_PackData(r,&ptr,sizeof(void *));
- if (strlen(name) + 1 > (bsz - (r - buff))) return 0;
- strcpy(r,name);
- return buff;
-}
-
-SWIGRUNTIME const char *
-SWIG_UnpackVoidPtr(const char *c, void **ptr, const char *name) {
- if (*c != '_') {
- if (strcmp(c,"NULL") == 0) {
- *ptr = (void *) 0;
- return name;
- } else {
- return 0;
- }
- }
- return SWIG_UnpackData(++c,ptr,sizeof(void *));
-}
-
-SWIGRUNTIME char *
-SWIG_PackDataName(char *buff, void *ptr, size_t sz, const char *name, size_t bsz) {
- char *r = buff;
- size_t lname = (name ? strlen(name) : 0);
- if ((2*sz + 2 + lname) > bsz) return 0;
- *(r++) = '_';
- r = SWIG_PackData(r,ptr,sz);
- if (lname) {
- strncpy(r,name,lname+1);
- } else {
- *r = 0;
- }
- return buff;
-}
-
-SWIGRUNTIME const char *
-SWIG_UnpackDataName(const char *c, void *ptr, size_t sz, const char *name) {
- if (*c != '_') {
- if (strcmp(c,"NULL") == 0) {
- memset(ptr,0,sz);
- return name;
- } else {
- return 0;
- }
- }
- return SWIG_UnpackData(++c,ptr,sz);
-}
-
-#ifdef __cplusplus
-}
-#endif
-
-/* Errors in SWIG */
-#define SWIG_UnknownError -1
-#define SWIG_IOError -2
-#define SWIG_RuntimeError -3
-#define SWIG_IndexError -4
-#define SWIG_TypeError -5
-#define SWIG_DivisionByZero -6
-#define SWIG_OverflowError -7
-#define SWIG_SyntaxError -8
-#define SWIG_ValueError -9
-#define SWIG_SystemError -10
-#define SWIG_AttributeError -11
-#define SWIG_MemoryError -12
-#define SWIG_NullReferenceError -13
-
-
-
-/* Compatibility macros for Python 3 */
-#if PY_VERSION_HEX >= 0x03000000
-
-#define PyClass_Check(obj) PyObject_IsInstance(obj, (PyObject *)&PyType_Type)
-#define PyInt_Check(x) PyLong_Check(x)
-#define PyInt_AsLong(x) PyLong_AsLong(x)
-#define PyInt_FromLong(x) PyLong_FromLong(x)
-#define PyString_Check(name) PyBytes_Check(name)
-#define PyString_FromString(x) PyUnicode_FromString(x)
-#define PyString_Format(fmt, args) PyUnicode_Format(fmt, args)
-#define PyString_AsString(str) PyBytes_AsString(str)
-#define PyString_Size(str) PyBytes_Size(str)
-#define PyString_InternFromString(key) PyUnicode_InternFromString(key)
-#define Py_TPFLAGS_HAVE_CLASS Py_TPFLAGS_BASETYPE
-#define PyString_AS_STRING(x) PyUnicode_AS_STRING(x)
-#define _PyLong_FromSsize_t(x) PyLong_FromSsize_t(x)
-
-#endif
-
-#ifndef Py_TYPE
-# define Py_TYPE(op) ((op)->ob_type)
-#endif
-
-/* SWIG APIs for compatibility of both Python 2 & 3 */
-
-#if PY_VERSION_HEX >= 0x03000000
-# define SWIG_Python_str_FromFormat PyUnicode_FromFormat
-#else
-# define SWIG_Python_str_FromFormat PyString_FromFormat
-#endif
-
-
-/* Warning: This function will allocate a new string in Python 3,
- * so please call SWIG_Python_str_DelForPy3(x) to free the space.
- */
-SWIGINTERN char*
-SWIG_Python_str_AsChar(PyObject *str)
-{
-#if PY_VERSION_HEX >= 0x03000000
- char *cstr;
- char *newstr;
- Py_ssize_t len;
- str = PyUnicode_AsUTF8String(str);
- PyBytes_AsStringAndSize(str, &cstr, &len);
- newstr = (char *) malloc(len+1);
- memcpy(newstr, cstr, len+1);
- Py_XDECREF(str);
- return newstr;
-#else
- return PyString_AsString(str);
-#endif
-}
-
-#if PY_VERSION_HEX >= 0x03000000
-# define SWIG_Python_str_DelForPy3(x) free( (void*) (x) )
-#else
-# define SWIG_Python_str_DelForPy3(x)
-#endif
-
-
-SWIGINTERN PyObject*
-SWIG_Python_str_FromChar(const char *c)
-{
-#if PY_VERSION_HEX >= 0x03000000
- return PyUnicode_FromString(c);
-#else
- return PyString_FromString(c);
-#endif
-}
-
-/* Add PyOS_snprintf for old Pythons */
-#if PY_VERSION_HEX < 0x02020000
-# if defined(_MSC_VER) || defined(__BORLANDC__) || defined(_WATCOM)
-# define PyOS_snprintf _snprintf
-# else
-# define PyOS_snprintf snprintf
-# endif
-#endif
-
-/* A crude PyString_FromFormat implementation for old Pythons */
-#if PY_VERSION_HEX < 0x02020000
-
-#ifndef SWIG_PYBUFFER_SIZE
-# define SWIG_PYBUFFER_SIZE 1024
-#endif
-
-static PyObject *
-PyString_FromFormat(const char *fmt, ...) {
- va_list ap;
- char buf[SWIG_PYBUFFER_SIZE * 2];
- int res;
- va_start(ap, fmt);
- res = vsnprintf(buf, sizeof(buf), fmt, ap);
- va_end(ap);
- return (res < 0 || res >= (int)sizeof(buf)) ? 0 : PyString_FromString(buf);
-}
-#endif
-
-/* Add PyObject_Del for old Pythons */
-#if PY_VERSION_HEX < 0x01060000
-# define PyObject_Del(op) PyMem_DEL((op))
-#endif
-#ifndef PyObject_DEL
-# define PyObject_DEL PyObject_Del
-#endif
-
-/* A crude PyExc_StopIteration exception for old Pythons */
-#if PY_VERSION_HEX < 0x02020000
-# ifndef PyExc_StopIteration
-# define PyExc_StopIteration PyExc_RuntimeError
-# endif
-# ifndef PyObject_GenericGetAttr
-# define PyObject_GenericGetAttr 0
-# endif
-#endif
-
-/* Py_NotImplemented is defined in 2.1 and up. */
-#if PY_VERSION_HEX < 0x02010000
-# ifndef Py_NotImplemented
-# define Py_NotImplemented PyExc_RuntimeError
-# endif
-#endif
-
-/* A crude PyString_AsStringAndSize implementation for old Pythons */
-#if PY_VERSION_HEX < 0x02010000
-# ifndef PyString_AsStringAndSize
-# define PyString_AsStringAndSize(obj, s, len) {*s = PyString_AsString(obj); *len = *s ? strlen(*s) : 0;}
-# endif
-#endif
-
-/* PySequence_Size for old Pythons */
-#if PY_VERSION_HEX < 0x02000000
-# ifndef PySequence_Size
-# define PySequence_Size PySequence_Length
-# endif
-#endif
-
-/* PyBool_FromLong for old Pythons */
-#if PY_VERSION_HEX < 0x02030000
-static
-PyObject *PyBool_FromLong(long ok)
-{
- PyObject *result = ok ? Py_True : Py_False;
- Py_INCREF(result);
- return result;
-}
-#endif
-
-/* Py_ssize_t for old Pythons */
-/* This code is as recommended by: */
-/* http://www.python.org/dev/peps/pep-0353/#conversion-guidelines */
-#if PY_VERSION_HEX < 0x02050000 && !defined(PY_SSIZE_T_MIN)
-typedef int Py_ssize_t;
-# define PY_SSIZE_T_MAX INT_MAX
-# define PY_SSIZE_T_MIN INT_MIN
-typedef inquiry lenfunc;
-typedef intargfunc ssizeargfunc;
-typedef intintargfunc ssizessizeargfunc;
-typedef intobjargproc ssizeobjargproc;
-typedef intintobjargproc ssizessizeobjargproc;
-typedef getreadbufferproc readbufferproc;
-typedef getwritebufferproc writebufferproc;
-typedef getsegcountproc segcountproc;
-typedef getcharbufferproc charbufferproc;
-static long PyNumber_AsSsize_t (PyObject *x, void *SWIGUNUSEDPARM(exc))
-{
- long result = 0;
- PyObject *i = PyNumber_Int(x);
- if (i) {
- result = PyInt_AsLong(i);
- Py_DECREF(i);
- }
- return result;
-}
-#endif
-
-#if PY_VERSION_HEX < 0x02040000
-#define Py_VISIT(op) \
- do { \
- if (op) { \
- int vret = visit((op), arg); \
- if (vret) \
- return vret; \
- } \
- } while (0)
-#endif
-
-#if PY_VERSION_HEX < 0x02030000
-typedef struct {
- PyTypeObject type;
- PyNumberMethods as_number;
- PyMappingMethods as_mapping;
- PySequenceMethods as_sequence;
- PyBufferProcs as_buffer;
- PyObject *name, *slots;
-} PyHeapTypeObject;
-#endif
-
-#if PY_VERSION_HEX < 0x02030000
-typedef destructor freefunc;
-#endif
-
-#if ((PY_MAJOR_VERSION == 2 && PY_MINOR_VERSION > 6) || \
- (PY_MAJOR_VERSION == 3 && PY_MINOR_VERSION > 0) || \
- (PY_MAJOR_VERSION > 3))
-# define SWIGPY_USE_CAPSULE
-# define SWIGPY_CAPSULE_NAME ((char*)"swig_runtime_data" SWIG_RUNTIME_VERSION ".type_pointer_capsule" SWIG_TYPE_TABLE_NAME)
-#endif
-
-#if PY_VERSION_HEX < 0x03020000
-#define PyDescr_TYPE(x) (((PyDescrObject *)(x))->d_type)
-#define PyDescr_NAME(x) (((PyDescrObject *)(x))->d_name)
-#endif
-
-/* -----------------------------------------------------------------------------
- * error manipulation
- * ----------------------------------------------------------------------------- */
-
-SWIGRUNTIME PyObject*
-SWIG_Python_ErrorType(int code) {
- PyObject* type = 0;
- switch(code) {
- case SWIG_MemoryError:
- type = PyExc_MemoryError;
- break;
- case SWIG_IOError:
- type = PyExc_IOError;
- break;
- case SWIG_RuntimeError:
- type = PyExc_RuntimeError;
- break;
- case SWIG_IndexError:
- type = PyExc_IndexError;
- break;
- case SWIG_TypeError:
- type = PyExc_TypeError;
- break;
- case SWIG_DivisionByZero:
- type = PyExc_ZeroDivisionError;
- break;
- case SWIG_OverflowError:
- type = PyExc_OverflowError;
- break;
- case SWIG_SyntaxError:
- type = PyExc_SyntaxError;
- break;
- case SWIG_ValueError:
- type = PyExc_ValueError;
- break;
- case SWIG_SystemError:
- type = PyExc_SystemError;
- break;
- case SWIG_AttributeError:
- type = PyExc_AttributeError;
- break;
- default:
- type = PyExc_RuntimeError;
- }
- return type;
-}
-
-
-SWIGRUNTIME void
-SWIG_Python_AddErrorMsg(const char* mesg)
-{
- PyObject *type = 0;
- PyObject *value = 0;
- PyObject *traceback = 0;
-
- if (PyErr_Occurred()) PyErr_Fetch(&type, &value, &traceback);
- if (value) {
- char *tmp;
- PyObject *old_str = PyObject_Str(value);
- PyErr_Clear();
- Py_XINCREF(type);
-
- PyErr_Format(type, "%s %s", tmp = SWIG_Python_str_AsChar(old_str), mesg);
- SWIG_Python_str_DelForPy3(tmp);
- Py_DECREF(old_str);
- Py_DECREF(value);
- } else {
- PyErr_SetString(PyExc_RuntimeError, mesg);
- }
-}
-
-#if defined(SWIG_PYTHON_NO_THREADS)
-# if defined(SWIG_PYTHON_THREADS)
-# undef SWIG_PYTHON_THREADS
-# endif
-#endif
-#if defined(SWIG_PYTHON_THREADS) /* Threading support is enabled */
-# if !defined(SWIG_PYTHON_USE_GIL) && !defined(SWIG_PYTHON_NO_USE_GIL)
-# if (PY_VERSION_HEX >= 0x02030000) /* For 2.3 or later, use the PyGILState calls */
-# define SWIG_PYTHON_USE_GIL
-# endif
-# endif
-# if defined(SWIG_PYTHON_USE_GIL) /* Use PyGILState threads calls */
-# ifndef SWIG_PYTHON_INITIALIZE_THREADS
-# define SWIG_PYTHON_INITIALIZE_THREADS PyEval_InitThreads()
-# endif
-# ifdef __cplusplus /* C++ code */
- class SWIG_Python_Thread_Block {
- bool status;
- PyGILState_STATE state;
- public:
- void end() { if (status) { PyGILState_Release(state); status = false;} }
- SWIG_Python_Thread_Block() : status(true), state(PyGILState_Ensure()) {}
- ~SWIG_Python_Thread_Block() { end(); }
- };
- class SWIG_Python_Thread_Allow {
- bool status;
- PyThreadState *save;
- public:
- void end() { if (status) { PyEval_RestoreThread(save); status = false; }}
- SWIG_Python_Thread_Allow() : status(true), save(PyEval_SaveThread()) {}
- ~SWIG_Python_Thread_Allow() { end(); }
- };
-# define SWIG_PYTHON_THREAD_BEGIN_BLOCK SWIG_Python_Thread_Block _swig_thread_block
-# define SWIG_PYTHON_THREAD_END_BLOCK _swig_thread_block.end()
-# define SWIG_PYTHON_THREAD_BEGIN_ALLOW SWIG_Python_Thread_Allow _swig_thread_allow
-# define SWIG_PYTHON_THREAD_END_ALLOW _swig_thread_allow.end()
-# else /* C code */
-# define SWIG_PYTHON_THREAD_BEGIN_BLOCK PyGILState_STATE _swig_thread_block = PyGILState_Ensure()
-# define SWIG_PYTHON_THREAD_END_BLOCK PyGILState_Release(_swig_thread_block)
-# define SWIG_PYTHON_THREAD_BEGIN_ALLOW PyThreadState *_swig_thread_allow = PyEval_SaveThread()
-# define SWIG_PYTHON_THREAD_END_ALLOW PyEval_RestoreThread(_swig_thread_allow)
-# endif
-# else /* Old thread way, not implemented, user must provide it */
-# if !defined(SWIG_PYTHON_INITIALIZE_THREADS)
-# define SWIG_PYTHON_INITIALIZE_THREADS
-# endif
-# if !defined(SWIG_PYTHON_THREAD_BEGIN_BLOCK)
-# define SWIG_PYTHON_THREAD_BEGIN_BLOCK
-# endif
-# if !defined(SWIG_PYTHON_THREAD_END_BLOCK)
-# define SWIG_PYTHON_THREAD_END_BLOCK
-# endif
-# if !defined(SWIG_PYTHON_THREAD_BEGIN_ALLOW)
-# define SWIG_PYTHON_THREAD_BEGIN_ALLOW
-# endif
-# if !defined(SWIG_PYTHON_THREAD_END_ALLOW)
-# define SWIG_PYTHON_THREAD_END_ALLOW
-# endif
-# endif
-#else /* No thread support */
-# define SWIG_PYTHON_INITIALIZE_THREADS
-# define SWIG_PYTHON_THREAD_BEGIN_BLOCK
-# define SWIG_PYTHON_THREAD_END_BLOCK
-# define SWIG_PYTHON_THREAD_BEGIN_ALLOW
-# define SWIG_PYTHON_THREAD_END_ALLOW
-#endif
-
-/* -----------------------------------------------------------------------------
- * Python API portion that goes into the runtime
- * ----------------------------------------------------------------------------- */
-
-#ifdef __cplusplus
-extern "C" {
-#endif
-
-/* -----------------------------------------------------------------------------
- * Constant declarations
- * ----------------------------------------------------------------------------- */
-
-/* Constant Types */
-#define SWIG_PY_POINTER 4
-#define SWIG_PY_BINARY 5
-
-/* Constant information structure */
-typedef struct swig_const_info {
- int type;
- char *name;
- long lvalue;
- double dvalue;
- void *pvalue;
- swig_type_info **ptype;
-} swig_const_info;
-
-
-/* -----------------------------------------------------------------------------
- * Wrapper of PyInstanceMethod_New() used in Python 3
- * It is exported to the generated module, used for -fastproxy
- * ----------------------------------------------------------------------------- */
-#if PY_VERSION_HEX >= 0x03000000
-SWIGRUNTIME PyObject* SWIG_PyInstanceMethod_New(PyObject *SWIGUNUSEDPARM(self), PyObject *func)
-{
- return PyInstanceMethod_New(func);
-}
-#else
-SWIGRUNTIME PyObject* SWIG_PyInstanceMethod_New(PyObject *SWIGUNUSEDPARM(self), PyObject *SWIGUNUSEDPARM(func))
-{
- return NULL;
-}
-#endif
-
-#ifdef __cplusplus
-}
-#endif
-
-
-/* -----------------------------------------------------------------------------
- * pyrun.swg
- *
- * This file contains the runtime support for Python modules
- * and includes code for managing global variables and pointer
- * type checking.
- *
- * ----------------------------------------------------------------------------- */
-
-/* Common SWIG API */
-
-/* for raw pointers */
-#define SWIG_Python_ConvertPtr(obj, pptr, type, flags) SWIG_Python_ConvertPtrAndOwn(obj, pptr, type, flags, 0)
-#define SWIG_ConvertPtr(obj, pptr, type, flags) SWIG_Python_ConvertPtr(obj, pptr, type, flags)
-#define SWIG_ConvertPtrAndOwn(obj,pptr,type,flags,own) SWIG_Python_ConvertPtrAndOwn(obj, pptr, type, flags, own)
-
-#ifdef SWIGPYTHON_BUILTIN
-#define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(self, ptr, type, flags)
-#else
-#define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags)
-#endif
-
-#define SWIG_InternalNewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags)
-
-#define SWIG_CheckImplicit(ty) SWIG_Python_CheckImplicit(ty)
-#define SWIG_AcquirePtr(ptr, src) SWIG_Python_AcquirePtr(ptr, src)
-#define swig_owntype int
-
-/* for raw packed data */
-#define SWIG_ConvertPacked(obj, ptr, sz, ty) SWIG_Python_ConvertPacked(obj, ptr, sz, ty)
-#define SWIG_NewPackedObj(ptr, sz, type) SWIG_Python_NewPackedObj(ptr, sz, type)
-
-/* for class or struct pointers */
-#define SWIG_ConvertInstance(obj, pptr, type, flags) SWIG_ConvertPtr(obj, pptr, type, flags)
-#define SWIG_NewInstanceObj(ptr, type, flags) SWIG_NewPointerObj(ptr, type, flags)
-
-/* for C or C++ function pointers */
-#define SWIG_ConvertFunctionPtr(obj, pptr, type) SWIG_Python_ConvertFunctionPtr(obj, pptr, type)
-#define SWIG_NewFunctionPtrObj(ptr, type) SWIG_Python_NewPointerObj(NULL, ptr, type, 0)
-
-/* for C++ member pointers, ie, member methods */
-#define SWIG_ConvertMember(obj, ptr, sz, ty) SWIG_Python_ConvertPacked(obj, ptr, sz, ty)
-#define SWIG_NewMemberObj(ptr, sz, type) SWIG_Python_NewPackedObj(ptr, sz, type)
-
-
-/* Runtime API */
-
-#define SWIG_GetModule(clientdata) SWIG_Python_GetModule()
-#define SWIG_SetModule(clientdata, pointer) SWIG_Python_SetModule(pointer)
-#define SWIG_NewClientData(obj) SwigPyClientData_New(obj)
-
-#define SWIG_SetErrorObj SWIG_Python_SetErrorObj
-#define SWIG_SetErrorMsg SWIG_Python_SetErrorMsg
-#define SWIG_ErrorType(code) SWIG_Python_ErrorType(code)
-#define SWIG_Error(code, msg) SWIG_Python_SetErrorMsg(SWIG_ErrorType(code), msg)
-#define SWIG_fail goto fail
-
-
-/* Runtime API implementation */
-
-/* Error manipulation */
-
-SWIGINTERN void
-SWIG_Python_SetErrorObj(PyObject *errtype, PyObject *obj) {
- SWIG_PYTHON_THREAD_BEGIN_BLOCK;
- PyErr_SetObject(errtype, obj);
- Py_DECREF(obj);
- SWIG_PYTHON_THREAD_END_BLOCK;
-}
-
-SWIGINTERN void
-SWIG_Python_SetErrorMsg(PyObject *errtype, const char *msg) {
- SWIG_PYTHON_THREAD_BEGIN_BLOCK;
- PyErr_SetString(errtype, (char *) msg);
- SWIG_PYTHON_THREAD_END_BLOCK;
-}
-
-#define SWIG_Python_Raise(obj, type, desc) SWIG_Python_SetErrorObj(SWIG_Python_ExceptionType(desc), obj)
-
-/* Set a constant value */
-
-#if defined(SWIGPYTHON_BUILTIN)
-
-SWIGINTERN void
-SwigPyBuiltin_AddPublicSymbol(PyObject *seq, const char *key) {
- PyObject *s = PyString_InternFromString(key);
- PyList_Append(seq, s);
- Py_DECREF(s);
-}
-
-SWIGINTERN void
-SWIG_Python_SetConstant(PyObject *d, PyObject *public_interface, const char *name, PyObject *obj) {
- PyDict_SetItemString(d, (char *)name, obj);
- Py_DECREF(obj);
- if (public_interface)
- SwigPyBuiltin_AddPublicSymbol(public_interface, name);
-}
-
-#else
-
-SWIGINTERN void
-SWIG_Python_SetConstant(PyObject *d, const char *name, PyObject *obj) {
- PyDict_SetItemString(d, (char *)name, obj);
- Py_DECREF(obj);
-}
-
-#endif
-
-/* Append a value to the result obj */
-
-SWIGINTERN PyObject*
-SWIG_Python_AppendOutput(PyObject* result, PyObject* obj) {
-#if !defined(SWIG_PYTHON_OUTPUT_TUPLE)
- if (!result) {
- result = obj;
- } else if (result == Py_None) {
- Py_DECREF(result);
- result = obj;
- } else {
- if (!PyList_Check(result)) {
- PyObject *o2 = result;
- result = PyList_New(1);
- PyList_SetItem(result, 0, o2);
- }
- PyList_Append(result,obj);
- Py_DECREF(obj);
- }
- return result;
-#else
- PyObject* o2;
- PyObject* o3;
- if (!result) {
- result = obj;
- } else if (result == Py_None) {
- Py_DECREF(result);
- result = obj;
- } else {
- if (!PyTuple_Check(result)) {
- o2 = result;
- result = PyTuple_New(1);
- PyTuple_SET_ITEM(result, 0, o2);
- }
- o3 = PyTuple_New(1);
- PyTuple_SET_ITEM(o3, 0, obj);
- o2 = result;
- result = PySequence_Concat(o2, o3);
- Py_DECREF(o2);
- Py_DECREF(o3);
- }
- return result;
-#endif
-}
-
-/* Unpack the argument tuple */
-
-SWIGINTERN int
-SWIG_Python_UnpackTuple(PyObject *args, const char *name, Py_ssize_t min, Py_ssize_t max, PyObject **objs)
-{
- if (!args) {
- if (!min && !max) {
- return 1;
- } else {
- PyErr_Format(PyExc_TypeError, "%s expected %s%d arguments, got none",
- name, (min == max ? "" : "at least "), (int)min);
- return 0;
- }
- }
- if (!PyTuple_Check(args)) {
- if (min <= 1 && max >= 1) {
- register int i;
- objs[0] = args;
- for (i = 1; i < max; ++i) {
- objs[i] = 0;
- }
- return 2;
- }
- PyErr_SetString(PyExc_SystemError, "UnpackTuple() argument list is not a tuple");
- return 0;
- } else {
- register Py_ssize_t l = PyTuple_GET_SIZE(args);
- if (l < min) {
- PyErr_Format(PyExc_TypeError, "%s expected %s%d arguments, got %d",
- name, (min == max ? "" : "at least "), (int)min, (int)l);
- return 0;
- } else if (l > max) {
- PyErr_Format(PyExc_TypeError, "%s expected %s%d arguments, got %d",
- name, (min == max ? "" : "at most "), (int)max, (int)l);
- return 0;
- } else {
- register int i;
- for (i = 0; i < l; ++i) {
- objs[i] = PyTuple_GET_ITEM(args, i);
- }
- for (; l < max; ++l) {
- objs[l] = 0;
- }
- return i + 1;
- }
- }
-}
-
-/* A functor is a function object with one single object argument */
-#if PY_VERSION_HEX >= 0x02020000
-#define SWIG_Python_CallFunctor(functor, obj) PyObject_CallFunctionObjArgs(functor, obj, NULL);
-#else
-#define SWIG_Python_CallFunctor(functor, obj) PyObject_CallFunction(functor, "O", obj);
-#endif
-
-/*
- Helper for static pointer initialization for both C and C++ code, for example
- static PyObject *SWIG_STATIC_POINTER(MyVar) = NewSomething(...);
-*/
-#ifdef __cplusplus
-#define SWIG_STATIC_POINTER(var) var
-#else
-#define SWIG_STATIC_POINTER(var) var = 0; if (!var) var
-#endif
-
-/* -----------------------------------------------------------------------------
- * Pointer declarations
- * ----------------------------------------------------------------------------- */
-
-/* Flags for new pointer objects */
-#define SWIG_POINTER_NOSHADOW (SWIG_POINTER_OWN << 1)
-#define SWIG_POINTER_NEW (SWIG_POINTER_NOSHADOW | SWIG_POINTER_OWN)
-
-#define SWIG_POINTER_IMPLICIT_CONV (SWIG_POINTER_DISOWN << 1)
-
-#define SWIG_BUILTIN_TP_INIT (SWIG_POINTER_OWN << 2)
-#define SWIG_BUILTIN_INIT (SWIG_BUILTIN_TP_INIT | SWIG_POINTER_OWN)
-
-#ifdef __cplusplus
-extern "C" {
-#endif
-
-/* How to access Py_None */
-#if defined(_WIN32) || defined(__WIN32__) || defined(__CYGWIN__)
-# ifndef SWIG_PYTHON_NO_BUILD_NONE
-# ifndef SWIG_PYTHON_BUILD_NONE
-# define SWIG_PYTHON_BUILD_NONE
-# endif
-# endif
-#endif
-
-#ifdef SWIG_PYTHON_BUILD_NONE
-# ifdef Py_None
-# undef Py_None
-# define Py_None SWIG_Py_None()
-# endif
-SWIGRUNTIMEINLINE PyObject *
-_SWIG_Py_None(void)
-{
- PyObject *none = Py_BuildValue((char*)"");
- Py_DECREF(none);
- return none;
-}
-SWIGRUNTIME PyObject *
-SWIG_Py_None(void)
-{
- static PyObject *SWIG_STATIC_POINTER(none) = _SWIG_Py_None();
- return none;
-}
-#endif
-
-/* The python void return value */
-
-SWIGRUNTIMEINLINE PyObject *
-SWIG_Py_Void(void)
-{
- PyObject *none = Py_None;
- Py_INCREF(none);
- return none;
-}
-
-/* SwigPyClientData */
-
-typedef struct {
- PyObject *klass;
- PyObject *newraw;
- PyObject *newargs;
- PyObject *destroy;
- int delargs;
- int implicitconv;
- PyTypeObject *pytype;
-} SwigPyClientData;
-
-SWIGRUNTIMEINLINE int
-SWIG_Python_CheckImplicit(swig_type_info *ty)
-{
- SwigPyClientData *data = (SwigPyClientData *)ty->clientdata;
- return data ? data->implicitconv : 0;
-}
-
-SWIGRUNTIMEINLINE PyObject *
-SWIG_Python_ExceptionType(swig_type_info *desc) {
- SwigPyClientData *data = desc ? (SwigPyClientData *) desc->clientdata : 0;
- PyObject *klass = data ? data->klass : 0;
- return (klass ? klass : PyExc_RuntimeError);
-}
-
-
-SWIGRUNTIME SwigPyClientData *
-SwigPyClientData_New(PyObject* obj)
-{
- if (!obj) {
- return 0;
- } else {
- SwigPyClientData *data = (SwigPyClientData *)malloc(sizeof(SwigPyClientData));
- /* the klass element */
- data->klass = obj;
- Py_INCREF(data->klass);
- /* the newraw method and newargs arguments used to create a new raw instance */
- if (PyClass_Check(obj)) {
- data->newraw = 0;
- data->newargs = obj;
- Py_INCREF(obj);
- } else {
-#if (PY_VERSION_HEX < 0x02020000)
- data->newraw = 0;
-#else
- data->newraw = PyObject_GetAttrString(data->klass, (char *)"__new__");
-#endif
- if (data->newraw) {
- Py_INCREF(data->newraw);
- data->newargs = PyTuple_New(1);
- PyTuple_SetItem(data->newargs, 0, obj);
- } else {
- data->newargs = obj;
- }
- Py_INCREF(data->newargs);
- }
- /* the destroy method, aka as the C++ delete method */
- data->destroy = PyObject_GetAttrString(data->klass, (char *)"__swig_destroy__");
- if (PyErr_Occurred()) {
- PyErr_Clear();
- data->destroy = 0;
- }
- if (data->destroy) {
- int flags;
- Py_INCREF(data->destroy);
- flags = PyCFunction_GET_FLAGS(data->destroy);
-#ifdef METH_O
- data->delargs = !(flags & (METH_O));
-#else
- data->delargs = 0;
-#endif
- } else {
- data->delargs = 0;
- }
- data->implicitconv = 0;
- data->pytype = 0;
- return data;
- }
-}
-
-SWIGRUNTIME void
-SwigPyClientData_Del(SwigPyClientData *data) {
- Py_XDECREF(data->newraw);
- Py_XDECREF(data->newargs);
- Py_XDECREF(data->destroy);
-}
-
-/* =============== SwigPyObject =====================*/
-
-typedef struct {
- PyObject_HEAD
- void *ptr;
- swig_type_info *ty;
- int own;
- PyObject *next;
-#ifdef SWIGPYTHON_BUILTIN
- PyObject *dict;
-#endif
-} SwigPyObject;
-
-SWIGRUNTIME PyObject *
-SwigPyObject_long(SwigPyObject *v)
-{
- return PyLong_FromVoidPtr(v->ptr);
-}
-
-SWIGRUNTIME PyObject *
-SwigPyObject_format(const char* fmt, SwigPyObject *v)
-{
- PyObject *res = NULL;
- PyObject *args = PyTuple_New(1);
- if (args) {
- if (PyTuple_SetItem(args, 0, SwigPyObject_long(v)) == 0) {
- PyObject *ofmt = SWIG_Python_str_FromChar(fmt);
- if (ofmt) {
-#if PY_VERSION_HEX >= 0x03000000
- res = PyUnicode_Format(ofmt,args);
-#else
- res = PyString_Format(ofmt,args);
-#endif
- Py_DECREF(ofmt);
- }
- Py_DECREF(args);
- }
- }
- return res;
-}
-
-SWIGRUNTIME PyObject *
-SwigPyObject_oct(SwigPyObject *v)
-{
- return SwigPyObject_format("%o",v);
-}
-
-SWIGRUNTIME PyObject *
-SwigPyObject_hex(SwigPyObject *v)
-{
- return SwigPyObject_format("%x",v);
-}
-
-SWIGRUNTIME PyObject *
-#ifdef METH_NOARGS
-SwigPyObject_repr(SwigPyObject *v)
-#else
-SwigPyObject_repr(SwigPyObject *v, PyObject *args)
-#endif
-{
- const char *name = SWIG_TypePrettyName(v->ty);
- PyObject *repr = SWIG_Python_str_FromFormat("<Swig Object of type '%s' at %p>", name, (void *)v);
- if (v->next) {
-# ifdef METH_NOARGS
- PyObject *nrep = SwigPyObject_repr((SwigPyObject *)v->next);
-# else
- PyObject *nrep = SwigPyObject_repr((SwigPyObject *)v->next, args);
-# endif
-# if PY_VERSION_HEX >= 0x03000000
- PyObject *joined = PyUnicode_Concat(repr, nrep);
- Py_DecRef(repr);
- Py_DecRef(nrep);
- repr = joined;
-# else
- PyString_ConcatAndDel(&repr,nrep);
-# endif
- }
- return repr;
-}
-
-SWIGRUNTIME int
-SwigPyObject_print(SwigPyObject *v, FILE *fp, int SWIGUNUSEDPARM(flags))
-{
- char *str;
-#ifdef METH_NOARGS
- PyObject *repr = SwigPyObject_repr(v);
-#else
- PyObject *repr = SwigPyObject_repr(v, NULL);
-#endif
- if (repr) {
- str = SWIG_Python_str_AsChar(repr);
- fputs(str, fp);
- SWIG_Python_str_DelForPy3(str);
- Py_DECREF(repr);
- return 0;
- } else {
- return 1;
- }
-}
-
-SWIGRUNTIME PyObject *
-SwigPyObject_str(SwigPyObject *v)
-{
- char result[SWIG_BUFFER_SIZE];
- return SWIG_PackVoidPtr(result, v->ptr, v->ty->name, sizeof(result)) ?
- SWIG_Python_str_FromChar(result) : 0;
-}
-
-SWIGRUNTIME int
-SwigPyObject_compare(SwigPyObject *v, SwigPyObject *w)
-{
- void *i = v->ptr;
- void *j = w->ptr;
- return (i < j) ? -1 : ((i > j) ? 1 : 0);
-}
-
-/* Added for Python 3.x, would it also be useful for Python 2.x? */
-SWIGRUNTIME PyObject*
-SwigPyObject_richcompare(SwigPyObject *v, SwigPyObject *w, int op)
-{
- PyObject* res;
- if( op != Py_EQ && op != Py_NE ) {
- Py_INCREF(Py_NotImplemented);
- return Py_NotImplemented;
- }
- res = PyBool_FromLong( (SwigPyObject_compare(v, w)==0) == (op == Py_EQ) ? 1 : 0);
- return res;
-}
-
-
-SWIGRUNTIME PyTypeObject* SwigPyObject_TypeOnce(void);
-
-#ifdef SWIGPYTHON_BUILTIN
-static swig_type_info *SwigPyObject_stype = 0;
-SWIGRUNTIME PyTypeObject*
-SwigPyObject_type(void) {
- SwigPyClientData *cd;
- assert(SwigPyObject_stype);
- cd = (SwigPyClientData*) SwigPyObject_stype->clientdata;
- assert(cd);
- assert(cd->pytype);
- return cd->pytype;
-}
-#else
-SWIGRUNTIME PyTypeObject*
-SwigPyObject_type(void) {
- static PyTypeObject *SWIG_STATIC_POINTER(type) = SwigPyObject_TypeOnce();
- return type;
-}
-#endif
-
-SWIGRUNTIMEINLINE int
-SwigPyObject_Check(PyObject *op) {
-#ifdef SWIGPYTHON_BUILTIN
- PyTypeObject *target_tp = SwigPyObject_type();
- if (PyType_IsSubtype(op->ob_type, target_tp))
- return 1;
- return (strcmp(op->ob_type->tp_name, "SwigPyObject") == 0);
-#else
- return (Py_TYPE(op) == SwigPyObject_type())
- || (strcmp(Py_TYPE(op)->tp_name,"SwigPyObject") == 0);
-#endif
-}
-
-SWIGRUNTIME PyObject *
-SwigPyObject_New(void *ptr, swig_type_info *ty, int own);
-
-SWIGRUNTIME void
-SwigPyObject_dealloc(PyObject *v)
-{
- SwigPyObject *sobj = (SwigPyObject *) v;
- PyObject *next = sobj->next;
- if (sobj->own == SWIG_POINTER_OWN) {
- swig_type_info *ty = sobj->ty;
- SwigPyClientData *data = ty ? (SwigPyClientData *) ty->clientdata : 0;
- PyObject *destroy = data ? data->destroy : 0;
- if (destroy) {
- /* destroy is always a VARARGS method */
- PyObject *res;
- if (data->delargs) {
- /* we need to create a temporary object to carry the destroy operation */
- PyObject *tmp = SwigPyObject_New(sobj->ptr, ty, 0);
- res = SWIG_Python_CallFunctor(destroy, tmp);
- Py_DECREF(tmp);
- } else {
- PyCFunction meth = PyCFunction_GET_FUNCTION(destroy);
- PyObject *mself = PyCFunction_GET_SELF(destroy);
- res = ((*meth)(mself, v));
- }
- Py_XDECREF(res);
- }
-#if !defined(SWIG_PYTHON_SILENT_MEMLEAK)
- else {
- const char *name = SWIG_TypePrettyName(ty);
- printf("swig/python detected a memory leak of type '%s', no destructor found.\n", (name ? name : "unknown"));
- }
-#endif
- }
- Py_XDECREF(next);
- PyObject_DEL(v);
-}
-
-SWIGRUNTIME PyObject*
-SwigPyObject_append(PyObject* v, PyObject* next)
-{
- SwigPyObject *sobj = (SwigPyObject *) v;
-#ifndef METH_O
- PyObject *tmp = 0;
- if (!PyArg_ParseTuple(next,(char *)"O:append", &tmp)) return NULL;
- next = tmp;
-#endif
- if (!SwigPyObject_Check(next)) {
- return NULL;
- }
- sobj->next = next;
- Py_INCREF(next);
- return SWIG_Py_Void();
-}
-
-SWIGRUNTIME PyObject*
-#ifdef METH_NOARGS
-SwigPyObject_next(PyObject* v)
-#else
-SwigPyObject_next(PyObject* v, PyObject *SWIGUNUSEDPARM(args))
-#endif
-{
- SwigPyObject *sobj = (SwigPyObject *) v;
- if (sobj->next) {
- Py_INCREF(sobj->next);
- return sobj->next;
- } else {
- return SWIG_Py_Void();
- }
-}
-
-SWIGINTERN PyObject*
-#ifdef METH_NOARGS
-SwigPyObject_disown(PyObject *v)
-#else
-SwigPyObject_disown(PyObject* v, PyObject *SWIGUNUSEDPARM(args))
-#endif
-{
- SwigPyObject *sobj = (SwigPyObject *)v;
- sobj->own = 0;
- return SWIG_Py_Void();
-}
-
-SWIGINTERN PyObject*
-#ifdef METH_NOARGS
-SwigPyObject_acquire(PyObject *v)
-#else
-SwigPyObject_acquire(PyObject* v, PyObject *SWIGUNUSEDPARM(args))
-#endif
-{
- SwigPyObject *sobj = (SwigPyObject *)v;
- sobj->own = SWIG_POINTER_OWN;
- return SWIG_Py_Void();
-}
-
-SWIGINTERN PyObject*
-SwigPyObject_own(PyObject *v, PyObject *args)
-{
- PyObject *val = 0;
-#if (PY_VERSION_HEX < 0x02020000)
- if (!PyArg_ParseTuple(args,(char *)"|O:own",&val))
-#else
- if (!PyArg_UnpackTuple(args, (char *)"own", 0, 1, &val))
-#endif
- {
- return NULL;
- }
- else
- {
- SwigPyObject *sobj = (SwigPyObject *)v;
- PyObject *obj = PyBool_FromLong(sobj->own);
- if (val) {
-#ifdef METH_NOARGS
- if (PyObject_IsTrue(val)) {
- SwigPyObject_acquire(v);
- } else {
- SwigPyObject_disown(v);
- }
-#else
- if (PyObject_IsTrue(val)) {
- SwigPyObject_acquire(v,args);
- } else {
- SwigPyObject_disown(v,args);
- }
-#endif
- }
- return obj;
- }
-}
-
-#ifdef METH_O
-static PyMethodDef
-swigobject_methods[] = {
- {(char *)"disown", (PyCFunction)SwigPyObject_disown, METH_NOARGS, (char *)"releases ownership of the pointer"},
- {(char *)"acquire", (PyCFunction)SwigPyObject_acquire, METH_NOARGS, (char *)"aquires ownership of the pointer"},
- {(char *)"own", (PyCFunction)SwigPyObject_own, METH_VARARGS, (char *)"returns/sets ownership of the pointer"},
- {(char *)"append", (PyCFunction)SwigPyObject_append, METH_O, (char *)"appends another 'this' object"},
- {(char *)"next", (PyCFunction)SwigPyObject_next, METH_NOARGS, (char *)"returns the next 'this' object"},
- {(char *)"__repr__",(PyCFunction)SwigPyObject_repr, METH_NOARGS, (char *)"returns object representation"},
- {0, 0, 0, 0}
-};
-#else
-static PyMethodDef
-swigobject_methods[] = {
- {(char *)"disown", (PyCFunction)SwigPyObject_disown, METH_VARARGS, (char *)"releases ownership of the pointer"},
- {(char *)"acquire", (PyCFunction)SwigPyObject_acquire, METH_VARARGS, (char *)"aquires ownership of the pointer"},
- {(char *)"own", (PyCFunction)SwigPyObject_own, METH_VARARGS, (char *)"returns/sets ownership of the pointer"},
- {(char *)"append", (PyCFunction)SwigPyObject_append, METH_VARARGS, (char *)"appends another 'this' object"},
- {(char *)"next", (PyCFunction)SwigPyObject_next, METH_VARARGS, (char *)"returns the next 'this' object"},
- {(char *)"__repr__",(PyCFunction)SwigPyObject_repr, METH_VARARGS, (char *)"returns object representation"},
- {0, 0, 0, 0}
-};
-#endif
-
-#if PY_VERSION_HEX < 0x02020000
-SWIGINTERN PyObject *
-SwigPyObject_getattr(SwigPyObject *sobj,char *name)
-{
- return Py_FindMethod(swigobject_methods, (PyObject *)sobj, name);
-}
-#endif
-
-SWIGRUNTIME PyTypeObject*
-SwigPyObject_TypeOnce(void) {
- static char swigobject_doc[] = "Swig object carries a C/C++ instance pointer";
-
- static PyNumberMethods SwigPyObject_as_number = {
- (binaryfunc)0, /*nb_add*/
- (binaryfunc)0, /*nb_subtract*/
- (binaryfunc)0, /*nb_multiply*/
- /* nb_divide removed in Python 3 */
-#if PY_VERSION_HEX < 0x03000000
- (binaryfunc)0, /*nb_divide*/
-#endif
- (binaryfunc)0, /*nb_remainder*/
- (binaryfunc)0, /*nb_divmod*/
- (ternaryfunc)0,/*nb_power*/
- (unaryfunc)0, /*nb_negative*/
- (unaryfunc)0, /*nb_positive*/
- (unaryfunc)0, /*nb_absolute*/
- (inquiry)0, /*nb_nonzero*/
- 0, /*nb_invert*/
- 0, /*nb_lshift*/
- 0, /*nb_rshift*/
- 0, /*nb_and*/
- 0, /*nb_xor*/
- 0, /*nb_or*/
-#if PY_VERSION_HEX < 0x03000000
- 0, /*nb_coerce*/
-#endif
- (unaryfunc)SwigPyObject_long, /*nb_int*/
-#if PY_VERSION_HEX < 0x03000000
- (unaryfunc)SwigPyObject_long, /*nb_long*/
-#else
- 0, /*nb_reserved*/
-#endif
- (unaryfunc)0, /*nb_float*/
-#if PY_VERSION_HEX < 0x03000000
- (unaryfunc)SwigPyObject_oct, /*nb_oct*/
- (unaryfunc)SwigPyObject_hex, /*nb_hex*/
-#endif
-#if PY_VERSION_HEX >= 0x03000000 /* 3.0 */
- 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 /* nb_inplace_add -> nb_index, nb_inplace_divide removed */
-#elif PY_VERSION_HEX >= 0x02050000 /* 2.5.0 */
- 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 /* nb_inplace_add -> nb_index */
-#elif PY_VERSION_HEX >= 0x02020000 /* 2.2.0 */
- 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 /* nb_inplace_add -> nb_inplace_true_divide */
-#elif PY_VERSION_HEX >= 0x02000000 /* 2.0.0 */
- 0,0,0,0,0,0,0,0,0,0,0 /* nb_inplace_add -> nb_inplace_or */
-#endif
- };
-
- static PyTypeObject swigpyobject_type;
- static int type_init = 0;
- if (!type_init) {
- const PyTypeObject tmp = {
- /* PyObject header changed in Python 3 */
-#if PY_VERSION_HEX >= 0x03000000
- PyVarObject_HEAD_INIT(NULL, 0)
-#else
- PyObject_HEAD_INIT(NULL)
- 0, /* ob_size */
-#endif
- (char *)"SwigPyObject", /* tp_name */
- sizeof(SwigPyObject), /* tp_basicsize */
- 0, /* tp_itemsize */
- (destructor)SwigPyObject_dealloc, /* tp_dealloc */
- (printfunc)SwigPyObject_print, /* tp_print */
-#if PY_VERSION_HEX < 0x02020000
- (getattrfunc)SwigPyObject_getattr, /* tp_getattr */
-#else
- (getattrfunc)0, /* tp_getattr */
-#endif
- (setattrfunc)0, /* tp_setattr */
-#if PY_VERSION_HEX >= 0x03000000
- 0, /* tp_reserved in 3.0.1, tp_compare in 3.0.0 but not used */
-#else
- (cmpfunc)SwigPyObject_compare, /* tp_compare */
-#endif
- (reprfunc)SwigPyObject_repr, /* tp_repr */
- &SwigPyObject_as_number, /* tp_as_number */
- 0, /* tp_as_sequence */
- 0, /* tp_as_mapping */
- (hashfunc)0, /* tp_hash */
- (ternaryfunc)0, /* tp_call */
- (reprfunc)SwigPyObject_str, /* tp_str */
- PyObject_GenericGetAttr, /* tp_getattro */
- 0, /* tp_setattro */
- 0, /* tp_as_buffer */
- Py_TPFLAGS_DEFAULT, /* tp_flags */
- swigobject_doc, /* tp_doc */
- 0, /* tp_traverse */
- 0, /* tp_clear */
- (richcmpfunc)SwigPyObject_richcompare,/* tp_richcompare */
- 0, /* tp_weaklistoffset */
-#if PY_VERSION_HEX >= 0x02020000
- 0, /* tp_iter */
- 0, /* tp_iternext */
- swigobject_methods, /* tp_methods */
- 0, /* tp_members */
- 0, /* tp_getset */
- 0, /* tp_base */
- 0, /* tp_dict */
- 0, /* tp_descr_get */
- 0, /* tp_descr_set */
- 0, /* tp_dictoffset */
- 0, /* tp_init */
- 0, /* tp_alloc */
- 0, /* tp_new */
- 0, /* tp_free */
- 0, /* tp_is_gc */
- 0, /* tp_bases */
- 0, /* tp_mro */
- 0, /* tp_cache */
- 0, /* tp_subclasses */
- 0, /* tp_weaklist */
-#endif
-#if PY_VERSION_HEX >= 0x02030000
- 0, /* tp_del */
-#endif
-#if PY_VERSION_HEX >= 0x02060000
- 0, /* tp_version */
-#endif
-#ifdef COUNT_ALLOCS
- 0,0,0,0 /* tp_alloc -> tp_next */
-#endif
- };
- swigpyobject_type = tmp;
- type_init = 1;
-#if PY_VERSION_HEX < 0x02020000
- swigpyobject_type.ob_type = &PyType_Type;
-#else
- if (PyType_Ready(&swigpyobject_type) < 0)
- return NULL;
-#endif
- }
- return &swigpyobject_type;
-}
-
-SWIGRUNTIME PyObject *
-SwigPyObject_New(void *ptr, swig_type_info *ty, int own)
-{
- SwigPyObject *sobj = PyObject_NEW(SwigPyObject, SwigPyObject_type());
- if (sobj) {
- sobj->ptr = ptr;
- sobj->ty = ty;
- sobj->own = own;
- sobj->next = 0;
- }
- return (PyObject *)sobj;
-}
-
-/* -----------------------------------------------------------------------------
- * Implements a simple Swig Packed type, and use it instead of string
- * ----------------------------------------------------------------------------- */
-
-typedef struct {
- PyObject_HEAD
- void *pack;
- swig_type_info *ty;
- size_t size;
-} SwigPyPacked;
-
-SWIGRUNTIME int
-SwigPyPacked_print(SwigPyPacked *v, FILE *fp, int SWIGUNUSEDPARM(flags))
-{
- char result[SWIG_BUFFER_SIZE];
- fputs("<Swig Packed ", fp);
- if (SWIG_PackDataName(result, v->pack, v->size, 0, sizeof(result))) {
- fputs("at ", fp);
- fputs(result, fp);
- }
- fputs(v->ty->name,fp);
- fputs(">", fp);
- return 0;
-}
-
-SWIGRUNTIME PyObject *
-SwigPyPacked_repr(SwigPyPacked *v)
-{
- char result[SWIG_BUFFER_SIZE];
- if (SWIG_PackDataName(result, v->pack, v->size, 0, sizeof(result))) {
- return SWIG_Python_str_FromFormat("<Swig Packed at %s%s>", result, v->ty->name);
- } else {
- return SWIG_Python_str_FromFormat("<Swig Packed %s>", v->ty->name);
- }
-}
-
-SWIGRUNTIME PyObject *
-SwigPyPacked_str(SwigPyPacked *v)
-{
- char result[SWIG_BUFFER_SIZE];
- if (SWIG_PackDataName(result, v->pack, v->size, 0, sizeof(result))){
- return SWIG_Python_str_FromFormat("%s%s", result, v->ty->name);
- } else {
- return SWIG_Python_str_FromChar(v->ty->name);
- }
-}
-
-SWIGRUNTIME int
-SwigPyPacked_compare(SwigPyPacked *v, SwigPyPacked *w)
-{
- size_t i = v->size;
- size_t j = w->size;
- int s = (i < j) ? -1 : ((i > j) ? 1 : 0);
- return s ? s : strncmp((char *)v->pack, (char *)w->pack, 2*v->size);
-}
-
-SWIGRUNTIME PyTypeObject* SwigPyPacked_TypeOnce(void);
-
-SWIGRUNTIME PyTypeObject*
-SwigPyPacked_type(void) {
- static PyTypeObject *SWIG_STATIC_POINTER(type) = SwigPyPacked_TypeOnce();
- return type;
-}
-
-SWIGRUNTIMEINLINE int
-SwigPyPacked_Check(PyObject *op) {
- return ((op)->ob_type == SwigPyPacked_TypeOnce())
- || (strcmp((op)->ob_type->tp_name,"SwigPyPacked") == 0);
-}
-
-SWIGRUNTIME void
-SwigPyPacked_dealloc(PyObject *v)
-{
- if (SwigPyPacked_Check(v)) {
- SwigPyPacked *sobj = (SwigPyPacked *) v;
- free(sobj->pack);
- }
- PyObject_DEL(v);
-}
-
-SWIGRUNTIME PyTypeObject*
-SwigPyPacked_TypeOnce(void) {
- static char swigpacked_doc[] = "Swig object carries a C/C++ instance pointer";
- static PyTypeObject swigpypacked_type;
- static int type_init = 0;
- if (!type_init) {
- const PyTypeObject tmp = {
- /* PyObject header changed in Python 3 */
-#if PY_VERSION_HEX>=0x03000000
- PyVarObject_HEAD_INIT(NULL, 0)
-#else
- PyObject_HEAD_INIT(NULL)
- 0, /* ob_size */
-#endif
- (char *)"SwigPyPacked", /* tp_name */
- sizeof(SwigPyPacked), /* tp_basicsize */
- 0, /* tp_itemsize */
- (destructor)SwigPyPacked_dealloc, /* tp_dealloc */
- (printfunc)SwigPyPacked_print, /* tp_print */
- (getattrfunc)0, /* tp_getattr */
- (setattrfunc)0, /* tp_setattr */
-#if PY_VERSION_HEX>=0x03000000
- 0, /* tp_reserved in 3.0.1 */
-#else
- (cmpfunc)SwigPyPacked_compare, /* tp_compare */
-#endif
- (reprfunc)SwigPyPacked_repr, /* tp_repr */
- 0, /* tp_as_number */
- 0, /* tp_as_sequence */
- 0, /* tp_as_mapping */
- (hashfunc)0, /* tp_hash */
- (ternaryfunc)0, /* tp_call */
- (reprfunc)SwigPyPacked_str, /* tp_str */
- PyObject_GenericGetAttr, /* tp_getattro */
- 0, /* tp_setattro */
- 0, /* tp_as_buffer */
- Py_TPFLAGS_DEFAULT, /* tp_flags */
- swigpacked_doc, /* tp_doc */
- 0, /* tp_traverse */
- 0, /* tp_clear */
- 0, /* tp_richcompare */
- 0, /* tp_weaklistoffset */
-#if PY_VERSION_HEX >= 0x02020000
- 0, /* tp_iter */
- 0, /* tp_iternext */
- 0, /* tp_methods */
- 0, /* tp_members */
- 0, /* tp_getset */
- 0, /* tp_base */
- 0, /* tp_dict */
- 0, /* tp_descr_get */
- 0, /* tp_descr_set */
- 0, /* tp_dictoffset */
- 0, /* tp_init */
- 0, /* tp_alloc */
- 0, /* tp_new */
- 0, /* tp_free */
- 0, /* tp_is_gc */
- 0, /* tp_bases */
- 0, /* tp_mro */
- 0, /* tp_cache */
- 0, /* tp_subclasses */
- 0, /* tp_weaklist */
-#endif
-#if PY_VERSION_HEX >= 0x02030000
- 0, /* tp_del */
-#endif
-#if PY_VERSION_HEX >= 0x02060000
- 0, /* tp_version */
-#endif
-#ifdef COUNT_ALLOCS
- 0,0,0,0 /* tp_alloc -> tp_next */
-#endif
- };
- swigpypacked_type = tmp;
- type_init = 1;
-#if PY_VERSION_HEX < 0x02020000
- swigpypacked_type.ob_type = &PyType_Type;
-#else
- if (PyType_Ready(&swigpypacked_type) < 0)
- return NULL;
-#endif
- }
- return &swigpypacked_type;
-}
-
-SWIGRUNTIME PyObject *
-SwigPyPacked_New(void *ptr, size_t size, swig_type_info *ty)
-{
- SwigPyPacked *sobj = PyObject_NEW(SwigPyPacked, SwigPyPacked_type());
- if (sobj) {
- void *pack = malloc(size);
- if (pack) {
- memcpy(pack, ptr, size);
- sobj->pack = pack;
- sobj->ty = ty;
- sobj->size = size;
- } else {
- PyObject_DEL((PyObject *) sobj);
- sobj = 0;
- }
- }
- return (PyObject *) sobj;
-}
-
-SWIGRUNTIME swig_type_info *
-SwigPyPacked_UnpackData(PyObject *obj, void *ptr, size_t size)
-{
- if (SwigPyPacked_Check(obj)) {
- SwigPyPacked *sobj = (SwigPyPacked *)obj;
- if (sobj->size != size) return 0;
- memcpy(ptr, sobj->pack, size);
- return sobj->ty;
- } else {
- return 0;
- }
-}
-
-/* -----------------------------------------------------------------------------
- * pointers/data manipulation
- * ----------------------------------------------------------------------------- */
-
-SWIGRUNTIMEINLINE PyObject *
-_SWIG_This(void)
-{
- return SWIG_Python_str_FromChar("this");
-}
-
-static PyObject *swig_this = NULL;
-
-SWIGRUNTIME PyObject *
-SWIG_This(void)
-{
- if (swig_this == NULL)
- swig_this = _SWIG_This();
- return swig_this;
-}
-
-/* #define SWIG_PYTHON_SLOW_GETSET_THIS */
-
-/* TODO: I don't know how to implement the fast getset in Python 3 right now */
-#if PY_VERSION_HEX>=0x03000000
-#define SWIG_PYTHON_SLOW_GETSET_THIS
-#endif
-
-SWIGRUNTIME SwigPyObject *
-SWIG_Python_GetSwigThis(PyObject *pyobj)
-{
- PyObject *obj;
-
- if (SwigPyObject_Check(pyobj))
- return (SwigPyObject *) pyobj;
-
-#ifdef SWIGPYTHON_BUILTIN
- (void)obj;
-# ifdef PyWeakref_CheckProxy
- if (PyWeakref_CheckProxy(pyobj)) {
- pyobj = PyWeakref_GET_OBJECT(pyobj);
- if (pyobj && SwigPyObject_Check(pyobj))
- return (SwigPyObject*) pyobj;
- }
-# endif
- return NULL;
-#else
-
- obj = 0;
-
-#if (!defined(SWIG_PYTHON_SLOW_GETSET_THIS) && (PY_VERSION_HEX >= 0x02030000))
- if (PyInstance_Check(pyobj)) {
- obj = _PyInstance_Lookup(pyobj, SWIG_This());
- } else {
- PyObject **dictptr = _PyObject_GetDictPtr(pyobj);
- if (dictptr != NULL) {
- PyObject *dict = *dictptr;
- obj = dict ? PyDict_GetItem(dict, SWIG_This()) : 0;
- } else {
-#ifdef PyWeakref_CheckProxy
- if (PyWeakref_CheckProxy(pyobj)) {
- PyObject *wobj = PyWeakref_GET_OBJECT(pyobj);
- return wobj ? SWIG_Python_GetSwigThis(wobj) : 0;
- }
-#endif
- obj = PyObject_GetAttr(pyobj,SWIG_This());
- if (obj) {
- Py_DECREF(obj);
- } else {
- if (PyErr_Occurred()) PyErr_Clear();
- return 0;
- }
- }
- }
-#else
- obj = PyObject_GetAttr(pyobj,SWIG_This());
- if (obj) {
- Py_DECREF(obj);
- } else {
- if (PyErr_Occurred()) PyErr_Clear();
- return 0;
- }
-#endif
- if (obj && !SwigPyObject_Check(obj)) {
- /* a PyObject is called 'this', try to get the 'real this'
- SwigPyObject from it */
- return SWIG_Python_GetSwigThis(obj);
- }
- return (SwigPyObject *)obj;
-#endif
-}
-
-/* Acquire a pointer value */
-
-SWIGRUNTIME int
-SWIG_Python_AcquirePtr(PyObject *obj, int own) {
- if (own == SWIG_POINTER_OWN) {
- SwigPyObject *sobj = SWIG_Python_GetSwigThis(obj);
- if (sobj) {
- int oldown = sobj->own;
- sobj->own = own;
- return oldown;
- }
- }
- return 0;
-}
-
-/* Convert a pointer value */
-
-SWIGRUNTIME int
-SWIG_Python_ConvertPtrAndOwn(PyObject *obj, void **ptr, swig_type_info *ty, int flags, int *own) {
- int res;
- SwigPyObject *sobj;
-
- if (!obj)
- return SWIG_ERROR;
- if (obj == Py_None) {
- if (ptr)
- *ptr = 0;
- return SWIG_OK;
- }
-
- res = SWIG_ERROR;
-
- sobj = SWIG_Python_GetSwigThis(obj);
- if (own)
- *own = 0;
- while (sobj) {
- void *vptr = sobj->ptr;
- if (ty) {
- swig_type_info *to = sobj->ty;
- if (to == ty) {
- /* no type cast needed */
- if (ptr) *ptr = vptr;
- break;
- } else {
- swig_cast_info *tc = SWIG_TypeCheck(to->name,ty);
- if (!tc) {
- sobj = (SwigPyObject *)sobj->next;
- } else {
- if (ptr) {
- int newmemory = 0;
- *ptr = SWIG_TypeCast(tc,vptr,&newmemory);
- if (newmemory == SWIG_CAST_NEW_MEMORY) {
- assert(own); /* badly formed typemap which will lead to a memory leak - it must set and use own to delete *ptr */
- if (own)
- *own = *own | SWIG_CAST_NEW_MEMORY;
- }
- }
- break;
- }
- }
- } else {
- if (ptr) *ptr = vptr;
- break;
- }
- }
- if (sobj) {
- if (own)
- *own = *own | sobj->own;
- if (flags & SWIG_POINTER_DISOWN) {
- sobj->own = 0;
- }
- res = SWIG_OK;
- } else {
- if (flags & SWIG_POINTER_IMPLICIT_CONV) {
- SwigPyClientData *data = ty ? (SwigPyClientData *) ty->clientdata : 0;
- if (data && !data->implicitconv) {
- PyObject *klass = data->klass;
- if (klass) {
- PyObject *impconv;
- data->implicitconv = 1; /* avoid recursion and call 'explicit' constructors*/
- impconv = SWIG_Python_CallFunctor(klass, obj);
- data->implicitconv = 0;
- if (PyErr_Occurred()) {
- PyErr_Clear();
- impconv = 0;
- }
- if (impconv) {
- SwigPyObject *iobj = SWIG_Python_GetSwigThis(impconv);
- if (iobj) {
- void *vptr;
- res = SWIG_Python_ConvertPtrAndOwn((PyObject*)iobj, &vptr, ty, 0, 0);
- if (SWIG_IsOK(res)) {
- if (ptr) {
- *ptr = vptr;
- /* transfer the ownership to 'ptr' */
- iobj->own = 0;
- res = SWIG_AddCast(res);
- res = SWIG_AddNewMask(res);
- } else {
- res = SWIG_AddCast(res);
- }
- }
- }
- Py_DECREF(impconv);
- }
- }
- }
- }
- }
- return res;
-}
-
-/* Convert a function ptr value */
-
-SWIGRUNTIME int
-SWIG_Python_ConvertFunctionPtr(PyObject *obj, void **ptr, swig_type_info *ty) {
- if (!PyCFunction_Check(obj)) {
- return SWIG_ConvertPtr(obj, ptr, ty, 0);
- } else {
- void *vptr = 0;
-
- /* here we get the method pointer for callbacks */
- const char *doc = (((PyCFunctionObject *)obj) -> m_ml -> ml_doc);
- const char *desc = doc ? strstr(doc, "swig_ptr: ") : 0;
- if (desc)
- desc = ty ? SWIG_UnpackVoidPtr(desc + 10, &vptr, ty->name) : 0;
- if (!desc)
- return SWIG_ERROR;
- if (ty) {
- swig_cast_info *tc = SWIG_TypeCheck(desc,ty);
- if (tc) {
- int newmemory = 0;
- *ptr = SWIG_TypeCast(tc,vptr,&newmemory);
- assert(!newmemory); /* newmemory handling not yet implemented */
- } else {
- return SWIG_ERROR;
- }
- } else {
- *ptr = vptr;
- }
- return SWIG_OK;
- }
-}
-
-/* Convert a packed value value */
-
-SWIGRUNTIME int
-SWIG_Python_ConvertPacked(PyObject *obj, void *ptr, size_t sz, swig_type_info *ty) {
- swig_type_info *to = SwigPyPacked_UnpackData(obj, ptr, sz);
- if (!to) return SWIG_ERROR;
- if (ty) {
- if (to != ty) {
- /* check type cast? */
- swig_cast_info *tc = SWIG_TypeCheck(to->name,ty);
- if (!tc) return SWIG_ERROR;
- }
- }
- return SWIG_OK;
-}
-
-/* -----------------------------------------------------------------------------
- * Create a new pointer object
- * ----------------------------------------------------------------------------- */
-
-/*
- Create a new instance object, without calling __init__, and set the
- 'this' attribute.
-*/
-
-SWIGRUNTIME PyObject*
-SWIG_Python_NewShadowInstance(SwigPyClientData *data, PyObject *swig_this)
-{
-#if (PY_VERSION_HEX >= 0x02020000)
- PyObject *inst = 0;
- PyObject *newraw = data->newraw;
- if (newraw) {
- inst = PyObject_Call(newraw, data->newargs, NULL);
- if (inst) {
-#if !defined(SWIG_PYTHON_SLOW_GETSET_THIS)
- PyObject **dictptr = _PyObject_GetDictPtr(inst);
- if (dictptr != NULL) {
- PyObject *dict = *dictptr;
- if (dict == NULL) {
- dict = PyDict_New();
- *dictptr = dict;
- PyDict_SetItem(dict, SWIG_This(), swig_this);
- }
- }
-#else
- PyObject *key = SWIG_This();
- PyObject_SetAttr(inst, key, swig_this);
-#endif
- }
- } else {
-#if PY_VERSION_HEX >= 0x03000000
- inst = PyBaseObject_Type.tp_new((PyTypeObject*) data->newargs, Py_None, Py_None);
- PyObject_SetAttr(inst, SWIG_This(), swig_this);
- Py_TYPE(inst)->tp_flags &= ~Py_TPFLAGS_VALID_VERSION_TAG;
-#else
- PyObject *dict = PyDict_New();
- PyDict_SetItem(dict, SWIG_This(), swig_this);
- inst = PyInstance_NewRaw(data->newargs, dict);
- Py_DECREF(dict);
-#endif
- }
- return inst;
-#else
-#if (PY_VERSION_HEX >= 0x02010000)
- PyObject *inst;
- PyObject *dict = PyDict_New();
- PyDict_SetItem(dict, SWIG_This(), swig_this);
- inst = PyInstance_NewRaw(data->newargs, dict);
- Py_DECREF(dict);
- return (PyObject *) inst;
-#else
- PyInstanceObject *inst = PyObject_NEW(PyInstanceObject, &PyInstance_Type);
- if (inst == NULL) {
- return NULL;
- }
- inst->in_class = (PyClassObject *)data->newargs;
- Py_INCREF(inst->in_class);
- inst->in_dict = PyDict_New();
- if (inst->in_dict == NULL) {
- Py_DECREF(inst);
- return NULL;
- }
-#ifdef Py_TPFLAGS_HAVE_WEAKREFS
- inst->in_weakreflist = NULL;
-#endif
-#ifdef Py_TPFLAGS_GC
- PyObject_GC_Init(inst);
-#endif
- PyDict_SetItem(inst->in_dict, SWIG_This(), swig_this);
- return (PyObject *) inst;
-#endif
-#endif
-}
-
-SWIGRUNTIME void
-SWIG_Python_SetSwigThis(PyObject *inst, PyObject *swig_this)
-{
- PyObject *dict;
-#if (PY_VERSION_HEX >= 0x02020000) && !defined(SWIG_PYTHON_SLOW_GETSET_THIS)
- PyObject **dictptr = _PyObject_GetDictPtr(inst);
- if (dictptr != NULL) {
- dict = *dictptr;
- if (dict == NULL) {
- dict = PyDict_New();
- *dictptr = dict;
- }
- PyDict_SetItem(dict, SWIG_This(), swig_this);
- return;
- }
-#endif
- dict = PyObject_GetAttrString(inst, (char*)"__dict__");
- PyDict_SetItem(dict, SWIG_This(), swig_this);
- Py_DECREF(dict);
-}
-
-
-SWIGINTERN PyObject *
-SWIG_Python_InitShadowInstance(PyObject *args) {
- PyObject *obj[2];
- if (!SWIG_Python_UnpackTuple(args,(char*)"swiginit", 2, 2, obj)) {
- return NULL;
- } else {
- SwigPyObject *sthis = SWIG_Python_GetSwigThis(obj[0]);
- if (sthis) {
- SwigPyObject_append((PyObject*) sthis, obj[1]);
- } else {
- SWIG_Python_SetSwigThis(obj[0], obj[1]);
- }
- return SWIG_Py_Void();
- }
-}
-
-/* Create a new pointer object */
-
-SWIGRUNTIME PyObject *
-SWIG_Python_NewPointerObj(PyObject *self, void *ptr, swig_type_info *type, int flags) {
- SwigPyClientData *clientdata;
- PyObject * robj;
- int own;
-
- if (!ptr)
- return SWIG_Py_Void();
-
- clientdata = type ? (SwigPyClientData *)(type->clientdata) : 0;
- own = (flags & SWIG_POINTER_OWN) ? SWIG_POINTER_OWN : 0;
- if (clientdata && clientdata->pytype) {
- SwigPyObject *newobj;
- if (flags & SWIG_BUILTIN_TP_INIT) {
- newobj = (SwigPyObject*) self;
- if (newobj->ptr) {
- PyObject *next_self = clientdata->pytype->tp_alloc(clientdata->pytype, 0);
- while (newobj->next)
- newobj = (SwigPyObject *) newobj->next;
- newobj->next = next_self;
- newobj = (SwigPyObject *)next_self;
- }
- } else {
- newobj = PyObject_New(SwigPyObject, clientdata->pytype);
- }
- if (newobj) {
- newobj->ptr = ptr;
- newobj->ty = type;
- newobj->own = own;
- newobj->next = 0;
-#ifdef SWIGPYTHON_BUILTIN
- newobj->dict = 0;
-#endif
- return (PyObject*) newobj;
- }
- return SWIG_Py_Void();
- }
-
- assert(!(flags & SWIG_BUILTIN_TP_INIT));
-
- robj = SwigPyObject_New(ptr, type, own);
- if (clientdata && !(flags & SWIG_POINTER_NOSHADOW)) {
- PyObject *inst = SWIG_Python_NewShadowInstance(clientdata, robj);
- if (inst) {
- Py_DECREF(robj);
- robj = inst;
- }
- }
- return robj;
-}
-
-/* Create a new packed object */
-
-SWIGRUNTIMEINLINE PyObject *
-SWIG_Python_NewPackedObj(void *ptr, size_t sz, swig_type_info *type) {
- return ptr ? SwigPyPacked_New((void *) ptr, sz, type) : SWIG_Py_Void();
-}
-
-/* -----------------------------------------------------------------------------*
- * Get type list
- * -----------------------------------------------------------------------------*/
-
-#ifdef SWIG_LINK_RUNTIME
-void *SWIG_ReturnGlobalTypeList(void *);
-#endif
-
-SWIGRUNTIME swig_module_info *
-SWIG_Python_GetModule(void) {
- static void *type_pointer = (void *)0;
- /* first check if module already created */
- if (!type_pointer) {
-#ifdef SWIG_LINK_RUNTIME
- type_pointer = SWIG_ReturnGlobalTypeList((void *)0);
-#else
-# ifdef SWIGPY_USE_CAPSULE
- type_pointer = PyCapsule_Import(SWIGPY_CAPSULE_NAME, 0);
-# else
- type_pointer = PyCObject_Import((char*)"swig_runtime_data" SWIG_RUNTIME_VERSION,
- (char*)"type_pointer" SWIG_TYPE_TABLE_NAME);
-# endif
- if (PyErr_Occurred()) {
- PyErr_Clear();
- type_pointer = (void *)0;
- }
-#endif
- }
- return (swig_module_info *) type_pointer;
-}
-
-#if PY_MAJOR_VERSION < 2
-/* PyModule_AddObject function was introduced in Python 2.0. The following function
- is copied out of Python/modsupport.c in python version 2.3.4 */
-SWIGINTERN int
-PyModule_AddObject(PyObject *m, char *name, PyObject *o)
-{
- PyObject *dict;
- if (!PyModule_Check(m)) {
- PyErr_SetString(PyExc_TypeError,
- "PyModule_AddObject() needs module as first arg");
- return SWIG_ERROR;
- }
- if (!o) {
- PyErr_SetString(PyExc_TypeError,
- "PyModule_AddObject() needs non-NULL value");
- return SWIG_ERROR;
- }
-
- dict = PyModule_GetDict(m);
- if (dict == NULL) {
- /* Internal error -- modules must have a dict! */
- PyErr_Format(PyExc_SystemError, "module '%s' has no __dict__",
- PyModule_GetName(m));
- return SWIG_ERROR;
- }
- if (PyDict_SetItemString(dict, name, o))
- return SWIG_ERROR;
- Py_DECREF(o);
- return SWIG_OK;
-}
-#endif
-
-SWIGRUNTIME void
-#ifdef SWIGPY_USE_CAPSULE
-SWIG_Python_DestroyModule(PyObject *obj)
-#else
-SWIG_Python_DestroyModule(void *vptr)
-#endif
-{
-#ifdef SWIGPY_USE_CAPSULE
- swig_module_info *swig_module = (swig_module_info *) PyCapsule_GetPointer(obj, SWIGPY_CAPSULE_NAME);
-#else
- swig_module_info *swig_module = (swig_module_info *) vptr;
-#endif
- swig_type_info **types = swig_module->types;
- size_t i;
- for (i =0; i < swig_module->size; ++i) {
- swig_type_info *ty = types[i];
- if (ty->owndata) {
- SwigPyClientData *data = (SwigPyClientData *) ty->clientdata;
- if (data) SwigPyClientData_Del(data);
- }
- }
- Py_DECREF(SWIG_This());
- swig_this = NULL;
-}
-
-SWIGRUNTIME void
-SWIG_Python_SetModule(swig_module_info *swig_module) {
-#if PY_VERSION_HEX >= 0x03000000
- /* Add a dummy module object into sys.modules */
- PyObject *module = PyImport_AddModule((char*)"swig_runtime_data" SWIG_RUNTIME_VERSION);
-#else
- static PyMethodDef swig_empty_runtime_method_table[] = { {NULL, NULL, 0, NULL} }; /* Sentinel */
- PyObject *module = Py_InitModule((char*)"swig_runtime_data" SWIG_RUNTIME_VERSION, swig_empty_runtime_method_table);
-#endif
-#ifdef SWIGPY_USE_CAPSULE
- PyObject *pointer = PyCapsule_New((void *) swig_module, SWIGPY_CAPSULE_NAME, SWIG_Python_DestroyModule);
- if (pointer && module) {
- PyModule_AddObject(module, (char*)"type_pointer_capsule" SWIG_TYPE_TABLE_NAME, pointer);
- } else {
- Py_XDECREF(pointer);
- }
-#else
- PyObject *pointer = PyCObject_FromVoidPtr((void *) swig_module, SWIG_Python_DestroyModule);
- if (pointer && module) {
- PyModule_AddObject(module, (char*)"type_pointer" SWIG_TYPE_TABLE_NAME, pointer);
- } else {
- Py_XDECREF(pointer);
- }
-#endif
-}
-
-/* The python cached type query */
-SWIGRUNTIME PyObject *
-SWIG_Python_TypeCache(void) {
- static PyObject *SWIG_STATIC_POINTER(cache) = PyDict_New();
- return cache;
-}
-
-SWIGRUNTIME swig_type_info *
-SWIG_Python_TypeQuery(const char *type)
-{
- PyObject *cache = SWIG_Python_TypeCache();
- PyObject *key = SWIG_Python_str_FromChar(type);
- PyObject *obj = PyDict_GetItem(cache, key);
- swig_type_info *descriptor;
- if (obj) {
-#ifdef SWIGPY_USE_CAPSULE
- descriptor = (swig_type_info *) PyCapsule_GetPointer(obj, NULL);
-#else
- descriptor = (swig_type_info *) PyCObject_AsVoidPtr(obj);
-#endif
- } else {
- swig_module_info *swig_module = SWIG_Python_GetModule();
- descriptor = SWIG_TypeQueryModule(swig_module, swig_module, type);
- if (descriptor) {
-#ifdef SWIGPY_USE_CAPSULE
- obj = PyCapsule_New((void*) descriptor, NULL, NULL);
-#else
- obj = PyCObject_FromVoidPtr(descriptor, NULL);
-#endif
- PyDict_SetItem(cache, key, obj);
- Py_DECREF(obj);
- }
- }
- Py_DECREF(key);
- return descriptor;
-}
-
-/*
- For backward compatibility only
-*/
-#define SWIG_POINTER_EXCEPTION 0
-#define SWIG_arg_fail(arg) SWIG_Python_ArgFail(arg)
-#define SWIG_MustGetPtr(p, type, argnum, flags) SWIG_Python_MustGetPtr(p, type, argnum, flags)
-
-SWIGRUNTIME int
-SWIG_Python_AddErrMesg(const char* mesg, int infront)
-{
- if (PyErr_Occurred()) {
- PyObject *type = 0;
- PyObject *value = 0;
- PyObject *traceback = 0;
- PyErr_Fetch(&type, &value, &traceback);
- if (value) {
- char *tmp;
- PyObject *old_str = PyObject_Str(value);
- Py_XINCREF(type);
- PyErr_Clear();
- if (infront) {
- PyErr_Format(type, "%s %s", mesg, tmp = SWIG_Python_str_AsChar(old_str));
- } else {
- PyErr_Format(type, "%s %s", tmp = SWIG_Python_str_AsChar(old_str), mesg);
- }
- SWIG_Python_str_DelForPy3(tmp);
- Py_DECREF(old_str);
- }
- return 1;
- } else {
- return 0;
- }
-}
-
-SWIGRUNTIME int
-SWIG_Python_ArgFail(int argnum)
-{
- if (PyErr_Occurred()) {
- /* add information about failing argument */
- char mesg[256];
- PyOS_snprintf(mesg, sizeof(mesg), "argument number %d:", argnum);
- return SWIG_Python_AddErrMesg(mesg, 1);
- } else {
- return 0;
- }
-}
-
-SWIGRUNTIMEINLINE const char *
-SwigPyObject_GetDesc(PyObject *self)
-{
- SwigPyObject *v = (SwigPyObject *)self;
- swig_type_info *ty = v ? v->ty : 0;
- return ty ? ty->str : (char*)"";
-}
-
-SWIGRUNTIME void
-SWIG_Python_TypeError(const char *type, PyObject *obj)
-{
- if (type) {
-#if defined(SWIG_COBJECT_TYPES)
- if (obj && SwigPyObject_Check(obj)) {
- const char *otype = (const char *) SwigPyObject_GetDesc(obj);
- if (otype) {
- PyErr_Format(PyExc_TypeError, "a '%s' is expected, 'SwigPyObject(%s)' is received",
- type, otype);
- return;
- }
- } else
-#endif
- {
- const char *otype = (obj ? obj->ob_type->tp_name : 0);
- if (otype) {
- PyObject *str = PyObject_Str(obj);
- const char *cstr = str ? SWIG_Python_str_AsChar(str) : 0;
- if (cstr) {
- PyErr_Format(PyExc_TypeError, "a '%s' is expected, '%s(%s)' is received",
- type, otype, cstr);
- SWIG_Python_str_DelForPy3(cstr);
- } else {
- PyErr_Format(PyExc_TypeError, "a '%s' is expected, '%s' is received",
- type, otype);
- }
- Py_XDECREF(str);
- return;
- }
- }
- PyErr_Format(PyExc_TypeError, "a '%s' is expected", type);
- } else {
- PyErr_Format(PyExc_TypeError, "unexpected type is received");
- }
-}
-
-
-/* Convert a pointer value, signal an exception on a type mismatch */
-SWIGRUNTIME void *
-SWIG_Python_MustGetPtr(PyObject *obj, swig_type_info *ty, int SWIGUNUSEDPARM(argnum), int flags) {
- void *result;
- if (SWIG_Python_ConvertPtr(obj, &result, ty, flags) == -1) {
- PyErr_Clear();
-#if SWIG_POINTER_EXCEPTION
- if (flags) {
- SWIG_Python_TypeError(SWIG_TypePrettyName(ty), obj);
- SWIG_Python_ArgFail(argnum);
- }
-#endif
- }
- return result;
-}
-
-SWIGRUNTIME int
-SWIG_Python_NonDynamicSetAttr(PyObject *obj, PyObject *name, PyObject *value) {
- PyTypeObject *tp = obj->ob_type;
- PyObject *descr;
- PyObject *encoded_name;
- descrsetfunc f;
- int res;
-
-#ifdef Py_USING_UNICODE
- if (PyString_Check(name)) {
- name = PyUnicode_Decode(PyString_AsString(name), PyString_Size(name), NULL, NULL);
- if (!name)
- return -1;
- } else if (!PyUnicode_Check(name))
-#else
- if (!PyString_Check(name))
-#endif
- {
- PyErr_Format(PyExc_TypeError, "attribute name must be string, not '%.200s'", name->ob_type->tp_name);
- return -1;
- } else {
- Py_INCREF(name);
- }
-
- if (!tp->tp_dict) {
- if (PyType_Ready(tp) < 0)
- goto done;
- }
-
- res = -1;
- descr = _PyType_Lookup(tp, name);
- f = NULL;
- if (descr != NULL)
- f = descr->ob_type->tp_descr_set;
- if (!f) {
- if (PyString_Check(name)) {
- encoded_name = name;
- Py_INCREF(name);
- } else {
- encoded_name = PyUnicode_AsUTF8String(name);
- }
- PyErr_Format(PyExc_AttributeError, "'%.100s' object has no attribute '%.200s'", tp->tp_name, PyString_AsString(encoded_name));
- Py_DECREF(encoded_name);
- } else {
- res = f(descr, obj, value);
- }
-
- done:
- Py_DECREF(name);
- return res;
-}
-
-
-#ifdef __cplusplus
-}
-#endif
-
-
-
-#define SWIG_exception_fail(code, msg) do { SWIG_Error(code, msg); SWIG_fail; } while(0)
-
-#define SWIG_contract_assert(expr, msg) if (!(expr)) { SWIG_Error(SWIG_RuntimeError, msg); SWIG_fail; } else
-
-
-
- #define SWIG_exception(code, msg) do { SWIG_Error(code, msg); SWIG_fail;; } while(0)
-
-
-/* -------- TYPES TABLE (BEGIN) -------- */
-
-#define SWIGTYPE_p_AutoPyObjPtr swig_types[0]
-#define SWIGTYPE_p_char swig_types[1]
-#define SWIGTYPE_p_std__pairT_long_AutoPyObjPtr_t swig_types[2]
-#define SWIGTYPE_p_std__pairT_long_bool_t swig_types[3]
-#define SWIGTYPE_p_std__pairT_long_double_t swig_types[4]
-#define SWIGTYPE_p_std__pairT_long_int_t swig_types[5]
-#define SWIGTYPE_p_step_vectorT_AutoPyObjPtr_t__const_iterator swig_types[6]
-#define SWIGTYPE_p_step_vectorT_bool_t__const_iterator swig_types[7]
-#define SWIGTYPE_p_step_vectorT_double_t__const_iterator swig_types[8]
-#define SWIGTYPE_p_step_vectorT_int_t__const_iterator swig_types[9]
-#define SWIGTYPE_p_step_vector_for_pythonT_AutoPyObjPtr_t swig_types[10]
-#define SWIGTYPE_p_step_vector_for_pythonT_bool_t swig_types[11]
-#define SWIGTYPE_p_step_vector_for_pythonT_double_t swig_types[12]
-#define SWIGTYPE_p_step_vector_for_pythonT_int_t swig_types[13]
-#define SWIGTYPE_p_step_vector_pystyle_iteratorT_AutoPyObjPtr_t swig_types[14]
-#define SWIGTYPE_p_step_vector_pystyle_iteratorT_bool_t swig_types[15]
-#define SWIGTYPE_p_step_vector_pystyle_iteratorT_double_t swig_types[16]
-#define SWIGTYPE_p_step_vector_pystyle_iteratorT_int_t swig_types[17]
-static swig_type_info *swig_types[19];
-static swig_module_info swig_module = {swig_types, 18, 0, 0, 0, 0};
-#define SWIG_TypeQuery(name) SWIG_TypeQueryModule(&swig_module, &swig_module, name)
-#define SWIG_MangledTypeQuery(name) SWIG_MangledTypeQueryModule(&swig_module, &swig_module, name)
-
-/* -------- TYPES TABLE (END) -------- */
-
-#if (PY_VERSION_HEX <= 0x02000000)
-# if !defined(SWIG_PYTHON_CLASSIC)
-# error "This python version requires swig to be run with the '-classic' option"
-# endif
-#endif
-
-/*-----------------------------------------------
- @(target):= _StepVector.so
- ------------------------------------------------*/
-#if PY_VERSION_HEX >= 0x03000000
-# define SWIG_init PyInit__StepVector
-
-#else
-# define SWIG_init init_StepVector
-
-#endif
-#define SWIG_name "_StepVector"
-
-#define SWIGVERSION 0x020004
-#define SWIG_VERSION SWIGVERSION
-
-
-#define SWIG_as_voidptr(a) const_cast< void * >(static_cast< const void * >(a))
-#define SWIG_as_voidptrptr(a) ((void)SWIG_as_voidptr(*a),reinterpret_cast< void** >(a))
-
-
-#include <stdexcept>
-
-
-namespace swig {
- class SwigPtr_PyObject {
- protected:
- PyObject *_obj;
-
- public:
- SwigPtr_PyObject() :_obj(0)
- {
- }
-
- SwigPtr_PyObject(const SwigPtr_PyObject& item) : _obj(item._obj)
- {
- Py_XINCREF(_obj);
- }
-
- SwigPtr_PyObject(PyObject *obj, bool initial_ref = true) :_obj(obj)
- {
- if (initial_ref) {
- Py_XINCREF(_obj);
- }
- }
-
- SwigPtr_PyObject & operator=(const SwigPtr_PyObject& item)
- {
- Py_XINCREF(item._obj);
- Py_XDECREF(_obj);
- _obj = item._obj;
- return *this;
- }
-
- ~SwigPtr_PyObject()
- {
- Py_XDECREF(_obj);
- }
-
- operator PyObject *() const
- {
- return _obj;
- }
-
- PyObject *operator->() const
- {
- return _obj;
- }
- };
-}
-
-
-namespace swig {
- struct SwigVar_PyObject : SwigPtr_PyObject {
- SwigVar_PyObject(PyObject* obj = 0) : SwigPtr_PyObject(obj, false) { }
-
- SwigVar_PyObject & operator = (PyObject* obj)
- {
- Py_XDECREF(_obj);
- _obj = obj;
- return *this;
- }
- };
-}
-
- #define AUTOPYOBJPTR_EXTRAOPS
-
-
- struct AutoPyObjPtr {
- PyObject * obj;
- AutoPyObjPtr( PyObject * o = Py_None );
- AutoPyObjPtr( const AutoPyObjPtr & op );
- AutoPyObjPtr & operator= ( const AutoPyObjPtr & po );
- bool operator== ( const AutoPyObjPtr & po ) const;
- ~AutoPyObjPtr( );
- #ifdef AUTOPYOBJPTR_EXTRAOPS
- AutoPyObjPtr & operator+=( const AutoPyObjPtr & po );
- AutoPyObjPtr & operator+( const AutoPyObjPtr & po );
- #endif
- };
-
- AutoPyObjPtr::AutoPyObjPtr( PyObject * o )
- : obj( o )
- {
- Py_XINCREF( obj );
- }
-
- AutoPyObjPtr::AutoPyObjPtr( const AutoPyObjPtr & op )
- : obj( op.obj )
- {
- Py_XINCREF( obj );
- }
-
- AutoPyObjPtr & AutoPyObjPtr::operator= ( const AutoPyObjPtr & po )
- {
- Py_XDECREF( obj );
- obj = po.obj;
- Py_XINCREF( obj );
- return *this;
- }
-
- bool AutoPyObjPtr::operator== ( const AutoPyObjPtr & po ) const
- {
- int res = PyObject_RichCompareBool( obj, po.obj, Py_EQ );
- assert( res == 0 || res == 1 );
- return res;
- }
-
- AutoPyObjPtr::~AutoPyObjPtr( )
- {
- Py_XDECREF( obj );
- }
-
- #ifdef AUTOPYOBJPTR_EXTRAOPS
-
- class type_error_non_arith {};
-
- AutoPyObjPtr & AutoPyObjPtr::operator+= ( const AutoPyObjPtr & po )
- { throw type_error_non_arith(); }
-
- AutoPyObjPtr & AutoPyObjPtr::operator+ ( const AutoPyObjPtr & po )
- { throw type_error_non_arith(); }
-
- #endif
-
-
-
- #include "step_vector.h"
-
- class pystyle_stopiteration {};
-
- template< class T >
- class step_vector_pystyle_iterator
- {
- typename step_vector<T>::const_iterator current;
- typename step_vector<T>::const_iterator last;
- public:
- step_vector_pystyle_iterator( typename step_vector<T>::const_iterator first,
- typename step_vector<T>::const_iterator last_ );
- std::pair< long int, T > next( );
- step_vector_pystyle_iterator<T> * __iter__( );
- };
-
- template< class T >
- class step_vector_for_python : public step_vector<T>
- {
- public:
- step_vector_pystyle_iterator<T> get_all_values_pystyle( ) const;
- step_vector_pystyle_iterator<T> get_values_pystyle( long int from ) const;
- int num_values( ) const;
- };
-
- template< class T >
- step_vector_pystyle_iterator<T>::step_vector_pystyle_iterator(
- typename step_vector<T>::const_iterator first,
- typename step_vector<T>::const_iterator last_ )
- : current( first ), last( last_ )
- {
- }
-
- template< class T >
- step_vector_pystyle_iterator<T> step_vector_for_python<T>::get_all_values_pystyle( ) const
- {
- return step_vector_pystyle_iterator<T>( this->begin(), this->end() );
- }
-
- template< class T >
- step_vector_pystyle_iterator<T> step_vector_for_python<T>::get_values_pystyle( long int from ) const
- {
- return step_vector_pystyle_iterator<T>( this->get_values( from ), this->end() );
- }
-
- template< class T >
- int step_vector_for_python<T>::num_values( ) const
- {
- return this->m.size();
- }
-
- template< class T >
- std::pair< long int, T > step_vector_pystyle_iterator<T>::next( )
- {
- if( current == last )
- throw pystyle_stopiteration ();
- else {
- return *current++;
- }
- }
-
- template< class T >
- step_vector_pystyle_iterator<T> * step_vector_pystyle_iterator<T>::__iter__( )
- {
- return this;
- }
-
-
-
-SWIGINTERN int
-SWIG_AsVal_double (PyObject *obj, double *val)
-{
- int res = SWIG_TypeError;
- if (PyFloat_Check(obj)) {
- if (val) *val = PyFloat_AsDouble(obj);
- return SWIG_OK;
- } else if (PyInt_Check(obj)) {
- if (val) *val = PyInt_AsLong(obj);
- return SWIG_OK;
- } else if (PyLong_Check(obj)) {
- double v = PyLong_AsDouble(obj);
- if (!PyErr_Occurred()) {
- if (val) *val = v;
- return SWIG_OK;
- } else {
- PyErr_Clear();
- }
- }
-#ifdef SWIG_PYTHON_CAST_MODE
- {
- int dispatch = 0;
- double d = PyFloat_AsDouble(obj);
- if (!PyErr_Occurred()) {
- if (val) *val = d;
- return SWIG_AddCast(SWIG_OK);
- } else {
- PyErr_Clear();
- }
- if (!dispatch) {
- long v = PyLong_AsLong(obj);
- if (!PyErr_Occurred()) {
- if (val) *val = v;
- return SWIG_AddCast(SWIG_AddCast(SWIG_OK));
- } else {
- PyErr_Clear();
- }
- }
- }
-#endif
- return res;
-}
-
-
-#include <float.h>
-
-
-#include <math.h>
-
-
-SWIGINTERNINLINE int
-SWIG_CanCastAsInteger(double *d, double min, double max) {
- double x = *d;
- if ((min <= x && x <= max)) {
- double fx = floor(x);
- double cx = ceil(x);
- double rd = ((x - fx) < 0.5) ? fx : cx; /* simple rint */
- if ((errno == EDOM) || (errno == ERANGE)) {
- errno = 0;
- } else {
- double summ, reps, diff;
- if (rd < x) {
- diff = x - rd;
- } else if (rd > x) {
- diff = rd - x;
- } else {
- return 1;
- }
- summ = rd + x;
- reps = diff/summ;
- if (reps < 8*DBL_EPSILON) {
- *d = rd;
- return 1;
- }
- }
- }
- return 0;
-}
-
-
-SWIGINTERN int
-SWIG_AsVal_long (PyObject *obj, long* val)
-{
- if (PyInt_Check(obj)) {
- if (val) *val = PyInt_AsLong(obj);
- return SWIG_OK;
- } else if (PyLong_Check(obj)) {
- long v = PyLong_AsLong(obj);
- if (!PyErr_Occurred()) {
- if (val) *val = v;
- return SWIG_OK;
- } else {
- PyErr_Clear();
- }
- }
-#ifdef SWIG_PYTHON_CAST_MODE
- {
- int dispatch = 0;
- long v = PyInt_AsLong(obj);
- if (!PyErr_Occurred()) {
- if (val) *val = v;
- return SWIG_AddCast(SWIG_OK);
- } else {
- PyErr_Clear();
- }
- if (!dispatch) {
- double d;
- int res = SWIG_AddCast(SWIG_AsVal_double (obj,&d));
- if (SWIG_IsOK(res) && SWIG_CanCastAsInteger(&d, LONG_MIN, LONG_MAX)) {
- if (val) *val = (long)(d);
- return res;
- }
- }
- }
-#endif
- return SWIG_TypeError;
-}
-
-
- #define SWIG_From_long PyInt_FromLong
-
-
- #define SWIG_From_double PyFloat_FromDouble
-
-
-SWIGINTERNINLINE PyObject *
-SWIG_From_int (int value)
-{
- return SWIG_From_long (value);
-}
-
-
-#include <limits.h>
-#if !defined(SWIG_NO_LLONG_MAX)
-# if !defined(LLONG_MAX) && defined(__GNUC__) && defined (__LONG_LONG_MAX__)
-# define LLONG_MAX __LONG_LONG_MAX__
-# define LLONG_MIN (-LLONG_MAX - 1LL)
-# define ULLONG_MAX (LLONG_MAX * 2ULL + 1ULL)
-# endif
-#endif
-
-
-SWIGINTERN int
-SWIG_AsVal_int (PyObject * obj, int *val)
-{
- long v;
- int res = SWIG_AsVal_long (obj, &v);
- if (SWIG_IsOK(res)) {
- if ((v < INT_MIN || v > INT_MAX)) {
- return SWIG_OverflowError;
- } else {
- if (val) *val = static_cast< int >(v);
- }
- }
- return res;
-}
-
-
-SWIGINTERN int
-SWIG_AsVal_bool (PyObject *obj, bool *val)
-{
- int r = PyObject_IsTrue(obj);
- if (r == -1)
- return SWIG_ERROR;
- if (val) *val = r ? true : false;
- return SWIG_OK;
-}
-
-
-SWIGINTERNINLINE PyObject*
- SWIG_From_bool (bool value)
-{
- return PyBool_FromLong(value ? 1 : 0);
-}
-
-#ifdef __cplusplus
-extern "C" {
-#endif
-SWIGINTERN PyObject *_wrap__Pair_int_float_first_set(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- std::pair< long,double > *arg1 = (std::pair< long,double > *) 0 ;
- long arg2 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- long val2 ;
- int ecode2 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"OO:_Pair_int_float_first_set",&obj0,&obj1)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_std__pairT_long_double_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_Pair_int_float_first_set" "', argument " "1"" of type '" "std::pair< long,double > *""'");
- }
- arg1 = reinterpret_cast< std::pair< long,double > * >(argp1);
- ecode2 = SWIG_AsVal_long(obj1, &val2);
- if (!SWIG_IsOK(ecode2)) {
- SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "_Pair_int_float_first_set" "', argument " "2"" of type '" "long""'");
- }
- arg2 = static_cast< long >(val2);
- if (arg1) (arg1)->first = arg2;
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__Pair_int_float_first_get(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- std::pair< long,double > *arg1 = (std::pair< long,double > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
- long result;
-
- if (!PyArg_ParseTuple(args,(char *)"O:_Pair_int_float_first_get",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_std__pairT_long_double_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_Pair_int_float_first_get" "', argument " "1"" of type '" "std::pair< long,double > *""'");
- }
- arg1 = reinterpret_cast< std::pair< long,double > * >(argp1);
- result = (long) ((arg1)->first);
- resultobj = SWIG_From_long(static_cast< long >(result));
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__Pair_int_float_second_set(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- std::pair< long,double > *arg1 = (std::pair< long,double > *) 0 ;
- double arg2 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- double val2 ;
- int ecode2 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"OO:_Pair_int_float_second_set",&obj0,&obj1)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_std__pairT_long_double_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_Pair_int_float_second_set" "', argument " "1"" of type '" "std::pair< long,double > *""'");
- }
- arg1 = reinterpret_cast< std::pair< long,double > * >(argp1);
- ecode2 = SWIG_AsVal_double(obj1, &val2);
- if (!SWIG_IsOK(ecode2)) {
- SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "_Pair_int_float_second_set" "', argument " "2"" of type '" "double""'");
- }
- arg2 = static_cast< double >(val2);
- if (arg1) (arg1)->second = arg2;
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__Pair_int_float_second_get(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- std::pair< long,double > *arg1 = (std::pair< long,double > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
- double result;
-
- if (!PyArg_ParseTuple(args,(char *)"O:_Pair_int_float_second_get",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_std__pairT_long_double_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_Pair_int_float_second_get" "', argument " "1"" of type '" "std::pair< long,double > *""'");
- }
- arg1 = reinterpret_cast< std::pair< long,double > * >(argp1);
- result = (double) ((arg1)->second);
- resultobj = SWIG_From_double(static_cast< double >(result));
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap_new__Pair_int_float(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- long arg1 ;
- double arg2 ;
- long val1 ;
- int ecode1 = 0 ;
- double val2 ;
- int ecode2 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
- std::pair< long,double > *result = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"OO:new__Pair_int_float",&obj0,&obj1)) SWIG_fail;
- ecode1 = SWIG_AsVal_long(obj0, &val1);
- if (!SWIG_IsOK(ecode1)) {
- SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "new__Pair_int_float" "', argument " "1"" of type '" "long""'");
- }
- arg1 = static_cast< long >(val1);
- ecode2 = SWIG_AsVal_double(obj1, &val2);
- if (!SWIG_IsOK(ecode2)) {
- SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "new__Pair_int_float" "', argument " "2"" of type '" "double""'");
- }
- arg2 = static_cast< double >(val2);
- result = (std::pair< long,double > *)new std::pair< long,double >(arg1,arg2);
- resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_std__pairT_long_double_t, SWIG_POINTER_NEW | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap_delete__Pair_int_float(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- std::pair< long,double > *arg1 = (std::pair< long,double > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"O:delete__Pair_int_float",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_std__pairT_long_double_t, SWIG_POINTER_DISOWN | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "delete__Pair_int_float" "', argument " "1"" of type '" "std::pair< long,double > *""'");
- }
- arg1 = reinterpret_cast< std::pair< long,double > * >(argp1);
- delete arg1;
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_Pair_int_float_swigregister(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *obj;
- if (!PyArg_ParseTuple(args,(char*)"O:swigregister", &obj)) return NULL;
- SWIG_TypeNewClientData(SWIGTYPE_p_std__pairT_long_double_t, SWIG_NewClientData(obj));
- return SWIG_Py_Void();
-}
-
-SWIGINTERN PyObject *_wrap_new__StepVector_Iterator_float(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector< double >::const_iterator arg1 ;
- step_vector< double >::const_iterator arg2 ;
- void *argp1 ;
- int res1 = 0 ;
- void *argp2 ;
- int res2 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
- step_vector_pystyle_iterator< double > *result = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"OO:new__StepVector_Iterator_float",&obj0,&obj1)) SWIG_fail;
- {
- res1 = SWIG_ConvertPtr(obj0, &argp1, SWIGTYPE_p_step_vectorT_double_t__const_iterator, 0 | 0);
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "new__StepVector_Iterator_float" "', argument " "1"" of type '" "step_vector< double >::const_iterator""'");
- }
- if (!argp1) {
- SWIG_exception_fail(SWIG_ValueError, "invalid null reference " "in method '" "new__StepVector_Iterator_float" "', argument " "1"" of type '" "step_vector< double >::const_iterator""'");
- } else {
- step_vector< double >::const_iterator * temp = reinterpret_cast< step_vector< double >::const_iterator * >(argp1);
- arg1 = *temp;
- if (SWIG_IsNewObj(res1)) delete temp;
- }
- }
- {
- res2 = SWIG_ConvertPtr(obj1, &argp2, SWIGTYPE_p_step_vectorT_double_t__const_iterator, 0 | 0);
- if (!SWIG_IsOK(res2)) {
- SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "new__StepVector_Iterator_float" "', argument " "2"" of type '" "step_vector< double >::const_iterator""'");
- }
- if (!argp2) {
- SWIG_exception_fail(SWIG_ValueError, "invalid null reference " "in method '" "new__StepVector_Iterator_float" "', argument " "2"" of type '" "step_vector< double >::const_iterator""'");
- } else {
- step_vector< double >::const_iterator * temp = reinterpret_cast< step_vector< double >::const_iterator * >(argp2);
- arg2 = *temp;
- if (SWIG_IsNewObj(res2)) delete temp;
- }
- }
- result = (step_vector_pystyle_iterator< double > *)new step_vector_pystyle_iterator< double >(arg1,arg2);
- resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_step_vector_pystyle_iteratorT_double_t, SWIG_POINTER_NEW | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_Iterator_float_next(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_pystyle_iterator< double > *arg1 = (step_vector_pystyle_iterator< double > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
- SwigValueWrapper< std::pair< long,double > > result;
-
- if (!PyArg_ParseTuple(args,(char *)"O:_StepVector_Iterator_float_next",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_pystyle_iteratorT_double_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_Iterator_float_next" "', argument " "1"" of type '" "step_vector_pystyle_iterator< double > *""'");
- }
- arg1 = reinterpret_cast< step_vector_pystyle_iterator< double > * >(argp1);
- {
- try {
- result = (arg1)->next();
- } catch (pystyle_stopiteration &e) {
- PyErr_SetString( PyExc_StopIteration, "" );
- return NULL;
- }
- }
- resultobj = SWIG_NewPointerObj((new std::pair< long,double >(static_cast< const std::pair< long,double >& >(result))), SWIGTYPE_p_std__pairT_long_double_t, SWIG_POINTER_OWN | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_Iterator_float___iter__(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_pystyle_iterator< double > *arg1 = (step_vector_pystyle_iterator< double > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
- step_vector_pystyle_iterator< double > *result = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"O:_StepVector_Iterator_float___iter__",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_pystyle_iteratorT_double_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_Iterator_float___iter__" "', argument " "1"" of type '" "step_vector_pystyle_iterator< double > *""'");
- }
- arg1 = reinterpret_cast< step_vector_pystyle_iterator< double > * >(argp1);
- result = (step_vector_pystyle_iterator< double > *)(arg1)->__iter__();
- resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_step_vector_pystyle_iteratorT_double_t, 0 | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap_delete__StepVector_Iterator_float(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_pystyle_iterator< double > *arg1 = (step_vector_pystyle_iterator< double > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"O:delete__StepVector_Iterator_float",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_pystyle_iteratorT_double_t, SWIG_POINTER_DISOWN | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "delete__StepVector_Iterator_float" "', argument " "1"" of type '" "step_vector_pystyle_iterator< double > *""'");
- }
- arg1 = reinterpret_cast< step_vector_pystyle_iterator< double > * >(argp1);
- delete arg1;
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_StepVector_Iterator_float_swigregister(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *obj;
- if (!PyArg_ParseTuple(args,(char*)"O:swigregister", &obj)) return NULL;
- SWIG_TypeNewClientData(SWIGTYPE_p_step_vector_pystyle_iteratorT_double_t, SWIG_NewClientData(obj));
- return SWIG_Py_Void();
-}
-
-SWIGINTERN int Swig_var__StepVector_float_min_index_set(PyObject *) {
- SWIG_Error(SWIG_AttributeError,"Variable _StepVector_float_min_index is read-only.");
- return 1;
-}
-
-
-SWIGINTERN PyObject *Swig_var__StepVector_float_min_index_get(void) {
- PyObject *pyobj = 0;
-
- pyobj = SWIG_From_long(static_cast< long >(step_vector_for_python< double >::min_index));
- return pyobj;
-}
-
-
-SWIGINTERN int Swig_var__StepVector_float_max_index_set(PyObject *) {
- SWIG_Error(SWIG_AttributeError,"Variable _StepVector_float_max_index is read-only.");
- return 1;
-}
-
-
-SWIGINTERN PyObject *Swig_var__StepVector_float_max_index_get(void) {
- PyObject *pyobj = 0;
-
- pyobj = SWIG_From_long(static_cast< long >(step_vector_for_python< double >::max_index));
- return pyobj;
-}
-
-
-SWIGINTERN PyObject *_wrap_new__StepVector_float(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< double > *result = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)":new__StepVector_float")) SWIG_fail;
- result = (step_vector_for_python< double > *)new step_vector_for_python< double >();
- resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_step_vector_for_pythonT_double_t, SWIG_POINTER_NEW | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_float_set_value(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< double > *arg1 = (step_vector_for_python< double > *) 0 ;
- long arg2 ;
- long arg3 ;
- double arg4 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- long val2 ;
- int ecode2 = 0 ;
- long val3 ;
- int ecode3 = 0 ;
- double val4 ;
- int ecode4 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
- PyObject * obj2 = 0 ;
- PyObject * obj3 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"OOOO:_StepVector_float_set_value",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_for_pythonT_double_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_float_set_value" "', argument " "1"" of type '" "step_vector_for_python< double > *""'");
- }
- arg1 = reinterpret_cast< step_vector_for_python< double > * >(argp1);
- ecode2 = SWIG_AsVal_long(obj1, &val2);
- if (!SWIG_IsOK(ecode2)) {
- SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "_StepVector_float_set_value" "', argument " "2"" of type '" "long""'");
- }
- arg2 = static_cast< long >(val2);
- ecode3 = SWIG_AsVal_long(obj2, &val3);
- if (!SWIG_IsOK(ecode3)) {
- SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "_StepVector_float_set_value" "', argument " "3"" of type '" "long""'");
- }
- arg3 = static_cast< long >(val3);
- ecode4 = SWIG_AsVal_double(obj3, &val4);
- if (!SWIG_IsOK(ecode4)) {
- SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "_StepVector_float_set_value" "', argument " "4"" of type '" "double""'");
- }
- arg4 = static_cast< double >(val4);
- {
- try {
- (arg1)->set_value(arg2,arg3,arg4);
- } catch (std::out_of_range &e) {
- SWIG_exception(SWIG_IndexError, e.what() );
- } catch (type_error_non_arith &e) {
- SWIG_exception(SWIG_TypeError, "Illegal arithmetic operation" );
- }
- }
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_float_add_value(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< double > *arg1 = (step_vector_for_python< double > *) 0 ;
- long arg2 ;
- long arg3 ;
- double arg4 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- long val2 ;
- int ecode2 = 0 ;
- long val3 ;
- int ecode3 = 0 ;
- double val4 ;
- int ecode4 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
- PyObject * obj2 = 0 ;
- PyObject * obj3 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"OOOO:_StepVector_float_add_value",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_for_pythonT_double_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_float_add_value" "', argument " "1"" of type '" "step_vector_for_python< double > *""'");
- }
- arg1 = reinterpret_cast< step_vector_for_python< double > * >(argp1);
- ecode2 = SWIG_AsVal_long(obj1, &val2);
- if (!SWIG_IsOK(ecode2)) {
- SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "_StepVector_float_add_value" "', argument " "2"" of type '" "long""'");
- }
- arg2 = static_cast< long >(val2);
- ecode3 = SWIG_AsVal_long(obj2, &val3);
- if (!SWIG_IsOK(ecode3)) {
- SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "_StepVector_float_add_value" "', argument " "3"" of type '" "long""'");
- }
- arg3 = static_cast< long >(val3);
- ecode4 = SWIG_AsVal_double(obj3, &val4);
- if (!SWIG_IsOK(ecode4)) {
- SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "_StepVector_float_add_value" "', argument " "4"" of type '" "double""'");
- }
- arg4 = static_cast< double >(val4);
- {
- try {
- (arg1)->add_value(arg2,arg3,arg4);
- } catch (std::out_of_range &e) {
- SWIG_exception(SWIG_IndexError, e.what() );
- } catch (type_error_non_arith &e) {
- SWIG_exception(SWIG_TypeError, "Illegal arithmetic operation" );
- }
- }
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_float_get_all_values_pystyle(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< double > *arg1 = (step_vector_for_python< double > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
- SwigValueWrapper< step_vector_pystyle_iterator< double > > result;
-
- if (!PyArg_ParseTuple(args,(char *)"O:_StepVector_float_get_all_values_pystyle",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_for_pythonT_double_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_float_get_all_values_pystyle" "', argument " "1"" of type '" "step_vector_for_python< double > const *""'");
- }
- arg1 = reinterpret_cast< step_vector_for_python< double > * >(argp1);
- result = ((step_vector_for_python< double > const *)arg1)->get_all_values_pystyle();
- resultobj = SWIG_NewPointerObj((new step_vector_pystyle_iterator< double >(static_cast< const step_vector_pystyle_iterator< double >& >(result))), SWIGTYPE_p_step_vector_pystyle_iteratorT_double_t, SWIG_POINTER_OWN | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_float_get_values_pystyle(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< double > *arg1 = (step_vector_for_python< double > *) 0 ;
- long arg2 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- long val2 ;
- int ecode2 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
- SwigValueWrapper< step_vector_pystyle_iterator< double > > result;
-
- if (!PyArg_ParseTuple(args,(char *)"OO:_StepVector_float_get_values_pystyle",&obj0,&obj1)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_for_pythonT_double_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_float_get_values_pystyle" "', argument " "1"" of type '" "step_vector_for_python< double > const *""'");
- }
- arg1 = reinterpret_cast< step_vector_for_python< double > * >(argp1);
- ecode2 = SWIG_AsVal_long(obj1, &val2);
- if (!SWIG_IsOK(ecode2)) {
- SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "_StepVector_float_get_values_pystyle" "', argument " "2"" of type '" "long""'");
- }
- arg2 = static_cast< long >(val2);
- result = ((step_vector_for_python< double > const *)arg1)->get_values_pystyle(arg2);
- resultobj = SWIG_NewPointerObj((new step_vector_pystyle_iterator< double >(static_cast< const step_vector_pystyle_iterator< double >& >(result))), SWIGTYPE_p_step_vector_pystyle_iteratorT_double_t, SWIG_POINTER_OWN | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_float_num_values(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< double > *arg1 = (step_vector_for_python< double > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
- int result;
-
- if (!PyArg_ParseTuple(args,(char *)"O:_StepVector_float_num_values",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_for_pythonT_double_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_float_num_values" "', argument " "1"" of type '" "step_vector_for_python< double > const *""'");
- }
- arg1 = reinterpret_cast< step_vector_for_python< double > * >(argp1);
- result = (int)((step_vector_for_python< double > const *)arg1)->num_values();
- resultobj = SWIG_From_int(static_cast< int >(result));
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap_delete__StepVector_float(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< double > *arg1 = (step_vector_for_python< double > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"O:delete__StepVector_float",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_for_pythonT_double_t, SWIG_POINTER_DISOWN | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "delete__StepVector_float" "', argument " "1"" of type '" "step_vector_for_python< double > *""'");
- }
- arg1 = reinterpret_cast< step_vector_for_python< double > * >(argp1);
- delete arg1;
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_StepVector_float_swigregister(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *obj;
- if (!PyArg_ParseTuple(args,(char*)"O:swigregister", &obj)) return NULL;
- SWIG_TypeNewClientData(SWIGTYPE_p_step_vector_for_pythonT_double_t, SWIG_NewClientData(obj));
- return SWIG_Py_Void();
-}
-
-SWIGINTERN PyObject *_wrap__Pair_int_int_first_set(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- std::pair< long,int > *arg1 = (std::pair< long,int > *) 0 ;
- long arg2 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- long val2 ;
- int ecode2 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"OO:_Pair_int_int_first_set",&obj0,&obj1)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_std__pairT_long_int_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_Pair_int_int_first_set" "', argument " "1"" of type '" "std::pair< long,int > *""'");
- }
- arg1 = reinterpret_cast< std::pair< long,int > * >(argp1);
- ecode2 = SWIG_AsVal_long(obj1, &val2);
- if (!SWIG_IsOK(ecode2)) {
- SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "_Pair_int_int_first_set" "', argument " "2"" of type '" "long""'");
- }
- arg2 = static_cast< long >(val2);
- if (arg1) (arg1)->first = arg2;
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__Pair_int_int_first_get(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- std::pair< long,int > *arg1 = (std::pair< long,int > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
- long result;
-
- if (!PyArg_ParseTuple(args,(char *)"O:_Pair_int_int_first_get",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_std__pairT_long_int_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_Pair_int_int_first_get" "', argument " "1"" of type '" "std::pair< long,int > *""'");
- }
- arg1 = reinterpret_cast< std::pair< long,int > * >(argp1);
- result = (long) ((arg1)->first);
- resultobj = SWIG_From_long(static_cast< long >(result));
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__Pair_int_int_second_set(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- std::pair< long,int > *arg1 = (std::pair< long,int > *) 0 ;
- int arg2 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- int val2 ;
- int ecode2 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"OO:_Pair_int_int_second_set",&obj0,&obj1)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_std__pairT_long_int_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_Pair_int_int_second_set" "', argument " "1"" of type '" "std::pair< long,int > *""'");
- }
- arg1 = reinterpret_cast< std::pair< long,int > * >(argp1);
- ecode2 = SWIG_AsVal_int(obj1, &val2);
- if (!SWIG_IsOK(ecode2)) {
- SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "_Pair_int_int_second_set" "', argument " "2"" of type '" "int""'");
- }
- arg2 = static_cast< int >(val2);
- if (arg1) (arg1)->second = arg2;
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__Pair_int_int_second_get(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- std::pair< long,int > *arg1 = (std::pair< long,int > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
- int result;
-
- if (!PyArg_ParseTuple(args,(char *)"O:_Pair_int_int_second_get",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_std__pairT_long_int_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_Pair_int_int_second_get" "', argument " "1"" of type '" "std::pair< long,int > *""'");
- }
- arg1 = reinterpret_cast< std::pair< long,int > * >(argp1);
- result = (int) ((arg1)->second);
- resultobj = SWIG_From_int(static_cast< int >(result));
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap_new__Pair_int_int(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- long arg1 ;
- int arg2 ;
- long val1 ;
- int ecode1 = 0 ;
- int val2 ;
- int ecode2 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
- std::pair< long,int > *result = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"OO:new__Pair_int_int",&obj0,&obj1)) SWIG_fail;
- ecode1 = SWIG_AsVal_long(obj0, &val1);
- if (!SWIG_IsOK(ecode1)) {
- SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "new__Pair_int_int" "', argument " "1"" of type '" "long""'");
- }
- arg1 = static_cast< long >(val1);
- ecode2 = SWIG_AsVal_int(obj1, &val2);
- if (!SWIG_IsOK(ecode2)) {
- SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "new__Pair_int_int" "', argument " "2"" of type '" "int""'");
- }
- arg2 = static_cast< int >(val2);
- result = (std::pair< long,int > *)new std::pair< long,int >(arg1,arg2);
- resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_std__pairT_long_int_t, SWIG_POINTER_NEW | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap_delete__Pair_int_int(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- std::pair< long,int > *arg1 = (std::pair< long,int > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"O:delete__Pair_int_int",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_std__pairT_long_int_t, SWIG_POINTER_DISOWN | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "delete__Pair_int_int" "', argument " "1"" of type '" "std::pair< long,int > *""'");
- }
- arg1 = reinterpret_cast< std::pair< long,int > * >(argp1);
- delete arg1;
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_Pair_int_int_swigregister(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *obj;
- if (!PyArg_ParseTuple(args,(char*)"O:swigregister", &obj)) return NULL;
- SWIG_TypeNewClientData(SWIGTYPE_p_std__pairT_long_int_t, SWIG_NewClientData(obj));
- return SWIG_Py_Void();
-}
-
-SWIGINTERN PyObject *_wrap_new__StepVector_Iterator_int(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector< int >::const_iterator arg1 ;
- step_vector< int >::const_iterator arg2 ;
- void *argp1 ;
- int res1 = 0 ;
- void *argp2 ;
- int res2 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
- step_vector_pystyle_iterator< int > *result = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"OO:new__StepVector_Iterator_int",&obj0,&obj1)) SWIG_fail;
- {
- res1 = SWIG_ConvertPtr(obj0, &argp1, SWIGTYPE_p_step_vectorT_int_t__const_iterator, 0 | 0);
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "new__StepVector_Iterator_int" "', argument " "1"" of type '" "step_vector< int >::const_iterator""'");
- }
- if (!argp1) {
- SWIG_exception_fail(SWIG_ValueError, "invalid null reference " "in method '" "new__StepVector_Iterator_int" "', argument " "1"" of type '" "step_vector< int >::const_iterator""'");
- } else {
- step_vector< int >::const_iterator * temp = reinterpret_cast< step_vector< int >::const_iterator * >(argp1);
- arg1 = *temp;
- if (SWIG_IsNewObj(res1)) delete temp;
- }
- }
- {
- res2 = SWIG_ConvertPtr(obj1, &argp2, SWIGTYPE_p_step_vectorT_int_t__const_iterator, 0 | 0);
- if (!SWIG_IsOK(res2)) {
- SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "new__StepVector_Iterator_int" "', argument " "2"" of type '" "step_vector< int >::const_iterator""'");
- }
- if (!argp2) {
- SWIG_exception_fail(SWIG_ValueError, "invalid null reference " "in method '" "new__StepVector_Iterator_int" "', argument " "2"" of type '" "step_vector< int >::const_iterator""'");
- } else {
- step_vector< int >::const_iterator * temp = reinterpret_cast< step_vector< int >::const_iterator * >(argp2);
- arg2 = *temp;
- if (SWIG_IsNewObj(res2)) delete temp;
- }
- }
- result = (step_vector_pystyle_iterator< int > *)new step_vector_pystyle_iterator< int >(arg1,arg2);
- resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_step_vector_pystyle_iteratorT_int_t, SWIG_POINTER_NEW | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_Iterator_int_next(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_pystyle_iterator< int > *arg1 = (step_vector_pystyle_iterator< int > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
- SwigValueWrapper< std::pair< long,int > > result;
-
- if (!PyArg_ParseTuple(args,(char *)"O:_StepVector_Iterator_int_next",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_pystyle_iteratorT_int_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_Iterator_int_next" "', argument " "1"" of type '" "step_vector_pystyle_iterator< int > *""'");
- }
- arg1 = reinterpret_cast< step_vector_pystyle_iterator< int > * >(argp1);
- {
- try {
- result = (arg1)->next();
- } catch (pystyle_stopiteration &e) {
- PyErr_SetString( PyExc_StopIteration, "" );
- return NULL;
- }
- }
- resultobj = SWIG_NewPointerObj((new std::pair< long,int >(static_cast< const std::pair< long,int >& >(result))), SWIGTYPE_p_std__pairT_long_int_t, SWIG_POINTER_OWN | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_Iterator_int___iter__(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_pystyle_iterator< int > *arg1 = (step_vector_pystyle_iterator< int > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
- step_vector_pystyle_iterator< int > *result = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"O:_StepVector_Iterator_int___iter__",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_pystyle_iteratorT_int_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_Iterator_int___iter__" "', argument " "1"" of type '" "step_vector_pystyle_iterator< int > *""'");
- }
- arg1 = reinterpret_cast< step_vector_pystyle_iterator< int > * >(argp1);
- result = (step_vector_pystyle_iterator< int > *)(arg1)->__iter__();
- resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_step_vector_pystyle_iteratorT_int_t, 0 | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap_delete__StepVector_Iterator_int(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_pystyle_iterator< int > *arg1 = (step_vector_pystyle_iterator< int > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"O:delete__StepVector_Iterator_int",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_pystyle_iteratorT_int_t, SWIG_POINTER_DISOWN | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "delete__StepVector_Iterator_int" "', argument " "1"" of type '" "step_vector_pystyle_iterator< int > *""'");
- }
- arg1 = reinterpret_cast< step_vector_pystyle_iterator< int > * >(argp1);
- delete arg1;
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_StepVector_Iterator_int_swigregister(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *obj;
- if (!PyArg_ParseTuple(args,(char*)"O:swigregister", &obj)) return NULL;
- SWIG_TypeNewClientData(SWIGTYPE_p_step_vector_pystyle_iteratorT_int_t, SWIG_NewClientData(obj));
- return SWIG_Py_Void();
-}
-
-SWIGINTERN int Swig_var__StepVector_int_min_index_set(PyObject *) {
- SWIG_Error(SWIG_AttributeError,"Variable _StepVector_int_min_index is read-only.");
- return 1;
-}
-
-
-SWIGINTERN PyObject *Swig_var__StepVector_int_min_index_get(void) {
- PyObject *pyobj = 0;
-
- pyobj = SWIG_From_long(static_cast< long >(step_vector_for_python< int >::min_index));
- return pyobj;
-}
-
-
-SWIGINTERN int Swig_var__StepVector_int_max_index_set(PyObject *) {
- SWIG_Error(SWIG_AttributeError,"Variable _StepVector_int_max_index is read-only.");
- return 1;
-}
-
-
-SWIGINTERN PyObject *Swig_var__StepVector_int_max_index_get(void) {
- PyObject *pyobj = 0;
-
- pyobj = SWIG_From_long(static_cast< long >(step_vector_for_python< int >::max_index));
- return pyobj;
-}
-
-
-SWIGINTERN PyObject *_wrap_new__StepVector_int(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< int > *result = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)":new__StepVector_int")) SWIG_fail;
- result = (step_vector_for_python< int > *)new step_vector_for_python< int >();
- resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_step_vector_for_pythonT_int_t, SWIG_POINTER_NEW | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_int_set_value(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< int > *arg1 = (step_vector_for_python< int > *) 0 ;
- long arg2 ;
- long arg3 ;
- int arg4 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- long val2 ;
- int ecode2 = 0 ;
- long val3 ;
- int ecode3 = 0 ;
- int val4 ;
- int ecode4 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
- PyObject * obj2 = 0 ;
- PyObject * obj3 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"OOOO:_StepVector_int_set_value",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_for_pythonT_int_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_int_set_value" "', argument " "1"" of type '" "step_vector_for_python< int > *""'");
- }
- arg1 = reinterpret_cast< step_vector_for_python< int > * >(argp1);
- ecode2 = SWIG_AsVal_long(obj1, &val2);
- if (!SWIG_IsOK(ecode2)) {
- SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "_StepVector_int_set_value" "', argument " "2"" of type '" "long""'");
- }
- arg2 = static_cast< long >(val2);
- ecode3 = SWIG_AsVal_long(obj2, &val3);
- if (!SWIG_IsOK(ecode3)) {
- SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "_StepVector_int_set_value" "', argument " "3"" of type '" "long""'");
- }
- arg3 = static_cast< long >(val3);
- ecode4 = SWIG_AsVal_int(obj3, &val4);
- if (!SWIG_IsOK(ecode4)) {
- SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "_StepVector_int_set_value" "', argument " "4"" of type '" "int""'");
- }
- arg4 = static_cast< int >(val4);
- {
- try {
- (arg1)->set_value(arg2,arg3,arg4);
- } catch (std::out_of_range &e) {
- SWIG_exception(SWIG_IndexError, e.what() );
- } catch (type_error_non_arith &e) {
- SWIG_exception(SWIG_TypeError, "Illegal arithmetic operation" );
- }
- }
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_int_add_value(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< int > *arg1 = (step_vector_for_python< int > *) 0 ;
- long arg2 ;
- long arg3 ;
- int arg4 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- long val2 ;
- int ecode2 = 0 ;
- long val3 ;
- int ecode3 = 0 ;
- int val4 ;
- int ecode4 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
- PyObject * obj2 = 0 ;
- PyObject * obj3 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"OOOO:_StepVector_int_add_value",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_for_pythonT_int_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_int_add_value" "', argument " "1"" of type '" "step_vector_for_python< int > *""'");
- }
- arg1 = reinterpret_cast< step_vector_for_python< int > * >(argp1);
- ecode2 = SWIG_AsVal_long(obj1, &val2);
- if (!SWIG_IsOK(ecode2)) {
- SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "_StepVector_int_add_value" "', argument " "2"" of type '" "long""'");
- }
- arg2 = static_cast< long >(val2);
- ecode3 = SWIG_AsVal_long(obj2, &val3);
- if (!SWIG_IsOK(ecode3)) {
- SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "_StepVector_int_add_value" "', argument " "3"" of type '" "long""'");
- }
- arg3 = static_cast< long >(val3);
- ecode4 = SWIG_AsVal_int(obj3, &val4);
- if (!SWIG_IsOK(ecode4)) {
- SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "_StepVector_int_add_value" "', argument " "4"" of type '" "int""'");
- }
- arg4 = static_cast< int >(val4);
- {
- try {
- (arg1)->add_value(arg2,arg3,arg4);
- } catch (std::out_of_range &e) {
- SWIG_exception(SWIG_IndexError, e.what() );
- } catch (type_error_non_arith &e) {
- SWIG_exception(SWIG_TypeError, "Illegal arithmetic operation" );
- }
- }
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_int_get_all_values_pystyle(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< int > *arg1 = (step_vector_for_python< int > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
- SwigValueWrapper< step_vector_pystyle_iterator< int > > result;
-
- if (!PyArg_ParseTuple(args,(char *)"O:_StepVector_int_get_all_values_pystyle",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_for_pythonT_int_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_int_get_all_values_pystyle" "', argument " "1"" of type '" "step_vector_for_python< int > const *""'");
- }
- arg1 = reinterpret_cast< step_vector_for_python< int > * >(argp1);
- result = ((step_vector_for_python< int > const *)arg1)->get_all_values_pystyle();
- resultobj = SWIG_NewPointerObj((new step_vector_pystyle_iterator< int >(static_cast< const step_vector_pystyle_iterator< int >& >(result))), SWIGTYPE_p_step_vector_pystyle_iteratorT_int_t, SWIG_POINTER_OWN | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_int_get_values_pystyle(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< int > *arg1 = (step_vector_for_python< int > *) 0 ;
- long arg2 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- long val2 ;
- int ecode2 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
- SwigValueWrapper< step_vector_pystyle_iterator< int > > result;
-
- if (!PyArg_ParseTuple(args,(char *)"OO:_StepVector_int_get_values_pystyle",&obj0,&obj1)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_for_pythonT_int_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_int_get_values_pystyle" "', argument " "1"" of type '" "step_vector_for_python< int > const *""'");
- }
- arg1 = reinterpret_cast< step_vector_for_python< int > * >(argp1);
- ecode2 = SWIG_AsVal_long(obj1, &val2);
- if (!SWIG_IsOK(ecode2)) {
- SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "_StepVector_int_get_values_pystyle" "', argument " "2"" of type '" "long""'");
- }
- arg2 = static_cast< long >(val2);
- result = ((step_vector_for_python< int > const *)arg1)->get_values_pystyle(arg2);
- resultobj = SWIG_NewPointerObj((new step_vector_pystyle_iterator< int >(static_cast< const step_vector_pystyle_iterator< int >& >(result))), SWIGTYPE_p_step_vector_pystyle_iteratorT_int_t, SWIG_POINTER_OWN | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_int_num_values(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< int > *arg1 = (step_vector_for_python< int > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
- int result;
-
- if (!PyArg_ParseTuple(args,(char *)"O:_StepVector_int_num_values",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_for_pythonT_int_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_int_num_values" "', argument " "1"" of type '" "step_vector_for_python< int > const *""'");
- }
- arg1 = reinterpret_cast< step_vector_for_python< int > * >(argp1);
- result = (int)((step_vector_for_python< int > const *)arg1)->num_values();
- resultobj = SWIG_From_int(static_cast< int >(result));
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap_delete__StepVector_int(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< int > *arg1 = (step_vector_for_python< int > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"O:delete__StepVector_int",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_for_pythonT_int_t, SWIG_POINTER_DISOWN | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "delete__StepVector_int" "', argument " "1"" of type '" "step_vector_for_python< int > *""'");
- }
- arg1 = reinterpret_cast< step_vector_for_python< int > * >(argp1);
- delete arg1;
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_StepVector_int_swigregister(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *obj;
- if (!PyArg_ParseTuple(args,(char*)"O:swigregister", &obj)) return NULL;
- SWIG_TypeNewClientData(SWIGTYPE_p_step_vector_for_pythonT_int_t, SWIG_NewClientData(obj));
- return SWIG_Py_Void();
-}
-
-SWIGINTERN PyObject *_wrap__Pair_int_bool_first_set(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- std::pair< long,bool > *arg1 = (std::pair< long,bool > *) 0 ;
- long arg2 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- long val2 ;
- int ecode2 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"OO:_Pair_int_bool_first_set",&obj0,&obj1)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_std__pairT_long_bool_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_Pair_int_bool_first_set" "', argument " "1"" of type '" "std::pair< long,bool > *""'");
- }
- arg1 = reinterpret_cast< std::pair< long,bool > * >(argp1);
- ecode2 = SWIG_AsVal_long(obj1, &val2);
- if (!SWIG_IsOK(ecode2)) {
- SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "_Pair_int_bool_first_set" "', argument " "2"" of type '" "long""'");
- }
- arg2 = static_cast< long >(val2);
- if (arg1) (arg1)->first = arg2;
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__Pair_int_bool_first_get(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- std::pair< long,bool > *arg1 = (std::pair< long,bool > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
- long result;
-
- if (!PyArg_ParseTuple(args,(char *)"O:_Pair_int_bool_first_get",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_std__pairT_long_bool_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_Pair_int_bool_first_get" "', argument " "1"" of type '" "std::pair< long,bool > *""'");
- }
- arg1 = reinterpret_cast< std::pair< long,bool > * >(argp1);
- result = (long) ((arg1)->first);
- resultobj = SWIG_From_long(static_cast< long >(result));
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__Pair_int_bool_second_set(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- std::pair< long,bool > *arg1 = (std::pair< long,bool > *) 0 ;
- bool arg2 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- bool val2 ;
- int ecode2 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"OO:_Pair_int_bool_second_set",&obj0,&obj1)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_std__pairT_long_bool_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_Pair_int_bool_second_set" "', argument " "1"" of type '" "std::pair< long,bool > *""'");
- }
- arg1 = reinterpret_cast< std::pair< long,bool > * >(argp1);
- ecode2 = SWIG_AsVal_bool(obj1, &val2);
- if (!SWIG_IsOK(ecode2)) {
- SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "_Pair_int_bool_second_set" "', argument " "2"" of type '" "bool""'");
- }
- arg2 = static_cast< bool >(val2);
- if (arg1) (arg1)->second = arg2;
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__Pair_int_bool_second_get(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- std::pair< long,bool > *arg1 = (std::pair< long,bool > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
- bool result;
-
- if (!PyArg_ParseTuple(args,(char *)"O:_Pair_int_bool_second_get",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_std__pairT_long_bool_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_Pair_int_bool_second_get" "', argument " "1"" of type '" "std::pair< long,bool > *""'");
- }
- arg1 = reinterpret_cast< std::pair< long,bool > * >(argp1);
- result = (bool) ((arg1)->second);
- resultobj = SWIG_From_bool(static_cast< bool >(result));
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap_new__Pair_int_bool(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- long arg1 ;
- bool arg2 ;
- long val1 ;
- int ecode1 = 0 ;
- bool val2 ;
- int ecode2 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
- std::pair< long,bool > *result = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"OO:new__Pair_int_bool",&obj0,&obj1)) SWIG_fail;
- ecode1 = SWIG_AsVal_long(obj0, &val1);
- if (!SWIG_IsOK(ecode1)) {
- SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "new__Pair_int_bool" "', argument " "1"" of type '" "long""'");
- }
- arg1 = static_cast< long >(val1);
- ecode2 = SWIG_AsVal_bool(obj1, &val2);
- if (!SWIG_IsOK(ecode2)) {
- SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "new__Pair_int_bool" "', argument " "2"" of type '" "bool""'");
- }
- arg2 = static_cast< bool >(val2);
- result = (std::pair< long,bool > *)new std::pair< long,bool >(arg1,arg2);
- resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_std__pairT_long_bool_t, SWIG_POINTER_NEW | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap_delete__Pair_int_bool(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- std::pair< long,bool > *arg1 = (std::pair< long,bool > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"O:delete__Pair_int_bool",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_std__pairT_long_bool_t, SWIG_POINTER_DISOWN | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "delete__Pair_int_bool" "', argument " "1"" of type '" "std::pair< long,bool > *""'");
- }
- arg1 = reinterpret_cast< std::pair< long,bool > * >(argp1);
- delete arg1;
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_Pair_int_bool_swigregister(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *obj;
- if (!PyArg_ParseTuple(args,(char*)"O:swigregister", &obj)) return NULL;
- SWIG_TypeNewClientData(SWIGTYPE_p_std__pairT_long_bool_t, SWIG_NewClientData(obj));
- return SWIG_Py_Void();
-}
-
-SWIGINTERN PyObject *_wrap_new__StepVector_Iterator_bool(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector< bool >::const_iterator arg1 ;
- step_vector< bool >::const_iterator arg2 ;
- void *argp1 ;
- int res1 = 0 ;
- void *argp2 ;
- int res2 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
- step_vector_pystyle_iterator< bool > *result = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"OO:new__StepVector_Iterator_bool",&obj0,&obj1)) SWIG_fail;
- {
- res1 = SWIG_ConvertPtr(obj0, &argp1, SWIGTYPE_p_step_vectorT_bool_t__const_iterator, 0 | 0);
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "new__StepVector_Iterator_bool" "', argument " "1"" of type '" "step_vector< bool >::const_iterator""'");
- }
- if (!argp1) {
- SWIG_exception_fail(SWIG_ValueError, "invalid null reference " "in method '" "new__StepVector_Iterator_bool" "', argument " "1"" of type '" "step_vector< bool >::const_iterator""'");
- } else {
- step_vector< bool >::const_iterator * temp = reinterpret_cast< step_vector< bool >::const_iterator * >(argp1);
- arg1 = *temp;
- if (SWIG_IsNewObj(res1)) delete temp;
- }
- }
- {
- res2 = SWIG_ConvertPtr(obj1, &argp2, SWIGTYPE_p_step_vectorT_bool_t__const_iterator, 0 | 0);
- if (!SWIG_IsOK(res2)) {
- SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "new__StepVector_Iterator_bool" "', argument " "2"" of type '" "step_vector< bool >::const_iterator""'");
- }
- if (!argp2) {
- SWIG_exception_fail(SWIG_ValueError, "invalid null reference " "in method '" "new__StepVector_Iterator_bool" "', argument " "2"" of type '" "step_vector< bool >::const_iterator""'");
- } else {
- step_vector< bool >::const_iterator * temp = reinterpret_cast< step_vector< bool >::const_iterator * >(argp2);
- arg2 = *temp;
- if (SWIG_IsNewObj(res2)) delete temp;
- }
- }
- result = (step_vector_pystyle_iterator< bool > *)new step_vector_pystyle_iterator< bool >(arg1,arg2);
- resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_step_vector_pystyle_iteratorT_bool_t, SWIG_POINTER_NEW | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_Iterator_bool_next(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_pystyle_iterator< bool > *arg1 = (step_vector_pystyle_iterator< bool > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
- SwigValueWrapper< std::pair< long,bool > > result;
-
- if (!PyArg_ParseTuple(args,(char *)"O:_StepVector_Iterator_bool_next",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_pystyle_iteratorT_bool_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_Iterator_bool_next" "', argument " "1"" of type '" "step_vector_pystyle_iterator< bool > *""'");
- }
- arg1 = reinterpret_cast< step_vector_pystyle_iterator< bool > * >(argp1);
- {
- try {
- result = (arg1)->next();
- } catch (pystyle_stopiteration &e) {
- PyErr_SetString( PyExc_StopIteration, "" );
- return NULL;
- }
- }
- resultobj = SWIG_NewPointerObj((new std::pair< long,bool >(static_cast< const std::pair< long,bool >& >(result))), SWIGTYPE_p_std__pairT_long_bool_t, SWIG_POINTER_OWN | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_Iterator_bool___iter__(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_pystyle_iterator< bool > *arg1 = (step_vector_pystyle_iterator< bool > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
- step_vector_pystyle_iterator< bool > *result = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"O:_StepVector_Iterator_bool___iter__",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_pystyle_iteratorT_bool_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_Iterator_bool___iter__" "', argument " "1"" of type '" "step_vector_pystyle_iterator< bool > *""'");
- }
- arg1 = reinterpret_cast< step_vector_pystyle_iterator< bool > * >(argp1);
- result = (step_vector_pystyle_iterator< bool > *)(arg1)->__iter__();
- resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_step_vector_pystyle_iteratorT_bool_t, 0 | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap_delete__StepVector_Iterator_bool(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_pystyle_iterator< bool > *arg1 = (step_vector_pystyle_iterator< bool > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"O:delete__StepVector_Iterator_bool",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_pystyle_iteratorT_bool_t, SWIG_POINTER_DISOWN | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "delete__StepVector_Iterator_bool" "', argument " "1"" of type '" "step_vector_pystyle_iterator< bool > *""'");
- }
- arg1 = reinterpret_cast< step_vector_pystyle_iterator< bool > * >(argp1);
- delete arg1;
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_StepVector_Iterator_bool_swigregister(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *obj;
- if (!PyArg_ParseTuple(args,(char*)"O:swigregister", &obj)) return NULL;
- SWIG_TypeNewClientData(SWIGTYPE_p_step_vector_pystyle_iteratorT_bool_t, SWIG_NewClientData(obj));
- return SWIG_Py_Void();
-}
-
-SWIGINTERN int Swig_var__StepVector_bool_min_index_set(PyObject *) {
- SWIG_Error(SWIG_AttributeError,"Variable _StepVector_bool_min_index is read-only.");
- return 1;
-}
-
-
-SWIGINTERN PyObject *Swig_var__StepVector_bool_min_index_get(void) {
- PyObject *pyobj = 0;
-
- pyobj = SWIG_From_long(static_cast< long >(step_vector_for_python< bool >::min_index));
- return pyobj;
-}
-
-
-SWIGINTERN int Swig_var__StepVector_bool_max_index_set(PyObject *) {
- SWIG_Error(SWIG_AttributeError,"Variable _StepVector_bool_max_index is read-only.");
- return 1;
-}
-
-
-SWIGINTERN PyObject *Swig_var__StepVector_bool_max_index_get(void) {
- PyObject *pyobj = 0;
-
- pyobj = SWIG_From_long(static_cast< long >(step_vector_for_python< bool >::max_index));
- return pyobj;
-}
-
-
-SWIGINTERN PyObject *_wrap_new__StepVector_bool(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< bool > *result = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)":new__StepVector_bool")) SWIG_fail;
- result = (step_vector_for_python< bool > *)new step_vector_for_python< bool >();
- resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_step_vector_for_pythonT_bool_t, SWIG_POINTER_NEW | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_bool_set_value(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< bool > *arg1 = (step_vector_for_python< bool > *) 0 ;
- long arg2 ;
- long arg3 ;
- bool arg4 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- long val2 ;
- int ecode2 = 0 ;
- long val3 ;
- int ecode3 = 0 ;
- bool val4 ;
- int ecode4 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
- PyObject * obj2 = 0 ;
- PyObject * obj3 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"OOOO:_StepVector_bool_set_value",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_for_pythonT_bool_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_bool_set_value" "', argument " "1"" of type '" "step_vector_for_python< bool > *""'");
- }
- arg1 = reinterpret_cast< step_vector_for_python< bool > * >(argp1);
- ecode2 = SWIG_AsVal_long(obj1, &val2);
- if (!SWIG_IsOK(ecode2)) {
- SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "_StepVector_bool_set_value" "', argument " "2"" of type '" "long""'");
- }
- arg2 = static_cast< long >(val2);
- ecode3 = SWIG_AsVal_long(obj2, &val3);
- if (!SWIG_IsOK(ecode3)) {
- SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "_StepVector_bool_set_value" "', argument " "3"" of type '" "long""'");
- }
- arg3 = static_cast< long >(val3);
- ecode4 = SWIG_AsVal_bool(obj3, &val4);
- if (!SWIG_IsOK(ecode4)) {
- SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "_StepVector_bool_set_value" "', argument " "4"" of type '" "bool""'");
- }
- arg4 = static_cast< bool >(val4);
- {
- try {
- (arg1)->set_value(arg2,arg3,arg4);
- } catch (std::out_of_range &e) {
- SWIG_exception(SWIG_IndexError, e.what() );
- } catch (type_error_non_arith &e) {
- SWIG_exception(SWIG_TypeError, "Illegal arithmetic operation" );
- }
- }
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_bool_add_value(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< bool > *arg1 = (step_vector_for_python< bool > *) 0 ;
- long arg2 ;
- long arg3 ;
- bool arg4 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- long val2 ;
- int ecode2 = 0 ;
- long val3 ;
- int ecode3 = 0 ;
- bool val4 ;
- int ecode4 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
- PyObject * obj2 = 0 ;
- PyObject * obj3 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"OOOO:_StepVector_bool_add_value",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_for_pythonT_bool_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_bool_add_value" "', argument " "1"" of type '" "step_vector_for_python< bool > *""'");
- }
- arg1 = reinterpret_cast< step_vector_for_python< bool > * >(argp1);
- ecode2 = SWIG_AsVal_long(obj1, &val2);
- if (!SWIG_IsOK(ecode2)) {
- SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "_StepVector_bool_add_value" "', argument " "2"" of type '" "long""'");
- }
- arg2 = static_cast< long >(val2);
- ecode3 = SWIG_AsVal_long(obj2, &val3);
- if (!SWIG_IsOK(ecode3)) {
- SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "_StepVector_bool_add_value" "', argument " "3"" of type '" "long""'");
- }
- arg3 = static_cast< long >(val3);
- ecode4 = SWIG_AsVal_bool(obj3, &val4);
- if (!SWIG_IsOK(ecode4)) {
- SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "_StepVector_bool_add_value" "', argument " "4"" of type '" "bool""'");
- }
- arg4 = static_cast< bool >(val4);
- {
- try {
- (arg1)->add_value(arg2,arg3,arg4);
- } catch (std::out_of_range &e) {
- SWIG_exception(SWIG_IndexError, e.what() );
- } catch (type_error_non_arith &e) {
- SWIG_exception(SWIG_TypeError, "Illegal arithmetic operation" );
- }
- }
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_bool_get_all_values_pystyle(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< bool > *arg1 = (step_vector_for_python< bool > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
- SwigValueWrapper< step_vector_pystyle_iterator< bool > > result;
-
- if (!PyArg_ParseTuple(args,(char *)"O:_StepVector_bool_get_all_values_pystyle",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_for_pythonT_bool_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_bool_get_all_values_pystyle" "', argument " "1"" of type '" "step_vector_for_python< bool > const *""'");
- }
- arg1 = reinterpret_cast< step_vector_for_python< bool > * >(argp1);
- result = ((step_vector_for_python< bool > const *)arg1)->get_all_values_pystyle();
- resultobj = SWIG_NewPointerObj((new step_vector_pystyle_iterator< bool >(static_cast< const step_vector_pystyle_iterator< bool >& >(result))), SWIGTYPE_p_step_vector_pystyle_iteratorT_bool_t, SWIG_POINTER_OWN | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_bool_get_values_pystyle(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< bool > *arg1 = (step_vector_for_python< bool > *) 0 ;
- long arg2 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- long val2 ;
- int ecode2 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
- SwigValueWrapper< step_vector_pystyle_iterator< bool > > result;
-
- if (!PyArg_ParseTuple(args,(char *)"OO:_StepVector_bool_get_values_pystyle",&obj0,&obj1)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_for_pythonT_bool_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_bool_get_values_pystyle" "', argument " "1"" of type '" "step_vector_for_python< bool > const *""'");
- }
- arg1 = reinterpret_cast< step_vector_for_python< bool > * >(argp1);
- ecode2 = SWIG_AsVal_long(obj1, &val2);
- if (!SWIG_IsOK(ecode2)) {
- SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "_StepVector_bool_get_values_pystyle" "', argument " "2"" of type '" "long""'");
- }
- arg2 = static_cast< long >(val2);
- result = ((step_vector_for_python< bool > const *)arg1)->get_values_pystyle(arg2);
- resultobj = SWIG_NewPointerObj((new step_vector_pystyle_iterator< bool >(static_cast< const step_vector_pystyle_iterator< bool >& >(result))), SWIGTYPE_p_step_vector_pystyle_iteratorT_bool_t, SWIG_POINTER_OWN | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_bool_num_values(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< bool > *arg1 = (step_vector_for_python< bool > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
- int result;
-
- if (!PyArg_ParseTuple(args,(char *)"O:_StepVector_bool_num_values",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_for_pythonT_bool_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_bool_num_values" "', argument " "1"" of type '" "step_vector_for_python< bool > const *""'");
- }
- arg1 = reinterpret_cast< step_vector_for_python< bool > * >(argp1);
- result = (int)((step_vector_for_python< bool > const *)arg1)->num_values();
- resultobj = SWIG_From_int(static_cast< int >(result));
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap_delete__StepVector_bool(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< bool > *arg1 = (step_vector_for_python< bool > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"O:delete__StepVector_bool",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_for_pythonT_bool_t, SWIG_POINTER_DISOWN | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "delete__StepVector_bool" "', argument " "1"" of type '" "step_vector_for_python< bool > *""'");
- }
- arg1 = reinterpret_cast< step_vector_for_python< bool > * >(argp1);
- delete arg1;
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_StepVector_bool_swigregister(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *obj;
- if (!PyArg_ParseTuple(args,(char*)"O:swigregister", &obj)) return NULL;
- SWIG_TypeNewClientData(SWIGTYPE_p_step_vector_for_pythonT_bool_t, SWIG_NewClientData(obj));
- return SWIG_Py_Void();
-}
-
-SWIGINTERN PyObject *_wrap__Pair_int_obj_first_set(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- std::pair< long,AutoPyObjPtr > *arg1 = (std::pair< long,AutoPyObjPtr > *) 0 ;
- long arg2 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- long val2 ;
- int ecode2 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"OO:_Pair_int_obj_first_set",&obj0,&obj1)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_std__pairT_long_AutoPyObjPtr_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_Pair_int_obj_first_set" "', argument " "1"" of type '" "std::pair< long,AutoPyObjPtr > *""'");
- }
- arg1 = reinterpret_cast< std::pair< long,AutoPyObjPtr > * >(argp1);
- ecode2 = SWIG_AsVal_long(obj1, &val2);
- if (!SWIG_IsOK(ecode2)) {
- SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "_Pair_int_obj_first_set" "', argument " "2"" of type '" "long""'");
- }
- arg2 = static_cast< long >(val2);
- if (arg1) (arg1)->first = arg2;
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__Pair_int_obj_first_get(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- std::pair< long,AutoPyObjPtr > *arg1 = (std::pair< long,AutoPyObjPtr > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
- long result;
-
- if (!PyArg_ParseTuple(args,(char *)"O:_Pair_int_obj_first_get",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_std__pairT_long_AutoPyObjPtr_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_Pair_int_obj_first_get" "', argument " "1"" of type '" "std::pair< long,AutoPyObjPtr > *""'");
- }
- arg1 = reinterpret_cast< std::pair< long,AutoPyObjPtr > * >(argp1);
- result = (long) ((arg1)->first);
- resultobj = SWIG_From_long(static_cast< long >(result));
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__Pair_int_obj_second_set(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- std::pair< long,AutoPyObjPtr > *arg1 = (std::pair< long,AutoPyObjPtr > *) 0 ;
- AutoPyObjPtr arg2 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"OO:_Pair_int_obj_second_set",&obj0,&obj1)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_std__pairT_long_AutoPyObjPtr_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_Pair_int_obj_second_set" "', argument " "1"" of type '" "std::pair< long,AutoPyObjPtr > *""'");
- }
- arg1 = reinterpret_cast< std::pair< long,AutoPyObjPtr > * >(argp1);
- {
- arg2 = AutoPyObjPtr( obj1 );
- }
- if (arg1) (arg1)->second = arg2;
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__Pair_int_obj_second_get(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- std::pair< long,AutoPyObjPtr > *arg1 = (std::pair< long,AutoPyObjPtr > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
- AutoPyObjPtr result;
-
- if (!PyArg_ParseTuple(args,(char *)"O:_Pair_int_obj_second_get",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_std__pairT_long_AutoPyObjPtr_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_Pair_int_obj_second_get" "', argument " "1"" of type '" "std::pair< long,AutoPyObjPtr > *""'");
- }
- arg1 = reinterpret_cast< std::pair< long,AutoPyObjPtr > * >(argp1);
- result = ((arg1)->second);
- {
- Py_XINCREF( (&result)->obj );
- resultobj = (&result)->obj;
- }
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap_new__Pair_int_obj(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- long arg1 ;
- AutoPyObjPtr arg2 ;
- long val1 ;
- int ecode1 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
- std::pair< long,AutoPyObjPtr > *result = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"OO:new__Pair_int_obj",&obj0,&obj1)) SWIG_fail;
- ecode1 = SWIG_AsVal_long(obj0, &val1);
- if (!SWIG_IsOK(ecode1)) {
- SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "new__Pair_int_obj" "', argument " "1"" of type '" "long""'");
- }
- arg1 = static_cast< long >(val1);
- {
- arg2 = AutoPyObjPtr( obj1 );
- }
- result = (std::pair< long,AutoPyObjPtr > *)new std::pair< long,AutoPyObjPtr >(arg1,arg2);
- resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_std__pairT_long_AutoPyObjPtr_t, SWIG_POINTER_NEW | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap_delete__Pair_int_obj(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- std::pair< long,AutoPyObjPtr > *arg1 = (std::pair< long,AutoPyObjPtr > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"O:delete__Pair_int_obj",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_std__pairT_long_AutoPyObjPtr_t, SWIG_POINTER_DISOWN | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "delete__Pair_int_obj" "', argument " "1"" of type '" "std::pair< long,AutoPyObjPtr > *""'");
- }
- arg1 = reinterpret_cast< std::pair< long,AutoPyObjPtr > * >(argp1);
- delete arg1;
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_Pair_int_obj_swigregister(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *obj;
- if (!PyArg_ParseTuple(args,(char*)"O:swigregister", &obj)) return NULL;
- SWIG_TypeNewClientData(SWIGTYPE_p_std__pairT_long_AutoPyObjPtr_t, SWIG_NewClientData(obj));
- return SWIG_Py_Void();
-}
-
-SWIGINTERN PyObject *_wrap_new__StepVector_Iterator_obj(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector< AutoPyObjPtr >::const_iterator arg1 ;
- step_vector< AutoPyObjPtr >::const_iterator arg2 ;
- void *argp1 ;
- int res1 = 0 ;
- void *argp2 ;
- int res2 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
- step_vector_pystyle_iterator< AutoPyObjPtr > *result = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"OO:new__StepVector_Iterator_obj",&obj0,&obj1)) SWIG_fail;
- {
- res1 = SWIG_ConvertPtr(obj0, &argp1, SWIGTYPE_p_step_vectorT_AutoPyObjPtr_t__const_iterator, 0 | 0);
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "new__StepVector_Iterator_obj" "', argument " "1"" of type '" "step_vector< AutoPyObjPtr >::const_iterator""'");
- }
- if (!argp1) {
- SWIG_exception_fail(SWIG_ValueError, "invalid null reference " "in method '" "new__StepVector_Iterator_obj" "', argument " "1"" of type '" "step_vector< AutoPyObjPtr >::const_iterator""'");
- } else {
- step_vector< AutoPyObjPtr >::const_iterator * temp = reinterpret_cast< step_vector< AutoPyObjPtr >::const_iterator * >(argp1);
- arg1 = *temp;
- if (SWIG_IsNewObj(res1)) delete temp;
- }
- }
- {
- res2 = SWIG_ConvertPtr(obj1, &argp2, SWIGTYPE_p_step_vectorT_AutoPyObjPtr_t__const_iterator, 0 | 0);
- if (!SWIG_IsOK(res2)) {
- SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "new__StepVector_Iterator_obj" "', argument " "2"" of type '" "step_vector< AutoPyObjPtr >::const_iterator""'");
- }
- if (!argp2) {
- SWIG_exception_fail(SWIG_ValueError, "invalid null reference " "in method '" "new__StepVector_Iterator_obj" "', argument " "2"" of type '" "step_vector< AutoPyObjPtr >::const_iterator""'");
- } else {
- step_vector< AutoPyObjPtr >::const_iterator * temp = reinterpret_cast< step_vector< AutoPyObjPtr >::const_iterator * >(argp2);
- arg2 = *temp;
- if (SWIG_IsNewObj(res2)) delete temp;
- }
- }
- result = (step_vector_pystyle_iterator< AutoPyObjPtr > *)new step_vector_pystyle_iterator< AutoPyObjPtr >(arg1,arg2);
- resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_step_vector_pystyle_iteratorT_AutoPyObjPtr_t, SWIG_POINTER_NEW | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_Iterator_obj_next(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_pystyle_iterator< AutoPyObjPtr > *arg1 = (step_vector_pystyle_iterator< AutoPyObjPtr > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
- SwigValueWrapper< std::pair< long,AutoPyObjPtr > > result;
-
- if (!PyArg_ParseTuple(args,(char *)"O:_StepVector_Iterator_obj_next",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_pystyle_iteratorT_AutoPyObjPtr_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_Iterator_obj_next" "', argument " "1"" of type '" "step_vector_pystyle_iterator< AutoPyObjPtr > *""'");
- }
- arg1 = reinterpret_cast< step_vector_pystyle_iterator< AutoPyObjPtr > * >(argp1);
- {
- try {
- result = (arg1)->next();
- } catch (pystyle_stopiteration &e) {
- PyErr_SetString( PyExc_StopIteration, "" );
- return NULL;
- }
- }
- resultobj = SWIG_NewPointerObj((new std::pair< long,AutoPyObjPtr >(static_cast< const std::pair< long,AutoPyObjPtr >& >(result))), SWIGTYPE_p_std__pairT_long_AutoPyObjPtr_t, SWIG_POINTER_OWN | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_Iterator_obj___iter__(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_pystyle_iterator< AutoPyObjPtr > *arg1 = (step_vector_pystyle_iterator< AutoPyObjPtr > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
- step_vector_pystyle_iterator< AutoPyObjPtr > *result = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"O:_StepVector_Iterator_obj___iter__",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_pystyle_iteratorT_AutoPyObjPtr_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_Iterator_obj___iter__" "', argument " "1"" of type '" "step_vector_pystyle_iterator< AutoPyObjPtr > *""'");
- }
- arg1 = reinterpret_cast< step_vector_pystyle_iterator< AutoPyObjPtr > * >(argp1);
- result = (step_vector_pystyle_iterator< AutoPyObjPtr > *)(arg1)->__iter__();
- resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_step_vector_pystyle_iteratorT_AutoPyObjPtr_t, 0 | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap_delete__StepVector_Iterator_obj(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_pystyle_iterator< AutoPyObjPtr > *arg1 = (step_vector_pystyle_iterator< AutoPyObjPtr > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"O:delete__StepVector_Iterator_obj",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_pystyle_iteratorT_AutoPyObjPtr_t, SWIG_POINTER_DISOWN | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "delete__StepVector_Iterator_obj" "', argument " "1"" of type '" "step_vector_pystyle_iterator< AutoPyObjPtr > *""'");
- }
- arg1 = reinterpret_cast< step_vector_pystyle_iterator< AutoPyObjPtr > * >(argp1);
- delete arg1;
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_StepVector_Iterator_obj_swigregister(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *obj;
- if (!PyArg_ParseTuple(args,(char*)"O:swigregister", &obj)) return NULL;
- SWIG_TypeNewClientData(SWIGTYPE_p_step_vector_pystyle_iteratorT_AutoPyObjPtr_t, SWIG_NewClientData(obj));
- return SWIG_Py_Void();
-}
-
-SWIGINTERN int Swig_var__StepVector_obj_min_index_set(PyObject *) {
- SWIG_Error(SWIG_AttributeError,"Variable _StepVector_obj_min_index is read-only.");
- return 1;
-}
-
-
-SWIGINTERN PyObject *Swig_var__StepVector_obj_min_index_get(void) {
- PyObject *pyobj = 0;
-
- pyobj = SWIG_From_long(static_cast< long >(step_vector_for_python< AutoPyObjPtr >::min_index));
- return pyobj;
-}
-
-
-SWIGINTERN int Swig_var__StepVector_obj_max_index_set(PyObject *) {
- SWIG_Error(SWIG_AttributeError,"Variable _StepVector_obj_max_index is read-only.");
- return 1;
-}
-
-
-SWIGINTERN PyObject *Swig_var__StepVector_obj_max_index_get(void) {
- PyObject *pyobj = 0;
-
- pyobj = SWIG_From_long(static_cast< long >(step_vector_for_python< AutoPyObjPtr >::max_index));
- return pyobj;
-}
-
-
-SWIGINTERN PyObject *_wrap_new__StepVector_obj(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< AutoPyObjPtr > *result = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)":new__StepVector_obj")) SWIG_fail;
- result = (step_vector_for_python< AutoPyObjPtr > *)new step_vector_for_python< AutoPyObjPtr >();
- resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_step_vector_for_pythonT_AutoPyObjPtr_t, SWIG_POINTER_NEW | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_obj_set_value(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< AutoPyObjPtr > *arg1 = (step_vector_for_python< AutoPyObjPtr > *) 0 ;
- long arg2 ;
- long arg3 ;
- AutoPyObjPtr arg4 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- long val2 ;
- int ecode2 = 0 ;
- long val3 ;
- int ecode3 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
- PyObject * obj2 = 0 ;
- PyObject * obj3 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"OOOO:_StepVector_obj_set_value",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_for_pythonT_AutoPyObjPtr_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_obj_set_value" "', argument " "1"" of type '" "step_vector_for_python< AutoPyObjPtr > *""'");
- }
- arg1 = reinterpret_cast< step_vector_for_python< AutoPyObjPtr > * >(argp1);
- ecode2 = SWIG_AsVal_long(obj1, &val2);
- if (!SWIG_IsOK(ecode2)) {
- SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "_StepVector_obj_set_value" "', argument " "2"" of type '" "long""'");
- }
- arg2 = static_cast< long >(val2);
- ecode3 = SWIG_AsVal_long(obj2, &val3);
- if (!SWIG_IsOK(ecode3)) {
- SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "_StepVector_obj_set_value" "', argument " "3"" of type '" "long""'");
- }
- arg3 = static_cast< long >(val3);
- {
- arg4 = AutoPyObjPtr( obj3 );
- }
- {
- try {
- (arg1)->set_value(arg2,arg3,arg4);
- } catch (std::out_of_range &e) {
- SWIG_exception(SWIG_IndexError, e.what() );
- } catch (type_error_non_arith &e) {
- SWIG_exception(SWIG_TypeError, "Illegal arithmetic operation" );
- }
- }
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_obj_add_value(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< AutoPyObjPtr > *arg1 = (step_vector_for_python< AutoPyObjPtr > *) 0 ;
- long arg2 ;
- long arg3 ;
- AutoPyObjPtr arg4 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- long val2 ;
- int ecode2 = 0 ;
- long val3 ;
- int ecode3 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
- PyObject * obj2 = 0 ;
- PyObject * obj3 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"OOOO:_StepVector_obj_add_value",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_for_pythonT_AutoPyObjPtr_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_obj_add_value" "', argument " "1"" of type '" "step_vector_for_python< AutoPyObjPtr > *""'");
- }
- arg1 = reinterpret_cast< step_vector_for_python< AutoPyObjPtr > * >(argp1);
- ecode2 = SWIG_AsVal_long(obj1, &val2);
- if (!SWIG_IsOK(ecode2)) {
- SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "_StepVector_obj_add_value" "', argument " "2"" of type '" "long""'");
- }
- arg2 = static_cast< long >(val2);
- ecode3 = SWIG_AsVal_long(obj2, &val3);
- if (!SWIG_IsOK(ecode3)) {
- SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "_StepVector_obj_add_value" "', argument " "3"" of type '" "long""'");
- }
- arg3 = static_cast< long >(val3);
- {
- arg4 = AutoPyObjPtr( obj3 );
- }
- {
- try {
- (arg1)->add_value(arg2,arg3,arg4);
- } catch (std::out_of_range &e) {
- SWIG_exception(SWIG_IndexError, e.what() );
- } catch (type_error_non_arith &e) {
- SWIG_exception(SWIG_TypeError, "Illegal arithmetic operation" );
- }
- }
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_obj_get_all_values_pystyle(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< AutoPyObjPtr > *arg1 = (step_vector_for_python< AutoPyObjPtr > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
- SwigValueWrapper< step_vector_pystyle_iterator< AutoPyObjPtr > > result;
-
- if (!PyArg_ParseTuple(args,(char *)"O:_StepVector_obj_get_all_values_pystyle",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_for_pythonT_AutoPyObjPtr_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_obj_get_all_values_pystyle" "', argument " "1"" of type '" "step_vector_for_python< AutoPyObjPtr > const *""'");
- }
- arg1 = reinterpret_cast< step_vector_for_python< AutoPyObjPtr > * >(argp1);
- result = ((step_vector_for_python< AutoPyObjPtr > const *)arg1)->get_all_values_pystyle();
- resultobj = SWIG_NewPointerObj((new step_vector_pystyle_iterator< AutoPyObjPtr >(static_cast< const step_vector_pystyle_iterator< AutoPyObjPtr >& >(result))), SWIGTYPE_p_step_vector_pystyle_iteratorT_AutoPyObjPtr_t, SWIG_POINTER_OWN | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_obj_get_values_pystyle(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< AutoPyObjPtr > *arg1 = (step_vector_for_python< AutoPyObjPtr > *) 0 ;
- long arg2 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- long val2 ;
- int ecode2 = 0 ;
- PyObject * obj0 = 0 ;
- PyObject * obj1 = 0 ;
- SwigValueWrapper< step_vector_pystyle_iterator< AutoPyObjPtr > > result;
-
- if (!PyArg_ParseTuple(args,(char *)"OO:_StepVector_obj_get_values_pystyle",&obj0,&obj1)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_for_pythonT_AutoPyObjPtr_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_obj_get_values_pystyle" "', argument " "1"" of type '" "step_vector_for_python< AutoPyObjPtr > const *""'");
- }
- arg1 = reinterpret_cast< step_vector_for_python< AutoPyObjPtr > * >(argp1);
- ecode2 = SWIG_AsVal_long(obj1, &val2);
- if (!SWIG_IsOK(ecode2)) {
- SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "_StepVector_obj_get_values_pystyle" "', argument " "2"" of type '" "long""'");
- }
- arg2 = static_cast< long >(val2);
- result = ((step_vector_for_python< AutoPyObjPtr > const *)arg1)->get_values_pystyle(arg2);
- resultobj = SWIG_NewPointerObj((new step_vector_pystyle_iterator< AutoPyObjPtr >(static_cast< const step_vector_pystyle_iterator< AutoPyObjPtr >& >(result))), SWIGTYPE_p_step_vector_pystyle_iteratorT_AutoPyObjPtr_t, SWIG_POINTER_OWN | 0 );
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap__StepVector_obj_num_values(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< AutoPyObjPtr > *arg1 = (step_vector_for_python< AutoPyObjPtr > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
- int result;
-
- if (!PyArg_ParseTuple(args,(char *)"O:_StepVector_obj_num_values",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_for_pythonT_AutoPyObjPtr_t, 0 | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "_StepVector_obj_num_values" "', argument " "1"" of type '" "step_vector_for_python< AutoPyObjPtr > const *""'");
- }
- arg1 = reinterpret_cast< step_vector_for_python< AutoPyObjPtr > * >(argp1);
- result = (int)((step_vector_for_python< AutoPyObjPtr > const *)arg1)->num_values();
- resultobj = SWIG_From_int(static_cast< int >(result));
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_wrap_delete__StepVector_obj(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *resultobj = 0;
- step_vector_for_python< AutoPyObjPtr > *arg1 = (step_vector_for_python< AutoPyObjPtr > *) 0 ;
- void *argp1 = 0 ;
- int res1 = 0 ;
- PyObject * obj0 = 0 ;
-
- if (!PyArg_ParseTuple(args,(char *)"O:delete__StepVector_obj",&obj0)) SWIG_fail;
- res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_step_vector_for_pythonT_AutoPyObjPtr_t, SWIG_POINTER_DISOWN | 0 );
- if (!SWIG_IsOK(res1)) {
- SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "delete__StepVector_obj" "', argument " "1"" of type '" "step_vector_for_python< AutoPyObjPtr > *""'");
- }
- arg1 = reinterpret_cast< step_vector_for_python< AutoPyObjPtr > * >(argp1);
- delete arg1;
- resultobj = SWIG_Py_Void();
- return resultobj;
-fail:
- return NULL;
-}
-
-
-SWIGINTERN PyObject *_StepVector_obj_swigregister(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
- PyObject *obj;
- if (!PyArg_ParseTuple(args,(char*)"O:swigregister", &obj)) return NULL;
- SWIG_TypeNewClientData(SWIGTYPE_p_step_vector_for_pythonT_AutoPyObjPtr_t, SWIG_NewClientData(obj));
- return SWIG_Py_Void();
-}
-
-static PyMethodDef SwigMethods[] = {
- { (char *)"SWIG_PyInstanceMethod_New", (PyCFunction)SWIG_PyInstanceMethod_New, METH_O, NULL},
- { (char *)"_Pair_int_float_first_set", _wrap__Pair_int_float_first_set, METH_VARARGS, NULL},
- { (char *)"_Pair_int_float_first_get", _wrap__Pair_int_float_first_get, METH_VARARGS, NULL},
- { (char *)"_Pair_int_float_second_set", _wrap__Pair_int_float_second_set, METH_VARARGS, NULL},
- { (char *)"_Pair_int_float_second_get", _wrap__Pair_int_float_second_get, METH_VARARGS, NULL},
- { (char *)"new__Pair_int_float", _wrap_new__Pair_int_float, METH_VARARGS, NULL},
- { (char *)"delete__Pair_int_float", _wrap_delete__Pair_int_float, METH_VARARGS, NULL},
- { (char *)"_Pair_int_float_swigregister", _Pair_int_float_swigregister, METH_VARARGS, NULL},
- { (char *)"new__StepVector_Iterator_float", _wrap_new__StepVector_Iterator_float, METH_VARARGS, NULL},
- { (char *)"_StepVector_Iterator_float_next", _wrap__StepVector_Iterator_float_next, METH_VARARGS, NULL},
- { (char *)"_StepVector_Iterator_float___iter__", _wrap__StepVector_Iterator_float___iter__, METH_VARARGS, NULL},
- { (char *)"delete__StepVector_Iterator_float", _wrap_delete__StepVector_Iterator_float, METH_VARARGS, NULL},
- { (char *)"_StepVector_Iterator_float_swigregister", _StepVector_Iterator_float_swigregister, METH_VARARGS, NULL},
- { (char *)"new__StepVector_float", _wrap_new__StepVector_float, METH_VARARGS, NULL},
- { (char *)"_StepVector_float_set_value", _wrap__StepVector_float_set_value, METH_VARARGS, NULL},
- { (char *)"_StepVector_float_add_value", _wrap__StepVector_float_add_value, METH_VARARGS, NULL},
- { (char *)"_StepVector_float_get_all_values_pystyle", _wrap__StepVector_float_get_all_values_pystyle, METH_VARARGS, NULL},
- { (char *)"_StepVector_float_get_values_pystyle", _wrap__StepVector_float_get_values_pystyle, METH_VARARGS, NULL},
- { (char *)"_StepVector_float_num_values", _wrap__StepVector_float_num_values, METH_VARARGS, NULL},
- { (char *)"delete__StepVector_float", _wrap_delete__StepVector_float, METH_VARARGS, NULL},
- { (char *)"_StepVector_float_swigregister", _StepVector_float_swigregister, METH_VARARGS, NULL},
- { (char *)"_Pair_int_int_first_set", _wrap__Pair_int_int_first_set, METH_VARARGS, NULL},
- { (char *)"_Pair_int_int_first_get", _wrap__Pair_int_int_first_get, METH_VARARGS, NULL},
- { (char *)"_Pair_int_int_second_set", _wrap__Pair_int_int_second_set, METH_VARARGS, NULL},
- { (char *)"_Pair_int_int_second_get", _wrap__Pair_int_int_second_get, METH_VARARGS, NULL},
- { (char *)"new__Pair_int_int", _wrap_new__Pair_int_int, METH_VARARGS, NULL},
- { (char *)"delete__Pair_int_int", _wrap_delete__Pair_int_int, METH_VARARGS, NULL},
- { (char *)"_Pair_int_int_swigregister", _Pair_int_int_swigregister, METH_VARARGS, NULL},
- { (char *)"new__StepVector_Iterator_int", _wrap_new__StepVector_Iterator_int, METH_VARARGS, NULL},
- { (char *)"_StepVector_Iterator_int_next", _wrap__StepVector_Iterator_int_next, METH_VARARGS, NULL},
- { (char *)"_StepVector_Iterator_int___iter__", _wrap__StepVector_Iterator_int___iter__, METH_VARARGS, NULL},
- { (char *)"delete__StepVector_Iterator_int", _wrap_delete__StepVector_Iterator_int, METH_VARARGS, NULL},
- { (char *)"_StepVector_Iterator_int_swigregister", _StepVector_Iterator_int_swigregister, METH_VARARGS, NULL},
- { (char *)"new__StepVector_int", _wrap_new__StepVector_int, METH_VARARGS, NULL},
- { (char *)"_StepVector_int_set_value", _wrap__StepVector_int_set_value, METH_VARARGS, NULL},
- { (char *)"_StepVector_int_add_value", _wrap__StepVector_int_add_value, METH_VARARGS, NULL},
- { (char *)"_StepVector_int_get_all_values_pystyle", _wrap__StepVector_int_get_all_values_pystyle, METH_VARARGS, NULL},
- { (char *)"_StepVector_int_get_values_pystyle", _wrap__StepVector_int_get_values_pystyle, METH_VARARGS, NULL},
- { (char *)"_StepVector_int_num_values", _wrap__StepVector_int_num_values, METH_VARARGS, NULL},
- { (char *)"delete__StepVector_int", _wrap_delete__StepVector_int, METH_VARARGS, NULL},
- { (char *)"_StepVector_int_swigregister", _StepVector_int_swigregister, METH_VARARGS, NULL},
- { (char *)"_Pair_int_bool_first_set", _wrap__Pair_int_bool_first_set, METH_VARARGS, NULL},
- { (char *)"_Pair_int_bool_first_get", _wrap__Pair_int_bool_first_get, METH_VARARGS, NULL},
- { (char *)"_Pair_int_bool_second_set", _wrap__Pair_int_bool_second_set, METH_VARARGS, NULL},
- { (char *)"_Pair_int_bool_second_get", _wrap__Pair_int_bool_second_get, METH_VARARGS, NULL},
- { (char *)"new__Pair_int_bool", _wrap_new__Pair_int_bool, METH_VARARGS, NULL},
- { (char *)"delete__Pair_int_bool", _wrap_delete__Pair_int_bool, METH_VARARGS, NULL},
- { (char *)"_Pair_int_bool_swigregister", _Pair_int_bool_swigregister, METH_VARARGS, NULL},
- { (char *)"new__StepVector_Iterator_bool", _wrap_new__StepVector_Iterator_bool, METH_VARARGS, NULL},
- { (char *)"_StepVector_Iterator_bool_next", _wrap__StepVector_Iterator_bool_next, METH_VARARGS, NULL},
- { (char *)"_StepVector_Iterator_bool___iter__", _wrap__StepVector_Iterator_bool___iter__, METH_VARARGS, NULL},
- { (char *)"delete__StepVector_Iterator_bool", _wrap_delete__StepVector_Iterator_bool, METH_VARARGS, NULL},
- { (char *)"_StepVector_Iterator_bool_swigregister", _StepVector_Iterator_bool_swigregister, METH_VARARGS, NULL},
- { (char *)"new__StepVector_bool", _wrap_new__StepVector_bool, METH_VARARGS, NULL},
- { (char *)"_StepVector_bool_set_value", _wrap__StepVector_bool_set_value, METH_VARARGS, NULL},
- { (char *)"_StepVector_bool_add_value", _wrap__StepVector_bool_add_value, METH_VARARGS, NULL},
- { (char *)"_StepVector_bool_get_all_values_pystyle", _wrap__StepVector_bool_get_all_values_pystyle, METH_VARARGS, NULL},
- { (char *)"_StepVector_bool_get_values_pystyle", _wrap__StepVector_bool_get_values_pystyle, METH_VARARGS, NULL},
- { (char *)"_StepVector_bool_num_values", _wrap__StepVector_bool_num_values, METH_VARARGS, NULL},
- { (char *)"delete__StepVector_bool", _wrap_delete__StepVector_bool, METH_VARARGS, NULL},
- { (char *)"_StepVector_bool_swigregister", _StepVector_bool_swigregister, METH_VARARGS, NULL},
- { (char *)"_Pair_int_obj_first_set", _wrap__Pair_int_obj_first_set, METH_VARARGS, NULL},
- { (char *)"_Pair_int_obj_first_get", _wrap__Pair_int_obj_first_get, METH_VARARGS, NULL},
- { (char *)"_Pair_int_obj_second_set", _wrap__Pair_int_obj_second_set, METH_VARARGS, NULL},
- { (char *)"_Pair_int_obj_second_get", _wrap__Pair_int_obj_second_get, METH_VARARGS, NULL},
- { (char *)"new__Pair_int_obj", _wrap_new__Pair_int_obj, METH_VARARGS, NULL},
- { (char *)"delete__Pair_int_obj", _wrap_delete__Pair_int_obj, METH_VARARGS, NULL},
- { (char *)"_Pair_int_obj_swigregister", _Pair_int_obj_swigregister, METH_VARARGS, NULL},
- { (char *)"new__StepVector_Iterator_obj", _wrap_new__StepVector_Iterator_obj, METH_VARARGS, NULL},
- { (char *)"_StepVector_Iterator_obj_next", _wrap__StepVector_Iterator_obj_next, METH_VARARGS, NULL},
- { (char *)"_StepVector_Iterator_obj___iter__", _wrap__StepVector_Iterator_obj___iter__, METH_VARARGS, NULL},
- { (char *)"delete__StepVector_Iterator_obj", _wrap_delete__StepVector_Iterator_obj, METH_VARARGS, NULL},
- { (char *)"_StepVector_Iterator_obj_swigregister", _StepVector_Iterator_obj_swigregister, METH_VARARGS, NULL},
- { (char *)"new__StepVector_obj", _wrap_new__StepVector_obj, METH_VARARGS, NULL},
- { (char *)"_StepVector_obj_set_value", _wrap__StepVector_obj_set_value, METH_VARARGS, NULL},
- { (char *)"_StepVector_obj_add_value", _wrap__StepVector_obj_add_value, METH_VARARGS, NULL},
- { (char *)"_StepVector_obj_get_all_values_pystyle", _wrap__StepVector_obj_get_all_values_pystyle, METH_VARARGS, NULL},
- { (char *)"_StepVector_obj_get_values_pystyle", _wrap__StepVector_obj_get_values_pystyle, METH_VARARGS, NULL},
- { (char *)"_StepVector_obj_num_values", _wrap__StepVector_obj_num_values, METH_VARARGS, NULL},
- { (char *)"delete__StepVector_obj", _wrap_delete__StepVector_obj, METH_VARARGS, NULL},
- { (char *)"_StepVector_obj_swigregister", _StepVector_obj_swigregister, METH_VARARGS, NULL},
- { NULL, NULL, 0, NULL }
-};
-
-
-/* -------- TYPE CONVERSION AND EQUIVALENCE RULES (BEGIN) -------- */
-
-static swig_type_info _swigt__p_AutoPyObjPtr = {"_p_AutoPyObjPtr", "AutoPyObjPtr *", 0, 0, (void*)0, 0};
-static swig_type_info _swigt__p_char = {"_p_char", "char *", 0, 0, (void*)0, 0};
-static swig_type_info _swigt__p_std__pairT_long_AutoPyObjPtr_t = {"_p_std__pairT_long_AutoPyObjPtr_t", "std::pair< long,AutoPyObjPtr > *", 0, 0, (void*)0, 0};
-static swig_type_info _swigt__p_std__pairT_long_bool_t = {"_p_std__pairT_long_bool_t", "std::pair< long,bool > *", 0, 0, (void*)0, 0};
-static swig_type_info _swigt__p_std__pairT_long_double_t = {"_p_std__pairT_long_double_t", "std::pair< long,double > *", 0, 0, (void*)0, 0};
-static swig_type_info _swigt__p_std__pairT_long_int_t = {"_p_std__pairT_long_int_t", "std::pair< long,int > *", 0, 0, (void*)0, 0};
-static swig_type_info _swigt__p_step_vectorT_AutoPyObjPtr_t__const_iterator = {"_p_step_vectorT_AutoPyObjPtr_t__const_iterator", "step_vector< AutoPyObjPtr >::const_iterator *", 0, 0, (void*)0, 0};
-static swig_type_info _swigt__p_step_vectorT_bool_t__const_iterator = {"_p_step_vectorT_bool_t__const_iterator", "step_vector< bool >::const_iterator *", 0, 0, (void*)0, 0};
-static swig_type_info _swigt__p_step_vectorT_double_t__const_iterator = {"_p_step_vectorT_double_t__const_iterator", "step_vector< double >::const_iterator *", 0, 0, (void*)0, 0};
-static swig_type_info _swigt__p_step_vectorT_int_t__const_iterator = {"_p_step_vectorT_int_t__const_iterator", "step_vector< int >::const_iterator *", 0, 0, (void*)0, 0};
-static swig_type_info _swigt__p_step_vector_for_pythonT_AutoPyObjPtr_t = {"_p_step_vector_for_pythonT_AutoPyObjPtr_t", "step_vector_for_python< AutoPyObjPtr > *", 0, 0, (void*)0, 0};
-static swig_type_info _swigt__p_step_vector_for_pythonT_bool_t = {"_p_step_vector_for_pythonT_bool_t", "step_vector_for_python< bool > *", 0, 0, (void*)0, 0};
-static swig_type_info _swigt__p_step_vector_for_pythonT_double_t = {"_p_step_vector_for_pythonT_double_t", "step_vector_for_python< double > *", 0, 0, (void*)0, 0};
-static swig_type_info _swigt__p_step_vector_for_pythonT_int_t = {"_p_step_vector_for_pythonT_int_t", "step_vector_for_python< int > *", 0, 0, (void*)0, 0};
-static swig_type_info _swigt__p_step_vector_pystyle_iteratorT_AutoPyObjPtr_t = {"_p_step_vector_pystyle_iteratorT_AutoPyObjPtr_t", "step_vector_pystyle_iterator< AutoPyObjPtr > *", 0, 0, (void*)0, 0};
-static swig_type_info _swigt__p_step_vector_pystyle_iteratorT_bool_t = {"_p_step_vector_pystyle_iteratorT_bool_t", "step_vector_pystyle_iterator< bool > *", 0, 0, (void*)0, 0};
-static swig_type_info _swigt__p_step_vector_pystyle_iteratorT_double_t = {"_p_step_vector_pystyle_iteratorT_double_t", "step_vector_pystyle_iterator< double > *", 0, 0, (void*)0, 0};
-static swig_type_info _swigt__p_step_vector_pystyle_iteratorT_int_t = {"_p_step_vector_pystyle_iteratorT_int_t", "step_vector_pystyle_iterator< int > *", 0, 0, (void*)0, 0};
-
-static swig_type_info *swig_type_initial[] = {
- &_swigt__p_AutoPyObjPtr,
- &_swigt__p_char,
- &_swigt__p_std__pairT_long_AutoPyObjPtr_t,
- &_swigt__p_std__pairT_long_bool_t,
- &_swigt__p_std__pairT_long_double_t,
- &_swigt__p_std__pairT_long_int_t,
- &_swigt__p_step_vectorT_AutoPyObjPtr_t__const_iterator,
- &_swigt__p_step_vectorT_bool_t__const_iterator,
- &_swigt__p_step_vectorT_double_t__const_iterator,
- &_swigt__p_step_vectorT_int_t__const_iterator,
- &_swigt__p_step_vector_for_pythonT_AutoPyObjPtr_t,
- &_swigt__p_step_vector_for_pythonT_bool_t,
- &_swigt__p_step_vector_for_pythonT_double_t,
- &_swigt__p_step_vector_for_pythonT_int_t,
- &_swigt__p_step_vector_pystyle_iteratorT_AutoPyObjPtr_t,
- &_swigt__p_step_vector_pystyle_iteratorT_bool_t,
- &_swigt__p_step_vector_pystyle_iteratorT_double_t,
- &_swigt__p_step_vector_pystyle_iteratorT_int_t,
-};
-
-static swig_cast_info _swigc__p_AutoPyObjPtr[] = { {&_swigt__p_AutoPyObjPtr, 0, 0, 0},{0, 0, 0, 0}};
-static swig_cast_info _swigc__p_char[] = { {&_swigt__p_char, 0, 0, 0},{0, 0, 0, 0}};
-static swig_cast_info _swigc__p_std__pairT_long_AutoPyObjPtr_t[] = { {&_swigt__p_std__pairT_long_AutoPyObjPtr_t, 0, 0, 0},{0, 0, 0, 0}};
-static swig_cast_info _swigc__p_std__pairT_long_bool_t[] = { {&_swigt__p_std__pairT_long_bool_t, 0, 0, 0},{0, 0, 0, 0}};
-static swig_cast_info _swigc__p_std__pairT_long_double_t[] = { {&_swigt__p_std__pairT_long_double_t, 0, 0, 0},{0, 0, 0, 0}};
-static swig_cast_info _swigc__p_std__pairT_long_int_t[] = { {&_swigt__p_std__pairT_long_int_t, 0, 0, 0},{0, 0, 0, 0}};
-static swig_cast_info _swigc__p_step_vectorT_AutoPyObjPtr_t__const_iterator[] = { {&_swigt__p_step_vectorT_AutoPyObjPtr_t__const_iterator, 0, 0, 0},{0, 0, 0, 0}};
-static swig_cast_info _swigc__p_step_vectorT_bool_t__const_iterator[] = { {&_swigt__p_step_vectorT_bool_t__const_iterator, 0, 0, 0},{0, 0, 0, 0}};
-static swig_cast_info _swigc__p_step_vectorT_double_t__const_iterator[] = { {&_swigt__p_step_vectorT_double_t__const_iterator, 0, 0, 0},{0, 0, 0, 0}};
-static swig_cast_info _swigc__p_step_vectorT_int_t__const_iterator[] = { {&_swigt__p_step_vectorT_int_t__const_iterator, 0, 0, 0},{0, 0, 0, 0}};
-static swig_cast_info _swigc__p_step_vector_for_pythonT_AutoPyObjPtr_t[] = { {&_swigt__p_step_vector_for_pythonT_AutoPyObjPtr_t, 0, 0, 0},{0, 0, 0, 0}};
-static swig_cast_info _swigc__p_step_vector_for_pythonT_bool_t[] = { {&_swigt__p_step_vector_for_pythonT_bool_t, 0, 0, 0},{0, 0, 0, 0}};
-static swig_cast_info _swigc__p_step_vector_for_pythonT_double_t[] = { {&_swigt__p_step_vector_for_pythonT_double_t, 0, 0, 0},{0, 0, 0, 0}};
-static swig_cast_info _swigc__p_step_vector_for_pythonT_int_t[] = { {&_swigt__p_step_vector_for_pythonT_int_t, 0, 0, 0},{0, 0, 0, 0}};
-static swig_cast_info _swigc__p_step_vector_pystyle_iteratorT_AutoPyObjPtr_t[] = { {&_swigt__p_step_vector_pystyle_iteratorT_AutoPyObjPtr_t, 0, 0, 0},{0, 0, 0, 0}};
-static swig_cast_info _swigc__p_step_vector_pystyle_iteratorT_bool_t[] = { {&_swigt__p_step_vector_pystyle_iteratorT_bool_t, 0, 0, 0},{0, 0, 0, 0}};
-static swig_cast_info _swigc__p_step_vector_pystyle_iteratorT_double_t[] = { {&_swigt__p_step_vector_pystyle_iteratorT_double_t, 0, 0, 0},{0, 0, 0, 0}};
-static swig_cast_info _swigc__p_step_vector_pystyle_iteratorT_int_t[] = { {&_swigt__p_step_vector_pystyle_iteratorT_int_t, 0, 0, 0},{0, 0, 0, 0}};
-
-static swig_cast_info *swig_cast_initial[] = {
- _swigc__p_AutoPyObjPtr,
- _swigc__p_char,
- _swigc__p_std__pairT_long_AutoPyObjPtr_t,
- _swigc__p_std__pairT_long_bool_t,
- _swigc__p_std__pairT_long_double_t,
- _swigc__p_std__pairT_long_int_t,
- _swigc__p_step_vectorT_AutoPyObjPtr_t__const_iterator,
- _swigc__p_step_vectorT_bool_t__const_iterator,
- _swigc__p_step_vectorT_double_t__const_iterator,
- _swigc__p_step_vectorT_int_t__const_iterator,
- _swigc__p_step_vector_for_pythonT_AutoPyObjPtr_t,
- _swigc__p_step_vector_for_pythonT_bool_t,
- _swigc__p_step_vector_for_pythonT_double_t,
- _swigc__p_step_vector_for_pythonT_int_t,
- _swigc__p_step_vector_pystyle_iteratorT_AutoPyObjPtr_t,
- _swigc__p_step_vector_pystyle_iteratorT_bool_t,
- _swigc__p_step_vector_pystyle_iteratorT_double_t,
- _swigc__p_step_vector_pystyle_iteratorT_int_t,
-};
-
-
-/* -------- TYPE CONVERSION AND EQUIVALENCE RULES (END) -------- */
-
-static swig_const_info swig_const_table[] = {
-{0, 0, 0, 0.0, 0, 0}};
-
-#ifdef __cplusplus
-}
-#endif
-/* -----------------------------------------------------------------------------
- * Type initialization:
- * This problem is tough by the requirement that no dynamic
- * memory is used. Also, since swig_type_info structures store pointers to
- * swig_cast_info structures and swig_cast_info structures store pointers back
- * to swig_type_info structures, we need some lookup code at initialization.
- * The idea is that swig generates all the structures that are needed.
- * The runtime then collects these partially filled structures.
- * The SWIG_InitializeModule function takes these initial arrays out of
- * swig_module, and does all the lookup, filling in the swig_module.types
- * array with the correct data and linking the correct swig_cast_info
- * structures together.
- *
- * The generated swig_type_info structures are assigned staticly to an initial
- * array. We just loop through that array, and handle each type individually.
- * First we lookup if this type has been already loaded, and if so, use the
- * loaded structure instead of the generated one. Then we have to fill in the
- * cast linked list. The cast data is initially stored in something like a
- * two-dimensional array. Each row corresponds to a type (there are the same
- * number of rows as there are in the swig_type_initial array). Each entry in
- * a column is one of the swig_cast_info structures for that type.
- * The cast_initial array is actually an array of arrays, because each row has
- * a variable number of columns. So to actually build the cast linked list,
- * we find the array of casts associated with the type, and loop through it
- * adding the casts to the list. The one last trick we need to do is making
- * sure the type pointer in the swig_cast_info struct is correct.
- *
- * First off, we lookup the cast->type name to see if it is already loaded.
- * There are three cases to handle:
- * 1) If the cast->type has already been loaded AND the type we are adding
- * casting info to has not been loaded (it is in this module), THEN we
- * replace the cast->type pointer with the type pointer that has already
- * been loaded.
- * 2) If BOTH types (the one we are adding casting info to, and the
- * cast->type) are loaded, THEN the cast info has already been loaded by
- * the previous module so we just ignore it.
- * 3) Finally, if cast->type has not already been loaded, then we add that
- * swig_cast_info to the linked list (because the cast->type) pointer will
- * be correct.
- * ----------------------------------------------------------------------------- */
-
-#ifdef __cplusplus
-extern "C" {
-#if 0
-} /* c-mode */
-#endif
-#endif
-
-#if 0
-#define SWIGRUNTIME_DEBUG
-#endif
-
-
-SWIGRUNTIME void
-SWIG_InitializeModule(void *clientdata) {
- size_t i;
- swig_module_info *module_head, *iter;
- int found, init;
-
- clientdata = clientdata;
-
- /* check to see if the circular list has been setup, if not, set it up */
- if (swig_module.next==0) {
- /* Initialize the swig_module */
- swig_module.type_initial = swig_type_initial;
- swig_module.cast_initial = swig_cast_initial;
- swig_module.next = &swig_module;
- init = 1;
- } else {
- init = 0;
- }
-
- /* Try and load any already created modules */
- module_head = SWIG_GetModule(clientdata);
- if (!module_head) {
- /* This is the first module loaded for this interpreter */
- /* so set the swig module into the interpreter */
- SWIG_SetModule(clientdata, &swig_module);
- module_head = &swig_module;
- } else {
- /* the interpreter has loaded a SWIG module, but has it loaded this one? */
- found=0;
- iter=module_head;
- do {
- if (iter==&swig_module) {
- found=1;
- break;
- }
- iter=iter->next;
- } while (iter!= module_head);
-
- /* if the is found in the list, then all is done and we may leave */
- if (found) return;
- /* otherwise we must add out module into the list */
- swig_module.next = module_head->next;
- module_head->next = &swig_module;
- }
-
- /* When multiple interpeters are used, a module could have already been initialized in
- a different interpreter, but not yet have a pointer in this interpreter.
- In this case, we do not want to continue adding types... everything should be
- set up already */
- if (init == 0) return;
-
- /* Now work on filling in swig_module.types */
-#ifdef SWIGRUNTIME_DEBUG
- printf("SWIG_InitializeModule: size %d\n", swig_module.size);
-#endif
- for (i = 0; i < swig_module.size; ++i) {
- swig_type_info *type = 0;
- swig_type_info *ret;
- swig_cast_info *cast;
-
-#ifdef SWIGRUNTIME_DEBUG
- printf("SWIG_InitializeModule: type %d %s\n", i, swig_module.type_initial[i]->name);
-#endif
-
- /* if there is another module already loaded */
- if (swig_module.next != &swig_module) {
- type = SWIG_MangledTypeQueryModule(swig_module.next, &swig_module, swig_module.type_initial[i]->name);
- }
- if (type) {
- /* Overwrite clientdata field */
-#ifdef SWIGRUNTIME_DEBUG
- printf("SWIG_InitializeModule: found type %s\n", type->name);
-#endif
- if (swig_module.type_initial[i]->clientdata) {
- type->clientdata = swig_module.type_initial[i]->clientdata;
-#ifdef SWIGRUNTIME_DEBUG
- printf("SWIG_InitializeModule: found and overwrite type %s \n", type->name);
-#endif
- }
- } else {
- type = swig_module.type_initial[i];
- }
-
- /* Insert casting types */
- cast = swig_module.cast_initial[i];
- while (cast->type) {
- /* Don't need to add information already in the list */
- ret = 0;
-#ifdef SWIGRUNTIME_DEBUG
- printf("SWIG_InitializeModule: look cast %s\n", cast->type->name);
-#endif
- if (swig_module.next != &swig_module) {
- ret = SWIG_MangledTypeQueryModule(swig_module.next, &swig_module, cast->type->name);
-#ifdef SWIGRUNTIME_DEBUG
- if (ret) printf("SWIG_InitializeModule: found cast %s\n", ret->name);
-#endif
- }
- if (ret) {
- if (type == swig_module.type_initial[i]) {
-#ifdef SWIGRUNTIME_DEBUG
- printf("SWIG_InitializeModule: skip old type %s\n", ret->name);
-#endif
- cast->type = ret;
- ret = 0;
- } else {
- /* Check for casting already in the list */
- swig_cast_info *ocast = SWIG_TypeCheck(ret->name, type);
-#ifdef SWIGRUNTIME_DEBUG
- if (ocast) printf("SWIG_InitializeModule: skip old cast %s\n", ret->name);
-#endif
- if (!ocast) ret = 0;
- }
- }
-
- if (!ret) {
-#ifdef SWIGRUNTIME_DEBUG
- printf("SWIG_InitializeModule: adding cast %s\n", cast->type->name);
-#endif
- if (type->cast) {
- type->cast->prev = cast;
- cast->next = type->cast;
- }
- type->cast = cast;
- }
- cast++;
- }
- /* Set entry in modules->types array equal to the type */
- swig_module.types[i] = type;
- }
- swig_module.types[i] = 0;
-
-#ifdef SWIGRUNTIME_DEBUG
- printf("**** SWIG_InitializeModule: Cast List ******\n");
- for (i = 0; i < swig_module.size; ++i) {
- int j = 0;
- swig_cast_info *cast = swig_module.cast_initial[i];
- printf("SWIG_InitializeModule: type %d %s\n", i, swig_module.type_initial[i]->name);
- while (cast->type) {
- printf("SWIG_InitializeModule: cast type %s\n", cast->type->name);
- cast++;
- ++j;
- }
- printf("---- Total casts: %d\n",j);
- }
- printf("**** SWIG_InitializeModule: Cast List ******\n");
-#endif
-}
-
-/* This function will propagate the clientdata field of type to
-* any new swig_type_info structures that have been added into the list
-* of equivalent types. It is like calling
-* SWIG_TypeClientData(type, clientdata) a second time.
-*/
-SWIGRUNTIME void
-SWIG_PropagateClientData(void) {
- size_t i;
- swig_cast_info *equiv;
- static int init_run = 0;
-
- if (init_run) return;
- init_run = 1;
-
- for (i = 0; i < swig_module.size; i++) {
- if (swig_module.types[i]->clientdata) {
- equiv = swig_module.types[i]->cast;
- while (equiv) {
- if (!equiv->converter) {
- if (equiv->type && !equiv->type->clientdata)
- SWIG_TypeClientData(equiv->type, swig_module.types[i]->clientdata);
- }
- equiv = equiv->next;
- }
- }
- }
-}
-
-#ifdef __cplusplus
-#if 0
-{
- /* c-mode */
-#endif
-}
-#endif
-
-
-
-#ifdef __cplusplus
-extern "C" {
-#endif
-
- /* Python-specific SWIG API */
-#define SWIG_newvarlink() SWIG_Python_newvarlink()
-#define SWIG_addvarlink(p, name, get_attr, set_attr) SWIG_Python_addvarlink(p, name, get_attr, set_attr)
-#define SWIG_InstallConstants(d, constants) SWIG_Python_InstallConstants(d, constants)
-
- /* -----------------------------------------------------------------------------
- * global variable support code.
- * ----------------------------------------------------------------------------- */
-
- typedef struct swig_globalvar {
- char *name; /* Name of global variable */
- PyObject *(*get_attr)(void); /* Return the current value */
- int (*set_attr)(PyObject *); /* Set the value */
- struct swig_globalvar *next;
- } swig_globalvar;
-
- typedef struct swig_varlinkobject {
- PyObject_HEAD
- swig_globalvar *vars;
- } swig_varlinkobject;
-
- SWIGINTERN PyObject *
- swig_varlink_repr(swig_varlinkobject *SWIGUNUSEDPARM(v)) {
-#if PY_VERSION_HEX >= 0x03000000
- return PyUnicode_InternFromString("<Swig global variables>");
-#else
- return PyString_FromString("<Swig global variables>");
-#endif
- }
-
- SWIGINTERN PyObject *
- swig_varlink_str(swig_varlinkobject *v) {
-#if PY_VERSION_HEX >= 0x03000000
- PyObject *str = PyUnicode_InternFromString("(");
- PyObject *tail;
- PyObject *joined;
- swig_globalvar *var;
- for (var = v->vars; var; var=var->next) {
- tail = PyUnicode_FromString(var->name);
- joined = PyUnicode_Concat(str, tail);
- Py_DecRef(str);
- Py_DecRef(tail);
- str = joined;
- if (var->next) {
- tail = PyUnicode_InternFromString(", ");
- joined = PyUnicode_Concat(str, tail);
- Py_DecRef(str);
- Py_DecRef(tail);
- str = joined;
- }
- }
- tail = PyUnicode_InternFromString(")");
- joined = PyUnicode_Concat(str, tail);
- Py_DecRef(str);
- Py_DecRef(tail);
- str = joined;
-#else
- PyObject *str = PyString_FromString("(");
- swig_globalvar *var;
- for (var = v->vars; var; var=var->next) {
- PyString_ConcatAndDel(&str,PyString_FromString(var->name));
- if (var->next) PyString_ConcatAndDel(&str,PyString_FromString(", "));
- }
- PyString_ConcatAndDel(&str,PyString_FromString(")"));
-#endif
- return str;
- }
-
- SWIGINTERN int
- swig_varlink_print(swig_varlinkobject *v, FILE *fp, int SWIGUNUSEDPARM(flags)) {
- char *tmp;
- PyObject *str = swig_varlink_str(v);
- fprintf(fp,"Swig global variables ");
- fprintf(fp,"%s\n", tmp = SWIG_Python_str_AsChar(str));
- SWIG_Python_str_DelForPy3(tmp);
- Py_DECREF(str);
- return 0;
- }
-
- SWIGINTERN void
- swig_varlink_dealloc(swig_varlinkobject *v) {
- swig_globalvar *var = v->vars;
- while (var) {
- swig_globalvar *n = var->next;
- free(var->name);
- free(var);
- var = n;
- }
- }
-
- SWIGINTERN PyObject *
- swig_varlink_getattr(swig_varlinkobject *v, char *n) {
- PyObject *res = NULL;
- swig_globalvar *var = v->vars;
- while (var) {
- if (strcmp(var->name,n) == 0) {
- res = (*var->get_attr)();
- break;
- }
- var = var->next;
- }
- if (res == NULL && !PyErr_Occurred()) {
- PyErr_SetString(PyExc_NameError,"Unknown C global variable");
- }
- return res;
- }
-
- SWIGINTERN int
- swig_varlink_setattr(swig_varlinkobject *v, char *n, PyObject *p) {
- int res = 1;
- swig_globalvar *var = v->vars;
- while (var) {
- if (strcmp(var->name,n) == 0) {
- res = (*var->set_attr)(p);
- break;
- }
- var = var->next;
- }
- if (res == 1 && !PyErr_Occurred()) {
- PyErr_SetString(PyExc_NameError,"Unknown C global variable");
- }
- return res;
- }
-
- SWIGINTERN PyTypeObject*
- swig_varlink_type(void) {
- static char varlink__doc__[] = "Swig var link object";
- static PyTypeObject varlink_type;
- static int type_init = 0;
- if (!type_init) {
- const PyTypeObject tmp = {
- /* PyObject header changed in Python 3 */
-#if PY_VERSION_HEX >= 0x03000000
- PyVarObject_HEAD_INIT(NULL, 0)
-#else
- PyObject_HEAD_INIT(NULL)
- 0, /* ob_size */
-#endif
- (char *)"swigvarlink", /* tp_name */
- sizeof(swig_varlinkobject), /* tp_basicsize */
- 0, /* tp_itemsize */
- (destructor) swig_varlink_dealloc, /* tp_dealloc */
- (printfunc) swig_varlink_print, /* tp_print */
- (getattrfunc) swig_varlink_getattr, /* tp_getattr */
- (setattrfunc) swig_varlink_setattr, /* tp_setattr */
- 0, /* tp_compare */
- (reprfunc) swig_varlink_repr, /* tp_repr */
- 0, /* tp_as_number */
- 0, /* tp_as_sequence */
- 0, /* tp_as_mapping */
- 0, /* tp_hash */
- 0, /* tp_call */
- (reprfunc) swig_varlink_str, /* tp_str */
- 0, /* tp_getattro */
- 0, /* tp_setattro */
- 0, /* tp_as_buffer */
- 0, /* tp_flags */
- varlink__doc__, /* tp_doc */
- 0, /* tp_traverse */
- 0, /* tp_clear */
- 0, /* tp_richcompare */
- 0, /* tp_weaklistoffset */
-#if PY_VERSION_HEX >= 0x02020000
- 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0, /* tp_iter -> tp_weaklist */
-#endif
-#if PY_VERSION_HEX >= 0x02030000
- 0, /* tp_del */
-#endif
-#if PY_VERSION_HEX >= 0x02060000
- 0, /* tp_version */
-#endif
-#ifdef COUNT_ALLOCS
- 0,0,0,0 /* tp_alloc -> tp_next */
-#endif
- };
- varlink_type = tmp;
- type_init = 1;
-#if PY_VERSION_HEX < 0x02020000
- varlink_type.ob_type = &PyType_Type;
-#else
- if (PyType_Ready(&varlink_type) < 0)
- return NULL;
-#endif
- }
- return &varlink_type;
- }
-
- /* Create a variable linking object for use later */
- SWIGINTERN PyObject *
- SWIG_Python_newvarlink(void) {
- swig_varlinkobject *result = PyObject_NEW(swig_varlinkobject, swig_varlink_type());
- if (result) {
- result->vars = 0;
- }
- return ((PyObject*) result);
- }
-
- SWIGINTERN void
- SWIG_Python_addvarlink(PyObject *p, char *name, PyObject *(*get_attr)(void), int (*set_attr)(PyObject *p)) {
- swig_varlinkobject *v = (swig_varlinkobject *) p;
- swig_globalvar *gv = (swig_globalvar *) malloc(sizeof(swig_globalvar));
- if (gv) {
- size_t size = strlen(name)+1;
- gv->name = (char *)malloc(size);
- if (gv->name) {
- strncpy(gv->name,name,size);
- gv->get_attr = get_attr;
- gv->set_attr = set_attr;
- gv->next = v->vars;
- }
- }
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diff --git a/src/_HTSeq.c b/src/_HTSeq.c
deleted file mode 100644
index d6e4846..0000000
--- a/src/_HTSeq.c
+++ /dev/null
@@ -1,34058 +0,0 @@
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- * ctypedef npy_int32 int32_t
- */
-typedef npy_int8 __pyx_t_5numpy_int8_t;
-
-/* "numpy.pxd":720
- *
- * ctypedef npy_int8 int8_t
- * ctypedef npy_int16 int16_t # <<<<<<<<<<<<<<
- * ctypedef npy_int32 int32_t
- * ctypedef npy_int64 int64_t
- */
-typedef npy_int16 __pyx_t_5numpy_int16_t;
-
-/* "numpy.pxd":721
- * ctypedef npy_int8 int8_t
- * ctypedef npy_int16 int16_t
- * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<<
- * ctypedef npy_int64 int64_t
- * #ctypedef npy_int96 int96_t
- */
-typedef npy_int32 __pyx_t_5numpy_int32_t;
-
-/* "numpy.pxd":722
- * ctypedef npy_int16 int16_t
- * ctypedef npy_int32 int32_t
- * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<<
- * #ctypedef npy_int96 int96_t
- * #ctypedef npy_int128 int128_t
- */
-typedef npy_int64 __pyx_t_5numpy_int64_t;
-
-/* "numpy.pxd":726
- * #ctypedef npy_int128 int128_t
- *
- * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<<
- * ctypedef npy_uint16 uint16_t
- * ctypedef npy_uint32 uint32_t
- */
-typedef npy_uint8 __pyx_t_5numpy_uint8_t;
-
-/* "numpy.pxd":727
- *
- * ctypedef npy_uint8 uint8_t
- * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<<
- * ctypedef npy_uint32 uint32_t
- * ctypedef npy_uint64 uint64_t
- */
-typedef npy_uint16 __pyx_t_5numpy_uint16_t;
-
-/* "numpy.pxd":728
- * ctypedef npy_uint8 uint8_t
- * ctypedef npy_uint16 uint16_t
- * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<<
- * ctypedef npy_uint64 uint64_t
- * #ctypedef npy_uint96 uint96_t
- */
-typedef npy_uint32 __pyx_t_5numpy_uint32_t;
-
-/* "numpy.pxd":729
- * ctypedef npy_uint16 uint16_t
- * ctypedef npy_uint32 uint32_t
- * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<<
- * #ctypedef npy_uint96 uint96_t
- * #ctypedef npy_uint128 uint128_t
- */
-typedef npy_uint64 __pyx_t_5numpy_uint64_t;
-
-/* "numpy.pxd":733
- * #ctypedef npy_uint128 uint128_t
- *
- * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<<
- * ctypedef npy_float64 float64_t
- * #ctypedef npy_float80 float80_t
- */
-typedef npy_float32 __pyx_t_5numpy_float32_t;
-
-/* "numpy.pxd":734
- *
- * ctypedef npy_float32 float32_t
- * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<<
- * #ctypedef npy_float80 float80_t
- * #ctypedef npy_float128 float128_t
- */
-typedef npy_float64 __pyx_t_5numpy_float64_t;
-
-/* "numpy.pxd":743
- * # The int types are mapped a bit surprising --
- * # numpy.int corresponds to 'l' and numpy.long to 'q'
- * ctypedef npy_long int_t # <<<<<<<<<<<<<<
- * ctypedef npy_longlong long_t
- * ctypedef npy_longlong longlong_t
- */
-typedef npy_long __pyx_t_5numpy_int_t;
-
-/* "numpy.pxd":744
- * # numpy.int corresponds to 'l' and numpy.long to 'q'
- * ctypedef npy_long int_t
- * ctypedef npy_longlong long_t # <<<<<<<<<<<<<<
- * ctypedef npy_longlong longlong_t
- *
- */
-typedef npy_longlong __pyx_t_5numpy_long_t;
-
-/* "numpy.pxd":745
- * ctypedef npy_long int_t
- * ctypedef npy_longlong long_t
- * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<<
- *
- * ctypedef npy_ulong uint_t
- */
-typedef npy_longlong __pyx_t_5numpy_longlong_t;
-
-/* "numpy.pxd":747
- * ctypedef npy_longlong longlong_t
- *
- * ctypedef npy_ulong uint_t # <<<<<<<<<<<<<<
- * ctypedef npy_ulonglong ulong_t
- * ctypedef npy_ulonglong ulonglong_t
- */
-typedef npy_ulong __pyx_t_5numpy_uint_t;
-
-/* "numpy.pxd":748
- *
- * ctypedef npy_ulong uint_t
- * ctypedef npy_ulonglong ulong_t # <<<<<<<<<<<<<<
- * ctypedef npy_ulonglong ulonglong_t
- *
- */
-typedef npy_ulonglong __pyx_t_5numpy_ulong_t;
-
-/* "numpy.pxd":749
- * ctypedef npy_ulong uint_t
- * ctypedef npy_ulonglong ulong_t
- * ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<<
- *
- * ctypedef npy_intp intp_t
- */
-typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t;
-
-/* "numpy.pxd":751
- * ctypedef npy_ulonglong ulonglong_t
- *
- * ctypedef npy_intp intp_t # <<<<<<<<<<<<<<
- * ctypedef npy_uintp uintp_t
- *
- */
-typedef npy_intp __pyx_t_5numpy_intp_t;
-
-/* "numpy.pxd":752
- *
- * ctypedef npy_intp intp_t
- * ctypedef npy_uintp uintp_t # <<<<<<<<<<<<<<
- *
- * ctypedef npy_double float_t
- */
-typedef npy_uintp __pyx_t_5numpy_uintp_t;
-
-/* "numpy.pxd":754
- * ctypedef npy_uintp uintp_t
- *
- * ctypedef npy_double float_t # <<<<<<<<<<<<<<
- * ctypedef npy_double double_t
- * ctypedef npy_longdouble longdouble_t
- */
-typedef npy_double __pyx_t_5numpy_float_t;
-
-/* "numpy.pxd":755
- *
- * ctypedef npy_double float_t
- * ctypedef npy_double double_t # <<<<<<<<<<<<<<
- * ctypedef npy_longdouble longdouble_t
- *
- */
-typedef npy_double __pyx_t_5numpy_double_t;
-
-/* "numpy.pxd":756
- * ctypedef npy_double float_t
- * ctypedef npy_double double_t
- * ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<<
- *
- * ctypedef npy_cfloat cfloat_t
- */
-typedef npy_longdouble __pyx_t_5numpy_longdouble_t;
-
-#if CYTHON_CCOMPLEX
- #ifdef __cplusplus
- typedef ::std::complex< float > __pyx_t_float_complex;
- #else
- typedef float _Complex __pyx_t_float_complex;
- #endif
-#else
- typedef struct { float real, imag; } __pyx_t_float_complex;
-#endif
-
-#if CYTHON_CCOMPLEX
- #ifdef __cplusplus
- typedef ::std::complex< double > __pyx_t_double_complex;
- #else
- typedef double _Complex __pyx_t_double_complex;
- #endif
-#else
- typedef struct { double real, imag; } __pyx_t_double_complex;
-#endif
-
-/*--- Type declarations ---*/
-struct __pyx_obj_5HTSeq_6_HTSeq_Alignment;
-struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal;
-struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment;
-struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation;
-struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval;
-struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition;
-struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray;
-struct __pyx_obj_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__;
-struct __pyx_obj_5HTSeq_6_HTSeq_Sequence;
-struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities;
-struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment;
-struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector;
-
-/* "numpy.pxd":758
- * ctypedef npy_longdouble longdouble_t
- *
- * ctypedef npy_cfloat cfloat_t # <<<<<<<<<<<<<<
- * ctypedef npy_cdouble cdouble_t
- * ctypedef npy_clongdouble clongdouble_t
- */
-typedef npy_cfloat __pyx_t_5numpy_cfloat_t;
-
-/* "numpy.pxd":759
- *
- * ctypedef npy_cfloat cfloat_t
- * ctypedef npy_cdouble cdouble_t # <<<<<<<<<<<<<<
- * ctypedef npy_clongdouble clongdouble_t
- *
- */
-typedef npy_cdouble __pyx_t_5numpy_cdouble_t;
-
-/* "numpy.pxd":760
- * ctypedef npy_cfloat cfloat_t
- * ctypedef npy_cdouble cdouble_t
- * ctypedef npy_clongdouble clongdouble_t # <<<<<<<<<<<<<<
- *
- * ctypedef npy_cdouble complex_t
- */
-typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t;
-
-/* "numpy.pxd":762
- * ctypedef npy_clongdouble clongdouble_t
- *
- * ctypedef npy_cdouble complex_t # <<<<<<<<<<<<<<
- *
- * cdef inline object PyArray_MultiIterNew1(a):
- */
-typedef npy_cdouble __pyx_t_5numpy_complex_t;
-struct __pyx_opt_args_5HTSeq_6_HTSeq_8Sequence_trim_left_end;
-struct __pyx_opt_args_5HTSeq_6_HTSeq_8Sequence_trim_right_end;
-struct __pyx_opt_args_5HTSeq_6_HTSeq_21SequenceWithQualities_trim_left_end_with_quals;
-struct __pyx_opt_args_5HTSeq_6_HTSeq_21SequenceWithQualities_trim_right_end_with_quals;
-struct __pyx_opt_args_5HTSeq_6_HTSeq_parse_cigar;
-struct __pyx_opt_args_5HTSeq_6_HTSeq_build_cigar_list;
-
-/* "HTSeq/_HTSeq.pxd":25
- * cpdef Sequence get_reverse_complement( self )
- * cpdef object add_bases_to_count_array( Sequence self, numpy.ndarray count_array_ )
- * cpdef Sequence trim_left_end( Sequence self, Sequence pattern, float mismatch_prop = ? ) # <<<<<<<<<<<<<<
- * cpdef Sequence trim_right_end( Sequence self, Sequence pattern, float mismatch_prop = ? )
- *
- */
-struct __pyx_opt_args_5HTSeq_6_HTSeq_8Sequence_trim_left_end {
- int __pyx_n;
- float mismatch_prop;
-};
-
-/* "HTSeq/_HTSeq.pxd":26
- * cpdef object add_bases_to_count_array( Sequence self, numpy.ndarray count_array_ )
- * cpdef Sequence trim_left_end( Sequence self, Sequence pattern, float mismatch_prop = ? )
- * cpdef Sequence trim_right_end( Sequence self, Sequence pattern, float mismatch_prop = ? ) # <<<<<<<<<<<<<<
- *
- *
- */
-struct __pyx_opt_args_5HTSeq_6_HTSeq_8Sequence_trim_right_end {
- int __pyx_n;
- float mismatch_prop;
-};
-
-/* "HTSeq/_HTSeq.pxd":36
- * cdef _fill_qual_arr( SequenceWithQualities self )
- * cpdef object add_qual_to_count_array( SequenceWithQualities self, numpy.ndarray count_array_ )
- * cpdef SequenceWithQualities trim_left_end_with_quals( SequenceWithQualities self, # <<<<<<<<<<<<<<
- * Sequence pattern, int max_mm_qual = ? )
- * cpdef SequenceWithQualities trim_right_end_with_quals( SequenceWithQualities self,
- */
-struct __pyx_opt_args_5HTSeq_6_HTSeq_21SequenceWithQualities_trim_left_end_with_quals {
- int __pyx_n;
- int max_mm_qual;
-};
-
-/* "HTSeq/_HTSeq.pxd":38
- * cpdef SequenceWithQualities trim_left_end_with_quals( SequenceWithQualities self,
- * Sequence pattern, int max_mm_qual = ? )
- * cpdef SequenceWithQualities trim_right_end_with_quals( SequenceWithQualities self, # <<<<<<<<<<<<<<
- * Sequence pattern, int max_mm_qual = ? )
- *
- */
-struct __pyx_opt_args_5HTSeq_6_HTSeq_21SequenceWithQualities_trim_right_end_with_quals {
- int __pyx_n;
- int max_mm_qual;
-};
-
-/* "HTSeq/_HTSeq.pyx":1110
- * _re_cigar_codes = re.compile( '([A-Z])' )
- *
- * cpdef list parse_cigar( str cigar_string, int ref_left = 0, str chrom = "", str strand = "." ): # <<<<<<<<<<<<<<
- * cdef list split_cigar, cl
- * cdef int size
- */
-struct __pyx_opt_args_5HTSeq_6_HTSeq_parse_cigar {
- int __pyx_n;
- int ref_left;
- PyObject *chrom;
- PyObject *strand;
-};
-
-/* "HTSeq/_HTSeq.pyx":1127
- * return build_cigar_list( cl, ref_left, chrom, strand )
- *
- * cpdef list build_cigar_list( list cigar_pairs, int ref_left = 0, str chrom = "", str strand = "." ): # <<<<<<<<<<<<<<
- * cdef list split_cigar, res
- * cdef int rpos, qpos, size
- */
-struct __pyx_opt_args_5HTSeq_6_HTSeq_build_cigar_list {
- int __pyx_n;
- int ref_left;
- PyObject *chrom;
- PyObject *strand;
-};
-
-/* "HTSeq/_HTSeq.pxd":42
- *
- *
- * cdef class Alignment( object ): # <<<<<<<<<<<<<<
- * cdef public SequenceWithQualities _read
- * cdef public GenomicInterval iv
- */
-struct __pyx_obj_5HTSeq_6_HTSeq_Alignment {
- PyObject_HEAD
- struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *_read;
- struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *iv;
-};
-
-
-/* "HTSeq/_HTSeq.pxd":46
- * cdef public GenomicInterval iv
- *
- * cdef class AlignmentWithSequenceReversal( Alignment ): # <<<<<<<<<<<<<<
- * cdef public SequenceWithQualities read_as_aligned
- * cdef public SequenceWithQualities _read_as_sequenced
- */
-struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal {
- struct __pyx_obj_5HTSeq_6_HTSeq_Alignment __pyx_base;
- struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *read_as_aligned;
- struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *_read_as_sequenced;
-};
-
-
-/* "HTSeq/_HTSeq.pyx":1034
- *
- *
- * cdef class BowtieAlignment( AlignmentWithSequenceReversal ): # <<<<<<<<<<<<<<
- *
- * """When reading in a Bowtie file, objects of the class BowtieAlignment
- */
-struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment {
- struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal __pyx_base;
- PyObject *reserved;
- PyObject *substitutions;
-};
-
-
-/* "HTSeq/_HTSeq.pyx":1067
- * 'P': 'padded' }
- *
- * cdef class CigarOperation( object ): # <<<<<<<<<<<<<<
- *
- * cdef public str type
- */
-struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation {
- PyObject_HEAD
- PyObject *type;
- int size;
- struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *ref_iv;
- int query_from;
- int query_to;
-};
-
-
-/* "HTSeq/_HTSeq.pxd":3
- * cimport numpy
- *
- * cdef class GenomicInterval: # <<<<<<<<<<<<<<
- *
- * cdef public str chrom
- */
-struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval {
- PyObject_HEAD
- struct __pyx_vtabstruct_5HTSeq_6_HTSeq_GenomicInterval *__pyx_vtab;
- PyObject *chrom;
- long start;
- long end;
- PyObject *_strand;
-};
-
-
-/* "HTSeq/_HTSeq.pxd":15
- * cpdef extend_to_include( GenomicInterval self, GenomicInterval iv )
- *
- * cdef class GenomicPosition( GenomicInterval ): # <<<<<<<<<<<<<<
- * pass
- *
- */
-struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition {
- struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval __pyx_base;
-};
-
-
-/* "HTSeq/_HTSeq.pyx":478
- * return cv
- *
- * cdef class GenomicArray( object ): # <<<<<<<<<<<<<<
- *
- * cdef public dict chrom_vectors
- */
-struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray {
- PyObject_HEAD
- PyObject *chrom_vectors;
- int stranded;
- PyObject *typecode;
- int auto_add_chroms;
- PyObject *storage;
- PyObject *memmap_dir;
-};
-
-
-/* "HTSeq/_HTSeq.pyx":437
- * raise TypeError, "Illegal index type"
- *
- * def __iadd__( self, value ): # <<<<<<<<<<<<<<
- * if not self.is_vector_of_sets:
- * self.array[ self.iv.start - self.offset : self.iv.end - self.offset ].__iadd__( value )
- */
-struct __pyx_obj_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__ {
- PyObject_HEAD
- PyObject *__pyx_v_value;
-};
-
-
-/* "HTSeq/_HTSeq.pxd":19
- *
- *
- * cdef class Sequence( object ): # <<<<<<<<<<<<<<
- * cdef public bytes seq
- * cdef public str name
- */
-struct __pyx_obj_5HTSeq_6_HTSeq_Sequence {
- PyObject_HEAD
- struct __pyx_vtabstruct_5HTSeq_6_HTSeq_Sequence *__pyx_vtab;
- PyObject *seq;
- PyObject *name;
- PyObject *descr;
-};
-
-
-/* "HTSeq/_HTSeq.pxd":29
- *
- *
- * cdef class SequenceWithQualities( Sequence ): # <<<<<<<<<<<<<<
- * cdef readonly bytes _qualstr
- * cdef readonly bytes _qualstr_phred
- */
-struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities {
- struct __pyx_obj_5HTSeq_6_HTSeq_Sequence __pyx_base;
- PyObject *_qualstr;
- PyObject *_qualstr_phred;
- PyObject *_qualscale;
- PyObject *_qualarr;
-};
-
-
-/* "HTSeq/_HTSeq.pxd":50
- * cdef public SequenceWithQualities _read_as_sequenced
- *
- * cdef class SAM_Alignment( AlignmentWithSequenceReversal ): # <<<<<<<<<<<<<<
- * cdef public list cigar
- * cdef public int aQual
- */
-struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment {
- struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal __pyx_base;
- PyObject *cigar;
- int aQual;
- struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition *mate_start;
- PyObject *pe_which;
- int inferred_insert_size;
- int proper_pair;
- int not_primary_alignment;
- int failed_platform_qc;
- int pcr_or_optical_duplicate;
- PyObject *original_sam_line;
- int _flag;
- PyObject *optional_fields;
-};
-
-
-/* "HTSeq/_HTSeq.pyx":314
- *
- *
- * cdef class ChromVector( object ): # <<<<<<<<<<<<<<
- *
- * cdef public object array
- */
-struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector {
- PyObject_HEAD
- PyObject *array;
- struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *iv;
- int offset;
- int is_vector_of_sets;
- PyObject *_storage;
-};
-
-
-
-/* "HTSeq/_HTSeq.pyx":26
- * cdef str strand_nostrand = intern( "." )
- *
- * cdef class GenomicInterval: # <<<<<<<<<<<<<<
- *
- * """A GenomicInterval specifies an interval (i.e., a range of
- */
-
-struct __pyx_vtabstruct_5HTSeq_6_HTSeq_GenomicInterval {
- PyObject *(*is_contained_in)(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *, struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *, int __pyx_skip_dispatch);
- PyObject *(*contains)(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *, struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *, int __pyx_skip_dispatch);
- PyObject *(*overlaps)(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *, struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *, int __pyx_skip_dispatch);
- PyObject *(*extend_to_include)(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *, struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *, int __pyx_skip_dispatch);
-};
-static struct __pyx_vtabstruct_5HTSeq_6_HTSeq_GenomicInterval *__pyx_vtabptr_5HTSeq_6_HTSeq_GenomicInterval;
-
-
-/* "HTSeq/_HTSeq.pyx":634
- * base_to_column = { 'A': 0, 'C': 1, 'G': 2, 'T': 3, 'N': 4 }
- *
- * cdef class Sequence( object ): # <<<<<<<<<<<<<<
- * """A Sequence, typically of DNA, with a name.
- * """
- */
-
-struct __pyx_vtabstruct_5HTSeq_6_HTSeq_Sequence {
- struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *(*get_reverse_complement)(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *, int __pyx_skip_dispatch);
- PyObject *(*add_bases_to_count_array)(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *, PyArrayObject *, int __pyx_skip_dispatch);
- struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *(*trim_left_end)(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *, struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *, int __pyx_skip_dispatch, struct __pyx_opt_args_5HTSeq_6_HTSeq_8Sequence_trim_left_end *__pyx_optional_args);
- struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *(*trim_right_end)(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *, struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *, int __pyx_skip_dispatch, struct __pyx_opt_args_5HTSeq_6_HTSeq_8Sequence_trim_right_end *__pyx_optional_args);
-};
-static struct __pyx_vtabstruct_5HTSeq_6_HTSeq_Sequence *__pyx_vtabptr_5HTSeq_6_HTSeq_Sequence;
-
-
-/* "HTSeq/_HTSeq.pyx":754
- *
- *
- * cdef class SequenceWithQualities( Sequence ): # <<<<<<<<<<<<<<
- * """A Sequence with base-call quality scores.
- * It now has property 'qual', an integer NumPy array of Sanger/Phred
- */
-
-struct __pyx_vtabstruct_5HTSeq_6_HTSeq_SequenceWithQualities {
- struct __pyx_vtabstruct_5HTSeq_6_HTSeq_Sequence __pyx_base;
- PyObject *(*_fill_qual_arr)(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *);
- PyObject *(*add_qual_to_count_array)(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *, PyArrayObject *, int __pyx_skip_dispatch);
- struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *(*trim_left_end_with_quals)(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *, struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *, int __pyx_skip_dispatch, struct __pyx_opt_args_5HTSeq_6_HTSeq_21SequenceWithQualities_trim_left_end_with_quals *__pyx_optional_args);
- struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *(*trim_right_end_with_quals)(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *, struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *, int __pyx_skip_dispatch, struct __pyx_opt_args_5HTSeq_6_HTSeq_21SequenceWithQualities_trim_right_end_with_quals *__pyx_optional_args);
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-static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *); /*proto*/
-static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *, PyObject *); /*proto*/
-static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *, PyObject *, PyObject *); /*proto*/
-static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *, PyObject *, PyObject *, PyObject *); /*proto*/
-static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *, PyObject *, PyObject *, PyObject *, PyObject *); /*proto*/
-static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *, char *, char *, int *); /*proto*/
-static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *, PyObject *); /*proto*/
-static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *); /*proto*/
-
-/* Module declarations from 'HTSeq._HTSeq' */
-static PyTypeObject *__pyx_ptype_5HTSeq_6_HTSeq_GenomicInterval = 0;
-static PyTypeObject *__pyx_ptype_5HTSeq_6_HTSeq_GenomicPosition = 0;
-static PyTypeObject *__pyx_ptype_5HTSeq_6_HTSeq_Sequence = 0;
-static PyTypeObject *__pyx_ptype_5HTSeq_6_HTSeq_SequenceWithQualities = 0;
-static PyTypeObject *__pyx_ptype_5HTSeq_6_HTSeq_Alignment = 0;
-static PyTypeObject *__pyx_ptype_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal = 0;
-static PyTypeObject *__pyx_ptype_5HTSeq_6_HTSeq_SAM_Alignment = 0;
-static PyTypeObject *__pyx_ptype_5HTSeq_6_HTSeq_ChromVector = 0;
-static PyTypeObject *__pyx_ptype_5HTSeq_6_HTSeq_GenomicArray = 0;
-static PyTypeObject *__pyx_ptype_5HTSeq_6_HTSeq_BowtieAlignment = 0;
-static PyTypeObject *__pyx_ptype_5HTSeq_6_HTSeq_CigarOperation = 0;
-static PyTypeObject *__pyx_ptype_5HTSeq_6_HTSeq___pyx_scope_struct____iadd__ = 0;
-static PyObject *__pyx_v_5HTSeq_6_HTSeq_strand_plus = 0;
-static PyObject *__pyx_v_5HTSeq_6_HTSeq_strand_minus = 0;
-static PyObject *__pyx_v_5HTSeq_6_HTSeq_strand_nostrand = 0;
-static PyObject *__pyx_v_5HTSeq_6_HTSeq__translation_table_for_complementation = 0;
-static PyObject *__pyx_f_5HTSeq_6_HTSeq_reverse_complement(PyObject *, int __pyx_skip_dispatch); /*proto*/
-static PyObject *__pyx_f_5HTSeq_6_HTSeq_parse_cigar(PyObject *, int __pyx_skip_dispatch, struct __pyx_opt_args_5HTSeq_6_HTSeq_parse_cigar *__pyx_optional_args); /*proto*/
-static PyObject *__pyx_f_5HTSeq_6_HTSeq_build_cigar_list(PyObject *, int __pyx_skip_dispatch, struct __pyx_opt_args_5HTSeq_6_HTSeq_build_cigar_list *__pyx_optional_args); /*proto*/
-static PyObject *__pyx_f_5HTSeq_6_HTSeq__parse_SAM_optional_field_value(PyObject *); /*proto*/
-static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_5numpy_int_t = { "int_t", NULL, sizeof(__pyx_t_5numpy_int_t), 'I' };
-#define __Pyx_MODULE_NAME "HTSeq._HTSeq"
-int __pyx_module_is_main_HTSeq___HTSeq = 0;
-
-/* Implementation of 'HTSeq._HTSeq' */
-static PyObject *__pyx_builtin_property;
-static PyObject *__pyx_builtin_enumerate;
-static PyObject *__pyx_builtin_ValueError;
-static PyObject *__pyx_builtin_NotImplementedError;
-static PyObject *__pyx_builtin_TypeError;
-static PyObject *__pyx_builtin_IndexError;
-static PyObject *__pyx_builtin_KeyError;
-static PyObject *__pyx_builtin_open;
-static PyObject *__pyx_builtin_xrange;
-static PyObject *__pyx_builtin_chr;
-static PyObject *__pyx_builtin_ord;
-static PyObject *__pyx_builtin_ImportError;
-static PyObject *__pyx_builtin_range;
-static PyObject *__pyx_builtin_RuntimeError;
-static char __pyx_k_2[] = "start is larger than end";
-static char __pyx_k_3[] = "Strand must be'+', '-', or '.'.";
-static char __pyx_k_4[] = "<%s object '%s', [%d,%s), strand '%s'>";
-static char __pyx_k_5[] = "%s:[%d,%s)/%s";
-static char __pyx_k_6[] = "GenomicInterval_xrange";
-static char __pyx_k_7[] = "GenomicInterval_xranged";
-static char __pyx_k_8[] = "Cannot extend an interval to include None.";
-static char __pyx_k_9[] = "Cannot extend an interval to include an interval on another chromosome.";
-static char __pyx_k_10[] = "Cannot extend an interval to include an interval on another strand.";
-static char __pyx_k_11[] = ".";
-static char __pyx_k_12[] = "<%s object '%s':%d, strand '%s'>";
-static char __pyx_k_13[] = "%s:%d/%s";
-static char __pyx_k_14[] = "";
-static char __pyx_k_15[] = ".nmm";
-static char __pyx_k_16[] = "w+";
-static char __pyx_k_17[] = "Illegal storage mode.";
-static char __pyx_k_18[] = "Cannot subset to zero-length interval.";
-static char __pyx_k_19[] = "start too small";
-static char __pyx_k_20[] = "stop too large";
-static char __pyx_k_21[] = "Illegal index type";
-static char __pyx_k_22[] = "Required assignment signature not yet implemented.";
-static char __pyx_k_23[] = "Start of interval is after its end.";
-static char __pyx_k_24[] = "Cannot assign to zero-length interval.";
-static char __pyx_k_25[] = "Chromosome name mismatch.";
-static char __pyx_k_26[] = "Strand mismatch.";
-static char __pyx_k_27[] = "HTSeq._HTSeq";
-static char __pyx_k_28[] = "<%s object, %s, %s>";
-static char __pyx_k_29[] = "_ChromVector_unpickle";
-static char __pyx_k_30[] = "Automatic adding of chromosomes can ";
-static char __pyx_k_31[] = " only be used with storage type 'StepVector'.";
-static char __pyx_k_32[] = "Indefinite-length chromosomes can ";
-static char __pyx_k_33[] = "'chroms' must be a list or a dict or 'auto'.";
-static char __pyx_k_34[] = "Non-stranded index used for stranded GenomicArray.";
-static char __pyx_k_35[] = "Illegal index type.";
-static char __pyx_k_37[] = "+";
-static char __pyx_k_38[] = "-";
-static char __pyx_k_39[] = "_GenomicArray_unpickle";
-static char __pyx_k_40[] = "Strand specified in unstranded GenomicArray.";
-static char __pyx_k_41[] = "Strand must be specified for stranded GenomicArray.";
-static char __pyx_k_42[] = "track type=bedGraph\n";
-static char __pyx_k_44[] = "track type=bedGraph %s\n";
-static char __pyx_k_45[] = "%s\t%d\t%d\t%f\n";
-static char __pyx_k_47[] = "get_reverse_complement";
-static char __pyx_k_48[] = "<%s object '%s' (length %d)>";
-static char __pyx_k_49[] = "[part]";
-static char __pyx_k_50[] = ">%s %s\n";
-static char __pyx_k_51[] = ">%s\n";
-static char __pyx_k_52[] = "\n";
-static char __pyx_k_53[] = "add_bases_to_count_array";
-static char __pyx_k_54[] = "'count_array' too small for sequence.";
-static char __pyx_k_55[] = "'count_array' has too few columns.";
-static char __pyx_k_56[] = "Illegal base letter encountered.";
-static char __pyx_k_57[] = "'seq' and 'qualstr' do not have the same length.";
-static char __pyx_k_58[] = "Quality string missing.";
-static char __pyx_k_59[] = "Quality string has not the same length as sequence.";
-static char __pyx_k_60[] = "solexa-old";
-static char __pyx_k_61[] = "Illegal quality scale '%s'.";
-static char __pyx_k_62[] = "qual can only be assigned a numpy array of type numpy.int";
-static char __pyx_k_63[] = "assignment to qual with illegal shape";
-static char __pyx_k_64[] = "<%s object '%s'>";
-static char __pyx_k_65[] = "Quality string missing";
-static char __pyx_k_66[] = " ";
-static char __pyx_k_67[] = "@%s %s\n";
-static char __pyx_k_68[] = "@%s\n";
-static char __pyx_k_69[] = "+\n";
-static char __pyx_k_73[] = "add_qual_to_count_array";
-static char __pyx_k_74[] = "Too large quality value encountered.";
-static char __pyx_k_75[] = "trim_left_end_with_quals";
-static char __pyx_k_76[] = "trim_right_end_with_quals";
-static char __pyx_k_77[] = "Paired-end read";
-static char __pyx_k_78[] = "<%s object: %s '%s' aligned to %s>";
-static char __pyx_k_79[] = "<%s object: %s '%s', not aligned>";
-static char __pyx_k_80[] = "\t";
-static char __pyx_k_82[] = "Inconsistent CIGAR operation.";
-static char __pyx_k_83[] = "< %s: %d base(s) %s on ref iv %s, query iv [%d,%d) >";
-static char __pyx_k_84[] = "cigar_operation_names";
-static char __pyx_k_85[] = "Illegal CIGAR string '%s'";
-static char __pyx_k_86[] = "Unknown CIGAR code '%s' encountered.";
-static char __pyx_k_87[] = ":";
-static char __pyx_k_88[] = "Malformatted SAM optional field '%'";
-static char __pyx_k_89[] = "SAM optional field with illegal type letter '%s'";
-static char __pyx_k_90[] = "Please Install PySam to use this functionality (http://code.google.com/p/pysam/)";
-static char __pyx_k_92[] = "cigar_operation_code_dict";
-static char __pyx_k_93[] = "*";
-static char __pyx_k_94[] = "cigar_operation_codes";
-static char __pyx_k_96[] = "SAM line does not contain at least 11 tab-delimited fields.";
-static char __pyx_k_97[] = "=";
-static char __pyx_k_99[] = "Sequence in SAM file contains '=', which is not supported.";
-static char __pyx_k__A[] = "A";
-static char __pyx_k__B[] = "B";
-static char __pyx_k__C[] = "C";
-static char __pyx_k__D[] = "D";
-static char __pyx_k__G[] = "G";
-static char __pyx_k__H[] = "H";
-static char __pyx_k__I[] = "I";
-static char __pyx_k__L[] = "L";
-static char __pyx_k__M[] = "M";
-static char __pyx_k__N[] = "N";
-static char __pyx_k__O[] = "O";
-static char __pyx_k__P[] = "P";
-static char __pyx_k__Q[] = "Q";
-static char __pyx_k__S[] = "S";
-static char __pyx_k__T[] = "T";
-static char __pyx_k__X[] = "X";
-static char __pyx_k__Z[] = "Z";
-static char __pyx_k__a[] = "a";
-static char __pyx_k__b[] = "b";
-static char __pyx_k__c[] = "c";
-static char __pyx_k__d[] = "d";
-static char __pyx_k__f[] = "f";
-static char __pyx_k__g[] = "g";
-static char __pyx_k__h[] = "h";
-static char __pyx_k__i[] = "i";
-static char __pyx_k__j[] = "j";
-static char __pyx_k__l[] = "l";
-static char __pyx_k__q[] = "q";
-static char __pyx_k__t[] = "t";
-static char __pyx_k__w[] = "w";
-static char __pyx_k__x[] = "x";
-static char __pyx_k_101[] = "Sequence in SAM file contains '.', which is not supported.";
-static char __pyx_k_102[] = "Malformed SAM line: RNAME != '*' although flag bit &0x0004 set";
-static char __pyx_k_104[] = "Malformed SAM line: RNAME == '*' although flag bit &0x0004 cleared";
-static char __pyx_k_105[] = "Malformed SAM line: MRNM != '*' although flag bit &0x0008 set";
-static char __pyx_k_107[] = "Malformed SAM line: MRNM == '*' although flag bit &0x0008 cleared";
-static char __pyx_k_108[] = "Malformed SAM line: MRNM == '=' although read is not aligned.";
-static char __pyx_k_112[] = "SAM optional field tag %s not found";
-static char __pyx_k_113[] = "SAM optional field tag %s not unique";
-static char __pyx_k_114[] = "ndarray is not C contiguous";
-static char __pyx_k_116[] = "ndarray is not Fortran contiguous";
-static char __pyx_k_118[] = "Non-native byte order not supported";
-static char __pyx_k_120[] = "unknown dtype code in numpy.pxd (%d)";
-static char __pyx_k_121[] = "Format string allocated too short, see comment in numpy.pxd";
-static char __pyx_k_124[] = "Format string allocated too short.";
-static char __pyx_k_126[] = "The length is calculated as end - start. If you set the length, \n 'start_d' will be preserved, i.e., 'end' is changed, unless the strand\n is '-', in which case 'start' is changed.";
-static char __pyx_k_127[] = "See the class docstring for the meaning of the 'directional start'.\n Note that if you set 'start_d', both the start and the end are changed, \n such the interval gets the requested new directional start and its\n length stays unchanged.";
-static char __pyx_k_128[] = "As GenomicPosition is a subclass of GenomicInterval, 'pos' is actually\n just an alias for 'start_d'.\n ";
-static char __pyx_k_129[] = "GenomicInterval_from_directional";
-static char __pyx_k_130[] = "_make_translation_table_for_complementation";
-static char __pyx_k_131[] = "soft-clipped";
-static char __pyx_k_132[] = "hard-clipped";
-static char __pyx_k_133[] = "([A-Z])";
-static char __pyx_k_135[] = "from_pysam_AlignedRead";
-static char __pyx_k__Zd[] = "Zd";
-static char __pyx_k__Zf[] = "Zf";
-static char __pyx_k__Zg[] = "Zg";
-static char __pyx_k__iv[] = "iv";
-static char __pyx_k__os[] = "os";
-static char __pyx_k__re[] = "re";
-static char __pyx_k__se[] = "se";
-static char __pyx_k__Inf[] = "Inf";
-static char __pyx_k__add[] = "add";
-static char __pyx_k__chr[] = "chr";
-static char __pyx_k__csv[] = "csv";
-static char __pyx_k__end[] = "end";
-static char __pyx_k__int[] = "int";
-static char __pyx_k__ord[] = "ord";
-static char __pyx_k__pos[] = "pos";
-static char __pyx_k__qto[] = "qto";
-static char __pyx_k__rto[] = "rto";
-static char __pyx_k__seq[] = "seq";
-static char __pyx_k__sys[] = "sys";
-static char __pyx_k__tid[] = "tid";
-static char __pyx_k__vec[] = "vec";
-static char __pyx_k__Read[] = "Read";
-static char __pyx_k__aend[] = "aend";
-static char __pyx_k__auto[] = "auto";
-static char __pyx_k__copy[] = "copy";
-static char __pyx_k__flag[] = "flag";
-static char __pyx_k__gzip[] = "gzip";
-static char __pyx_k__join[] = "join";
-static char __pyx_k__mapq[] = "mapq";
-static char __pyx_k__math[] = "math";
-static char __pyx_k__mode[] = "mode";
-static char __pyx_k__mpos[] = "mpos";
-static char __pyx_k__mrnm[] = "mrnm";
-static char __pyx_k__name[] = "name";
-static char __pyx_k__none[] = "none";
-static char __pyx_k__open[] = "open";
-static char __pyx_k__path[] = "path";
-static char __pyx_k__qual[] = "qual";
-static char __pyx_k__read[] = "read";
-static char __pyx_k__size[] = "size";
-static char __pyx_k__step[] = "step";
-static char __pyx_k__stop[] = "stop";
-static char __pyx_k__tags[] = "tags";
-static char __pyx_k__type[] = "type";
-static char __pyx_k__warn[] = "warn";
-static char __pyx_k__apply[] = "apply";
-static char __pyx_k__array[] = "array";
-static char __pyx_k__check[] = "check";
-static char __pyx_k__chrom[] = "chrom";
-static char __pyx_k__cigar[] = "cigar";
-static char __pyx_k__close[] = "close";
-static char __pyx_k__count[] = "count";
-static char __pyx_k__descr[] = "descr";
-static char __pyx_k__dtype[] = "dtype";
-static char __pyx_k__empty[] = "empty";
-static char __pyx_k__end_d[] = "end_d";
-static char __pyx_k__first[] = "first";
-static char __pyx_k__index[] = "index";
-static char __pyx_k__isize[] = "isize";
-static char __pyx_k__log10[] = "log10";
-static char __pyx_k__numpy[] = "numpy";
-static char __pyx_k__phred[] = "phred";
-static char __pyx_k__pysam[] = "pysam";
-static char __pyx_k__qfrom[] = "qfrom";
-static char __pyx_k__qname[] = "qname";
-static char __pyx_k__range[] = "range";
-static char __pyx_k__rfrom[] = "rfrom";
-static char __pyx_k__shape[] = "shape";
-static char __pyx_k__split[] = "split";
-static char __pyx_k__start[] = "start";
-static char __pyx_k__steps[] = "steps";
-static char __pyx_k__type_[] = "type_";
-static char __pyx_k__upper[] = "upper";
-static char __pyx_k__write[] = "write";
-static char __pyx_k__zeros[] = "zeros";
-static char __pyx_k__chroms[] = "chroms";
-static char __pyx_k__create[] = "create";
-static char __pyx_k__gettid[] = "gettid";
-static char __pyx_k__length[] = "length";
-static char __pyx_k__maxint[] = "maxint";
-static char __pyx_k__memmap[] = "memmap";
-static char __pyx_k__offset[] = "offset";
-static char __pyx_k__padded[] = "padded";
-static char __pyx_k__ref_iv[] = "ref_iv";
-static char __pyx_k__rstrip[] = "rstrip";
-static char __pyx_k__second[] = "second";
-static char __pyx_k__solexa[] = "solexa";
-static char __pyx_k__stderr[] = "stderr";
-static char __pyx_k__strand[] = "strand";
-static char __pyx_k__values[] = "values";
-static char __pyx_k__xrange[] = "xrange";
-static char __pyx_k__aligned[] = "aligned";
-static char __pyx_k__compile[] = "compile";
-static char __pyx_k__deleted[] = "deleted";
-static char __pyx_k__matched[] = "matched";
-static char __pyx_k__missing[] = "missing";
-static char __pyx_k__ndarray[] = "ndarray";
-static char __pyx_k__noquals[] = "noquals";
-static char __pyx_k__pattern[] = "pattern";
-static char __pyx_k__qualstr[] = "qualstr";
-static char __pyx_k__samfile[] = "samfile";
-static char __pyx_k__skipped[] = "skipped";
-static char __pyx_k__start_d[] = "start_d";
-static char __pyx_k__storage[] = "storage";
-static char __pyx_k__unknown[] = "unknown";
-static char __pyx_k__unnamed[] = "unnamed";
-static char __pyx_k__KeyError[] = "KeyError";
-static char __pyx_k__StringIO[] = "StringIO";
-static char __pyx_k____iadd__[] = "__iadd__";
-static char __pyx_k____init__[] = "__init__";
-static char __pyx_k____main__[] = "__main__";
-static char __pyx_k____name__[] = "__name__";
-static char __pyx_k____test__[] = "__test__";
-static char __pyx_k___qualarr[] = "_qualarr";
-static char __pyx_k___qualstr[] = "_qualstr";
-static char __pyx_k___storage[] = "_storage";
-static char __pyx_k__contains[] = "contains";
-static char __pyx_k__filename[] = "filename";
-static char __pyx_k__getrname[] = "getrname";
-static char __pyx_k__getvalue[] = "getvalue";
-static char __pyx_k__inserted[] = "inserted";
-static char __pyx_k__is_read1[] = "is_read1";
-static char __pyx_k__is_read2[] = "is_read2";
-static char __pyx_k__overlaps[] = "overlaps";
-static char __pyx_k__property[] = "property";
-static char __pyx_k__ref_left[] = "ref_left";
-static char __pyx_k__stranded[] = "stranded";
-static char __pyx_k__typecode[] = "typecode";
-static char __pyx_k__warnings[] = "warnings";
-static char __pyx_k__TypeError[] = "TypeError";
-static char __pyx_k____class__[] = "__class__";
-static char __pyx_k__add_chrom[] = "add_chrom";
-static char __pyx_k__cStringIO[] = "cStringIO";
-static char __pyx_k__enumerate[] = "enumerate";
-static char __pyx_k__is_paired[] = "is_paired";
-static char __pyx_k__is_qcfail[] = "is_qcfail";
-static char __pyx_k__itertools[] = "itertools";
-static char __pyx_k__qualscale[] = "qualscale";
-static char __pyx_k__translate[] = "translate";
-static char __pyx_k__IndexError[] = "IndexError";
-static char __pyx_k__StepVector[] = "StepVector";
-static char __pyx_k__ValueError[] = "ValueError";
-static char __pyx_k____reduce__[] = "__reduce__";
-static char __pyx_k___qualscale[] = "_qualscale";
-static char __pyx_k__is_reverse[] = "is_reverse";
-static char __pyx_k__memmap_dir[] = "memmap_dir";
-static char __pyx_k__paired_end[] = "paired_end";
-static char __pyx_k__AlignedRead[] = "AlignedRead";
-static char __pyx_k__ImportError[] = "ImportError";
-static char __pyx_k__bowtie_line[] = "bowtie_line";
-static char __pyx_k__cigar_pairs[] = "cigar_pairs";
-static char __pyx_k__collections[] = "collections";
-static char __pyx_k__is_unmapped[] = "is_unmapped";
-static char __pyx_k__max_mm_qual[] = "max_mm_qual";
-static char __pyx_k__revcomp_of_[] = "revcomp_of_";
-static char __pyx_k__start_index[] = "start_index";
-static char __pyx_k__RuntimeError[] = "RuntimeError";
-static char __pyx_k___create_view[] = "_create_view";
-static char __pyx_k__cigar_string[] = "cigar_string";
-static char __pyx_k__is_duplicate[] = "is_duplicate";
-static char __pyx_k__is_secondary[] = "is_secondary";
-static char __pyx_k__mate_aligned[] = "mate_aligned";
-static char __pyx_k__chrom_vectors[] = "chrom_vectors";
-static char __pyx_k__from_SAM_line[] = "from_SAM_line";
-static char __pyx_k__mismatch_prop[] = "mismatch_prop";
-static char __pyx_k__track_options[] = "track_options";
-static char __pyx_k__trim_left_end[] = "trim_left_end";
-static char __pyx_k__base_to_column[] = "base_to_column";
-static char __pyx_k__is_proper_pair[] = "is_proper_pair";
-static char __pyx_k__not_paired_end[] = "not_paired_end";
-static char __pyx_k__trim_right_end[] = "trim_right_end";
-static char __pyx_k___HTSeq_internal[] = "_HTSeq_internal";
-static char __pyx_k___re_cigar_codes[] = "_re_cigar_codes";
-static char __pyx_k__is_contained_in[] = "is_contained_in";
-static char __pyx_k__mate_is_reverse[] = "mate_is_reverse";
-static char __pyx_k__read_as_aligned[] = "read_as_aligned";
-static char __pyx_k__convert_to_phred[] = "convert_to_phred";
-static char __pyx_k__file_or_filename[] = "file_or_filename";
-static char __pyx_k__ChromVector_steps[] = "ChromVector_steps";
-static char __pyx_k__extend_to_include[] = "extend_to_include";
-static char __pyx_k__is_vector_of_sets[] = "is_vector_of_sets";
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-static int __pyx_setprop_5HTSeq_6_HTSeq_15GenomicInterval_strand(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_6strand___set__(o, v);
- }
- else {
- PyErr_SetString(PyExc_NotImplementedError, "__del__");
- return -1;
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_length(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_6length___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_15GenomicInterval_length(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_6length_1__set__(o, v);
- }
- else {
- PyErr_SetString(PyExc_NotImplementedError, "__del__");
- return -1;
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_start_d(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_7start_d___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_15GenomicInterval_start_d(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_7start_d_1__set__(o, v);
- }
- else {
- PyErr_SetString(PyExc_NotImplementedError, "__del__");
- return -1;
- }
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-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_end_d(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_5end_d___get__(o);
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_start_as_pos(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_12start_as_pos___get__(o);
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_end_as_pos(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_10end_as_pos___get__(o);
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_start_d_as_pos(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_14start_d_as_pos___get__(o);
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_end_d_as_pos(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_12end_d_as_pos___get__(o);
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_chrom(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_5chrom___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_15GenomicInterval_chrom(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_5chrom_1__set__(o, v);
- }
- else {
- return __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_5chrom_2__del__(o);
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_start(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_5start___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_15GenomicInterval_start(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_5start_1__set__(o, v);
- }
- else {
- PyErr_SetString(PyExc_NotImplementedError, "__del__");
- return -1;
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_end(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_3end___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_15GenomicInterval_end(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_3end_1__set__(o, v);
- }
- else {
- PyErr_SetString(PyExc_NotImplementedError, "__del__");
- return -1;
- }
-}
-
-static PyMethodDef __pyx_methods_5HTSeq_6_HTSeq_GenomicInterval[] = {
- {__Pyx_NAMESTR("__reduce__"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_1__reduce__, METH_NOARGS, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("__copy__"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_2__copy__, METH_NOARGS, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("is_contained_in"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_7is_contained_in, METH_O, __Pyx_DOCSTR(__pyx_doc_5HTSeq_6_HTSeq_15GenomicInterval_7is_contained_in)},
- {__Pyx_NAMESTR("contains"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_8contains, METH_O, __Pyx_DOCSTR(__pyx_doc_5HTSeq_6_HTSeq_15GenomicInterval_8contains)},
- {__Pyx_NAMESTR("overlaps"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_9overlaps, METH_O, __Pyx_DOCSTR(__pyx_doc_5HTSeq_6_HTSeq_15GenomicInterval_9overlaps)},
- {__Pyx_NAMESTR("xrange"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_10xrange, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(__pyx_doc_5HTSeq_6_HTSeq_15GenomicInterval_10xrange)},
- {__Pyx_NAMESTR("xrange_d"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_11xrange_d, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(__pyx_doc_5HTSeq_6_HTSeq_15GenomicInterval_11xrange_d)},
- {__Pyx_NAMESTR("extend_to_include"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_12extend_to_include, METH_O, __Pyx_DOCSTR(__pyx_doc_5HTSeq_6_HTSeq_15GenomicInterval_12extend_to_include)},
- {__Pyx_NAMESTR("copy"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_13copy, METH_NOARGS, __Pyx_DOCSTR(0)},
- {0, 0, 0, 0}
-};
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-static struct PyGetSetDef __pyx_getsets_5HTSeq_6_HTSeq_GenomicInterval[] = {
- {(char *)"strand", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_strand, __pyx_setprop_5HTSeq_6_HTSeq_15GenomicInterval_strand, 0, 0},
- {(char *)"length", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_length, __pyx_setprop_5HTSeq_6_HTSeq_15GenomicInterval_length, __Pyx_DOCSTR(__pyx_k_126), 0},
- {(char *)"start_d", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_start_d, __pyx_setprop_5HTSeq_6_HTSeq_15GenomicInterval_start_d, __Pyx_DOCSTR(__pyx_k_127), 0},
- {(char *)"end_d", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_end_d, 0, 0, 0},
- {(char *)"start_as_pos", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_start_as_pos, 0, 0, 0},
- {(char *)"end_as_pos", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_end_as_pos, 0, 0, 0},
- {(char *)"start_d_as_pos", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_start_d_as_pos, 0, 0, 0},
- {(char *)"end_d_as_pos", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_end_d_as_pos, 0, 0, 0},
- {(char *)"chrom", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_chrom, __pyx_setprop_5HTSeq_6_HTSeq_15GenomicInterval_chrom, 0, 0},
- {(char *)"start", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_start, __pyx_setprop_5HTSeq_6_HTSeq_15GenomicInterval_start, 0, 0},
- {(char *)"end", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicInterval_end, __pyx_setprop_5HTSeq_6_HTSeq_15GenomicInterval_end, 0, 0},
- {0, 0, 0, 0, 0}
-};
-
-static PyNumberMethods __pyx_tp_as_number_GenomicInterval = {
- 0, /*nb_add*/
- 0, /*nb_subtract*/
- 0, /*nb_multiply*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_divide*/
- #endif
- 0, /*nb_remainder*/
- 0, /*nb_divmod*/
- 0, /*nb_power*/
- 0, /*nb_negative*/
- 0, /*nb_positive*/
- 0, /*nb_absolute*/
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- #if PY_MAJOR_VERSION < 3
- 0, /*nb_oct*/
- #endif
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- 0, /*nb_hex*/
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- #if PY_MAJOR_VERSION < 3
- 0, /*nb_inplace_divide*/
- #endif
- 0, /*nb_inplace_remainder*/
- 0, /*nb_inplace_power*/
- 0, /*nb_inplace_lshift*/
- 0, /*nb_inplace_rshift*/
- 0, /*nb_inplace_and*/
- 0, /*nb_inplace_xor*/
- 0, /*nb_inplace_or*/
- 0, /*nb_floor_divide*/
- 0, /*nb_true_divide*/
- 0, /*nb_inplace_floor_divide*/
- 0, /*nb_inplace_true_divide*/
- #if PY_VERSION_HEX >= 0x02050000
- 0, /*nb_index*/
- #endif
-};
-
-static PySequenceMethods __pyx_tp_as_sequence_GenomicInterval = {
- 0, /*sq_length*/
- 0, /*sq_concat*/
- 0, /*sq_repeat*/
- 0, /*sq_item*/
- 0, /*sq_slice*/
- 0, /*sq_ass_item*/
- 0, /*sq_ass_slice*/
- 0, /*sq_contains*/
- 0, /*sq_inplace_concat*/
- 0, /*sq_inplace_repeat*/
-};
-
-static PyMappingMethods __pyx_tp_as_mapping_GenomicInterval = {
- 0, /*mp_length*/
- 0, /*mp_subscript*/
- 0, /*mp_ass_subscript*/
-};
-
-static PyBufferProcs __pyx_tp_as_buffer_GenomicInterval = {
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getreadbuffer*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getwritebuffer*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getsegcount*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getcharbuffer*/
- #endif
- #if PY_VERSION_HEX >= 0x02060000
- 0, /*bf_getbuffer*/
- #endif
- #if PY_VERSION_HEX >= 0x02060000
- 0, /*bf_releasebuffer*/
- #endif
-};
-
-static PyTypeObject __pyx_type_5HTSeq_6_HTSeq_GenomicInterval = {
- PyVarObject_HEAD_INIT(0, 0)
- __Pyx_NAMESTR("HTSeq._HTSeq.GenomicInterval"), /*tp_name*/
- sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval), /*tp_basicsize*/
- 0, /*tp_itemsize*/
- __pyx_tp_dealloc_5HTSeq_6_HTSeq_GenomicInterval, /*tp_dealloc*/
- 0, /*tp_print*/
- 0, /*tp_getattr*/
- 0, /*tp_setattr*/
- #if PY_MAJOR_VERSION < 3
- 0, /*tp_compare*/
- #else
- 0, /*reserved*/
- #endif
- __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_3__repr__, /*tp_repr*/
- &__pyx_tp_as_number_GenomicInterval, /*tp_as_number*/
- &__pyx_tp_as_sequence_GenomicInterval, /*tp_as_sequence*/
- &__pyx_tp_as_mapping_GenomicInterval, /*tp_as_mapping*/
- __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_6__hash__, /*tp_hash*/
- 0, /*tp_call*/
- __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_4__str__, /*tp_str*/
- 0, /*tp_getattro*/
- 0, /*tp_setattro*/
- &__pyx_tp_as_buffer_GenomicInterval, /*tp_as_buffer*/
- Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
- __Pyx_DOCSTR("A GenomicInterval specifies an interval (i.e., a range of \n consecutive positions) on a reference genome.\n \n A GenomicInterval object has the following slots, some of which \n are calculated from the other:\n \n chrom: The name of a sequence (i.e., chromosome, contig, or \n the like). \n start: The start of the interval. Even on the reverse strand,\n this is always the smaller of the two values 'start' and 'end'.\n Note that all positions should be given as 0-based value!\n end: The end of the interval. Following Python convention for \n ranges, this in one more than the coordinate of the last base\n that is considered part of the sequence.\n strand: The strand, as a single character, '+' or '-'. '.' indicates\n that the strand is irrelavant. (Alternatively, pass a Strand object.)\n length: The length of the interval, i.e., end - start\n start_d: The \"directional start\" position. This is the position of the\n first base of the interval, taking the strand into account. Hence, \n this is the same as 'start' except when strand == '-', in which \n case it is end-1.\n end_d: The \"directional end\": Usually, the same as 'end', but for \n strand=='-1', it is start-1.\n "), /*tp_doc*/
- __pyx_tp_traverse_5HTSeq_6_HTSeq_GenomicInterval, /*tp_traverse*/
- __pyx_tp_clear_5HTSeq_6_HTSeq_GenomicInterval, /*tp_clear*/
- __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval_5__richcmp__, /*tp_richcompare*/
- 0, /*tp_weaklistoffset*/
- 0, /*tp_iter*/
- 0, /*tp_iternext*/
- __pyx_methods_5HTSeq_6_HTSeq_GenomicInterval, /*tp_methods*/
- 0, /*tp_members*/
- __pyx_getsets_5HTSeq_6_HTSeq_GenomicInterval, /*tp_getset*/
- 0, /*tp_base*/
- 0, /*tp_dict*/
- 0, /*tp_descr_get*/
- 0, /*tp_descr_set*/
- 0, /*tp_dictoffset*/
- __pyx_pf_5HTSeq_6_HTSeq_15GenomicInterval___init__, /*tp_init*/
- 0, /*tp_alloc*/
- __pyx_tp_new_5HTSeq_6_HTSeq_GenomicInterval, /*tp_new*/
- 0, /*tp_free*/
- 0, /*tp_is_gc*/
- 0, /*tp_bases*/
- 0, /*tp_mro*/
- 0, /*tp_cache*/
- 0, /*tp_subclasses*/
- 0, /*tp_weaklist*/
- 0, /*tp_del*/
- #if PY_VERSION_HEX >= 0x02060000
- 0, /*tp_version_tag*/
- #endif
-};
-static struct __pyx_vtabstruct_5HTSeq_6_HTSeq_GenomicPosition __pyx_vtable_5HTSeq_6_HTSeq_GenomicPosition;
-
-static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_GenomicPosition(PyTypeObject *t, PyObject *a, PyObject *k) {
- struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition *p;
- PyObject *o = __pyx_tp_new_5HTSeq_6_HTSeq_GenomicInterval(t, a, k);
- if (!o) return 0;
- p = ((struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition *)o);
- p->__pyx_base.__pyx_vtab = (struct __pyx_vtabstruct_5HTSeq_6_HTSeq_GenomicInterval*)__pyx_vtabptr_5HTSeq_6_HTSeq_GenomicPosition;
- return o;
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicPosition_pos(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_15GenomicPosition_3pos___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_15GenomicPosition_pos(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_15GenomicPosition_3pos_1__set__(o, v);
- }
- else {
- PyErr_SetString(PyExc_NotImplementedError, "__del__");
- return -1;
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicPosition_end(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_15GenomicPosition_3end___get__(o);
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15GenomicPosition_length(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_15GenomicPosition_6length___get__(o);
-}
-
-static PyMethodDef __pyx_methods_5HTSeq_6_HTSeq_GenomicPosition[] = {
- {__Pyx_NAMESTR("__reduce__"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_15GenomicPosition_3__reduce__, METH_NOARGS, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("copy"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_15GenomicPosition_4copy, METH_NOARGS, __Pyx_DOCSTR(0)},
- {0, 0, 0, 0}
-};
-
-static struct PyGetSetDef __pyx_getsets_5HTSeq_6_HTSeq_GenomicPosition[] = {
- {(char *)"pos", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicPosition_pos, __pyx_setprop_5HTSeq_6_HTSeq_15GenomicPosition_pos, __Pyx_DOCSTR(__pyx_k_128), 0},
- {(char *)"end", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicPosition_end, 0, 0, 0},
- {(char *)"length", __pyx_getprop_5HTSeq_6_HTSeq_15GenomicPosition_length, 0, 0, 0},
- {0, 0, 0, 0, 0}
-};
-
-static PyNumberMethods __pyx_tp_as_number_GenomicPosition = {
- 0, /*nb_add*/
- 0, /*nb_subtract*/
- 0, /*nb_multiply*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_divide*/
- #endif
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- 0, /*nb_power*/
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- 0, /*nb_absolute*/
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- 0, /*nb_and*/
- 0, /*nb_xor*/
- 0, /*nb_or*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_coerce*/
- #endif
- 0, /*nb_int*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_long*/
- #else
- 0, /*reserved*/
- #endif
- 0, /*nb_float*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_oct*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_hex*/
- #endif
- 0, /*nb_inplace_add*/
- 0, /*nb_inplace_subtract*/
- 0, /*nb_inplace_multiply*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_inplace_divide*/
- #endif
- 0, /*nb_inplace_remainder*/
- 0, /*nb_inplace_power*/
- 0, /*nb_inplace_lshift*/
- 0, /*nb_inplace_rshift*/
- 0, /*nb_inplace_and*/
- 0, /*nb_inplace_xor*/
- 0, /*nb_inplace_or*/
- 0, /*nb_floor_divide*/
- 0, /*nb_true_divide*/
- 0, /*nb_inplace_floor_divide*/
- 0, /*nb_inplace_true_divide*/
- #if PY_VERSION_HEX >= 0x02050000
- 0, /*nb_index*/
- #endif
-};
-
-static PySequenceMethods __pyx_tp_as_sequence_GenomicPosition = {
- 0, /*sq_length*/
- 0, /*sq_concat*/
- 0, /*sq_repeat*/
- 0, /*sq_item*/
- 0, /*sq_slice*/
- 0, /*sq_ass_item*/
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- 0, /*sq_contains*/
- 0, /*sq_inplace_concat*/
- 0, /*sq_inplace_repeat*/
-};
-
-static PyMappingMethods __pyx_tp_as_mapping_GenomicPosition = {
- 0, /*mp_length*/
- 0, /*mp_subscript*/
- 0, /*mp_ass_subscript*/
-};
-
-static PyBufferProcs __pyx_tp_as_buffer_GenomicPosition = {
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- 0, /*bf_getreadbuffer*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getwritebuffer*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getsegcount*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getcharbuffer*/
- #endif
- #if PY_VERSION_HEX >= 0x02060000
- 0, /*bf_getbuffer*/
- #endif
- #if PY_VERSION_HEX >= 0x02060000
- 0, /*bf_releasebuffer*/
- #endif
-};
-
-static PyTypeObject __pyx_type_5HTSeq_6_HTSeq_GenomicPosition = {
- PyVarObject_HEAD_INIT(0, 0)
- __Pyx_NAMESTR("HTSeq._HTSeq.GenomicPosition"), /*tp_name*/
- sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition), /*tp_basicsize*/
- 0, /*tp_itemsize*/
- __pyx_tp_dealloc_5HTSeq_6_HTSeq_GenomicInterval, /*tp_dealloc*/
- 0, /*tp_print*/
- 0, /*tp_getattr*/
- 0, /*tp_setattr*/
- #if PY_MAJOR_VERSION < 3
- 0, /*tp_compare*/
- #else
- 0, /*reserved*/
- #endif
- __pyx_pf_5HTSeq_6_HTSeq_15GenomicPosition_1__repr__, /*tp_repr*/
- &__pyx_tp_as_number_GenomicPosition, /*tp_as_number*/
- &__pyx_tp_as_sequence_GenomicPosition, /*tp_as_sequence*/
- &__pyx_tp_as_mapping_GenomicPosition, /*tp_as_mapping*/
- 0, /*tp_hash*/
- 0, /*tp_call*/
- __pyx_pf_5HTSeq_6_HTSeq_15GenomicPosition_2__str__, /*tp_str*/
- 0, /*tp_getattro*/
- 0, /*tp_setattro*/
- &__pyx_tp_as_buffer_GenomicPosition, /*tp_as_buffer*/
- Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
- __Pyx_DOCSTR("A GenomicPosition specifies the position of a nucleotide or\n base pair on a reference genome.\n \n It has the following slots:\n chrom: The name of a sequence (i.e., chromosome, contig, or \n the like). \n pos: The position on the sequence specified by seqname.\n The position should always be given as 0-based value!\n strand: The strand, as a single character, '+' or '-'. '.' indicates\n that the strand is irrelavant.\n\n The GenomicPosition class is derived from GenomicInterval. Hence,\n a GenomicPosition is always a GenomicInterval of length 1. Do not tinker\n with the exposed GenomeInterval slots.\n "), /*tp_doc*/
- __pyx_tp_traverse_5HTSeq_6_HTSeq_GenomicInterval, /*tp_traverse*/
- __pyx_tp_clear_5HTSeq_6_HTSeq_GenomicInterval, /*tp_clear*/
- 0, /*tp_richcompare*/
- 0, /*tp_weaklistoffset*/
- 0, /*tp_iter*/
- 0, /*tp_iternext*/
- __pyx_methods_5HTSeq_6_HTSeq_GenomicPosition, /*tp_methods*/
- 0, /*tp_members*/
- __pyx_getsets_5HTSeq_6_HTSeq_GenomicPosition, /*tp_getset*/
- 0, /*tp_base*/
- 0, /*tp_dict*/
- 0, /*tp_descr_get*/
- 0, /*tp_descr_set*/
- 0, /*tp_dictoffset*/
- __pyx_pf_5HTSeq_6_HTSeq_15GenomicPosition___init__, /*tp_init*/
- 0, /*tp_alloc*/
- __pyx_tp_new_5HTSeq_6_HTSeq_GenomicPosition, /*tp_new*/
- 0, /*tp_free*/
- 0, /*tp_is_gc*/
- 0, /*tp_bases*/
- 0, /*tp_mro*/
- 0, /*tp_cache*/
- 0, /*tp_subclasses*/
- 0, /*tp_weaklist*/
- 0, /*tp_del*/
- #if PY_VERSION_HEX >= 0x02060000
- 0, /*tp_version_tag*/
- #endif
-};
-static struct __pyx_vtabstruct_5HTSeq_6_HTSeq_Sequence __pyx_vtable_5HTSeq_6_HTSeq_Sequence;
-
-static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_Sequence(PyTypeObject *t, PyObject *a, PyObject *k) {
- struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *p;
- PyObject *o = (*t->tp_alloc)(t, 0);
- if (!o) return 0;
- p = ((struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *)o);
- p->__pyx_vtab = __pyx_vtabptr_5HTSeq_6_HTSeq_Sequence;
- p->seq = ((PyObject*)Py_None); Py_INCREF(Py_None);
- p->name = ((PyObject*)Py_None); Py_INCREF(Py_None);
- p->descr = ((PyObject*)Py_None); Py_INCREF(Py_None);
- return o;
-}
-
-static void __pyx_tp_dealloc_5HTSeq_6_HTSeq_Sequence(PyObject *o) {
- struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *p = (struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *)o;
- Py_XDECREF(((PyObject *)p->seq));
- Py_XDECREF(((PyObject *)p->name));
- Py_XDECREF(((PyObject *)p->descr));
- (*Py_TYPE(o)->tp_free)(o);
-}
-
-static int __pyx_tp_traverse_5HTSeq_6_HTSeq_Sequence(PyObject *o, visitproc v, void *a) {
- int e;
- struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *p = (struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *)o;
- if (p->seq) {
- e = (*v)(p->seq, a); if (e) return e;
- }
- if (p->name) {
- e = (*v)(p->name, a); if (e) return e;
- }
- if (p->descr) {
- e = (*v)(p->descr, a); if (e) return e;
- }
- return 0;
-}
-
-static int __pyx_tp_clear_5HTSeq_6_HTSeq_Sequence(PyObject *o) {
- struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *p = (struct __pyx_obj_5HTSeq_6_HTSeq_Sequence *)o;
- PyObject* tmp;
- tmp = ((PyObject*)p->seq);
- p->seq = ((PyObject*)Py_None); Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- tmp = ((PyObject*)p->name);
- p->name = ((PyObject*)Py_None); Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- tmp = ((PyObject*)p->descr);
- p->descr = ((PyObject*)Py_None); Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- return 0;
-}
-static PyObject *__pyx_sq_item_5HTSeq_6_HTSeq_Sequence(PyObject *o, Py_ssize_t i) {
- PyObject *r;
- PyObject *x = PyInt_FromSsize_t(i); if(!x) return 0;
- r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x);
- Py_DECREF(x);
- return r;
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_8Sequence_seq(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_8Sequence_3seq___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_8Sequence_seq(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_8Sequence_3seq_1__set__(o, v);
- }
- else {
- return __pyx_pf_5HTSeq_6_HTSeq_8Sequence_3seq_2__del__(o);
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_8Sequence_name(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_8Sequence_4name___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_8Sequence_name(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_8Sequence_4name_1__set__(o, v);
- }
- else {
- return __pyx_pf_5HTSeq_6_HTSeq_8Sequence_4name_2__del__(o);
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_8Sequence_descr(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_8Sequence_5descr___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_8Sequence_descr(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_8Sequence_5descr_1__set__(o, v);
- }
- else {
- return __pyx_pf_5HTSeq_6_HTSeq_8Sequence_5descr_2__del__(o);
- }
-}
-
-static PyMethodDef __pyx_methods_5HTSeq_6_HTSeq_Sequence[] = {
- {__Pyx_NAMESTR("get_reverse_complement"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_8Sequence_1get_reverse_complement, METH_NOARGS, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("write_to_fasta_file"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_8Sequence_6write_to_fasta_file, METH_O, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("add_bases_to_count_array"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_8Sequence_7add_bases_to_count_array, METH_O, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("trim_left_end"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_8Sequence_8trim_left_end, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("trim_right_end"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_8Sequence_9trim_right_end, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(0)},
- {0, 0, 0, 0}
-};
-
-static struct PyGetSetDef __pyx_getsets_5HTSeq_6_HTSeq_Sequence[] = {
- {(char *)"seq", __pyx_getprop_5HTSeq_6_HTSeq_8Sequence_seq, __pyx_setprop_5HTSeq_6_HTSeq_8Sequence_seq, 0, 0},
- {(char *)"name", __pyx_getprop_5HTSeq_6_HTSeq_8Sequence_name, __pyx_setprop_5HTSeq_6_HTSeq_8Sequence_name, 0, 0},
- {(char *)"descr", __pyx_getprop_5HTSeq_6_HTSeq_8Sequence_descr, __pyx_setprop_5HTSeq_6_HTSeq_8Sequence_descr, 0, 0},
- {0, 0, 0, 0, 0}
-};
-
-static PyNumberMethods __pyx_tp_as_number_Sequence = {
- 0, /*nb_add*/
- 0, /*nb_subtract*/
- 0, /*nb_multiply*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_divide*/
- #endif
- 0, /*nb_remainder*/
- 0, /*nb_divmod*/
- 0, /*nb_power*/
- 0, /*nb_negative*/
- 0, /*nb_positive*/
- 0, /*nb_absolute*/
- 0, /*nb_nonzero*/
- 0, /*nb_invert*/
- 0, /*nb_lshift*/
- 0, /*nb_rshift*/
- 0, /*nb_and*/
- 0, /*nb_xor*/
- 0, /*nb_or*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_coerce*/
- #endif
- 0, /*nb_int*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_long*/
- #else
- 0, /*reserved*/
- #endif
- 0, /*nb_float*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_oct*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_hex*/
- #endif
- 0, /*nb_inplace_add*/
- 0, /*nb_inplace_subtract*/
- 0, /*nb_inplace_multiply*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_inplace_divide*/
- #endif
- 0, /*nb_inplace_remainder*/
- 0, /*nb_inplace_power*/
- 0, /*nb_inplace_lshift*/
- 0, /*nb_inplace_rshift*/
- 0, /*nb_inplace_and*/
- 0, /*nb_inplace_xor*/
- 0, /*nb_inplace_or*/
- 0, /*nb_floor_divide*/
- 0, /*nb_true_divide*/
- 0, /*nb_inplace_floor_divide*/
- 0, /*nb_inplace_true_divide*/
- #if PY_VERSION_HEX >= 0x02050000
- 0, /*nb_index*/
- #endif
-};
-
-static PySequenceMethods __pyx_tp_as_sequence_Sequence = {
- __pyx_pf_5HTSeq_6_HTSeq_8Sequence_4__len__, /*sq_length*/
- 0, /*sq_concat*/
- 0, /*sq_repeat*/
- __pyx_sq_item_5HTSeq_6_HTSeq_Sequence, /*sq_item*/
- 0, /*sq_slice*/
- 0, /*sq_ass_item*/
- 0, /*sq_ass_slice*/
- 0, /*sq_contains*/
- 0, /*sq_inplace_concat*/
- 0, /*sq_inplace_repeat*/
-};
-
-static PyMappingMethods __pyx_tp_as_mapping_Sequence = {
- __pyx_pf_5HTSeq_6_HTSeq_8Sequence_4__len__, /*mp_length*/
- __pyx_pf_5HTSeq_6_HTSeq_8Sequence_5__getitem__, /*mp_subscript*/
- 0, /*mp_ass_subscript*/
-};
-
-static PyBufferProcs __pyx_tp_as_buffer_Sequence = {
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getreadbuffer*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getwritebuffer*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getsegcount*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getcharbuffer*/
- #endif
- #if PY_VERSION_HEX >= 0x02060000
- 0, /*bf_getbuffer*/
- #endif
- #if PY_VERSION_HEX >= 0x02060000
- 0, /*bf_releasebuffer*/
- #endif
-};
-
-static PyTypeObject __pyx_type_5HTSeq_6_HTSeq_Sequence = {
- PyVarObject_HEAD_INIT(0, 0)
- __Pyx_NAMESTR("HTSeq._HTSeq.Sequence"), /*tp_name*/
- sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_Sequence), /*tp_basicsize*/
- 0, /*tp_itemsize*/
- __pyx_tp_dealloc_5HTSeq_6_HTSeq_Sequence, /*tp_dealloc*/
- 0, /*tp_print*/
- 0, /*tp_getattr*/
- 0, /*tp_setattr*/
- #if PY_MAJOR_VERSION < 3
- 0, /*tp_compare*/
- #else
- 0, /*reserved*/
- #endif
- __pyx_pf_5HTSeq_6_HTSeq_8Sequence_3__repr__, /*tp_repr*/
- &__pyx_tp_as_number_Sequence, /*tp_as_number*/
- &__pyx_tp_as_sequence_Sequence, /*tp_as_sequence*/
- &__pyx_tp_as_mapping_Sequence, /*tp_as_mapping*/
- 0, /*tp_hash*/
- 0, /*tp_call*/
- __pyx_pf_5HTSeq_6_HTSeq_8Sequence_2__str__, /*tp_str*/
- 0, /*tp_getattro*/
- 0, /*tp_setattro*/
- &__pyx_tp_as_buffer_Sequence, /*tp_as_buffer*/
- Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
- __Pyx_DOCSTR("A Sequence, typically of DNA, with a name.\n "), /*tp_doc*/
- __pyx_tp_traverse_5HTSeq_6_HTSeq_Sequence, /*tp_traverse*/
- __pyx_tp_clear_5HTSeq_6_HTSeq_Sequence, /*tp_clear*/
- 0, /*tp_richcompare*/
- 0, /*tp_weaklistoffset*/
- 0, /*tp_iter*/
- 0, /*tp_iternext*/
- __pyx_methods_5HTSeq_6_HTSeq_Sequence, /*tp_methods*/
- 0, /*tp_members*/
- __pyx_getsets_5HTSeq_6_HTSeq_Sequence, /*tp_getset*/
- 0, /*tp_base*/
- 0, /*tp_dict*/
- 0, /*tp_descr_get*/
- 0, /*tp_descr_set*/
- 0, /*tp_dictoffset*/
- __pyx_pf_5HTSeq_6_HTSeq_8Sequence___init__, /*tp_init*/
- 0, /*tp_alloc*/
- __pyx_tp_new_5HTSeq_6_HTSeq_Sequence, /*tp_new*/
- 0, /*tp_free*/
- 0, /*tp_is_gc*/
- 0, /*tp_bases*/
- 0, /*tp_mro*/
- 0, /*tp_cache*/
- 0, /*tp_subclasses*/
- 0, /*tp_weaklist*/
- 0, /*tp_del*/
- #if PY_VERSION_HEX >= 0x02060000
- 0, /*tp_version_tag*/
- #endif
-};
-static struct __pyx_vtabstruct_5HTSeq_6_HTSeq_SequenceWithQualities __pyx_vtable_5HTSeq_6_HTSeq_SequenceWithQualities;
-
-static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_SequenceWithQualities(PyTypeObject *t, PyObject *a, PyObject *k) {
- struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *p;
- PyObject *o = __pyx_tp_new_5HTSeq_6_HTSeq_Sequence(t, a, k);
- if (!o) return 0;
- p = ((struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *)o);
- p->__pyx_base.__pyx_vtab = (struct __pyx_vtabstruct_5HTSeq_6_HTSeq_Sequence*)__pyx_vtabptr_5HTSeq_6_HTSeq_SequenceWithQualities;
- p->_qualstr = ((PyObject*)Py_None); Py_INCREF(Py_None);
- p->_qualstr_phred = ((PyObject*)Py_None); Py_INCREF(Py_None);
- p->_qualscale = ((PyObject*)Py_None); Py_INCREF(Py_None);
- p->_qualarr = Py_None; Py_INCREF(Py_None);
- return o;
-}
-
-static void __pyx_tp_dealloc_5HTSeq_6_HTSeq_SequenceWithQualities(PyObject *o) {
- struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *p = (struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *)o;
- Py_XDECREF(((PyObject *)p->_qualstr));
- Py_XDECREF(((PyObject *)p->_qualstr_phred));
- Py_XDECREF(((PyObject *)p->_qualscale));
- Py_XDECREF(p->_qualarr);
- __pyx_tp_dealloc_5HTSeq_6_HTSeq_Sequence(o);
-}
-
-static int __pyx_tp_traverse_5HTSeq_6_HTSeq_SequenceWithQualities(PyObject *o, visitproc v, void *a) {
- int e;
- struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *p = (struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *)o;
- e = __pyx_tp_traverse_5HTSeq_6_HTSeq_Sequence(o, v, a); if (e) return e;
- if (p->_qualstr) {
- e = (*v)(p->_qualstr, a); if (e) return e;
- }
- if (p->_qualstr_phred) {
- e = (*v)(p->_qualstr_phred, a); if (e) return e;
- }
- if (p->_qualscale) {
- e = (*v)(p->_qualscale, a); if (e) return e;
- }
- if (p->_qualarr) {
- e = (*v)(p->_qualarr, a); if (e) return e;
- }
- return 0;
-}
-
-static int __pyx_tp_clear_5HTSeq_6_HTSeq_SequenceWithQualities(PyObject *o) {
- struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *p = (struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *)o;
- PyObject* tmp;
- __pyx_tp_clear_5HTSeq_6_HTSeq_Sequence(o);
- tmp = ((PyObject*)p->_qualstr);
- p->_qualstr = ((PyObject*)Py_None); Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- tmp = ((PyObject*)p->_qualstr_phred);
- p->_qualstr_phred = ((PyObject*)Py_None); Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- tmp = ((PyObject*)p->_qualscale);
- p->_qualscale = ((PyObject*)Py_None); Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- tmp = ((PyObject*)p->_qualarr);
- p->_qualarr = Py_None; Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- return 0;
-}
-static PyObject *__pyx_sq_item_5HTSeq_6_HTSeq_SequenceWithQualities(PyObject *o, Py_ssize_t i) {
- PyObject *r;
- PyObject *x = PyInt_FromSsize_t(i); if(!x) return 0;
- r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x);
- Py_DECREF(x);
- return r;
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_21SequenceWithQualities_qual(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_4qual___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_21SequenceWithQualities_qual(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_4qual_1__set__(o, v);
- }
- else {
- PyErr_SetString(PyExc_NotImplementedError, "__del__");
- return -1;
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_21SequenceWithQualities__qualstr(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_8_qualstr___get__(o);
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_21SequenceWithQualities__qualstr_phred(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_14_qualstr_phred___get__(o);
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_21SequenceWithQualities__qualscale(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_10_qualscale___get__(o);
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_21SequenceWithQualities__qualarr(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_8_qualarr___get__(o);
-}
-
-static PyMethodDef __pyx_methods_5HTSeq_6_HTSeq_SequenceWithQualities[] = {
- {__Pyx_NAMESTR("qualstr"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_3qualstr, METH_NOARGS, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("write_to_fastq_file"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_4write_to_fastq_file, METH_O, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("get_fastq_str"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_5get_fastq_str, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("get_reverse_complement"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_6get_reverse_complement, METH_NOARGS, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("add_qual_to_count_array"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_7add_qual_to_count_array, METH_O, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("trim_left_end_with_quals"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_8trim_left_end_with_quals, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("trim_right_end_with_quals"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_9trim_right_end_with_quals, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(0)},
- {0, 0, 0, 0}
-};
-
-static struct PyGetSetDef __pyx_getsets_5HTSeq_6_HTSeq_SequenceWithQualities[] = {
- {(char *)"qual", __pyx_getprop_5HTSeq_6_HTSeq_21SequenceWithQualities_qual, __pyx_setprop_5HTSeq_6_HTSeq_21SequenceWithQualities_qual, 0, 0},
- {(char *)"_qualstr", __pyx_getprop_5HTSeq_6_HTSeq_21SequenceWithQualities__qualstr, 0, 0, 0},
- {(char *)"_qualstr_phred", __pyx_getprop_5HTSeq_6_HTSeq_21SequenceWithQualities__qualstr_phred, 0, 0, 0},
- {(char *)"_qualscale", __pyx_getprop_5HTSeq_6_HTSeq_21SequenceWithQualities__qualscale, 0, 0, 0},
- {(char *)"_qualarr", __pyx_getprop_5HTSeq_6_HTSeq_21SequenceWithQualities__qualarr, 0, 0, 0},
- {0, 0, 0, 0, 0}
-};
-
-static PyNumberMethods __pyx_tp_as_number_SequenceWithQualities = {
- 0, /*nb_add*/
- 0, /*nb_subtract*/
- 0, /*nb_multiply*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_divide*/
- #endif
- 0, /*nb_remainder*/
- 0, /*nb_divmod*/
- 0, /*nb_power*/
- 0, /*nb_negative*/
- 0, /*nb_positive*/
- 0, /*nb_absolute*/
- 0, /*nb_nonzero*/
- 0, /*nb_invert*/
- 0, /*nb_lshift*/
- 0, /*nb_rshift*/
- 0, /*nb_and*/
- 0, /*nb_xor*/
- 0, /*nb_or*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_coerce*/
- #endif
- 0, /*nb_int*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_long*/
- #else
- 0, /*reserved*/
- #endif
- 0, /*nb_float*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_oct*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_hex*/
- #endif
- 0, /*nb_inplace_add*/
- 0, /*nb_inplace_subtract*/
- 0, /*nb_inplace_multiply*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_inplace_divide*/
- #endif
- 0, /*nb_inplace_remainder*/
- 0, /*nb_inplace_power*/
- 0, /*nb_inplace_lshift*/
- 0, /*nb_inplace_rshift*/
- 0, /*nb_inplace_and*/
- 0, /*nb_inplace_xor*/
- 0, /*nb_inplace_or*/
- 0, /*nb_floor_divide*/
- 0, /*nb_true_divide*/
- 0, /*nb_inplace_floor_divide*/
- 0, /*nb_inplace_true_divide*/
- #if PY_VERSION_HEX >= 0x02050000
- 0, /*nb_index*/
- #endif
-};
-
-static PySequenceMethods __pyx_tp_as_sequence_SequenceWithQualities = {
- 0, /*sq_length*/
- 0, /*sq_concat*/
- 0, /*sq_repeat*/
- __pyx_sq_item_5HTSeq_6_HTSeq_SequenceWithQualities, /*sq_item*/
- 0, /*sq_slice*/
- 0, /*sq_ass_item*/
- 0, /*sq_ass_slice*/
- 0, /*sq_contains*/
- 0, /*sq_inplace_concat*/
- 0, /*sq_inplace_repeat*/
-};
-
-static PyMappingMethods __pyx_tp_as_mapping_SequenceWithQualities = {
- 0, /*mp_length*/
- __pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_2__getitem__, /*mp_subscript*/
- 0, /*mp_ass_subscript*/
-};
-
-static PyBufferProcs __pyx_tp_as_buffer_SequenceWithQualities = {
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getreadbuffer*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getwritebuffer*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getsegcount*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getcharbuffer*/
- #endif
- #if PY_VERSION_HEX >= 0x02060000
- 0, /*bf_getbuffer*/
- #endif
- #if PY_VERSION_HEX >= 0x02060000
- 0, /*bf_releasebuffer*/
- #endif
-};
-
-static PyTypeObject __pyx_type_5HTSeq_6_HTSeq_SequenceWithQualities = {
- PyVarObject_HEAD_INIT(0, 0)
- __Pyx_NAMESTR("HTSeq._HTSeq.SequenceWithQualities"), /*tp_name*/
- sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities), /*tp_basicsize*/
- 0, /*tp_itemsize*/
- __pyx_tp_dealloc_5HTSeq_6_HTSeq_SequenceWithQualities, /*tp_dealloc*/
- 0, /*tp_print*/
- 0, /*tp_getattr*/
- 0, /*tp_setattr*/
- #if PY_MAJOR_VERSION < 3
- 0, /*tp_compare*/
- #else
- 0, /*reserved*/
- #endif
- __pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities_1__repr__, /*tp_repr*/
- &__pyx_tp_as_number_SequenceWithQualities, /*tp_as_number*/
- &__pyx_tp_as_sequence_SequenceWithQualities, /*tp_as_sequence*/
- &__pyx_tp_as_mapping_SequenceWithQualities, /*tp_as_mapping*/
- 0, /*tp_hash*/
- 0, /*tp_call*/
- 0, /*tp_str*/
- 0, /*tp_getattro*/
- 0, /*tp_setattro*/
- &__pyx_tp_as_buffer_SequenceWithQualities, /*tp_as_buffer*/
- Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
- __Pyx_DOCSTR("A Sequence with base-call quality scores.\n It now has property 'qual', an integer NumPy array of Sanger/Phred \n quality scores of the base calls.\n "), /*tp_doc*/
- __pyx_tp_traverse_5HTSeq_6_HTSeq_SequenceWithQualities, /*tp_traverse*/
- __pyx_tp_clear_5HTSeq_6_HTSeq_SequenceWithQualities, /*tp_clear*/
- 0, /*tp_richcompare*/
- 0, /*tp_weaklistoffset*/
- 0, /*tp_iter*/
- 0, /*tp_iternext*/
- __pyx_methods_5HTSeq_6_HTSeq_SequenceWithQualities, /*tp_methods*/
- 0, /*tp_members*/
- __pyx_getsets_5HTSeq_6_HTSeq_SequenceWithQualities, /*tp_getset*/
- 0, /*tp_base*/
- 0, /*tp_dict*/
- 0, /*tp_descr_get*/
- 0, /*tp_descr_set*/
- 0, /*tp_dictoffset*/
- __pyx_pf_5HTSeq_6_HTSeq_21SequenceWithQualities___init__, /*tp_init*/
- 0, /*tp_alloc*/
- __pyx_tp_new_5HTSeq_6_HTSeq_SequenceWithQualities, /*tp_new*/
- 0, /*tp_free*/
- 0, /*tp_is_gc*/
- 0, /*tp_bases*/
- 0, /*tp_mro*/
- 0, /*tp_cache*/
- 0, /*tp_subclasses*/
- 0, /*tp_weaklist*/
- 0, /*tp_del*/
- #if PY_VERSION_HEX >= 0x02060000
- 0, /*tp_version_tag*/
- #endif
-};
-
-static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_Alignment(PyTypeObject *t, PyObject *a, PyObject *k) {
- struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *p;
- PyObject *o = (*t->tp_alloc)(t, 0);
- if (!o) return 0;
- p = ((struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *)o);
- p->_read = ((struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *)Py_None); Py_INCREF(Py_None);
- p->iv = ((struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *)Py_None); Py_INCREF(Py_None);
- return o;
-}
-
-static void __pyx_tp_dealloc_5HTSeq_6_HTSeq_Alignment(PyObject *o) {
- struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *p = (struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *)o;
- Py_XDECREF(((PyObject *)p->_read));
- Py_XDECREF(((PyObject *)p->iv));
- (*Py_TYPE(o)->tp_free)(o);
-}
-
-static int __pyx_tp_traverse_5HTSeq_6_HTSeq_Alignment(PyObject *o, visitproc v, void *a) {
- int e;
- struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *p = (struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *)o;
- if (p->_read) {
- e = (*v)(((PyObject*)p->_read), a); if (e) return e;
- }
- if (p->iv) {
- e = (*v)(((PyObject*)p->iv), a); if (e) return e;
- }
- return 0;
-}
-
-static int __pyx_tp_clear_5HTSeq_6_HTSeq_Alignment(PyObject *o) {
- struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *p = (struct __pyx_obj_5HTSeq_6_HTSeq_Alignment *)o;
- PyObject* tmp;
- tmp = ((PyObject*)p->_read);
- p->_read = ((struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *)Py_None); Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- tmp = ((PyObject*)p->iv);
- p->iv = ((struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *)Py_None); Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- return 0;
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_9Alignment__read(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_9Alignment_5_read___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_9Alignment__read(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_9Alignment_5_read_1__set__(o, v);
- }
- else {
- return __pyx_pf_5HTSeq_6_HTSeq_9Alignment_5_read_2__del__(o);
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_9Alignment_iv(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_9Alignment_2iv___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_9Alignment_iv(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_9Alignment_2iv_1__set__(o, v);
- }
- else {
- return __pyx_pf_5HTSeq_6_HTSeq_9Alignment_2iv_2__del__(o);
- }
-}
-
-static PyMethodDef __pyx_methods_5HTSeq_6_HTSeq_Alignment[] = {
- {__Pyx_NAMESTR("read"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_9Alignment_1read, METH_NOARGS, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("paired_end"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_9Alignment_3paired_end, METH_NOARGS, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("aligned"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_9Alignment_4aligned, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_5HTSeq_6_HTSeq_9Alignment_4aligned)},
- {0, 0, 0, 0}
-};
-
-static struct PyGetSetDef __pyx_getsets_5HTSeq_6_HTSeq_Alignment[] = {
- {(char *)"_read", __pyx_getprop_5HTSeq_6_HTSeq_9Alignment__read, __pyx_setprop_5HTSeq_6_HTSeq_9Alignment__read, 0, 0},
- {(char *)"iv", __pyx_getprop_5HTSeq_6_HTSeq_9Alignment_iv, __pyx_setprop_5HTSeq_6_HTSeq_9Alignment_iv, 0, 0},
- {0, 0, 0, 0, 0}
-};
-
-static PyNumberMethods __pyx_tp_as_number_Alignment = {
- 0, /*nb_add*/
- 0, /*nb_subtract*/
- 0, /*nb_multiply*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_divide*/
- #endif
- 0, /*nb_remainder*/
- 0, /*nb_divmod*/
- 0, /*nb_power*/
- 0, /*nb_negative*/
- 0, /*nb_positive*/
- 0, /*nb_absolute*/
- 0, /*nb_nonzero*/
- 0, /*nb_invert*/
- 0, /*nb_lshift*/
- 0, /*nb_rshift*/
- 0, /*nb_and*/
- 0, /*nb_xor*/
- 0, /*nb_or*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_coerce*/
- #endif
- 0, /*nb_int*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_long*/
- #else
- 0, /*reserved*/
- #endif
- 0, /*nb_float*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_oct*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_hex*/
- #endif
- 0, /*nb_inplace_add*/
- 0, /*nb_inplace_subtract*/
- 0, /*nb_inplace_multiply*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_inplace_divide*/
- #endif
- 0, /*nb_inplace_remainder*/
- 0, /*nb_inplace_power*/
- 0, /*nb_inplace_lshift*/
- 0, /*nb_inplace_rshift*/
- 0, /*nb_inplace_and*/
- 0, /*nb_inplace_xor*/
- 0, /*nb_inplace_or*/
- 0, /*nb_floor_divide*/
- 0, /*nb_true_divide*/
- 0, /*nb_inplace_floor_divide*/
- 0, /*nb_inplace_true_divide*/
- #if PY_VERSION_HEX >= 0x02050000
- 0, /*nb_index*/
- #endif
-};
-
-static PySequenceMethods __pyx_tp_as_sequence_Alignment = {
- 0, /*sq_length*/
- 0, /*sq_concat*/
- 0, /*sq_repeat*/
- 0, /*sq_item*/
- 0, /*sq_slice*/
- 0, /*sq_ass_item*/
- 0, /*sq_ass_slice*/
- 0, /*sq_contains*/
- 0, /*sq_inplace_concat*/
- 0, /*sq_inplace_repeat*/
-};
-
-static PyMappingMethods __pyx_tp_as_mapping_Alignment = {
- 0, /*mp_length*/
- 0, /*mp_subscript*/
- 0, /*mp_ass_subscript*/
-};
-
-static PyBufferProcs __pyx_tp_as_buffer_Alignment = {
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getreadbuffer*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getwritebuffer*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getsegcount*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getcharbuffer*/
- #endif
- #if PY_VERSION_HEX >= 0x02060000
- 0, /*bf_getbuffer*/
- #endif
- #if PY_VERSION_HEX >= 0x02060000
- 0, /*bf_releasebuffer*/
- #endif
-};
-
-static PyTypeObject __pyx_type_5HTSeq_6_HTSeq_Alignment = {
- PyVarObject_HEAD_INIT(0, 0)
- __Pyx_NAMESTR("HTSeq._HTSeq.Alignment"), /*tp_name*/
- sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_Alignment), /*tp_basicsize*/
- 0, /*tp_itemsize*/
- __pyx_tp_dealloc_5HTSeq_6_HTSeq_Alignment, /*tp_dealloc*/
- 0, /*tp_print*/
- 0, /*tp_getattr*/
- 0, /*tp_setattr*/
- #if PY_MAJOR_VERSION < 3
- 0, /*tp_compare*/
- #else
- 0, /*reserved*/
- #endif
- __pyx_pf_5HTSeq_6_HTSeq_9Alignment_2__repr__, /*tp_repr*/
- &__pyx_tp_as_number_Alignment, /*tp_as_number*/
- &__pyx_tp_as_sequence_Alignment, /*tp_as_sequence*/
- &__pyx_tp_as_mapping_Alignment, /*tp_as_mapping*/
- 0, /*tp_hash*/
- 0, /*tp_call*/
- 0, /*tp_str*/
- 0, /*tp_getattro*/
- 0, /*tp_setattro*/
- &__pyx_tp_as_buffer_Alignment, /*tp_as_buffer*/
- Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
- __Pyx_DOCSTR("Alignment base type:\n\n An alignment object can be defined in different ways but will always\n provide these attributes:\n read: a SequenceWithQualities object with the read\n aligned: whether the read is aligned\n iv: a GenomicInterval object with the alignment position \n "), /*tp_doc*/
- __pyx_tp_traverse_5HTSeq_6_HTSeq_Alignment, /*tp_traverse*/
- __pyx_tp_clear_5HTSeq_6_HTSeq_Alignment, /*tp_clear*/
- 0, /*tp_richcompare*/
- 0, /*tp_weaklistoffset*/
- 0, /*tp_iter*/
- 0, /*tp_iternext*/
- __pyx_methods_5HTSeq_6_HTSeq_Alignment, /*tp_methods*/
- 0, /*tp_members*/
- __pyx_getsets_5HTSeq_6_HTSeq_Alignment, /*tp_getset*/
- 0, /*tp_base*/
- 0, /*tp_dict*/
- 0, /*tp_descr_get*/
- 0, /*tp_descr_set*/
- 0, /*tp_dictoffset*/
- __pyx_pf_5HTSeq_6_HTSeq_9Alignment___init__, /*tp_init*/
- 0, /*tp_alloc*/
- __pyx_tp_new_5HTSeq_6_HTSeq_Alignment, /*tp_new*/
- 0, /*tp_free*/
- 0, /*tp_is_gc*/
- 0, /*tp_bases*/
- 0, /*tp_mro*/
- 0, /*tp_cache*/
- 0, /*tp_subclasses*/
- 0, /*tp_weaklist*/
- 0, /*tp_del*/
- #if PY_VERSION_HEX >= 0x02060000
- 0, /*tp_version_tag*/
- #endif
-};
-
-static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal(PyTypeObject *t, PyObject *a, PyObject *k) {
- struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *p;
- PyObject *o = __pyx_tp_new_5HTSeq_6_HTSeq_Alignment(t, a, k);
- if (!o) return 0;
- p = ((struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *)o);
- p->read_as_aligned = ((struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *)Py_None); Py_INCREF(Py_None);
- p->_read_as_sequenced = ((struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *)Py_None); Py_INCREF(Py_None);
- return o;
-}
-
-static void __pyx_tp_dealloc_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal(PyObject *o) {
- struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *p = (struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *)o;
- Py_XDECREF(((PyObject *)p->read_as_aligned));
- Py_XDECREF(((PyObject *)p->_read_as_sequenced));
- __pyx_tp_dealloc_5HTSeq_6_HTSeq_Alignment(o);
-}
-
-static int __pyx_tp_traverse_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal(PyObject *o, visitproc v, void *a) {
- int e;
- struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *p = (struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *)o;
- e = __pyx_tp_traverse_5HTSeq_6_HTSeq_Alignment(o, v, a); if (e) return e;
- if (p->read_as_aligned) {
- e = (*v)(((PyObject*)p->read_as_aligned), a); if (e) return e;
- }
- if (p->_read_as_sequenced) {
- e = (*v)(((PyObject*)p->_read_as_sequenced), a); if (e) return e;
- }
- return 0;
-}
-
-static int __pyx_tp_clear_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal(PyObject *o) {
- struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *p = (struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal *)o;
- PyObject* tmp;
- __pyx_tp_clear_5HTSeq_6_HTSeq_Alignment(o);
- tmp = ((PyObject*)p->read_as_aligned);
- p->read_as_aligned = ((struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *)Py_None); Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- tmp = ((PyObject*)p->_read_as_sequenced);
- p->_read_as_sequenced = ((struct __pyx_obj_5HTSeq_6_HTSeq_SequenceWithQualities *)Py_None); Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- return 0;
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_read(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_4read___get__(o);
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_read_as_aligned(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_15read_as_aligned___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_read_as_aligned(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_15read_as_aligned_1__set__(o, v);
- }
- else {
- return __pyx_pf_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_15read_as_aligned_2__del__(o);
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal__read_as_sequenced(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_18_read_as_sequenced___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal__read_as_sequenced(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_18_read_as_sequenced_1__set__(o, v);
- }
- else {
- return __pyx_pf_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_18_read_as_sequenced_2__del__(o);
- }
-}
-
-static PyMethodDef __pyx_methods_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal[] = {
- {0, 0, 0, 0}
-};
-
-static struct PyGetSetDef __pyx_getsets_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal[] = {
- {(char *)"read", __pyx_getprop_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_read, 0, 0, 0},
- {(char *)"read_as_aligned", __pyx_getprop_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_read_as_aligned, __pyx_setprop_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal_read_as_aligned, 0, 0},
- {(char *)"_read_as_sequenced", __pyx_getprop_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal__read_as_sequenced, __pyx_setprop_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal__read_as_sequenced, 0, 0},
- {0, 0, 0, 0, 0}
-};
-
-static PyNumberMethods __pyx_tp_as_number_AlignmentWithSequenceReversal = {
- 0, /*nb_add*/
- 0, /*nb_subtract*/
- 0, /*nb_multiply*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_divide*/
- #endif
- 0, /*nb_remainder*/
- 0, /*nb_divmod*/
- 0, /*nb_power*/
- 0, /*nb_negative*/
- 0, /*nb_positive*/
- 0, /*nb_absolute*/
- 0, /*nb_nonzero*/
- 0, /*nb_invert*/
- 0, /*nb_lshift*/
- 0, /*nb_rshift*/
- 0, /*nb_and*/
- 0, /*nb_xor*/
- 0, /*nb_or*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_coerce*/
- #endif
- 0, /*nb_int*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_long*/
- #else
- 0, /*reserved*/
- #endif
- 0, /*nb_float*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_oct*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_hex*/
- #endif
- 0, /*nb_inplace_add*/
- 0, /*nb_inplace_subtract*/
- 0, /*nb_inplace_multiply*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_inplace_divide*/
- #endif
- 0, /*nb_inplace_remainder*/
- 0, /*nb_inplace_power*/
- 0, /*nb_inplace_lshift*/
- 0, /*nb_inplace_rshift*/
- 0, /*nb_inplace_and*/
- 0, /*nb_inplace_xor*/
- 0, /*nb_inplace_or*/
- 0, /*nb_floor_divide*/
- 0, /*nb_true_divide*/
- 0, /*nb_inplace_floor_divide*/
- 0, /*nb_inplace_true_divide*/
- #if PY_VERSION_HEX >= 0x02050000
- 0, /*nb_index*/
- #endif
-};
-
-static PySequenceMethods __pyx_tp_as_sequence_AlignmentWithSequenceReversal = {
- 0, /*sq_length*/
- 0, /*sq_concat*/
- 0, /*sq_repeat*/
- 0, /*sq_item*/
- 0, /*sq_slice*/
- 0, /*sq_ass_item*/
- 0, /*sq_ass_slice*/
- 0, /*sq_contains*/
- 0, /*sq_inplace_concat*/
- 0, /*sq_inplace_repeat*/
-};
-
-static PyMappingMethods __pyx_tp_as_mapping_AlignmentWithSequenceReversal = {
- 0, /*mp_length*/
- 0, /*mp_subscript*/
- 0, /*mp_ass_subscript*/
-};
-
-static PyBufferProcs __pyx_tp_as_buffer_AlignmentWithSequenceReversal = {
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getreadbuffer*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getwritebuffer*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getsegcount*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getcharbuffer*/
- #endif
- #if PY_VERSION_HEX >= 0x02060000
- 0, /*bf_getbuffer*/
- #endif
- #if PY_VERSION_HEX >= 0x02060000
- 0, /*bf_releasebuffer*/
- #endif
-};
-
-static PyTypeObject __pyx_type_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal = {
- PyVarObject_HEAD_INIT(0, 0)
- __Pyx_NAMESTR("HTSeq._HTSeq.AlignmentWithSequenceReversal"), /*tp_name*/
- sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal), /*tp_basicsize*/
- 0, /*tp_itemsize*/
- __pyx_tp_dealloc_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal, /*tp_dealloc*/
- 0, /*tp_print*/
- 0, /*tp_getattr*/
- 0, /*tp_setattr*/
- #if PY_MAJOR_VERSION < 3
- 0, /*tp_compare*/
- #else
- 0, /*reserved*/
- #endif
- 0, /*tp_repr*/
- &__pyx_tp_as_number_AlignmentWithSequenceReversal, /*tp_as_number*/
- &__pyx_tp_as_sequence_AlignmentWithSequenceReversal, /*tp_as_sequence*/
- &__pyx_tp_as_mapping_AlignmentWithSequenceReversal, /*tp_as_mapping*/
- 0, /*tp_hash*/
- 0, /*tp_call*/
- 0, /*tp_str*/
- 0, /*tp_getattro*/
- 0, /*tp_setattro*/
- &__pyx_tp_as_buffer_AlignmentWithSequenceReversal, /*tp_as_buffer*/
- Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
- __Pyx_DOCSTR("Many aligners report the read's sequence in reverse-complemented form\n when it was mapped to the reverse strand. For such alignments, a \n daughter class of this one should be used.\n \n Then, the read is stored as aligned in the 'read_as_aligned' field,\n and get reverse-complemented back to the sequenced form when the 'read'\n attribute is sequenced.\n "), /*tp_doc*/
- __pyx_tp_traverse_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal, /*tp_traverse*/
- __pyx_tp_clear_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal, /*tp_clear*/
- 0, /*tp_richcompare*/
- 0, /*tp_weaklistoffset*/
- 0, /*tp_iter*/
- 0, /*tp_iternext*/
- __pyx_methods_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal, /*tp_methods*/
- 0, /*tp_members*/
- __pyx_getsets_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal, /*tp_getset*/
- 0, /*tp_base*/
- 0, /*tp_dict*/
- 0, /*tp_descr_get*/
- 0, /*tp_descr_set*/
- 0, /*tp_dictoffset*/
- __pyx_pf_5HTSeq_6_HTSeq_29AlignmentWithSequenceReversal___init__, /*tp_init*/
- 0, /*tp_alloc*/
- __pyx_tp_new_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal, /*tp_new*/
- 0, /*tp_free*/
- 0, /*tp_is_gc*/
- 0, /*tp_bases*/
- 0, /*tp_mro*/
- 0, /*tp_cache*/
- 0, /*tp_subclasses*/
- 0, /*tp_weaklist*/
- 0, /*tp_del*/
- #if PY_VERSION_HEX >= 0x02060000
- 0, /*tp_version_tag*/
- #endif
-};
-
-static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_SAM_Alignment(PyTypeObject *t, PyObject *a, PyObject *k) {
- struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *p;
- PyObject *o = __pyx_tp_new_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal(t, a, k);
- if (!o) return 0;
- p = ((struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *)o);
- p->cigar = ((PyObject*)Py_None); Py_INCREF(Py_None);
- p->mate_start = ((struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition *)Py_None); Py_INCREF(Py_None);
- p->pe_which = ((PyObject*)Py_None); Py_INCREF(Py_None);
- p->original_sam_line = ((PyObject*)Py_None); Py_INCREF(Py_None);
- p->optional_fields = ((PyObject*)Py_None); Py_INCREF(Py_None);
- return o;
-}
-
-static void __pyx_tp_dealloc_5HTSeq_6_HTSeq_SAM_Alignment(PyObject *o) {
- struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *p = (struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *)o;
- Py_XDECREF(((PyObject *)p->cigar));
- Py_XDECREF(((PyObject *)p->mate_start));
- Py_XDECREF(((PyObject *)p->pe_which));
- Py_XDECREF(((PyObject *)p->original_sam_line));
- Py_XDECREF(((PyObject *)p->optional_fields));
- __pyx_tp_dealloc_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal(o);
-}
-
-static int __pyx_tp_traverse_5HTSeq_6_HTSeq_SAM_Alignment(PyObject *o, visitproc v, void *a) {
- int e;
- struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *p = (struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *)o;
- e = __pyx_tp_traverse_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal(o, v, a); if (e) return e;
- if (p->cigar) {
- e = (*v)(p->cigar, a); if (e) return e;
- }
- if (p->mate_start) {
- e = (*v)(((PyObject*)p->mate_start), a); if (e) return e;
- }
- if (p->pe_which) {
- e = (*v)(p->pe_which, a); if (e) return e;
- }
- if (p->original_sam_line) {
- e = (*v)(p->original_sam_line, a); if (e) return e;
- }
- if (p->optional_fields) {
- e = (*v)(p->optional_fields, a); if (e) return e;
- }
- return 0;
-}
-
-static int __pyx_tp_clear_5HTSeq_6_HTSeq_SAM_Alignment(PyObject *o) {
- struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *p = (struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment *)o;
- PyObject* tmp;
- __pyx_tp_clear_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal(o);
- tmp = ((PyObject*)p->cigar);
- p->cigar = ((PyObject*)Py_None); Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- tmp = ((PyObject*)p->mate_start);
- p->mate_start = ((struct __pyx_obj_5HTSeq_6_HTSeq_GenomicPosition *)Py_None); Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- tmp = ((PyObject*)p->pe_which);
- p->pe_which = ((PyObject*)Py_None); Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- tmp = ((PyObject*)p->original_sam_line);
- p->original_sam_line = ((PyObject*)Py_None); Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- tmp = ((PyObject*)p->optional_fields);
- p->optional_fields = ((PyObject*)Py_None); Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- return 0;
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_flag(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_4flag___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_flag(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_4flag_1__set__(o, v);
- }
- else {
- PyErr_SetString(PyExc_NotImplementedError, "__del__");
- return -1;
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_cigar(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_5cigar___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_cigar(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_5cigar_1__set__(o, v);
- }
- else {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_5cigar_2__del__(o);
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_aQual(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_5aQual___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_aQual(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_5aQual_1__set__(o, v);
- }
- else {
- PyErr_SetString(PyExc_NotImplementedError, "__del__");
- return -1;
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_mate_start(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_10mate_start___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_mate_start(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_10mate_start_1__set__(o, v);
- }
- else {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_10mate_start_2__del__(o);
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_pe_which(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_8pe_which___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_pe_which(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_8pe_which_1__set__(o, v);
- }
- else {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_8pe_which_2__del__(o);
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_inferred_insert_size(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_20inferred_insert_size___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_inferred_insert_size(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_20inferred_insert_size_1__set__(o, v);
- }
- else {
- PyErr_SetString(PyExc_NotImplementedError, "__del__");
- return -1;
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_proper_pair(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_11proper_pair___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_proper_pair(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_11proper_pair_1__set__(o, v);
- }
- else {
- PyErr_SetString(PyExc_NotImplementedError, "__del__");
- return -1;
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_not_primary_alignment(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_21not_primary_alignment___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_not_primary_alignment(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_21not_primary_alignment_1__set__(o, v);
- }
- else {
- PyErr_SetString(PyExc_NotImplementedError, "__del__");
- return -1;
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_failed_platform_qc(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_18failed_platform_qc___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_failed_platform_qc(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_18failed_platform_qc_1__set__(o, v);
- }
- else {
- PyErr_SetString(PyExc_NotImplementedError, "__del__");
- return -1;
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_pcr_or_optical_duplicate(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_24pcr_or_optical_duplicate___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_pcr_or_optical_duplicate(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_24pcr_or_optical_duplicate_1__set__(o, v);
- }
- else {
- PyErr_SetString(PyExc_NotImplementedError, "__del__");
- return -1;
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_original_sam_line(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_17original_sam_line___get__(o);
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_optional_fields(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_15optional_fields___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_optional_fields(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_15optional_fields_1__set__(o, v);
- }
- else {
- return __pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_15optional_fields_2__del__(o);
- }
-}
-
-static PyMethodDef __pyx_methods_5HTSeq_6_HTSeq_SAM_Alignment[] = {
- {__Pyx_NAMESTR("to_pysam_AlignedRead"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_to_pysam_AlignedRead, METH_O, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("from_pysam_AlignedRead"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_1from_pysam_AlignedRead, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("from_SAM_line"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_2from_SAM_line, METH_O, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("paired_end"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_3paired_end, METH_NOARGS, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("mate_aligned"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_4mate_aligned, METH_NOARGS, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("get_sam_line"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_5get_sam_line, METH_NOARGS, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("optional_field"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_6optional_field, METH_O, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("raw_optional_fields"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_13SAM_Alignment_7raw_optional_fields, METH_NOARGS, __Pyx_DOCSTR(0)},
- {0, 0, 0, 0}
-};
-
-static struct PyGetSetDef __pyx_getsets_5HTSeq_6_HTSeq_SAM_Alignment[] = {
- {(char *)"flag", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_flag, __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_flag, 0, 0},
- {(char *)"cigar", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_cigar, __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_cigar, 0, 0},
- {(char *)"aQual", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_aQual, __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_aQual, 0, 0},
- {(char *)"mate_start", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_mate_start, __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_mate_start, 0, 0},
- {(char *)"pe_which", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_pe_which, __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_pe_which, 0, 0},
- {(char *)"inferred_insert_size", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_inferred_insert_size, __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_inferred_insert_size, 0, 0},
- {(char *)"proper_pair", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_proper_pair, __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_proper_pair, 0, 0},
- {(char *)"not_primary_alignment", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_not_primary_alignment, __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_not_primary_alignment, 0, 0},
- {(char *)"failed_platform_qc", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_failed_platform_qc, __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_failed_platform_qc, 0, 0},
- {(char *)"pcr_or_optical_duplicate", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_pcr_or_optical_duplicate, __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_pcr_or_optical_duplicate, 0, 0},
- {(char *)"original_sam_line", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_original_sam_line, 0, 0, 0},
- {(char *)"optional_fields", __pyx_getprop_5HTSeq_6_HTSeq_13SAM_Alignment_optional_fields, __pyx_setprop_5HTSeq_6_HTSeq_13SAM_Alignment_optional_fields, 0, 0},
- {0, 0, 0, 0, 0}
-};
-
-static PyNumberMethods __pyx_tp_as_number_SAM_Alignment = {
- 0, /*nb_add*/
- 0, /*nb_subtract*/
- 0, /*nb_multiply*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_divide*/
- #endif
- 0, /*nb_remainder*/
- 0, /*nb_divmod*/
- 0, /*nb_power*/
- 0, /*nb_negative*/
- 0, /*nb_positive*/
- 0, /*nb_absolute*/
- 0, /*nb_nonzero*/
- 0, /*nb_invert*/
- 0, /*nb_lshift*/
- 0, /*nb_rshift*/
- 0, /*nb_and*/
- 0, /*nb_xor*/
- 0, /*nb_or*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_coerce*/
- #endif
- 0, /*nb_int*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_long*/
- #else
- 0, /*reserved*/
- #endif
- 0, /*nb_float*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_oct*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_hex*/
- #endif
- 0, /*nb_inplace_add*/
- 0, /*nb_inplace_subtract*/
- 0, /*nb_inplace_multiply*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_inplace_divide*/
- #endif
- 0, /*nb_inplace_remainder*/
- 0, /*nb_inplace_power*/
- 0, /*nb_inplace_lshift*/
- 0, /*nb_inplace_rshift*/
- 0, /*nb_inplace_and*/
- 0, /*nb_inplace_xor*/
- 0, /*nb_inplace_or*/
- 0, /*nb_floor_divide*/
- 0, /*nb_true_divide*/
- 0, /*nb_inplace_floor_divide*/
- 0, /*nb_inplace_true_divide*/
- #if PY_VERSION_HEX >= 0x02050000
- 0, /*nb_index*/
- #endif
-};
-
-static PySequenceMethods __pyx_tp_as_sequence_SAM_Alignment = {
- 0, /*sq_length*/
- 0, /*sq_concat*/
- 0, /*sq_repeat*/
- 0, /*sq_item*/
- 0, /*sq_slice*/
- 0, /*sq_ass_item*/
- 0, /*sq_ass_slice*/
- 0, /*sq_contains*/
- 0, /*sq_inplace_concat*/
- 0, /*sq_inplace_repeat*/
-};
-
-static PyMappingMethods __pyx_tp_as_mapping_SAM_Alignment = {
- 0, /*mp_length*/
- 0, /*mp_subscript*/
- 0, /*mp_ass_subscript*/
-};
-
-static PyBufferProcs __pyx_tp_as_buffer_SAM_Alignment = {
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getreadbuffer*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getwritebuffer*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getsegcount*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getcharbuffer*/
- #endif
- #if PY_VERSION_HEX >= 0x02060000
- 0, /*bf_getbuffer*/
- #endif
- #if PY_VERSION_HEX >= 0x02060000
- 0, /*bf_releasebuffer*/
- #endif
-};
-
-static PyTypeObject __pyx_type_5HTSeq_6_HTSeq_SAM_Alignment = {
- PyVarObject_HEAD_INIT(0, 0)
- __Pyx_NAMESTR("HTSeq._HTSeq.SAM_Alignment"), /*tp_name*/
- sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_SAM_Alignment), /*tp_basicsize*/
- 0, /*tp_itemsize*/
- __pyx_tp_dealloc_5HTSeq_6_HTSeq_SAM_Alignment, /*tp_dealloc*/
- 0, /*tp_print*/
- 0, /*tp_getattr*/
- 0, /*tp_setattr*/
- #if PY_MAJOR_VERSION < 3
- 0, /*tp_compare*/
- #else
- 0, /*reserved*/
- #endif
- 0, /*tp_repr*/
- &__pyx_tp_as_number_SAM_Alignment, /*tp_as_number*/
- &__pyx_tp_as_sequence_SAM_Alignment, /*tp_as_sequence*/
- &__pyx_tp_as_mapping_SAM_Alignment, /*tp_as_mapping*/
- 0, /*tp_hash*/
- 0, /*tp_call*/
- 0, /*tp_str*/
- 0, /*tp_getattro*/
- 0, /*tp_setattro*/
- &__pyx_tp_as_buffer_SAM_Alignment, /*tp_as_buffer*/
- Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
- __Pyx_DOCSTR("When reading in a SAM file, objects of the class SAM_Alignment\n are returned. In addition to the 'read', 'iv' and 'aligned' fields (see \n Alignment class), the following fields are provided:\n - aQual: the alignment quality score\n - cigar: a list of CigarOperatio objects, describing the alignment\n - tags: the extra information tags [not yet implemented]\n "), /*tp_doc*/
- __pyx_tp_traverse_5HTSeq_6_HTSeq_SAM_Alignment, /*tp_traverse*/
- __pyx_tp_clear_5HTSeq_6_HTSeq_SAM_Alignment, /*tp_clear*/
- 0, /*tp_richcompare*/
- 0, /*tp_weaklistoffset*/
- 0, /*tp_iter*/
- 0, /*tp_iternext*/
- __pyx_methods_5HTSeq_6_HTSeq_SAM_Alignment, /*tp_methods*/
- 0, /*tp_members*/
- __pyx_getsets_5HTSeq_6_HTSeq_SAM_Alignment, /*tp_getset*/
- 0, /*tp_base*/
- 0, /*tp_dict*/
- 0, /*tp_descr_get*/
- 0, /*tp_descr_set*/
- 0, /*tp_dictoffset*/
- 0, /*tp_init*/
- 0, /*tp_alloc*/
- __pyx_tp_new_5HTSeq_6_HTSeq_SAM_Alignment, /*tp_new*/
- 0, /*tp_free*/
- 0, /*tp_is_gc*/
- 0, /*tp_bases*/
- 0, /*tp_mro*/
- 0, /*tp_cache*/
- 0, /*tp_subclasses*/
- 0, /*tp_weaklist*/
- 0, /*tp_del*/
- #if PY_VERSION_HEX >= 0x02060000
- 0, /*tp_version_tag*/
- #endif
-};
-
-static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_ChromVector(PyTypeObject *t, PyObject *a, PyObject *k) {
- struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *p;
- PyObject *o = (*t->tp_alloc)(t, 0);
- if (!o) return 0;
- p = ((struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *)o);
- p->array = Py_None; Py_INCREF(Py_None);
- p->iv = ((struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *)Py_None); Py_INCREF(Py_None);
- p->_storage = ((PyObject*)Py_None); Py_INCREF(Py_None);
- return o;
-}
-
-static void __pyx_tp_dealloc_5HTSeq_6_HTSeq_ChromVector(PyObject *o) {
- struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *p = (struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *)o;
- Py_XDECREF(p->array);
- Py_XDECREF(((PyObject *)p->iv));
- Py_XDECREF(((PyObject *)p->_storage));
- (*Py_TYPE(o)->tp_free)(o);
-}
-
-static int __pyx_tp_traverse_5HTSeq_6_HTSeq_ChromVector(PyObject *o, visitproc v, void *a) {
- int e;
- struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *p = (struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *)o;
- if (p->array) {
- e = (*v)(p->array, a); if (e) return e;
- }
- if (p->iv) {
- e = (*v)(((PyObject*)p->iv), a); if (e) return e;
- }
- if (p->_storage) {
- e = (*v)(p->_storage, a); if (e) return e;
- }
- return 0;
-}
-
-static int __pyx_tp_clear_5HTSeq_6_HTSeq_ChromVector(PyObject *o) {
- struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *p = (struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector *)o;
- PyObject* tmp;
- tmp = ((PyObject*)p->array);
- p->array = Py_None; Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- tmp = ((PyObject*)p->iv);
- p->iv = ((struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *)Py_None); Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- tmp = ((PyObject*)p->_storage);
- p->_storage = ((PyObject*)Py_None); Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- return 0;
-}
-static PyObject *__pyx_sq_item_5HTSeq_6_HTSeq_ChromVector(PyObject *o, Py_ssize_t i) {
- PyObject *r;
- PyObject *x = PyInt_FromSsize_t(i); if(!x) return 0;
- r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x);
- Py_DECREF(x);
- return r;
-}
-
-static int __pyx_mp_ass_subscript_5HTSeq_6_HTSeq_ChromVector(PyObject *o, PyObject *i, PyObject *v) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_3__setitem__(o, i, v);
- }
- else {
- PyErr_Format(PyExc_NotImplementedError,
- "Subscript deletion not supported by %s", Py_TYPE(o)->tp_name);
- return -1;
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_11ChromVector_array(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_5array___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_11ChromVector_array(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_5array_1__set__(o, v);
- }
- else {
- return __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_5array_2__del__(o);
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_11ChromVector_iv(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_2iv___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_11ChromVector_iv(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_2iv_1__set__(o, v);
- }
- else {
- return __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_2iv_2__del__(o);
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_11ChromVector_offset(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_6offset___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_11ChromVector_offset(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_6offset_1__set__(o, v);
- }
- else {
- PyErr_SetString(PyExc_NotImplementedError, "__del__");
- return -1;
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_11ChromVector_is_vector_of_sets(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_17is_vector_of_sets___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_11ChromVector_is_vector_of_sets(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_17is_vector_of_sets_1__set__(o, v);
- }
- else {
- PyErr_SetString(PyExc_NotImplementedError, "__del__");
- return -1;
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_11ChromVector__storage(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_8_storage___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_11ChromVector__storage(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_8_storage_1__set__(o, v);
- }
- else {
- return __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_8_storage_2__del__(o);
- }
-}
-
-static PyMethodDef __pyx_methods_5HTSeq_6_HTSeq_ChromVector[] = {
- {__Pyx_NAMESTR("create"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_11ChromVector_create, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("_create_view"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_11ChromVector_1_create_view, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("values"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_11ChromVector_6values, METH_NOARGS, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("steps"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_11ChromVector_7steps, METH_NOARGS, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("apply"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_11ChromVector_8apply, METH_O, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("__reduce__"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_11ChromVector_10__reduce__, METH_NOARGS, __Pyx_DOCSTR(0)},
- {0, 0, 0, 0}
-};
-
-static struct PyGetSetDef __pyx_getsets_5HTSeq_6_HTSeq_ChromVector[] = {
- {(char *)"array", __pyx_getprop_5HTSeq_6_HTSeq_11ChromVector_array, __pyx_setprop_5HTSeq_6_HTSeq_11ChromVector_array, 0, 0},
- {(char *)"iv", __pyx_getprop_5HTSeq_6_HTSeq_11ChromVector_iv, __pyx_setprop_5HTSeq_6_HTSeq_11ChromVector_iv, 0, 0},
- {(char *)"offset", __pyx_getprop_5HTSeq_6_HTSeq_11ChromVector_offset, __pyx_setprop_5HTSeq_6_HTSeq_11ChromVector_offset, 0, 0},
- {(char *)"is_vector_of_sets", __pyx_getprop_5HTSeq_6_HTSeq_11ChromVector_is_vector_of_sets, __pyx_setprop_5HTSeq_6_HTSeq_11ChromVector_is_vector_of_sets, 0, 0},
- {(char *)"_storage", __pyx_getprop_5HTSeq_6_HTSeq_11ChromVector__storage, __pyx_setprop_5HTSeq_6_HTSeq_11ChromVector__storage, 0, 0},
- {0, 0, 0, 0, 0}
-};
-
-static PyNumberMethods __pyx_tp_as_number_ChromVector = {
- 0, /*nb_add*/
- 0, /*nb_subtract*/
- 0, /*nb_multiply*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_divide*/
- #endif
- 0, /*nb_remainder*/
- 0, /*nb_divmod*/
- 0, /*nb_power*/
- 0, /*nb_negative*/
- 0, /*nb_positive*/
- 0, /*nb_absolute*/
- 0, /*nb_nonzero*/
- 0, /*nb_invert*/
- 0, /*nb_lshift*/
- 0, /*nb_rshift*/
- 0, /*nb_and*/
- 0, /*nb_xor*/
- 0, /*nb_or*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_coerce*/
- #endif
- 0, /*nb_int*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_long*/
- #else
- 0, /*reserved*/
- #endif
- 0, /*nb_float*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_oct*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_hex*/
- #endif
- __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_4__iadd__, /*nb_inplace_add*/
- 0, /*nb_inplace_subtract*/
- 0, /*nb_inplace_multiply*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_inplace_divide*/
- #endif
- 0, /*nb_inplace_remainder*/
- 0, /*nb_inplace_power*/
- 0, /*nb_inplace_lshift*/
- 0, /*nb_inplace_rshift*/
- 0, /*nb_inplace_and*/
- 0, /*nb_inplace_xor*/
- 0, /*nb_inplace_or*/
- 0, /*nb_floor_divide*/
- 0, /*nb_true_divide*/
- 0, /*nb_inplace_floor_divide*/
- 0, /*nb_inplace_true_divide*/
- #if PY_VERSION_HEX >= 0x02050000
- 0, /*nb_index*/
- #endif
-};
-
-static PySequenceMethods __pyx_tp_as_sequence_ChromVector = {
- 0, /*sq_length*/
- 0, /*sq_concat*/
- 0, /*sq_repeat*/
- __pyx_sq_item_5HTSeq_6_HTSeq_ChromVector, /*sq_item*/
- 0, /*sq_slice*/
- 0, /*sq_ass_item*/
- 0, /*sq_ass_slice*/
- 0, /*sq_contains*/
- 0, /*sq_inplace_concat*/
- 0, /*sq_inplace_repeat*/
-};
-
-static PyMappingMethods __pyx_tp_as_mapping_ChromVector = {
- 0, /*mp_length*/
- __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_2__getitem__, /*mp_subscript*/
- __pyx_mp_ass_subscript_5HTSeq_6_HTSeq_ChromVector, /*mp_ass_subscript*/
-};
-
-static PyBufferProcs __pyx_tp_as_buffer_ChromVector = {
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getreadbuffer*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getwritebuffer*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getsegcount*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*bf_getcharbuffer*/
- #endif
- #if PY_VERSION_HEX >= 0x02060000
- 0, /*bf_getbuffer*/
- #endif
- #if PY_VERSION_HEX >= 0x02060000
- 0, /*bf_releasebuffer*/
- #endif
-};
-
-static PyTypeObject __pyx_type_5HTSeq_6_HTSeq_ChromVector = {
- PyVarObject_HEAD_INIT(0, 0)
- __Pyx_NAMESTR("HTSeq._HTSeq.ChromVector"), /*tp_name*/
- sizeof(struct __pyx_obj_5HTSeq_6_HTSeq_ChromVector), /*tp_basicsize*/
- 0, /*tp_itemsize*/
- __pyx_tp_dealloc_5HTSeq_6_HTSeq_ChromVector, /*tp_dealloc*/
- 0, /*tp_print*/
- 0, /*tp_getattr*/
- 0, /*tp_setattr*/
- #if PY_MAJOR_VERSION < 3
- 0, /*tp_compare*/
- #else
- 0, /*reserved*/
- #endif
- __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_9__repr__, /*tp_repr*/
- &__pyx_tp_as_number_ChromVector, /*tp_as_number*/
- &__pyx_tp_as_sequence_ChromVector, /*tp_as_sequence*/
- &__pyx_tp_as_mapping_ChromVector, /*tp_as_mapping*/
- 0, /*tp_hash*/
- 0, /*tp_call*/
- 0, /*tp_str*/
- 0, /*tp_getattro*/
- 0, /*tp_setattro*/
- &__pyx_tp_as_buffer_ChromVector, /*tp_as_buffer*/
- Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
- 0, /*tp_doc*/
- __pyx_tp_traverse_5HTSeq_6_HTSeq_ChromVector, /*tp_traverse*/
- __pyx_tp_clear_5HTSeq_6_HTSeq_ChromVector, /*tp_clear*/
- 0, /*tp_richcompare*/
- 0, /*tp_weaklistoffset*/
- __pyx_pf_5HTSeq_6_HTSeq_11ChromVector_5__iter__, /*tp_iter*/
- 0, /*tp_iternext*/
- __pyx_methods_5HTSeq_6_HTSeq_ChromVector, /*tp_methods*/
- 0, /*tp_members*/
- __pyx_getsets_5HTSeq_6_HTSeq_ChromVector, /*tp_getset*/
- 0, /*tp_base*/
- 0, /*tp_dict*/
- 0, /*tp_descr_get*/
- 0, /*tp_descr_set*/
- 0, /*tp_dictoffset*/
- 0, /*tp_init*/
- 0, /*tp_alloc*/
- __pyx_tp_new_5HTSeq_6_HTSeq_ChromVector, /*tp_new*/
- 0, /*tp_free*/
- 0, /*tp_is_gc*/
- 0, /*tp_bases*/
- 0, /*tp_mro*/
- 0, /*tp_cache*/
- 0, /*tp_subclasses*/
- 0, /*tp_weaklist*/
- 0, /*tp_del*/
- #if PY_VERSION_HEX >= 0x02060000
- 0, /*tp_version_tag*/
- #endif
-};
-
-static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_GenomicArray(PyTypeObject *t, PyObject *a, PyObject *k) {
- struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *p;
- PyObject *o = (*t->tp_alloc)(t, 0);
- if (!o) return 0;
- p = ((struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *)o);
- p->chrom_vectors = ((PyObject*)Py_None); Py_INCREF(Py_None);
- p->typecode = ((PyObject*)Py_None); Py_INCREF(Py_None);
- p->storage = ((PyObject*)Py_None); Py_INCREF(Py_None);
- p->memmap_dir = ((PyObject*)Py_None); Py_INCREF(Py_None);
- return o;
-}
-
-static void __pyx_tp_dealloc_5HTSeq_6_HTSeq_GenomicArray(PyObject *o) {
- struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *p = (struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *)o;
- Py_XDECREF(((PyObject *)p->chrom_vectors));
- Py_XDECREF(((PyObject *)p->typecode));
- Py_XDECREF(((PyObject *)p->storage));
- Py_XDECREF(((PyObject *)p->memmap_dir));
- (*Py_TYPE(o)->tp_free)(o);
-}
-
-static int __pyx_tp_traverse_5HTSeq_6_HTSeq_GenomicArray(PyObject *o, visitproc v, void *a) {
- int e;
- struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *p = (struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *)o;
- if (p->chrom_vectors) {
- e = (*v)(p->chrom_vectors, a); if (e) return e;
- }
- if (p->typecode) {
- e = (*v)(p->typecode, a); if (e) return e;
- }
- if (p->storage) {
- e = (*v)(p->storage, a); if (e) return e;
- }
- if (p->memmap_dir) {
- e = (*v)(p->memmap_dir, a); if (e) return e;
- }
- return 0;
-}
-
-static int __pyx_tp_clear_5HTSeq_6_HTSeq_GenomicArray(PyObject *o) {
- struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *p = (struct __pyx_obj_5HTSeq_6_HTSeq_GenomicArray *)o;
- PyObject* tmp;
- tmp = ((PyObject*)p->chrom_vectors);
- p->chrom_vectors = ((PyObject*)Py_None); Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- tmp = ((PyObject*)p->typecode);
- p->typecode = ((PyObject*)Py_None); Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- tmp = ((PyObject*)p->storage);
- p->storage = ((PyObject*)Py_None); Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- tmp = ((PyObject*)p->memmap_dir);
- p->memmap_dir = ((PyObject*)Py_None); Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- return 0;
-}
-static PyObject *__pyx_sq_item_5HTSeq_6_HTSeq_GenomicArray(PyObject *o, Py_ssize_t i) {
- PyObject *r;
- PyObject *x = PyInt_FromSsize_t(i); if(!x) return 0;
- r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x);
- Py_DECREF(x);
- return r;
-}
-
-static int __pyx_mp_ass_subscript_5HTSeq_6_HTSeq_GenomicArray(PyObject *o, PyObject *i, PyObject *v) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_2__setitem__(o, i, v);
- }
- else {
- PyErr_Format(PyExc_NotImplementedError,
- "Subscript deletion not supported by %s", Py_TYPE(o)->tp_name);
- return -1;
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_chrom_vectors(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_13chrom_vectors___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_12GenomicArray_chrom_vectors(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_13chrom_vectors_1__set__(o, v);
- }
- else {
- return __pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_13chrom_vectors_2__del__(o);
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_stranded(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_8stranded___get__(o);
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_typecode(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_8typecode___get__(o);
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_auto_add_chroms(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_15auto_add_chroms___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_12GenomicArray_auto_add_chroms(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_15auto_add_chroms_1__set__(o, v);
- }
- else {
- PyErr_SetString(PyExc_NotImplementedError, "__del__");
- return -1;
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_storage(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_7storage___get__(o);
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_memmap_dir(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_10memmap_dir___get__(o);
-}
-
-static PyMethodDef __pyx_methods_5HTSeq_6_HTSeq_GenomicArray[] = {
- {__Pyx_NAMESTR("add_chrom"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_3add_chrom, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("__reduce__"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_4__reduce__, METH_NOARGS, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("write_bedgraph_file"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_5write_bedgraph_file, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("steps"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_12GenomicArray_6steps, METH_NOARGS, __Pyx_DOCSTR(0)},
- {0, 0, 0, 0}
-};
-
-static struct PyGetSetDef __pyx_getsets_5HTSeq_6_HTSeq_GenomicArray[] = {
- {(char *)"chrom_vectors", __pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_chrom_vectors, __pyx_setprop_5HTSeq_6_HTSeq_12GenomicArray_chrom_vectors, 0, 0},
- {(char *)"stranded", __pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_stranded, 0, 0, 0},
- {(char *)"typecode", __pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_typecode, 0, 0, 0},
- {(char *)"auto_add_chroms", __pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_auto_add_chroms, __pyx_setprop_5HTSeq_6_HTSeq_12GenomicArray_auto_add_chroms, 0, 0},
- {(char *)"storage", __pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_storage, 0, 0, 0},
- {(char *)"memmap_dir", __pyx_getprop_5HTSeq_6_HTSeq_12GenomicArray_memmap_dir, 0, 0, 0},
- {0, 0, 0, 0, 0}
-};
-
-static PyNumberMethods __pyx_tp_as_number_GenomicArray = {
- 0, /*nb_add*/
- 0, /*nb_subtract*/
- 0, /*nb_multiply*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_divide*/
- #endif
- 0, /*nb_remainder*/
- 0, /*nb_divmod*/
- 0, /*nb_power*/
- 0, /*nb_negative*/
- 0, /*nb_positive*/
- 0, /*nb_absolute*/
- 0, /*nb_nonzero*/
- 0, /*nb_invert*/
- 0, /*nb_lshift*/
- 0, /*nb_rshift*/
- 0, /*nb_and*/
- 0, /*nb_xor*/
- 0, /*nb_or*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_coerce*/
- #endif
- 0, /*nb_int*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_long*/
- #else
- 0, /*reserved*/
- #endif
- 0, /*nb_float*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_oct*/
- #endif
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_hex*/
- #endif
- 0, /*nb_inplace_add*/
- 0, /*nb_inplace_subtract*/
- 0, /*nb_inplace_multiply*/
- #if PY_MAJOR_VERSION < 3
- 0, /*nb_inplace_divide*/
- #endif
- 0, /*nb_inplace_remainder*/
- 0, /*nb_inplace_power*/
- 0, /*nb_inplace_lshift*/
- 0, /*nb_inplace_rshift*/
- 0, /*nb_inplace_and*/
- 0, /*nb_inplace_xor*/
- 0, /*nb_inplace_or*/
- 0, /*nb_floor_divide*/
- 0, /*nb_true_divide*/
- 0, /*nb_inplace_floor_divide*/
- 0, /*nb_inplace_true_divide*/
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-
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-
-static PyBufferProcs __pyx_tp_as_buffer_GenomicArray = {
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- #if PY_VERSION_HEX >= 0x02060000
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- #endif
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-
-static PyTypeObject __pyx_type_5HTSeq_6_HTSeq_GenomicArray = {
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- __Pyx_NAMESTR("HTSeq._HTSeq.GenomicArray"), /*tp_name*/
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- __pyx_tp_dealloc_5HTSeq_6_HTSeq_GenomicArray, /*tp_dealloc*/
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- #if PY_MAJOR_VERSION < 3
- 0, /*tp_compare*/
- #else
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- &__pyx_tp_as_buffer_GenomicArray, /*tp_as_buffer*/
- Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
- 0, /*tp_doc*/
- __pyx_tp_traverse_5HTSeq_6_HTSeq_GenomicArray, /*tp_traverse*/
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- __pyx_pf_5HTSeq_6_HTSeq_12GenomicArray___init__, /*tp_init*/
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- #if PY_VERSION_HEX >= 0x02060000
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- #endif
-};
-
-static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_BowtieAlignment(PyTypeObject *t, PyObject *a, PyObject *k) {
- struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment *p;
- PyObject *o = __pyx_tp_new_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal(t, a, k);
- if (!o) return 0;
- p = ((struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment *)o);
- p->reserved = ((PyObject*)Py_None); Py_INCREF(Py_None);
- p->substitutions = ((PyObject*)Py_None); Py_INCREF(Py_None);
- return o;
-}
-
-static void __pyx_tp_dealloc_5HTSeq_6_HTSeq_BowtieAlignment(PyObject *o) {
- struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment *p = (struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment *)o;
- Py_XDECREF(((PyObject *)p->reserved));
- Py_XDECREF(((PyObject *)p->substitutions));
- __pyx_tp_dealloc_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal(o);
-}
-
-static int __pyx_tp_traverse_5HTSeq_6_HTSeq_BowtieAlignment(PyObject *o, visitproc v, void *a) {
- int e;
- struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment *p = (struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment *)o;
- e = __pyx_tp_traverse_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal(o, v, a); if (e) return e;
- if (p->reserved) {
- e = (*v)(p->reserved, a); if (e) return e;
- }
- if (p->substitutions) {
- e = (*v)(p->substitutions, a); if (e) return e;
- }
- return 0;
-}
-
-static int __pyx_tp_clear_5HTSeq_6_HTSeq_BowtieAlignment(PyObject *o) {
- struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment *p = (struct __pyx_obj_5HTSeq_6_HTSeq_BowtieAlignment *)o;
- PyObject* tmp;
- __pyx_tp_clear_5HTSeq_6_HTSeq_AlignmentWithSequenceReversal(o);
- tmp = ((PyObject*)p->reserved);
- p->reserved = ((PyObject*)Py_None); Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- tmp = ((PyObject*)p->substitutions);
- p->substitutions = ((PyObject*)Py_None); Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- return 0;
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15BowtieAlignment_reserved(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_15BowtieAlignment_8reserved___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_15BowtieAlignment_reserved(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_15BowtieAlignment_8reserved_1__set__(o, v);
- }
- else {
- return __pyx_pf_5HTSeq_6_HTSeq_15BowtieAlignment_8reserved_2__del__(o);
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_15BowtieAlignment_substitutions(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_15BowtieAlignment_13substitutions___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_15BowtieAlignment_substitutions(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_15BowtieAlignment_13substitutions_1__set__(o, v);
- }
- else {
- return __pyx_pf_5HTSeq_6_HTSeq_15BowtieAlignment_13substitutions_2__del__(o);
- }
-}
-
-static PyMethodDef __pyx_methods_5HTSeq_6_HTSeq_BowtieAlignment[] = {
- {0, 0, 0, 0}
-};
-
-static struct PyGetSetDef __pyx_getsets_5HTSeq_6_HTSeq_BowtieAlignment[] = {
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- {(char *)"substitutions", __pyx_getprop_5HTSeq_6_HTSeq_15BowtieAlignment_substitutions, __pyx_setprop_5HTSeq_6_HTSeq_15BowtieAlignment_substitutions, 0, 0},
- {0, 0, 0, 0, 0}
-};
-
-static PyNumberMethods __pyx_tp_as_number_BowtieAlignment = {
- 0, /*nb_add*/
- 0, /*nb_subtract*/
- 0, /*nb_multiply*/
- #if PY_MAJOR_VERSION < 3
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- #endif
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-
-static PySequenceMethods __pyx_tp_as_sequence_BowtieAlignment = {
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-
-static PyMappingMethods __pyx_tp_as_mapping_BowtieAlignment = {
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-
-static PyBufferProcs __pyx_tp_as_buffer_BowtieAlignment = {
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- 0, /*bf_releasebuffer*/
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-static PyTypeObject __pyx_type_5HTSeq_6_HTSeq_BowtieAlignment = {
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- __pyx_tp_dealloc_5HTSeq_6_HTSeq_BowtieAlignment, /*tp_dealloc*/
- 0, /*tp_print*/
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- Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
- __Pyx_DOCSTR("When reading in a Bowtie file, objects of the class BowtieAlignment\n are returned. In addition to the 'read' and 'iv' fields (see Alignment\n class), the fields 'reserved' and 'substitutions' are provided. These \n contain the content of the respective columns of the Bowtie output \n \n [A parser for the substitutions field will be added soon.]\n "), /*tp_doc*/
- __pyx_tp_traverse_5HTSeq_6_HTSeq_BowtieAlignment, /*tp_traverse*/
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- __pyx_pf_5HTSeq_6_HTSeq_15BowtieAlignment___init__, /*tp_init*/
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-};
-
-static PyObject *__pyx_tp_new_5HTSeq_6_HTSeq_CigarOperation(PyTypeObject *t, PyObject *a, PyObject *k) {
- struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *p;
- PyObject *o = (*t->tp_alloc)(t, 0);
- if (!o) return 0;
- p = ((struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *)o);
- p->type = ((PyObject*)Py_None); Py_INCREF(Py_None);
- p->ref_iv = ((struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *)Py_None); Py_INCREF(Py_None);
- return o;
-}
-
-static void __pyx_tp_dealloc_5HTSeq_6_HTSeq_CigarOperation(PyObject *o) {
- struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *p = (struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *)o;
- Py_XDECREF(((PyObject *)p->type));
- Py_XDECREF(((PyObject *)p->ref_iv));
- (*Py_TYPE(o)->tp_free)(o);
-}
-
-static int __pyx_tp_traverse_5HTSeq_6_HTSeq_CigarOperation(PyObject *o, visitproc v, void *a) {
- int e;
- struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *p = (struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *)o;
- if (p->type) {
- e = (*v)(p->type, a); if (e) return e;
- }
- if (p->ref_iv) {
- e = (*v)(((PyObject*)p->ref_iv), a); if (e) return e;
- }
- return 0;
-}
-
-static int __pyx_tp_clear_5HTSeq_6_HTSeq_CigarOperation(PyObject *o) {
- struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *p = (struct __pyx_obj_5HTSeq_6_HTSeq_CigarOperation *)o;
- PyObject* tmp;
- tmp = ((PyObject*)p->type);
- p->type = ((PyObject*)Py_None); Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- tmp = ((PyObject*)p->ref_iv);
- p->ref_iv = ((struct __pyx_obj_5HTSeq_6_HTSeq_GenomicInterval *)Py_None); Py_INCREF(Py_None);
- Py_XDECREF(tmp);
- return 0;
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_14CigarOperation_type(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_14CigarOperation_4type___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_14CigarOperation_type(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_14CigarOperation_4type_1__set__(o, v);
- }
- else {
- return __pyx_pf_5HTSeq_6_HTSeq_14CigarOperation_4type_2__del__(o);
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_14CigarOperation_size(PyObject *o, void *x) {
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-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_14CigarOperation_size(PyObject *o, PyObject *v, void *x) {
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- return __pyx_pf_5HTSeq_6_HTSeq_14CigarOperation_4size_1__set__(o, v);
- }
- else {
- PyErr_SetString(PyExc_NotImplementedError, "__del__");
- return -1;
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_14CigarOperation_ref_iv(PyObject *o, void *x) {
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-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_14CigarOperation_ref_iv(PyObject *o, PyObject *v, void *x) {
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- }
- else {
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- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_14CigarOperation_query_from(PyObject *o, void *x) {
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-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_14CigarOperation_query_from(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_14CigarOperation_10query_from_1__set__(o, v);
- }
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- PyErr_SetString(PyExc_NotImplementedError, "__del__");
- return -1;
- }
-}
-
-static PyObject *__pyx_getprop_5HTSeq_6_HTSeq_14CigarOperation_query_to(PyObject *o, void *x) {
- return __pyx_pf_5HTSeq_6_HTSeq_14CigarOperation_8query_to___get__(o);
-}
-
-static int __pyx_setprop_5HTSeq_6_HTSeq_14CigarOperation_query_to(PyObject *o, PyObject *v, void *x) {
- if (v) {
- return __pyx_pf_5HTSeq_6_HTSeq_14CigarOperation_8query_to_1__set__(o, v);
- }
- else {
- PyErr_SetString(PyExc_NotImplementedError, "__del__");
- return -1;
- }
-}
-
-static PyMethodDef __pyx_methods_5HTSeq_6_HTSeq_CigarOperation[] = {
- {__Pyx_NAMESTR("check"), (PyCFunction)__pyx_pf_5HTSeq_6_HTSeq_14CigarOperation_2check, METH_NOARGS, __Pyx_DOCSTR(0)},
- {0, 0, 0, 0}
-};
-
-static struct PyGetSetDef __pyx_getsets_5HTSeq_6_HTSeq_CigarOperation[] = {
- {(char *)"type", __pyx_getprop_5HTSeq_6_HTSeq_14CigarOperation_type, __pyx_setprop_5HTSeq_6_HTSeq_14CigarOperation_type, 0, 0},
- {(char *)"size", __pyx_getprop_5HTSeq_6_HTSeq_14CigarOperation_size, __pyx_setprop_5HTSeq_6_HTSeq_14CigarOperation_size, 0, 0},
- {(char *)"ref_iv", __pyx_getprop_5HTSeq_6_HTSeq_14CigarOperation_ref_iv, __pyx_setprop_5HTSeq_6_HTSeq_14CigarOperation_ref_iv, 0, 0},
- {(char *)"query_from", __pyx_getprop_5HTSeq_6_HTSeq_14CigarOperation_query_from, __pyx_setprop_5HTSeq_6_HTSeq_14CigarOperation_query_from, 0, 0},
- {(char *)"query_to", __pyx_getprop_5HTSeq_6_HTSeq_14CigarOperation_query_to, __pyx_setprop_5HTSeq_6_HTSeq_14CigarOperation_query_to, 0, 0},
- {0, 0, 0, 0, 0}
-};
-
-static PyNumberMethods __pyx_tp_as_number_CigarOperation = {
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- #if PY_MAJOR_VERSION < 3
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- 0, /*nb_inplace_true_divide*/
- #if PY_VERSION_HEX >= 0x02050000
- 0, /*nb_index*/
- #endif
-};
-
-static PySequenceMethods __pyx_tp_as_sequence_CigarOperation = {
- 0, /*sq_length*/
- 0, /*sq_concat*/
- 0, /*sq_repeat*/
- 0, /*sq_item*/
- 0, /*sq_slice*/
- 0, /*sq_ass_item*/
- 0, /*sq_ass_slice*/
- 0, /*sq_contains*/
- 0, /*sq_inplace_concat*/
- 0, /*sq_inplace_repeat*/
-};
-
-static PyMappingMethods __pyx_tp_as_mapping_CigarOperation = {
- 0, /*mp_length*/
- 0, /*mp_subscript*/
- 0, /*mp_ass_subscript*/
-};
-
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-static PyObject *__Pyx_GetName(PyObject *dict, PyObject *name) {
- PyObject *result;
- result = PyObject_GetAttr(dict, name);
- if (!result) {
- if (dict != __pyx_b) {
- PyErr_Clear();
- result = PyObject_GetAttr(__pyx_b, name);
- }
- if (!result) {
- PyErr_SetObject(PyExc_NameError, name);
- }
- }
- return result;
-}
-
-static void __Pyx_RaiseArgtupleInvalid(
- const char* func_name,
- int exact,
- Py_ssize_t num_min,
- Py_ssize_t num_max,
- Py_ssize_t num_found)
-{
- Py_ssize_t num_expected;
- const char *more_or_less;
-
- if (num_found < num_min) {
- num_expected = num_min;
- more_or_less = "at least";
- } else {
- num_expected = num_max;
- more_or_less = "at most";
- }
- if (exact) {
- more_or_less = "exactly";
- }
- PyErr_Format(PyExc_TypeError,
- "%s() takes %s %"PY_FORMAT_SIZE_T"d positional argument%s (%"PY_FORMAT_SIZE_T"d given)",
- func_name, more_or_less, num_expected,
- (num_expected == 1) ? "" : "s", num_found);
-}
-
-static void __Pyx_RaiseDoubleKeywordsError(
- const char* func_name,
- PyObject* kw_name)
-{
- PyErr_Format(PyExc_TypeError,
- #if PY_MAJOR_VERSION >= 3
- "%s() got multiple values for keyword argument '%U'", func_name, kw_name);
- #else
- "%s() got multiple values for keyword argument '%s'", func_name,
- PyString_AS_STRING(kw_name));
- #endif
-}
-
-static int __Pyx_ParseOptionalKeywords(
- PyObject *kwds,
- PyObject **argnames[],
- PyObject *kwds2,
- PyObject *values[],
- Py_ssize_t num_pos_args,
- const char* function_name)
-{
- PyObject *key = 0, *value = 0;
- Py_ssize_t pos = 0;
- PyObject*** name;
- PyObject*** first_kw_arg = argnames + num_pos_args;
-
- while (PyDict_Next(kwds, &pos, &key, &value)) {
- name = first_kw_arg;
- while (*name && (**name != key)) name++;
- if (*name) {
- values[name-argnames] = value;
- } else {
- #if PY_MAJOR_VERSION < 3
- if (unlikely(!PyString_CheckExact(key)) && unlikely(!PyString_Check(key))) {
- #else
- if (unlikely(!PyUnicode_CheckExact(key)) && unlikely(!PyUnicode_Check(key))) {
- #endif
- goto invalid_keyword_type;
- } else {
- for (name = first_kw_arg; *name; name++) {
- #if PY_MAJOR_VERSION >= 3
- if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) &&
- PyUnicode_Compare(**name, key) == 0) break;
- #else
- if (PyString_GET_SIZE(**name) == PyString_GET_SIZE(key) &&
- _PyString_Eq(**name, key)) break;
- #endif
- }
- if (*name) {
- values[name-argnames] = value;
- } else {
- /* unexpected keyword found */
- for (name=argnames; name != first_kw_arg; name++) {
- if (**name == key) goto arg_passed_twice;
- #if PY_MAJOR_VERSION >= 3
- if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) &&
- PyUnicode_Compare(**name, key) == 0) goto arg_passed_twice;
- #else
- if (PyString_GET_SIZE(**name) == PyString_GET_SIZE(key) &&
- _PyString_Eq(**name, key)) goto arg_passed_twice;
- #endif
- }
- if (kwds2) {
- if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad;
- } else {
- goto invalid_keyword;
- }
- }
- }
- }
- }
- return 0;
-arg_passed_twice:
- __Pyx_RaiseDoubleKeywordsError(function_name, **name);
- goto bad;
-invalid_keyword_type:
- PyErr_Format(PyExc_TypeError,
- "%s() keywords must be strings", function_name);
- goto bad;
-invalid_keyword:
- PyErr_Format(PyExc_TypeError,
- #if PY_MAJOR_VERSION < 3
- "%s() got an unexpected keyword argument '%s'",
- function_name, PyString_AsString(key));
- #else
- "%s() got an unexpected keyword argument '%U'",
- function_name, key);
- #endif
-bad:
- return -1;
-}
-
-static int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed,
- const char *name, int exact)
-{
- if (!type) {
- PyErr_Format(PyExc_SystemError, "Missing type object");
- return 0;
- }
- if (none_allowed && obj == Py_None) return 1;
- else if (exact) {
- if (Py_TYPE(obj) == type) return 1;
- }
- else {
- if (PyObject_TypeCheck(obj, type)) return 1;
- }
- PyErr_Format(PyExc_TypeError,
- "Argument '%s' has incorrect type (expected %s, got %s)",
- name, type->tp_name, Py_TYPE(obj)->tp_name);
- return 0;
-}
-
-static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb) {
- PyObject *tmp_type, *tmp_value, *tmp_tb;
- PyThreadState *tstate = PyThreadState_GET();
-
- tmp_type = tstate->curexc_type;
- tmp_value = tstate->curexc_value;
- tmp_tb = tstate->curexc_traceback;
- tstate->curexc_type = type;
- tstate->curexc_value = value;
- tstate->curexc_traceback = tb;
- Py_XDECREF(tmp_type);
- Py_XDECREF(tmp_value);
- Py_XDECREF(tmp_tb);
-}
-
-static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb) {
- PyThreadState *tstate = PyThreadState_GET();
- *type = tstate->curexc_type;
- *value = tstate->curexc_value;
- *tb = tstate->curexc_traceback;
-
- tstate->curexc_type = 0;
- tstate->curexc_value = 0;
- tstate->curexc_traceback = 0;
-}
-
-
-#if PY_MAJOR_VERSION < 3
-static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) {
- /* cause is unused */
- Py_XINCREF(type);
- Py_XINCREF(value);
- Py_XINCREF(tb);
- /* First, check the traceback argument, replacing None with NULL. */
- if (tb == Py_None) {
- Py_DECREF(tb);
- tb = 0;
- }
- else if (tb != NULL && !PyTraceBack_Check(tb)) {
- PyErr_SetString(PyExc_TypeError,
- "raise: arg 3 must be a traceback or None");
- goto raise_error;
- }
- /* Next, replace a missing value with None */
- if (value == NULL) {
- value = Py_None;
- Py_INCREF(value);
- }
- #if PY_VERSION_HEX < 0x02050000
- if (!PyClass_Check(type))
- #else
- if (!PyType_Check(type))
- #endif
- {
- /* Raising an instance. The value should be a dummy. */
- if (value != Py_None) {
- PyErr_SetString(PyExc_TypeError,
- "instance exception may not have a separate value");
- goto raise_error;
- }
- /* Normalize to raise <class>, <instance> */
- Py_DECREF(value);
- value = type;
- #if PY_VERSION_HEX < 0x02050000
- if (PyInstance_Check(type)) {
- type = (PyObject*) ((PyInstanceObject*)type)->in_class;
- Py_INCREF(type);
- }
- else {
- type = 0;
- PyErr_SetString(PyExc_TypeError,
- "raise: exception must be an old-style class or instance");
- goto raise_error;
- }
- #else
- type = (PyObject*) Py_TYPE(type);
- Py_INCREF(type);
- if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) {
- PyErr_SetString(PyExc_TypeError,
- "raise: exception class must be a subclass of BaseException");
- goto raise_error;
- }
- #endif
- }
-
- __Pyx_ErrRestore(type, value, tb);
- return;
-raise_error:
- Py_XDECREF(value);
- Py_XDECREF(type);
- Py_XDECREF(tb);
- return;
-}
-
-#else /* Python 3+ */
-
-static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) {
- if (tb == Py_None) {
- tb = 0;
- } else if (tb && !PyTraceBack_Check(tb)) {
- PyErr_SetString(PyExc_TypeError,
- "raise: arg 3 must be a traceback or None");
- goto bad;
- }
- if (value == Py_None)
- value = 0;
-
- if (PyExceptionInstance_Check(type)) {
- if (value) {
- PyErr_SetString(PyExc_TypeError,
- "instance exception may not have a separate value");
- goto bad;
- }
- value = type;
- type = (PyObject*) Py_TYPE(value);
- } else if (!PyExceptionClass_Check(type)) {
- PyErr_SetString(PyExc_TypeError,
- "raise: exception class must be a subclass of BaseException");
- goto bad;
- }
-
- if (cause) {
- PyObject *fixed_cause;
- if (PyExceptionClass_Check(cause)) {
- fixed_cause = PyObject_CallObject(cause, NULL);
- if (fixed_cause == NULL)
- goto bad;
- }
- else if (PyExceptionInstance_Check(cause)) {
- fixed_cause = cause;
- Py_INCREF(fixed_cause);
- }
- else {
- PyErr_SetString(PyExc_TypeError,
- "exception causes must derive from "
- "BaseException");
- goto bad;
- }
- if (!value) {
- value = PyObject_CallObject(type, NULL);
- }
- PyException_SetCause(value, fixed_cause);
- }
-
- PyErr_SetObject(type, value);
-
- if (tb) {
- PyThreadState *tstate = PyThreadState_GET();
- PyObject* tmp_tb = tstate->curexc_traceback;
- if (tb != tmp_tb) {
- Py_INCREF(tb);
- tstate->curexc_traceback = tb;
- Py_XDECREF(tmp_tb);
- }
- }
-
-bad:
- return;
-}
-#endif
-
-static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) {
- PyErr_Format(PyExc_ValueError,
- "need more than %"PY_FORMAT_SIZE_T"d value%s to unpack",
- index, (index == 1) ? "" : "s");
-}
-
-static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) {
- PyErr_Format(PyExc_ValueError,
- "too many values to unpack (expected %"PY_FORMAT_SIZE_T"d)", expected);
-}
-
-static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) {
- if (unlikely(retval)) {
- Py_DECREF(retval);
- __Pyx_RaiseTooManyValuesError(expected);
- return -1;
- } else if (PyErr_Occurred()) {
- if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) {
- PyErr_Clear();
- return 0;
- } else {
- return -1;
- }
- }
- return 0;
-}
-
-static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname) {
- PyErr_Format(PyExc_UnboundLocalError, "local variable '%s' referenced before assignment", varname);
-}
-
-
-static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) {
- if (unlikely(!type)) {
- PyErr_Format(PyExc_SystemError, "Missing type object");
- return 0;
- }
- if (likely(PyObject_TypeCheck(obj, type)))
- return 1;
- PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s",
- Py_TYPE(obj)->tp_name, type->tp_name);
- return 0;
-}
-
-static CYTHON_INLINE void __Pyx_RaiseClosureNameError(const char *varname) {
- PyErr_Format(PyExc_NameError, "free variable '%s' referenced before assignment in enclosing scope", varname);
-}
-
-static CYTHON_INLINE void __Pyx_RaiseNoneIndexingError(void) {
- PyErr_SetString(PyExc_TypeError, "'NoneType' object is unsubscriptable");
-}
-
-static int __Pyx_PyUnicode_Tailmatch(PyObject* s, PyObject* substr,
- Py_ssize_t start, Py_ssize_t end, int direction) {
- if (unlikely(PyTuple_Check(substr))) {
- int result;
- Py_ssize_t i;
- for (i = 0; i < PyTuple_GET_SIZE(substr); i++) {
- result = PyUnicode_Tailmatch(s, PyTuple_GET_ITEM(substr, i),
- start, end, direction);
- if (result) {
- return result;
- }
- }
- return 0;
- }
- return PyUnicode_Tailmatch(s, substr, start, end, direction);
-}
-
-static int __Pyx_PyBytes_SingleTailmatch(PyObject* self, PyObject* arg, Py_ssize_t start,
- Py_ssize_t end, int direction)
-{
- const char* self_ptr = PyBytes_AS_STRING(self);
- Py_ssize_t self_len = PyBytes_GET_SIZE(self);
- const char* sub_ptr;
- Py_ssize_t sub_len;
- int retval;
-
-#if PY_VERSION_HEX >= 0x02060000
- Py_buffer view;
- view.obj = NULL;
-#endif
-
- if ( PyBytes_Check(arg) ) {
- sub_ptr = PyBytes_AS_STRING(arg);
- sub_len = PyBytes_GET_SIZE(arg);
- }
-#if PY_MAJOR_VERSION < 3
- // Python 2.x allows mixing unicode and str
- else if ( PyUnicode_Check(arg) ) {
- return PyUnicode_Tailmatch(self, arg, start, end, direction);
- }
-#endif
- else {
-#if PY_VERSION_HEX < 0x02060000
- if (unlikely(PyObject_AsCharBuffer(arg, &sub_ptr, &sub_len)))
- return -1;
-#else
- if (unlikely(PyObject_GetBuffer(self, &view, PyBUF_SIMPLE) == -1))
- return -1;
- sub_ptr = (const char*) view.buf;
- sub_len = view.len;
-#endif
- }
-
- if (end > self_len)
- end = self_len;
- else if (end < 0)
- end += self_len;
- if (end < 0)
- end = 0;
- if (start < 0)
- start += self_len;
- if (start < 0)
- start = 0;
-
- if (direction > 0) {
- /* endswith */
- if (end-sub_len > start)
- start = end - sub_len;
- }
-
- if (start + sub_len <= end)
- retval = !memcmp(self_ptr+start, sub_ptr, sub_len);
- else
- retval = 0;
-
-#if PY_VERSION_HEX >= 0x02060000
- if (view.obj)
- PyBuffer_Release(&view);
-#endif
-
- return retval;
-}
-
-static int __Pyx_PyBytes_Tailmatch(PyObject* self, PyObject* substr, Py_ssize_t start,
- Py_ssize_t end, int direction)
-{
- if (unlikely(PyTuple_Check(substr))) {
- int result;
- Py_ssize_t i;
- for (i = 0; i < PyTuple_GET_SIZE(substr); i++) {
- result = __Pyx_PyBytes_SingleTailmatch(self, PyTuple_GET_ITEM(substr, i),
- start, end, direction);
- if (result) {
- return result;
- }
- }
- return 0;
- }
-
- return __Pyx_PyBytes_SingleTailmatch(self, substr, start, end, direction);
-}
-
-
-static CYTHON_INLINE int __Pyx_PyStr_Tailmatch(PyObject* self, PyObject* arg, Py_ssize_t start,
- Py_ssize_t end, int direction)
-{
- if (PY_MAJOR_VERSION < 3)
- return __Pyx_PyBytes_Tailmatch(self, arg, start, end, direction);
- else
- return __Pyx_PyUnicode_Tailmatch(self, arg, start, end, direction);
-}
-
-static CYTHON_INLINE int __Pyx_IsLittleEndian(void) {
- unsigned int n = 1;
- return *(unsigned char*)(&n) != 0;
-}
-
-typedef struct {
- __Pyx_StructField root;
- __Pyx_BufFmt_StackElem* head;
- size_t fmt_offset;
- size_t new_count, enc_count;
- int is_complex;
- char enc_type;
- char new_packmode;
- char enc_packmode;
-} __Pyx_BufFmt_Context;
-
-static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx,
- __Pyx_BufFmt_StackElem* stack,
- __Pyx_TypeInfo* type) {
- stack[0].field = &ctx->root;
- stack[0].parent_offset = 0;
- ctx->root.type = type;
- ctx->root.name = "buffer dtype";
- ctx->root.offset = 0;
- ctx->head = stack;
- ctx->head->field = &ctx->root;
- ctx->fmt_offset = 0;
- ctx->head->parent_offset = 0;
- ctx->new_packmode = '@';
- ctx->enc_packmode = '@';
- ctx->new_count = 1;
- ctx->enc_count = 0;
- ctx->enc_type = 0;
- ctx->is_complex = 0;
- while (type->typegroup == 'S') {
- ++ctx->head;
- ctx->head->field = type->fields;
- ctx->head->parent_offset = 0;
- type = type->fields->type;
- }
-}
-
-static int __Pyx_BufFmt_ParseNumber(const char** ts) {
- int count;
- const char* t = *ts;
- if (*t < '0' || *t > '9') {
- return -1;
- } else {
- count = *t++ - '0';
- while (*t >= '0' && *t < '9') {
- count *= 10;
- count += *t++ - '0';
- }
- }
- *ts = t;
- return count;
-}
-
-static void __Pyx_BufFmt_RaiseUnexpectedChar(char ch) {
- PyErr_Format(PyExc_ValueError,
- "Unexpected format string character: '%c'", ch);
-}
-
-static const char* __Pyx_BufFmt_DescribeTypeChar(char ch, int is_complex) {
- switch (ch) {
- case 'b': return "'char'";
- case 'B': return "'unsigned char'";
- case 'h': return "'short'";
- case 'H': return "'unsigned short'";
- case 'i': return "'int'";
- case 'I': return "'unsigned int'";
- case 'l': return "'long'";
- case 'L': return "'unsigned long'";
- case 'q': return "'long long'";
- case 'Q': return "'unsigned long long'";
- case 'f': return (is_complex ? "'complex float'" : "'float'");
- case 'd': return (is_complex ? "'complex double'" : "'double'");
- case 'g': return (is_complex ? "'complex long double'" : "'long double'");
- case 'T': return "a struct";
- case 'O': return "Python object";
- case 'P': return "a pointer";
- case 0: return "end";
- default: return "unparseable format string";
- }
-}
-
-static size_t __Pyx_BufFmt_TypeCharToStandardSize(char ch, int is_complex) {
- switch (ch) {
- case '?': case 'c': case 'b': case 'B': return 1;
- case 'h': case 'H': return 2;
- case 'i': case 'I': case 'l': case 'L': return 4;
- case 'q': case 'Q': return 8;
- case 'f': return (is_complex ? 8 : 4);
- case 'd': return (is_complex ? 16 : 8);
- case 'g': {
- PyErr_SetString(PyExc_ValueError, "Python does not define a standard format string size for long double ('g')..");
- return 0;
- }
- case 'O': case 'P': return sizeof(void*);
- default:
- __Pyx_BufFmt_RaiseUnexpectedChar(ch);
- return 0;
- }
-}
-
-static size_t __Pyx_BufFmt_TypeCharToNativeSize(char ch, int is_complex) {
- switch (ch) {
- case 'c': case 'b': case 'B': return 1;
- case 'h': case 'H': return sizeof(short);
- case 'i': case 'I': return sizeof(int);
- case 'l': case 'L': return sizeof(long);
- #ifdef HAVE_LONG_LONG
- case 'q': case 'Q': return sizeof(PY_LONG_LONG);
- #endif
- case 'f': return sizeof(float) * (is_complex ? 2 : 1);
- case 'd': return sizeof(double) * (is_complex ? 2 : 1);
- case 'g': return sizeof(long double) * (is_complex ? 2 : 1);
- case 'O': case 'P': return sizeof(void*);
- default: {
- __Pyx_BufFmt_RaiseUnexpectedChar(ch);
- return 0;
- }
- }
-}
-
-typedef struct { char c; short x; } __Pyx_st_short;
-typedef struct { char c; int x; } __Pyx_st_int;
-typedef struct { char c; long x; } __Pyx_st_long;
-typedef struct { char c; float x; } __Pyx_st_float;
-typedef struct { char c; double x; } __Pyx_st_double;
-typedef struct { char c; long double x; } __Pyx_st_longdouble;
-typedef struct { char c; void *x; } __Pyx_st_void_p;
-#ifdef HAVE_LONG_LONG
-typedef struct { char c; PY_LONG_LONG x; } __Pyx_st_longlong;
-#endif
-
-static size_t __Pyx_BufFmt_TypeCharToAlignment(char ch, int is_complex) {
- switch (ch) {
- case '?': case 'c': case 'b': case 'B': return 1;
- case 'h': case 'H': return sizeof(__Pyx_st_short) - sizeof(short);
- case 'i': case 'I': return sizeof(__Pyx_st_int) - sizeof(int);
- case 'l': case 'L': return sizeof(__Pyx_st_long) - sizeof(long);
-#ifdef HAVE_LONG_LONG
- case 'q': case 'Q': return sizeof(__Pyx_st_longlong) - sizeof(PY_LONG_LONG);
-#endif
- case 'f': return sizeof(__Pyx_st_float) - sizeof(float);
- case 'd': return sizeof(__Pyx_st_double) - sizeof(double);
- case 'g': return sizeof(__Pyx_st_longdouble) - sizeof(long double);
- case 'P': case 'O': return sizeof(__Pyx_st_void_p) - sizeof(void*);
- default:
- __Pyx_BufFmt_RaiseUnexpectedChar(ch);
- return 0;
- }
-}
-
-static char __Pyx_BufFmt_TypeCharToGroup(char ch, int is_complex) {
- switch (ch) {
- case 'c': case 'b': case 'h': case 'i': case 'l': case 'q': return 'I';
- case 'B': case 'H': case 'I': case 'L': case 'Q': return 'U';
- case 'f': case 'd': case 'g': return (is_complex ? 'C' : 'R');
- case 'O': return 'O';
- case 'P': return 'P';
- default: {
- __Pyx_BufFmt_RaiseUnexpectedChar(ch);
- return 0;
- }
- }
-}
-
-static void __Pyx_BufFmt_RaiseExpected(__Pyx_BufFmt_Context* ctx) {
- if (ctx->head == NULL || ctx->head->field == &ctx->root) {
- const char* expected;
- const char* quote;
- if (ctx->head == NULL) {
- expected = "end";
- quote = "";
- } else {
- expected = ctx->head->field->type->name;
- quote = "'";
- }
- PyErr_Format(PyExc_ValueError,
- "Buffer dtype mismatch, expected %s%s%s but got %s",
- quote, expected, quote,
- __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex));
- } else {
- __Pyx_StructField* field = ctx->head->field;
- __Pyx_StructField* parent = (ctx->head - 1)->field;
- PyErr_Format(PyExc_ValueError,
- "Buffer dtype mismatch, expected '%s' but got %s in '%s.%s'",
- field->type->name, __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex),
- parent->type->name, field->name);
- }
-}
-
-static int __Pyx_BufFmt_ProcessTypeChunk(__Pyx_BufFmt_Context* ctx) {
- char group;
- size_t size, offset;
- if (ctx->enc_type == 0) return 0;
- group = __Pyx_BufFmt_TypeCharToGroup(ctx->enc_type, ctx->is_complex);
- do {
- __Pyx_StructField* field = ctx->head->field;
- __Pyx_TypeInfo* type = field->type;
-
- if (ctx->enc_packmode == '@' || ctx->enc_packmode == '^') {
- size = __Pyx_BufFmt_TypeCharToNativeSize(ctx->enc_type, ctx->is_complex);
- } else {
- size = __Pyx_BufFmt_TypeCharToStandardSize(ctx->enc_type, ctx->is_complex);
- }
- if (ctx->enc_packmode == '@') {
- size_t align_at = __Pyx_BufFmt_TypeCharToAlignment(ctx->enc_type, ctx->is_complex);
- size_t align_mod_offset;
- if (align_at == 0) return -1;
- align_mod_offset = ctx->fmt_offset % align_at;
- if (align_mod_offset > 0) ctx->fmt_offset += align_at - align_mod_offset;
- }
-
- if (type->size != size || type->typegroup != group) {
- if (type->typegroup == 'C' && type->fields != NULL) {
- /* special case -- treat as struct rather than complex number */
- size_t parent_offset = ctx->head->parent_offset + field->offset;
- ++ctx->head;
- ctx->head->field = type->fields;
- ctx->head->parent_offset = parent_offset;
- continue;
- }
-
- __Pyx_BufFmt_RaiseExpected(ctx);
- return -1;
- }
-
- offset = ctx->head->parent_offset + field->offset;
- if (ctx->fmt_offset != offset) {
- PyErr_Format(PyExc_ValueError,
- "Buffer dtype mismatch; next field is at offset %"PY_FORMAT_SIZE_T"d but %"PY_FORMAT_SIZE_T"d expected",
- (Py_ssize_t)ctx->fmt_offset, (Py_ssize_t)offset);
- return -1;
- }
-
- ctx->fmt_offset += size;
-
- --ctx->enc_count; /* Consume from buffer string */
-
- /* Done checking, move to next field, pushing or popping struct stack if needed */
- while (1) {
- if (field == &ctx->root) {
- ctx->head = NULL;
- if (ctx->enc_count != 0) {
- __Pyx_BufFmt_RaiseExpected(ctx);
- return -1;
- }
- break; /* breaks both loops as ctx->enc_count == 0 */
- }
- ctx->head->field = ++field;
- if (field->type == NULL) {
- --ctx->head;
- field = ctx->head->field;
- continue;
- } else if (field->type->typegroup == 'S') {
- size_t parent_offset = ctx->head->parent_offset + field->offset;
- if (field->type->fields->type == NULL) continue; /* empty struct */
- field = field->type->fields;
- ++ctx->head;
- ctx->head->field = field;
- ctx->head->parent_offset = parent_offset;
- break;
- } else {
- break;
- }
- }
- } while (ctx->enc_count);
- ctx->enc_type = 0;
- ctx->is_complex = 0;
- return 0;
-}
-
-static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts) {
- int got_Z = 0;
- while (1) {
- switch(*ts) {
- case 0:
- if (ctx->enc_type != 0 && ctx->head == NULL) {
- __Pyx_BufFmt_RaiseExpected(ctx);
- return NULL;
- }
- if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
- if (ctx->head != NULL) {
- __Pyx_BufFmt_RaiseExpected(ctx);
- return NULL;
- }
- return ts;
- case ' ':
- case 10:
- case 13:
- ++ts;
- break;
- case '<':
- if (!__Pyx_IsLittleEndian()) {
- PyErr_SetString(PyExc_ValueError, "Little-endian buffer not supported on big-endian compiler");
- return NULL;
- }
- ctx->new_packmode = '=';
- ++ts;
- break;
- case '>':
- case '!':
- if (__Pyx_IsLittleEndian()) {
- PyErr_SetString(PyExc_ValueError, "Big-endian buffer not supported on little-endian compiler");
- return NULL;
- }
- ctx->new_packmode = '=';
- ++ts;
- break;
- case '=':
- case '@':
- case '^':
- ctx->new_packmode = *ts++;
- break;
- case 'T': /* substruct */
- {
- const char* ts_after_sub;
- size_t i, struct_count = ctx->new_count;
- ctx->new_count = 1;
- ++ts;
- if (*ts != '{') {
- PyErr_SetString(PyExc_ValueError, "Buffer acquisition: Expected '{' after 'T'");
- return NULL;
- }
- ++ts;
- ts_after_sub = ts;
- for (i = 0; i != struct_count; ++i) {
- ts_after_sub = __Pyx_BufFmt_CheckString(ctx, ts);
- if (!ts_after_sub) return NULL;
- }
- ts = ts_after_sub;
- }
- break;
- case '}': /* end of substruct; either repeat or move on */
- ++ts;
- return ts;
- case 'x':
- if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
- ctx->fmt_offset += ctx->new_count;
- ctx->new_count = 1;
- ctx->enc_count = 0;
- ctx->enc_type = 0;
- ctx->enc_packmode = ctx->new_packmode;
- ++ts;
- break;
- case 'Z':
- got_Z = 1;
- ++ts;
- if (*ts != 'f' && *ts != 'd' && *ts != 'g') {
- __Pyx_BufFmt_RaiseUnexpectedChar('Z');
- return NULL;
- } /* fall through */
- case 'c': case 'b': case 'B': case 'h': case 'H': case 'i': case 'I':
- case 'l': case 'L': case 'q': case 'Q':
- case 'f': case 'd': case 'g':
- case 'O':
- if (ctx->enc_type == *ts && got_Z == ctx->is_complex &&
- ctx->enc_packmode == ctx->new_packmode) {
- /* Continue pooling same type */
- ctx->enc_count += ctx->new_count;
- } else {
- /* New type */
- if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
- ctx->enc_count = ctx->new_count;
- ctx->enc_packmode = ctx->new_packmode;
- ctx->enc_type = *ts;
- ctx->is_complex = got_Z;
- }
- ++ts;
- ctx->new_count = 1;
- got_Z = 0;
- break;
- case ':':
- ++ts;
- while(*ts != ':') ++ts;
- ++ts;
- break;
- default:
- {
- int number = __Pyx_BufFmt_ParseNumber(&ts);
- if (number == -1) { /* First char was not a digit */
- PyErr_Format(PyExc_ValueError,
- "Does not understand character buffer dtype format string ('%c')", *ts);
- return NULL;
- }
- ctx->new_count = (size_t)number;
- }
- }
- }
-}
-
-static CYTHON_INLINE void __Pyx_ZeroBuffer(Py_buffer* buf) {
- buf->buf = NULL;
- buf->obj = NULL;
- buf->strides = __Pyx_zeros;
- buf->shape = __Pyx_zeros;
- buf->suboffsets = __Pyx_minusones;
-}
-
-static CYTHON_INLINE int __Pyx_GetBufferAndValidate(Py_buffer* buf, PyObject* obj, __Pyx_TypeInfo* dtype, int flags, int nd, int cast, __Pyx_BufFmt_StackElem* stack) {
- if (obj == Py_None || obj == NULL) {
- __Pyx_ZeroBuffer(buf);
- return 0;
- }
- buf->buf = NULL;
- if (__Pyx_GetBuffer(obj, buf, flags) == -1) goto fail;
- if (buf->ndim != nd) {
- PyErr_Format(PyExc_ValueError,
- "Buffer has wrong number of dimensions (expected %d, got %d)",
- nd, buf->ndim);
- goto fail;
- }
- if (!cast) {
- __Pyx_BufFmt_Context ctx;
- __Pyx_BufFmt_Init(&ctx, stack, dtype);
- if (!__Pyx_BufFmt_CheckString(&ctx, buf->format)) goto fail;
- }
- if ((unsigned)buf->itemsize != dtype->size) {
- PyErr_Format(PyExc_ValueError,
- "Item size of buffer (%"PY_FORMAT_SIZE_T"d byte%s) does not match size of '%s' (%"PY_FORMAT_SIZE_T"d byte%s)",
- buf->itemsize, (buf->itemsize > 1) ? "s" : "",
- dtype->name, (Py_ssize_t)dtype->size, (dtype->size > 1) ? "s" : "");
- goto fail;
- }
- if (buf->suboffsets == NULL) buf->suboffsets = __Pyx_minusones;
- return 0;
-fail:;
- __Pyx_ZeroBuffer(buf);
- return -1;
-}
-
-static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) {
- if (info->buf == NULL) return;
- if (info->suboffsets == __Pyx_minusones) info->suboffsets = NULL;
- __Pyx_ReleaseBuffer(info);
-}
-static void __Pyx_RaiseBufferIndexError(int axis) {
- PyErr_Format(PyExc_IndexError,
- "Out of bounds on buffer access (axis %d)", axis);
-}
-
-
-static void __Pyx_RaiseBufferFallbackError(void) {
- PyErr_Format(PyExc_ValueError,
- "Buffer acquisition failed on assignment; and then reacquiring the old buffer failed too!");
-}
-
-
-static CYTHON_INLINE Py_ssize_t __Pyx_mod_Py_ssize_t(Py_ssize_t a, Py_ssize_t b) {
- Py_ssize_t r = a % b;
- r += ((r != 0) & ((r ^ b) < 0)) * b;
- return r;
-}
-
-static CYTHON_INLINE Py_ssize_t __Pyx_div_Py_ssize_t(Py_ssize_t a, Py_ssize_t b) {
- Py_ssize_t q = a / b;
- Py_ssize_t r = a - q*b;
- q -= ((r != 0) & ((r ^ b) < 0));
- return q;
-}
-
-static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) {
- PyObject *local_type, *local_value, *local_tb;
- PyObject *tmp_type, *tmp_value, *tmp_tb;
- PyThreadState *tstate = PyThreadState_GET();
- local_type = tstate->curexc_type;
- local_value = tstate->curexc_value;
- local_tb = tstate->curexc_traceback;
- tstate->curexc_type = 0;
- tstate->curexc_value = 0;
- tstate->curexc_traceback = 0;
- PyErr_NormalizeException(&local_type, &local_value, &local_tb);
- if (unlikely(tstate->curexc_type))
- goto bad;
- #if PY_MAJOR_VERSION >= 3
- if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0))
- goto bad;
- #endif
- *type = local_type;
- *value = local_value;
- *tb = local_tb;
- Py_INCREF(local_type);
- Py_INCREF(local_value);
- Py_INCREF(local_tb);
- tmp_type = tstate->exc_type;
- tmp_value = tstate->exc_value;
- tmp_tb = tstate->exc_traceback;
- tstate->exc_type = local_type;
- tstate->exc_value = local_value;
- tstate->exc_traceback = local_tb;
- /* Make sure tstate is in a consistent state when we XDECREF
- these objects (XDECREF may run arbitrary code). */
- Py_XDECREF(tmp_type);
- Py_XDECREF(tmp_value);
- Py_XDECREF(tmp_tb);
- return 0;
-bad:
- *type = 0;
- *value = 0;
- *tb = 0;
- Py_XDECREF(local_type);
- Py_XDECREF(local_value);
- Py_XDECREF(local_tb);
- return -1;
-}
-
-
-static double __Pyx__PyObject_AsDouble(PyObject* obj) {
- PyObject* float_value;
- if (Py_TYPE(obj)->tp_as_number && Py_TYPE(obj)->tp_as_number->nb_float) {
- return PyFloat_AsDouble(obj);
- } else if (PyUnicode_CheckExact(obj) || PyBytes_CheckExact(obj)) {
-#if PY_MAJOR_VERSION >= 3
- float_value = PyFloat_FromString(obj);
-#else
- float_value = PyFloat_FromString(obj, 0);
-#endif
- } else {
- PyObject* args = PyTuple_New(1);
- if (unlikely(!args)) goto bad;
- PyTuple_SET_ITEM(args, 0, obj);
- float_value = PyObject_Call((PyObject*)&PyFloat_Type, args, 0);
- PyTuple_SET_ITEM(args, 0, 0);
- Py_DECREF(args);
- }
- if (likely(float_value)) {
- double value = PyFloat_AS_DOUBLE(float_value);
- Py_DECREF(float_value);
- return value;
- }
-bad:
- return (double)-1;
-}
-
-static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) {
- PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable");
-}
-
-static void __Pyx_UnpackTupleError(PyObject *t, Py_ssize_t index) {
- if (t == Py_None) {
- __Pyx_RaiseNoneNotIterableError();
- } else if (PyTuple_GET_SIZE(t) < index) {
- __Pyx_RaiseNeedMoreValuesError(PyTuple_GET_SIZE(t));
- } else {
- __Pyx_RaiseTooManyValuesError(index);
- }
-}
-
-static CYTHON_INLINE void __Pyx_ExceptionSave(PyObject **type, PyObject **value, PyObject **tb) {
- PyThreadState *tstate = PyThreadState_GET();
- *type = tstate->exc_type;
- *value = tstate->exc_value;
- *tb = tstate->exc_traceback;
- Py_XINCREF(*type);
- Py_XINCREF(*value);
- Py_XINCREF(*tb);
-}
-
-static void __Pyx_ExceptionReset(PyObject *type, PyObject *value, PyObject *tb) {
- PyObject *tmp_type, *tmp_value, *tmp_tb;
- PyThreadState *tstate = PyThreadState_GET();
- tmp_type = tstate->exc_type;
- tmp_value = tstate->exc_value;
- tmp_tb = tstate->exc_traceback;
- tstate->exc_type = type;
- tstate->exc_value = value;
- tstate->exc_traceback = tb;
- Py_XDECREF(tmp_type);
- Py_XDECREF(tmp_value);
- Py_XDECREF(tmp_tb);
-}
-
-#if PY_MAJOR_VERSION < 3
-static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags) {
- #if PY_VERSION_HEX >= 0x02060000
- if (PyObject_CheckBuffer(obj)) return PyObject_GetBuffer(obj, view, flags);
- #endif
- if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) return __pyx_pf_5numpy_7ndarray___getbuffer__(obj, view, flags);
- else {
- PyErr_Format(PyExc_TypeError, "'%100s' does not have the buffer interface", Py_TYPE(obj)->tp_name);
- return -1;
- }
-}
-
-static void __Pyx_ReleaseBuffer(Py_buffer *view) {
- PyObject* obj = view->obj;
- if (obj) {
- #if PY_VERSION_HEX >= 0x02060000
- if (PyObject_CheckBuffer(obj)) {PyBuffer_Release(view); return;}
- #endif
- if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) __pyx_pf_5numpy_7ndarray_1__releasebuffer__(obj, view);
- Py_DECREF(obj);
- view->obj = NULL;
- }
-}
-
-#endif
-
-static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, long level) {
- PyObject *py_import = 0;
- PyObject *empty_list = 0;
- PyObject *module = 0;
- PyObject *global_dict = 0;
- PyObject *empty_dict = 0;
- PyObject *list;
- py_import = __Pyx_GetAttrString(__pyx_b, "__import__");
- if (!py_import)
- goto bad;
- if (from_list)
- list = from_list;
- else {
- empty_list = PyList_New(0);
- if (!empty_list)
- goto bad;
- list = empty_list;
- }
- global_dict = PyModule_GetDict(__pyx_m);
- if (!global_dict)
- goto bad;
- empty_dict = PyDict_New();
- if (!empty_dict)
- goto bad;
- #if PY_VERSION_HEX >= 0x02050000
- {
- PyObject *py_level = PyInt_FromLong(level);
- if (!py_level)
- goto bad;
- module = PyObject_CallFunctionObjArgs(py_import,
- name, global_dict, empty_dict, list, py_level, NULL);
- Py_DECREF(py_level);
- }
- #else
- if (level>0) {
- PyErr_SetString(PyExc_RuntimeError, "Relative import is not supported for Python <=2.4.");
- goto bad;
- }
- module = PyObject_CallFunctionObjArgs(py_import,
- name, global_dict, empty_dict, list, NULL);
- #endif
-bad:
- Py_XDECREF(empty_list);
- Py_XDECREF(py_import);
- Py_XDECREF(empty_dict);
- return module;
-}
-
-static PyObject* __Pyx_Intern(PyObject* s) {
- if (!(likely(PyString_CheckExact(s)))) {
- PyErr_Format(PyExc_TypeError, "Expected str, got %s", Py_TYPE(s)->tp_name);
- return 0;
- }
- Py_INCREF(s);
- #if PY_MAJOR_VERSION >= 3
- PyUnicode_InternInPlace(&s);
- #else
- PyString_InternInPlace(&s);
- #endif
- return s;
-}
-
-static PyObject* __Pyx_Method_ClassMethod(PyObject *method) {
- /* It appears that PyMethodDescr_Type is not anywhere exposed in the Python/C API */
- static PyTypeObject *methoddescr_type = NULL;
- if (methoddescr_type == NULL) {
- PyObject *meth = __Pyx_GetAttrString((PyObject*)&PyList_Type, "append");
- if (!meth) return NULL;
- methoddescr_type = Py_TYPE(meth);
- Py_DECREF(meth);
- }
- if (PyObject_TypeCheck(method, methoddescr_type)) { /* cdef classes */
- PyMethodDescrObject *descr = (PyMethodDescrObject *)method;
- #if PY_VERSION_HEX < 0x03020000
- PyTypeObject *d_type = descr->d_type;
- #else
- PyTypeObject *d_type = descr->d_common.d_type;
- #endif
- return PyDescr_NewClassMethod(d_type, descr->d_method);
- }
- else if (PyMethod_Check(method)) { /* python classes */
- return PyClassMethod_New(PyMethod_GET_FUNCTION(method));
- }
- else if (PyCFunction_Check(method)) {
- return PyClassMethod_New(method);
- }
-#ifdef __pyx_binding_PyCFunctionType_USED
- else if (PyObject_TypeCheck(method, __pyx_binding_PyCFunctionType)) { /* binded CFunction */
- return PyClassMethod_New(method);
- }
-#endif
- PyErr_Format(PyExc_TypeError,
- "Class-level classmethod() can only be called on "
- "a method_descriptor or instance method.");
- return NULL;
-}
-
-static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals) {
- if (s1 == s2) { /* as done by PyObject_RichCompareBool(); also catches the (interned) empty string */
- return (equals == Py_EQ);
- } else if (PyBytes_CheckExact(s1) & PyBytes_CheckExact(s2)) {
- if (PyBytes_GET_SIZE(s1) != PyBytes_GET_SIZE(s2)) {
- return (equals == Py_NE);
- } else if (PyBytes_GET_SIZE(s1) == 1) {
- if (equals == Py_EQ)
- return (PyBytes_AS_STRING(s1)[0] == PyBytes_AS_STRING(s2)[0]);
- else
- return (PyBytes_AS_STRING(s1)[0] != PyBytes_AS_STRING(s2)[0]);
- } else {
- int result = memcmp(PyBytes_AS_STRING(s1), PyBytes_AS_STRING(s2), (size_t)PyBytes_GET_SIZE(s1));
- return (equals == Py_EQ) ? (result == 0) : (result != 0);
- }
- } else if ((s1 == Py_None) & PyBytes_CheckExact(s2)) {
- return (equals == Py_NE);
- } else if ((s2 == Py_None) & PyBytes_CheckExact(s1)) {
- return (equals == Py_NE);
- } else {
- int result;
- PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
- if (!py_result)
- return -1;
- result = __Pyx_PyObject_IsTrue(py_result);
- Py_DECREF(py_result);
- return result;
- }
-}
-
-static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals) {
- if (s1 == s2) { /* as done by PyObject_RichCompareBool(); also catches the (interned) empty string */
- return (equals == Py_EQ);
- } else if (PyUnicode_CheckExact(s1) & PyUnicode_CheckExact(s2)) {
- if (PyUnicode_GET_SIZE(s1) != PyUnicode_GET_SIZE(s2)) {
- return (equals == Py_NE);
- } else if (PyUnicode_GET_SIZE(s1) == 1) {
- if (equals == Py_EQ)
- return (PyUnicode_AS_UNICODE(s1)[0] == PyUnicode_AS_UNICODE(s2)[0]);
- else
- return (PyUnicode_AS_UNICODE(s1)[0] != PyUnicode_AS_UNICODE(s2)[0]);
- } else {
- int result = PyUnicode_Compare(s1, s2);
- if ((result == -1) && unlikely(PyErr_Occurred()))
- return -1;
- return (equals == Py_EQ) ? (result == 0) : (result != 0);
- }
- } else if ((s1 == Py_None) & PyUnicode_CheckExact(s2)) {
- return (equals == Py_NE);
- } else if ((s2 == Py_None) & PyUnicode_CheckExact(s1)) {
- return (equals == Py_NE);
- } else {
- int result;
- PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
- if (!py_result)
- return -1;
- result = __Pyx_PyObject_IsTrue(py_result);
- Py_DECREF(py_result);
- return result;
- }
-}
-
-
-static PyObject *__pyx_binding_PyCFunctionType_NewEx(PyMethodDef *ml, PyObject *self, PyObject *module) {
- __pyx_binding_PyCFunctionType_object *op = PyObject_GC_New(__pyx_binding_PyCFunctionType_object, __pyx_binding_PyCFunctionType);
- if (op == NULL)
- return NULL;
- op->func.m_ml = ml;
- Py_XINCREF(self);
- op->func.m_self = self;
- Py_XINCREF(module);
- op->func.m_module = module;
- PyObject_GC_Track(op);
- return (PyObject *)op;
-}
-
-static void __pyx_binding_PyCFunctionType_dealloc(__pyx_binding_PyCFunctionType_object *m) {
- PyObject_GC_UnTrack(m);
- Py_XDECREF(m->func.m_self);
- Py_XDECREF(m->func.m_module);
- PyObject_GC_Del(m);
-}
-
-static PyObject *__pyx_binding_PyCFunctionType_descr_get(PyObject *func, PyObject *obj, PyObject *type) {
- if (obj == Py_None)
- obj = NULL;
- return PyMethod_New(func, obj, type);
-}
-
-static int __pyx_binding_PyCFunctionType_init(void) {
- __pyx_binding_PyCFunctionType_type = PyCFunction_Type;
- __pyx_binding_PyCFunctionType_type.tp_name = __Pyx_NAMESTR("cython_binding_builtin_function_or_method");
- __pyx_binding_PyCFunctionType_type.tp_dealloc = (destructor)__pyx_binding_PyCFunctionType_dealloc;
- __pyx_binding_PyCFunctionType_type.tp_descr_get = __pyx_binding_PyCFunctionType_descr_get;
- if (PyType_Ready(&__pyx_binding_PyCFunctionType_type) < 0) {
- return -1;
- }
- __pyx_binding_PyCFunctionType = &__pyx_binding_PyCFunctionType_type;
- return 0;
-
-}
-
-static CYTHON_INLINE Py_intptr_t __Pyx_PyInt_from_py_Py_intptr_t(PyObject* x) {
- const Py_intptr_t neg_one = (Py_intptr_t)-1, const_zero = (Py_intptr_t)0;
- const int is_unsigned = const_zero < neg_one;
- if (sizeof(Py_intptr_t) == sizeof(char)) {
- if (is_unsigned)
- return (Py_intptr_t)__Pyx_PyInt_AsUnsignedChar(x);
- else
- return (Py_intptr_t)__Pyx_PyInt_AsSignedChar(x);
- } else if (sizeof(Py_intptr_t) == sizeof(short)) {
- if (is_unsigned)
- return (Py_intptr_t)__Pyx_PyInt_AsUnsignedShort(x);
- else
- return (Py_intptr_t)__Pyx_PyInt_AsSignedShort(x);
- } else if (sizeof(Py_intptr_t) == sizeof(int)) {
- if (is_unsigned)
- return (Py_intptr_t)__Pyx_PyInt_AsUnsignedInt(x);
- else
- return (Py_intptr_t)__Pyx_PyInt_AsSignedInt(x);
- } else if (sizeof(Py_intptr_t) == sizeof(long)) {
- if (is_unsigned)
- return (Py_intptr_t)__Pyx_PyInt_AsUnsignedLong(x);
- else
- return (Py_intptr_t)__Pyx_PyInt_AsSignedLong(x);
- } else if (sizeof(Py_intptr_t) == sizeof(PY_LONG_LONG)) {
- if (is_unsigned)
- return (Py_intptr_t)__Pyx_PyInt_AsUnsignedLongLong(x);
- else
- return (Py_intptr_t)__Pyx_PyInt_AsSignedLongLong(x);
- } else {
- Py_intptr_t val;
- PyObject *v = __Pyx_PyNumber_Int(x);
- #if PY_VERSION_HEX < 0x03000000
- if (likely(v) && !PyLong_Check(v)) {
- PyObject *tmp = v;
- v = PyNumber_Long(tmp);
- Py_DECREF(tmp);
- }
- #endif
- if (likely(v)) {
- int one = 1; int is_little = (int)*(unsigned char *)&one;
- unsigned char *bytes = (unsigned char *)&val;
- int ret = _PyLong_AsByteArray((PyLongObject *)v,
- bytes, sizeof(val),
- is_little, !is_unsigned);
- Py_DECREF(v);
- if (likely(!ret))
- return val;
- }
- return (Py_intptr_t)-1;
- }
-}
-
-static CYTHON_INLINE long __Pyx_pow_long(long b, long e) {
- long t = b;
- switch (e) {
- case 3:
- t *= b;
- case 2:
- t *= b;
- case 1:
- return t;
- case 0:
- return 1;
- }
- if (unlikely(e<0)) return 0;
- t = 1;
- while (likely(e)) {
- t *= (b * (e&1)) | ((~e)&1); /* 1 or b */
- b *= b;
- e >>= 1;
- }
- return t;
-}
-
-static CYTHON_INLINE npy_long __Pyx_PyInt_from_py_npy_long(PyObject* x) {
- const npy_long neg_one = (npy_long)-1, const_zero = (npy_long)0;
- const int is_unsigned = const_zero < neg_one;
- if (sizeof(npy_long) == sizeof(char)) {
- if (is_unsigned)
- return (npy_long)__Pyx_PyInt_AsUnsignedChar(x);
- else
- return (npy_long)__Pyx_PyInt_AsSignedChar(x);
- } else if (sizeof(npy_long) == sizeof(short)) {
- if (is_unsigned)
- return (npy_long)__Pyx_PyInt_AsUnsignedShort(x);
- else
- return (npy_long)__Pyx_PyInt_AsSignedShort(x);
- } else if (sizeof(npy_long) == sizeof(int)) {
- if (is_unsigned)
- return (npy_long)__Pyx_PyInt_AsUnsignedInt(x);
- else
- return (npy_long)__Pyx_PyInt_AsSignedInt(x);
- } else if (sizeof(npy_long) == sizeof(long)) {
- if (is_unsigned)
- return (npy_long)__Pyx_PyInt_AsUnsignedLong(x);
- else
- return (npy_long)__Pyx_PyInt_AsSignedLong(x);
- } else if (sizeof(npy_long) == sizeof(PY_LONG_LONG)) {
- if (is_unsigned)
- return (npy_long)__Pyx_PyInt_AsUnsignedLongLong(x);
- else
- return (npy_long)__Pyx_PyInt_AsSignedLongLong(x);
- } else {
- npy_long val;
- PyObject *v = __Pyx_PyNumber_Int(x);
- #if PY_VERSION_HEX < 0x03000000
- if (likely(v) && !PyLong_Check(v)) {
- PyObject *tmp = v;
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- Py_DECREF(tmp);
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- #endif
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- int one = 1; int is_little = (int)*(unsigned char *)&one;
- unsigned char *bytes = (unsigned char *)&val;
- int ret = _PyLong_AsByteArray((PyLongObject *)v,
- bytes, sizeof(val),
- is_little, !is_unsigned);
- Py_DECREF(v);
- if (likely(!ret))
- return val;
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- return (npy_long)-1;
- }
-}
-
-static CYTHON_INLINE PyObject *__Pyx_PyInt_to_py_Py_intptr_t(Py_intptr_t val) {
- const Py_intptr_t neg_one = (Py_intptr_t)-1, const_zero = (Py_intptr_t)0;
- const int is_unsigned = const_zero < neg_one;
- if ((sizeof(Py_intptr_t) == sizeof(char)) ||
- (sizeof(Py_intptr_t) == sizeof(short))) {
- return PyInt_FromLong((long)val);
- } else if ((sizeof(Py_intptr_t) == sizeof(int)) ||
- (sizeof(Py_intptr_t) == sizeof(long))) {
- if (is_unsigned)
- return PyLong_FromUnsignedLong((unsigned long)val);
- else
- return PyInt_FromLong((long)val);
- } else if (sizeof(Py_intptr_t) == sizeof(PY_LONG_LONG)) {
- if (is_unsigned)
- return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG)val);
- else
- return PyLong_FromLongLong((PY_LONG_LONG)val);
- } else {
- int one = 1; int little = (int)*(unsigned char *)&one;
- unsigned char *bytes = (unsigned char *)&val;
- return _PyLong_FromByteArray(bytes, sizeof(Py_intptr_t),
- little, !is_unsigned);
- }
-}
-
-#if CYTHON_CCOMPLEX
- #ifdef __cplusplus
- static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
- return ::std::complex< float >(x, y);
- }
- #else
- static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
- return x + y*(__pyx_t_float_complex)_Complex_I;
- }
- #endif
-#else
- static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
- __pyx_t_float_complex z;
- z.real = x;
- z.imag = y;
- return z;
- }
-#endif
-
-#if CYTHON_CCOMPLEX
-#else
- static CYTHON_INLINE int __Pyx_c_eqf(__pyx_t_float_complex a, __pyx_t_float_complex b) {
- return (a.real == b.real) && (a.imag == b.imag);
- }
- static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sumf(__pyx_t_float_complex a, __pyx_t_float_complex b) {
- __pyx_t_float_complex z;
- z.real = a.real + b.real;
- z.imag = a.imag + b.imag;
- return z;
- }
- static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_difff(__pyx_t_float_complex a, __pyx_t_float_complex b) {
- __pyx_t_float_complex z;
- z.real = a.real - b.real;
- z.imag = a.imag - b.imag;
- return z;
- }
- static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prodf(__pyx_t_float_complex a, __pyx_t_float_complex b) {
- __pyx_t_float_complex z;
- z.real = a.real * b.real - a.imag * b.imag;
- z.imag = a.real * b.imag + a.imag * b.real;
- return z;
- }
- static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quotf(__pyx_t_float_complex a, __pyx_t_float_complex b) {
- __pyx_t_float_complex z;
- float denom = b.real * b.real + b.imag * b.imag;
- z.real = (a.real * b.real + a.imag * b.imag) / denom;
- z.imag = (a.imag * b.real - a.real * b.imag) / denom;
- return z;
- }
- static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_negf(__pyx_t_float_complex a) {
- __pyx_t_float_complex z;
- z.real = -a.real;
- z.imag = -a.imag;
- return z;
- }
- static CYTHON_INLINE int __Pyx_c_is_zerof(__pyx_t_float_complex a) {
- return (a.real == 0) && (a.imag == 0);
- }
- static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conjf(__pyx_t_float_complex a) {
- __pyx_t_float_complex z;
- z.real = a.real;
- z.imag = -a.imag;
- return z;
- }
- #if 1
- static CYTHON_INLINE float __Pyx_c_absf(__pyx_t_float_complex z) {
- #if !defined(HAVE_HYPOT) || defined(_MSC_VER)
- return sqrtf(z.real*z.real + z.imag*z.imag);
- #else
- return hypotf(z.real, z.imag);
- #endif
- }
- static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_powf(__pyx_t_float_complex a, __pyx_t_float_complex b) {
- __pyx_t_float_complex z;
- float r, lnr, theta, z_r, z_theta;
- if (b.imag == 0 && b.real == (int)b.real) {
- if (b.real < 0) {
- float denom = a.real * a.real + a.imag * a.imag;
- a.real = a.real / denom;
- a.imag = -a.imag / denom;
- b.real = -b.real;
- }
- switch ((int)b.real) {
- case 0:
- z.real = 1;
- z.imag = 0;
- return z;
- case 1:
- return a;
- case 2:
- z = __Pyx_c_prodf(a, a);
- return __Pyx_c_prodf(a, a);
- case 3:
- z = __Pyx_c_prodf(a, a);
- return __Pyx_c_prodf(z, a);
- case 4:
- z = __Pyx_c_prodf(a, a);
- return __Pyx_c_prodf(z, z);
- }
- }
- if (a.imag == 0) {
- if (a.real == 0) {
- return a;
- }
- r = a.real;
- theta = 0;
- } else {
- r = __Pyx_c_absf(a);
- theta = atan2f(a.imag, a.real);
- }
- lnr = logf(r);
- z_r = expf(lnr * b.real - theta * b.imag);
- z_theta = theta * b.real + lnr * b.imag;
- z.real = z_r * cosf(z_theta);
- z.imag = z_r * sinf(z_theta);
- return z;
- }
- #endif
-#endif
-
-#if CYTHON_CCOMPLEX
- #ifdef __cplusplus
- static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
- return ::std::complex< double >(x, y);
- }
- #else
- static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
- return x + y*(__pyx_t_double_complex)_Complex_I;
- }
- #endif
-#else
- static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
- __pyx_t_double_complex z;
- z.real = x;
- z.imag = y;
- return z;
- }
-#endif
-
-#if CYTHON_CCOMPLEX
-#else
- static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex a, __pyx_t_double_complex b) {
- return (a.real == b.real) && (a.imag == b.imag);
- }
- static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum(__pyx_t_double_complex a, __pyx_t_double_complex b) {
- __pyx_t_double_complex z;
- z.real = a.real + b.real;
- z.imag = a.imag + b.imag;
- return z;
- }
- static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff(__pyx_t_double_complex a, __pyx_t_double_complex b) {
- __pyx_t_double_complex z;
- z.real = a.real - b.real;
- z.imag = a.imag - b.imag;
- return z;
- }
- static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod(__pyx_t_double_complex a, __pyx_t_double_complex b) {
- __pyx_t_double_complex z;
- z.real = a.real * b.real - a.imag * b.imag;
- z.imag = a.real * b.imag + a.imag * b.real;
- return z;
- }
- static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot(__pyx_t_double_complex a, __pyx_t_double_complex b) {
- __pyx_t_double_complex z;
- double denom = b.real * b.real + b.imag * b.imag;
- z.real = (a.real * b.real + a.imag * b.imag) / denom;
- z.imag = (a.imag * b.real - a.real * b.imag) / denom;
- return z;
- }
- static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg(__pyx_t_double_complex a) {
- __pyx_t_double_complex z;
- z.real = -a.real;
- z.imag = -a.imag;
- return z;
- }
- static CYTHON_INLINE int __Pyx_c_is_zero(__pyx_t_double_complex a) {
- return (a.real == 0) && (a.imag == 0);
- }
- static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj(__pyx_t_double_complex a) {
- __pyx_t_double_complex z;
- z.real = a.real;
- z.imag = -a.imag;
- return z;
- }
- #if 1
- static CYTHON_INLINE double __Pyx_c_abs(__pyx_t_double_complex z) {
- #if !defined(HAVE_HYPOT) || defined(_MSC_VER)
- return sqrt(z.real*z.real + z.imag*z.imag);
- #else
- return hypot(z.real, z.imag);
- #endif
- }
- static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow(__pyx_t_double_complex a, __pyx_t_double_complex b) {
- __pyx_t_double_complex z;
- double r, lnr, theta, z_r, z_theta;
- if (b.imag == 0 && b.real == (int)b.real) {
- if (b.real < 0) {
- double denom = a.real * a.real + a.imag * a.imag;
- a.real = a.real / denom;
- a.imag = -a.imag / denom;
- b.real = -b.real;
- }
- switch ((int)b.real) {
- case 0:
- z.real = 1;
- z.imag = 0;
- return z;
- case 1:
- return a;
- case 2:
- z = __Pyx_c_prod(a, a);
- return __Pyx_c_prod(a, a);
- case 3:
- z = __Pyx_c_prod(a, a);
- return __Pyx_c_prod(z, a);
- case 4:
- z = __Pyx_c_prod(a, a);
- return __Pyx_c_prod(z, z);
- }
- }
- if (a.imag == 0) {
- if (a.real == 0) {
- return a;
- }
- r = a.real;
- theta = 0;
- } else {
- r = __Pyx_c_abs(a);
- theta = atan2(a.imag, a.real);
- }
- lnr = log(r);
- z_r = exp(lnr * b.real - theta * b.imag);
- z_theta = theta * b.real + lnr * b.imag;
- z.real = z_r * cos(z_theta);
- z.imag = z_r * sin(z_theta);
- return z;
- }
- #endif
-#endif
-
-static CYTHON_INLINE unsigned char __Pyx_PyInt_AsUnsignedChar(PyObject* x) {
- const unsigned char neg_one = (unsigned char)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
- if (sizeof(unsigned char) < sizeof(long)) {
- long val = __Pyx_PyInt_AsLong(x);
- if (unlikely(val != (long)(unsigned char)val)) {
- if (!unlikely(val == -1 && PyErr_Occurred())) {
- PyErr_SetString(PyExc_OverflowError,
- (is_unsigned && unlikely(val < 0)) ?
- "can't convert negative value to unsigned char" :
- "value too large to convert to unsigned char");
- }
- return (unsigned char)-1;
- }
- return (unsigned char)val;
- }
- return (unsigned char)__Pyx_PyInt_AsUnsignedLong(x);
-}
-
-static CYTHON_INLINE unsigned short __Pyx_PyInt_AsUnsignedShort(PyObject* x) {
- const unsigned short neg_one = (unsigned short)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
- if (sizeof(unsigned short) < sizeof(long)) {
- long val = __Pyx_PyInt_AsLong(x);
- if (unlikely(val != (long)(unsigned short)val)) {
- if (!unlikely(val == -1 && PyErr_Occurred())) {
- PyErr_SetString(PyExc_OverflowError,
- (is_unsigned && unlikely(val < 0)) ?
- "can't convert negative value to unsigned short" :
- "value too large to convert to unsigned short");
- }
- return (unsigned short)-1;
- }
- return (unsigned short)val;
- }
- return (unsigned short)__Pyx_PyInt_AsUnsignedLong(x);
-}
-
-static CYTHON_INLINE unsigned int __Pyx_PyInt_AsUnsignedInt(PyObject* x) {
- const unsigned int neg_one = (unsigned int)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
- if (sizeof(unsigned int) < sizeof(long)) {
- long val = __Pyx_PyInt_AsLong(x);
- if (unlikely(val != (long)(unsigned int)val)) {
- if (!unlikely(val == -1 && PyErr_Occurred())) {
- PyErr_SetString(PyExc_OverflowError,
- (is_unsigned && unlikely(val < 0)) ?
- "can't convert negative value to unsigned int" :
- "value too large to convert to unsigned int");
- }
- return (unsigned int)-1;
- }
- return (unsigned int)val;
- }
- return (unsigned int)__Pyx_PyInt_AsUnsignedLong(x);
-}
-
-static CYTHON_INLINE char __Pyx_PyInt_AsChar(PyObject* x) {
- const char neg_one = (char)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
- if (sizeof(char) < sizeof(long)) {
- long val = __Pyx_PyInt_AsLong(x);
- if (unlikely(val != (long)(char)val)) {
- if (!unlikely(val == -1 && PyErr_Occurred())) {
- PyErr_SetString(PyExc_OverflowError,
- (is_unsigned && unlikely(val < 0)) ?
- "can't convert negative value to char" :
- "value too large to convert to char");
- }
- return (char)-1;
- }
- return (char)val;
- }
- return (char)__Pyx_PyInt_AsLong(x);
-}
-
-static CYTHON_INLINE short __Pyx_PyInt_AsShort(PyObject* x) {
- const short neg_one = (short)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
- if (sizeof(short) < sizeof(long)) {
- long val = __Pyx_PyInt_AsLong(x);
- if (unlikely(val != (long)(short)val)) {
- if (!unlikely(val == -1 && PyErr_Occurred())) {
- PyErr_SetString(PyExc_OverflowError,
- (is_unsigned && unlikely(val < 0)) ?
- "can't convert negative value to short" :
- "value too large to convert to short");
- }
- return (short)-1;
- }
- return (short)val;
- }
- return (short)__Pyx_PyInt_AsLong(x);
-}
-
-static CYTHON_INLINE int __Pyx_PyInt_AsInt(PyObject* x) {
- const int neg_one = (int)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
- if (sizeof(int) < sizeof(long)) {
- long val = __Pyx_PyInt_AsLong(x);
- if (unlikely(val != (long)(int)val)) {
- if (!unlikely(val == -1 && PyErr_Occurred())) {
- PyErr_SetString(PyExc_OverflowError,
- (is_unsigned && unlikely(val < 0)) ?
- "can't convert negative value to int" :
- "value too large to convert to int");
- }
- return (int)-1;
- }
- return (int)val;
- }
- return (int)__Pyx_PyInt_AsLong(x);
-}
-
-static CYTHON_INLINE signed char __Pyx_PyInt_AsSignedChar(PyObject* x) {
- const signed char neg_one = (signed char)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
- if (sizeof(signed char) < sizeof(long)) {
- long val = __Pyx_PyInt_AsLong(x);
- if (unlikely(val != (long)(signed char)val)) {
- if (!unlikely(val == -1 && PyErr_Occurred())) {
- PyErr_SetString(PyExc_OverflowError,
- (is_unsigned && unlikely(val < 0)) ?
- "can't convert negative value to signed char" :
- "value too large to convert to signed char");
- }
- return (signed char)-1;
- }
- return (signed char)val;
- }
- return (signed char)__Pyx_PyInt_AsSignedLong(x);
-}
-
-static CYTHON_INLINE signed short __Pyx_PyInt_AsSignedShort(PyObject* x) {
- const signed short neg_one = (signed short)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
- if (sizeof(signed short) < sizeof(long)) {
- long val = __Pyx_PyInt_AsLong(x);
- if (unlikely(val != (long)(signed short)val)) {
- if (!unlikely(val == -1 && PyErr_Occurred())) {
- PyErr_SetString(PyExc_OverflowError,
- (is_unsigned && unlikely(val < 0)) ?
- "can't convert negative value to signed short" :
- "value too large to convert to signed short");
- }
- return (signed short)-1;
- }
- return (signed short)val;
- }
- return (signed short)__Pyx_PyInt_AsSignedLong(x);
-}
-
-static CYTHON_INLINE signed int __Pyx_PyInt_AsSignedInt(PyObject* x) {
- const signed int neg_one = (signed int)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
- if (sizeof(signed int) < sizeof(long)) {
- long val = __Pyx_PyInt_AsLong(x);
- if (unlikely(val != (long)(signed int)val)) {
- if (!unlikely(val == -1 && PyErr_Occurred())) {
- PyErr_SetString(PyExc_OverflowError,
- (is_unsigned && unlikely(val < 0)) ?
- "can't convert negative value to signed int" :
- "value too large to convert to signed int");
- }
- return (signed int)-1;
- }
- return (signed int)val;
- }
- return (signed int)__Pyx_PyInt_AsSignedLong(x);
-}
-
-static CYTHON_INLINE int __Pyx_PyInt_AsLongDouble(PyObject* x) {
- const int neg_one = (int)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
- if (sizeof(int) < sizeof(long)) {
- long val = __Pyx_PyInt_AsLong(x);
- if (unlikely(val != (long)(int)val)) {
- if (!unlikely(val == -1 && PyErr_Occurred())) {
- PyErr_SetString(PyExc_OverflowError,
- (is_unsigned && unlikely(val < 0)) ?
- "can't convert negative value to int" :
- "value too large to convert to int");
- }
- return (int)-1;
- }
- return (int)val;
- }
- return (int)__Pyx_PyInt_AsLong(x);
-}
-
-static CYTHON_INLINE unsigned long __Pyx_PyInt_AsUnsignedLong(PyObject* x) {
- const unsigned long neg_one = (unsigned long)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
-#if PY_VERSION_HEX < 0x03000000
- if (likely(PyInt_Check(x))) {
- long val = PyInt_AS_LONG(x);
- if (is_unsigned && unlikely(val < 0)) {
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to unsigned long");
- return (unsigned long)-1;
- }
- return (unsigned long)val;
- } else
-#endif
- if (likely(PyLong_Check(x))) {
- if (is_unsigned) {
- if (unlikely(Py_SIZE(x) < 0)) {
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to unsigned long");
- return (unsigned long)-1;
- }
- return (unsigned long)PyLong_AsUnsignedLong(x);
- } else {
- return (unsigned long)PyLong_AsLong(x);
- }
- } else {
- unsigned long val;
- PyObject *tmp = __Pyx_PyNumber_Int(x);
- if (!tmp) return (unsigned long)-1;
- val = __Pyx_PyInt_AsUnsignedLong(tmp);
- Py_DECREF(tmp);
- return val;
- }
-}
-
-static CYTHON_INLINE unsigned PY_LONG_LONG __Pyx_PyInt_AsUnsignedLongLong(PyObject* x) {
- const unsigned PY_LONG_LONG neg_one = (unsigned PY_LONG_LONG)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
-#if PY_VERSION_HEX < 0x03000000
- if (likely(PyInt_Check(x))) {
- long val = PyInt_AS_LONG(x);
- if (is_unsigned && unlikely(val < 0)) {
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to unsigned PY_LONG_LONG");
- return (unsigned PY_LONG_LONG)-1;
- }
- return (unsigned PY_LONG_LONG)val;
- } else
-#endif
- if (likely(PyLong_Check(x))) {
- if (is_unsigned) {
- if (unlikely(Py_SIZE(x) < 0)) {
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to unsigned PY_LONG_LONG");
- return (unsigned PY_LONG_LONG)-1;
- }
- return (unsigned PY_LONG_LONG)PyLong_AsUnsignedLongLong(x);
- } else {
- return (unsigned PY_LONG_LONG)PyLong_AsLongLong(x);
- }
- } else {
- unsigned PY_LONG_LONG val;
- PyObject *tmp = __Pyx_PyNumber_Int(x);
- if (!tmp) return (unsigned PY_LONG_LONG)-1;
- val = __Pyx_PyInt_AsUnsignedLongLong(tmp);
- Py_DECREF(tmp);
- return val;
- }
-}
-
-static CYTHON_INLINE long __Pyx_PyInt_AsLong(PyObject* x) {
- const long neg_one = (long)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
-#if PY_VERSION_HEX < 0x03000000
- if (likely(PyInt_Check(x))) {
- long val = PyInt_AS_LONG(x);
- if (is_unsigned && unlikely(val < 0)) {
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to long");
- return (long)-1;
- }
- return (long)val;
- } else
-#endif
- if (likely(PyLong_Check(x))) {
- if (is_unsigned) {
- if (unlikely(Py_SIZE(x) < 0)) {
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to long");
- return (long)-1;
- }
- return (long)PyLong_AsUnsignedLong(x);
- } else {
- return (long)PyLong_AsLong(x);
- }
- } else {
- long val;
- PyObject *tmp = __Pyx_PyNumber_Int(x);
- if (!tmp) return (long)-1;
- val = __Pyx_PyInt_AsLong(tmp);
- Py_DECREF(tmp);
- return val;
- }
-}
-
-static CYTHON_INLINE PY_LONG_LONG __Pyx_PyInt_AsLongLong(PyObject* x) {
- const PY_LONG_LONG neg_one = (PY_LONG_LONG)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
-#if PY_VERSION_HEX < 0x03000000
- if (likely(PyInt_Check(x))) {
- long val = PyInt_AS_LONG(x);
- if (is_unsigned && unlikely(val < 0)) {
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to PY_LONG_LONG");
- return (PY_LONG_LONG)-1;
- }
- return (PY_LONG_LONG)val;
- } else
-#endif
- if (likely(PyLong_Check(x))) {
- if (is_unsigned) {
- if (unlikely(Py_SIZE(x) < 0)) {
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to PY_LONG_LONG");
- return (PY_LONG_LONG)-1;
- }
- return (PY_LONG_LONG)PyLong_AsUnsignedLongLong(x);
- } else {
- return (PY_LONG_LONG)PyLong_AsLongLong(x);
- }
- } else {
- PY_LONG_LONG val;
- PyObject *tmp = __Pyx_PyNumber_Int(x);
- if (!tmp) return (PY_LONG_LONG)-1;
- val = __Pyx_PyInt_AsLongLong(tmp);
- Py_DECREF(tmp);
- return val;
- }
-}
-
-static CYTHON_INLINE signed long __Pyx_PyInt_AsSignedLong(PyObject* x) {
- const signed long neg_one = (signed long)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
-#if PY_VERSION_HEX < 0x03000000
- if (likely(PyInt_Check(x))) {
- long val = PyInt_AS_LONG(x);
- if (is_unsigned && unlikely(val < 0)) {
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to signed long");
- return (signed long)-1;
- }
- return (signed long)val;
- } else
-#endif
- if (likely(PyLong_Check(x))) {
- if (is_unsigned) {
- if (unlikely(Py_SIZE(x) < 0)) {
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to signed long");
- return (signed long)-1;
- }
- return (signed long)PyLong_AsUnsignedLong(x);
- } else {
- return (signed long)PyLong_AsLong(x);
- }
- } else {
- signed long val;
- PyObject *tmp = __Pyx_PyNumber_Int(x);
- if (!tmp) return (signed long)-1;
- val = __Pyx_PyInt_AsSignedLong(tmp);
- Py_DECREF(tmp);
- return val;
- }
-}
-
-static CYTHON_INLINE signed PY_LONG_LONG __Pyx_PyInt_AsSignedLongLong(PyObject* x) {
- const signed PY_LONG_LONG neg_one = (signed PY_LONG_LONG)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
-#if PY_VERSION_HEX < 0x03000000
- if (likely(PyInt_Check(x))) {
- long val = PyInt_AS_LONG(x);
- if (is_unsigned && unlikely(val < 0)) {
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to signed PY_LONG_LONG");
- return (signed PY_LONG_LONG)-1;
- }
- return (signed PY_LONG_LONG)val;
- } else
-#endif
- if (likely(PyLong_Check(x))) {
- if (is_unsigned) {
- if (unlikely(Py_SIZE(x) < 0)) {
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to signed PY_LONG_LONG");
- return (signed PY_LONG_LONG)-1;
- }
- return (signed PY_LONG_LONG)PyLong_AsUnsignedLongLong(x);
- } else {
- return (signed PY_LONG_LONG)PyLong_AsLongLong(x);
- }
- } else {
- signed PY_LONG_LONG val;
- PyObject *tmp = __Pyx_PyNumber_Int(x);
- if (!tmp) return (signed PY_LONG_LONG)-1;
- val = __Pyx_PyInt_AsSignedLongLong(tmp);
- Py_DECREF(tmp);
- return val;
- }
-}
-
-static int __Pyx_check_binary_version(void) {
- char ctversion[4], rtversion[4];
- PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION);
- PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion());
- if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) {
- char message[200];
- PyOS_snprintf(message, sizeof(message),
- "compiletime version %s of module '%.100s' "
- "does not match runtime version %s",
- ctversion, __Pyx_MODULE_NAME, rtversion);
- #if PY_VERSION_HEX < 0x02050000
- return PyErr_Warn(NULL, message);
- #else
- return PyErr_WarnEx(NULL, message, 1);
- #endif
- }
- return 0;
-}
-
-static int __Pyx_SetVtable(PyObject *dict, void *vtable) {
-#if PY_VERSION_HEX >= 0x02070000 && !(PY_MAJOR_VERSION==3&&PY_MINOR_VERSION==0)
- PyObject *ob = PyCapsule_New(vtable, 0, 0);
-#else
- PyObject *ob = PyCObject_FromVoidPtr(vtable, 0);
-#endif
- if (!ob)
- goto bad;
- if (PyDict_SetItemString(dict, "__pyx_vtable__", ob) < 0)
- goto bad;
- Py_DECREF(ob);
- return 0;
-bad:
- Py_XDECREF(ob);
- return -1;
-}
-
-#ifndef __PYX_HAVE_RT_ImportType
-#define __PYX_HAVE_RT_ImportType
-static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name,
- size_t size, int strict)
-{
- PyObject *py_module = 0;
- PyObject *result = 0;
- PyObject *py_name = 0;
- char warning[200];
-
- py_module = __Pyx_ImportModule(module_name);
- if (!py_module)
- goto bad;
- #if PY_MAJOR_VERSION < 3
- py_name = PyString_FromString(class_name);
- #else
- py_name = PyUnicode_FromString(class_name);
- #endif
- if (!py_name)
- goto bad;
- result = PyObject_GetAttr(py_module, py_name);
- Py_DECREF(py_name);
- py_name = 0;
- Py_DECREF(py_module);
- py_module = 0;
- if (!result)
- goto bad;
- if (!PyType_Check(result)) {
- PyErr_Format(PyExc_TypeError,
- "%s.%s is not a type object",
- module_name, class_name);
- goto bad;
- }
- if (!strict && ((PyTypeObject *)result)->tp_basicsize > (Py_ssize_t)size) {
- PyOS_snprintf(warning, sizeof(warning),
- "%s.%s size changed, may indicate binary incompatibility",
- module_name, class_name);
- #if PY_VERSION_HEX < 0x02050000
- if (PyErr_Warn(NULL, warning) < 0) goto bad;
- #else
- if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad;
- #endif
- }
- else if (((PyTypeObject *)result)->tp_basicsize != (Py_ssize_t)size) {
- PyErr_Format(PyExc_ValueError,
- "%s.%s has the wrong size, try recompiling",
- module_name, class_name);
- goto bad;
- }
- return (PyTypeObject *)result;
-bad:
- Py_XDECREF(py_module);
- Py_XDECREF(result);
- return NULL;
-}
-#endif
-
-#ifndef __PYX_HAVE_RT_ImportModule
-#define __PYX_HAVE_RT_ImportModule
-static PyObject *__Pyx_ImportModule(const char *name) {
- PyObject *py_name = 0;
- PyObject *py_module = 0;
-
- #if PY_MAJOR_VERSION < 3
- py_name = PyString_FromString(name);
- #else
- py_name = PyUnicode_FromString(name);
- #endif
- if (!py_name)
- goto bad;
- py_module = PyImport_Import(py_name);
- Py_DECREF(py_name);
- return py_module;
-bad:
- Py_XDECREF(py_name);
- return 0;
-}
-#endif
-
-#include "compile.h"
-#include "frameobject.h"
-#include "traceback.h"
-
-static void __Pyx_AddTraceback(const char *funcname, int __pyx_clineno,
- int __pyx_lineno, const char *__pyx_filename) {
- PyObject *py_srcfile = 0;
- PyObject *py_funcname = 0;
- PyObject *py_globals = 0;
- PyCodeObject *py_code = 0;
- PyFrameObject *py_frame = 0;
-
- #if PY_MAJOR_VERSION < 3
- py_srcfile = PyString_FromString(__pyx_filename);
- #else
- py_srcfile = PyUnicode_FromString(__pyx_filename);
- #endif
- if (!py_srcfile) goto bad;
- if (__pyx_clineno) {
- #if PY_MAJOR_VERSION < 3
- py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, __pyx_clineno);
- #else
- py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, __pyx_clineno);
- #endif
- }
- else {
- #if PY_MAJOR_VERSION < 3
- py_funcname = PyString_FromString(funcname);
- #else
- py_funcname = PyUnicode_FromString(funcname);
- #endif
- }
- if (!py_funcname) goto bad;
- py_globals = PyModule_GetDict(__pyx_m);
- if (!py_globals) goto bad;
- py_code = PyCode_New(
- 0, /*int argcount,*/
- #if PY_MAJOR_VERSION >= 3
- 0, /*int kwonlyargcount,*/
- #endif
- 0, /*int nlocals,*/
- 0, /*int stacksize,*/
- 0, /*int flags,*/
- __pyx_empty_bytes, /*PyObject *code,*/
- __pyx_empty_tuple, /*PyObject *consts,*/
- __pyx_empty_tuple, /*PyObject *names,*/
- __pyx_empty_tuple, /*PyObject *varnames,*/
- __pyx_empty_tuple, /*PyObject *freevars,*/
- __pyx_empty_tuple, /*PyObject *cellvars,*/
- py_srcfile, /*PyObject *filename,*/
- py_funcname, /*PyObject *name,*/
- __pyx_lineno, /*int firstlineno,*/
- __pyx_empty_bytes /*PyObject *lnotab*/
- );
- if (!py_code) goto bad;
- py_frame = PyFrame_New(
- PyThreadState_GET(), /*PyThreadState *tstate,*/
- py_code, /*PyCodeObject *code,*/
- py_globals, /*PyObject *globals,*/
- 0 /*PyObject *locals*/
- );
- if (!py_frame) goto bad;
- py_frame->f_lineno = __pyx_lineno;
- PyTraceBack_Here(py_frame);
-bad:
- Py_XDECREF(py_srcfile);
- Py_XDECREF(py_funcname);
- Py_XDECREF(py_code);
- Py_XDECREF(py_frame);
-}
-
-static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) {
- while (t->p) {
- #if PY_MAJOR_VERSION < 3
- if (t->is_unicode) {
- *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL);
- } else if (t->intern) {
- *t->p = PyString_InternFromString(t->s);
- } else {
- *t->p = PyString_FromStringAndSize(t->s, t->n - 1);
- }
- #else /* Python 3+ has unicode identifiers */
- if (t->is_unicode | t->is_str) {
- if (t->intern) {
- *t->p = PyUnicode_InternFromString(t->s);
- } else if (t->encoding) {
- *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL);
- } else {
- *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1);
- }
- } else {
- *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1);
- }
- #endif
- if (!*t->p)
- return -1;
- ++t;
- }
- return 0;
-}
-
-/* Type Conversion Functions */
-
-static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) {
- int is_true = x == Py_True;
- if (is_true | (x == Py_False) | (x == Py_None)) return is_true;
- else return PyObject_IsTrue(x);
-}
-
-static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x) {
- PyNumberMethods *m;
- const char *name = NULL;
- PyObject *res = NULL;
-#if PY_VERSION_HEX < 0x03000000
- if (PyInt_Check(x) || PyLong_Check(x))
-#else
- if (PyLong_Check(x))
-#endif
- return Py_INCREF(x), x;
- m = Py_TYPE(x)->tp_as_number;
-#if PY_VERSION_HEX < 0x03000000
- if (m && m->nb_int) {
- name = "int";
- res = PyNumber_Int(x);
- }
- else if (m && m->nb_long) {
- name = "long";
- res = PyNumber_Long(x);
- }
-#else
- if (m && m->nb_int) {
- name = "int";
- res = PyNumber_Long(x);
- }
-#endif
- if (res) {
-#if PY_VERSION_HEX < 0x03000000
- if (!PyInt_Check(res) && !PyLong_Check(res)) {
-#else
- if (!PyLong_Check(res)) {
-#endif
- PyErr_Format(PyExc_TypeError,
- "__%s__ returned non-%s (type %.200s)",
- name, name, Py_TYPE(res)->tp_name);
- Py_DECREF(res);
- return NULL;
- }
- }
- else if (!PyErr_Occurred()) {
- PyErr_SetString(PyExc_TypeError,
- "an integer is required");
- }
- return res;
-}
-
-static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
- Py_ssize_t ival;
- PyObject* x = PyNumber_Index(b);
- if (!x) return -1;
- ival = PyInt_AsSsize_t(x);
- Py_DECREF(x);
- return ival;
-}
-
-static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
-#if PY_VERSION_HEX < 0x02050000
- if (ival <= LONG_MAX)
- return PyInt_FromLong((long)ival);
- else {
- unsigned char *bytes = (unsigned char *) &ival;
- int one = 1; int little = (int)*(unsigned char*)&one;
- return _PyLong_FromByteArray(bytes, sizeof(size_t), little, 0);
- }
-#else
- return PyInt_FromSize_t(ival);
-#endif
-}
-
-static CYTHON_INLINE size_t __Pyx_PyInt_AsSize_t(PyObject* x) {
- unsigned PY_LONG_LONG val = __Pyx_PyInt_AsUnsignedLongLong(x);
- if (unlikely(val == (unsigned PY_LONG_LONG)-1 && PyErr_Occurred())) {
- return (size_t)-1;
- } else if (unlikely(val != (unsigned PY_LONG_LONG)(size_t)val)) {
- PyErr_SetString(PyExc_OverflowError,
- "value too large to convert to size_t");
- return (size_t)-1;
- }
- return (size_t)val;
-}
-
-
-#endif /* Py_PYTHON_H */
--
Packaging of HTSeq for Debian.
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