[med-svn] [SCM] r-bioc-limma branch, meta, updated. meta/3.12.0_dfsg-1-2-g9961a91
Charles Plessy
plessy at debian.org
Sun Aug 4 08:54:43 UTC 2013
The following commit has been merged in the meta branch:
commit 589753ba9b4548f8e567d65093afbfa480e70959
Author: Charles Plessy <plessy at debian.org>
Date: Sun Aug 4 17:42:05 2013 +0900
Build logs for version 3.16.3~dfsg-1.
diff --git a/armel.log b/armel.log
index 7c5bb0e..d331bdb 100644
--- a/armel.log
+++ b/armel.log
@@ -1,61 +1,67 @@
-From buildd at arnold.debian.org Fri Jul 20 15:51:22 2012
-Return-path: <buildd at arnold.debian.org>
+From buildd at ancina.debian.org Fri May 17 15:14:52 2013
+Return-path: <buildd at ancina.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
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CN=merikanto.debian.org,
EMAIL=hostmaster at merikanto.debian.org (verified)
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- (Exim 4.72) (envelope-from <buildd at arnold.debian.org>)
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-Received: from arnold.islands.arm.com ([217.140.96.57] helo=arnold.debian.org)
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- CN=arnold.debian.org, EMAIL=hostmaster at arnold.debian.org (verified)
+ CN=ancina.debian.org, EMAIL=hostmaster at ancina.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at arnold.debian.org>)
- id 1SsFU8-0005hF-Ut
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-Date: Fri, 20 Jul 2012 15:51:19 +0000
-Message-Id: <E1SsFU7-0000qz-SG at arnold.debian.org>
-From: buildd on arnold <buildd at arnold.debian.org>
-To: buildd-porters at arnold.debian.org,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.12.0~dfsg-1 on armel
+ (Exim 4.72) (envelope-from <buildd at ancina.debian.org>)
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+Received: from buildd by ancina.debian.org with local (Exim 4.72)
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+Message-Id: <E1UdMMm-0003i6-Sp at ancina.debian.org>
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
+Date: Fri, 17 May 2013 15:14:44 +0000
+From: buildd on ancina <buildd at ancina.debian.org>
+To: buildd-porters at ancina.debian.org,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.16.3~dfsg-1 on armel
(dist=sid)
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
+Key-Id: 06BDA360
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on arnold.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on ancina.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.12.0~dfsg-1 (armel) 20 Jul 2012 15:42 ║
+║ r-bioc-limma 3.16.3~dfsg-1 (armel) 17 May 2013 15:10 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.12.0~dfsg-1
-Source Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
+Source Version: 3.16.3~dfsg-1
Architecture: armel
-Get:1 http://ftp.uk.debian.org unstable InRelease [249 kB]
-Get:2 http://incoming.debian.org unstable InRelease [249 kB]
-Get:3 http://ftp.uk.debian.org unstable/main Sources [6339 kB]
-Ign http://incoming.debian.org InRelease
-Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org unstable/main Sources [6339 kB]
-Get:6 http://ftp.uk.debian.org unstable/contrib Sources [54.8 kB]
-Get:7 http://ftp.uk.debian.org unstable/non-free Sources [97.9 kB]
-Get:8 http://ftp.uk.debian.org unstable/main armel Packages [5980 kB]
-Get:9 http://incoming.debian.org unstable/contrib Sources [54.8 kB]
-Get:10 http://incoming.debian.org unstable/non-free Sources [97.9 kB]
-Get:11 http://incoming.debian.org unstable/main armel Packages [5980 kB]
-Get:12 http://ftp.uk.debian.org unstable/contrib armel Packages [37.8 kB]
-Get:13 http://incoming.debian.org unstable/contrib armel Packages [37.8 kB]
-Get:14 http://incoming.debian.org Release [1601 B]
-Get:15 http://incoming.debian.org Sources [14.2 kB]
-Get:16 http://incoming.debian.org Packages [156 kB]
-Fetched 25.7 MB in 1min 38s (260 kB/s)
+Get:1 http://ftp.de.debian.org sid InRelease [205 kB]
+Get:2 http://incoming.debian.org sid InRelease [205 kB]
+Hit http://ftp.de.debian.org sid/main Sources/DiffIndex
+Get:3 http://incoming.debian.org buildd-unstable InRelease [111 kB]
+Hit http://ftp.de.debian.org sid/contrib Sources/DiffIndex
+Hit http://ftp.de.debian.org sid/main armel Packages/DiffIndex
+Hit http://ftp.de.debian.org sid/contrib armel Packages/DiffIndex
+Hit http://ftp.de.debian.org sid/contrib Translation-en/DiffIndex
+Hit http://ftp.de.debian.org sid/main Translation-en/DiffIndex
+Hit http://incoming.debian.org sid/main Sources/DiffIndex
+Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
+Hit http://incoming.debian.org sid/main armel Packages/DiffIndex
+Hit http://incoming.debian.org sid/contrib armel Packages/DiffIndex
+Hit http://incoming.debian.org sid/contrib Translation-en/DiffIndex
+Hit http://incoming.debian.org sid/main Translation-en/DiffIndex
+Get:4 http://incoming.debian.org buildd-unstable/main Sources [107 kB]
+Get:5 http://incoming.debian.org buildd-unstable/contrib Sources [873 B]
+Get:6 http://incoming.debian.org buildd-unstable/main armel Packages [58.6 kB]
+Get:7 http://incoming.debian.org buildd-unstable/contrib armel Packages [14 B]
+Get:8 http://incoming.debian.org buildd-unstable/contrib Translation-en [585 B]
+Get:9 http://incoming.debian.org buildd-unstable/main Translation-en [78.6 kB]
+Fetched 766 kB in 17s (44.6 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -76,11 +82,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 288 kB of source archives.
-Get:1 http://ftp.uk.debian.org/debian/ unstable/main r-bioc-limma 3.12.0~dfsg-1 (dsc) [2030 B]
-Get:2 http://ftp.uk.debian.org/debian/ unstable/main r-bioc-limma 3.12.0~dfsg-1 (tar) [283 kB]
-Get:3 http://ftp.uk.debian.org/debian/ unstable/main r-bioc-limma 3.12.0~dfsg-1 (diff) [3098 B]
-Fetched 288 kB in 0s (1068 kB/s)
+Need to get 1058 kB of source archives.
+Get:1 http://ftp.de.debian.org/debian/ sid/main r-bioc-limma 3.16.3~dfsg-1 (dsc) [1409 B]
+Get:2 http://ftp.de.debian.org/debian/ sid/main r-bioc-limma 3.16.3~dfsg-1 (tar) [1052 kB]
+Get:3 http://ftp.de.debian.org/debian/ sid/main r-bioc-limma 3.16.3~dfsg-1 (diff) [4167 B]
+Fetched 1058 kB in 0s (1421 kB/s)
Download complete and in download only mode
Check arch
@@ -93,481 +99,394 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
-build-essential: already installed (11.5)
+build-essential: already installed (11.6)
fakeroot: already installed (1.18.4-2)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 13 not upgraded.
+The following packages were automatically installed and are no longer required:
+ libbogl0 libnewt0.52 libprocps0 mime-support
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 8 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 13 not upgraded.
+The following packages were automatically installed and are no longer required:
+ libbogl0 libnewt0.52 libprocps0 mime-support
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 8 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev
Checking for already installed dependencies...
-base-files: already installed (6.11)
+base-files: already installed (7.2)
base-passwd: already installed (3.5.26)
-bash: already installed (4.2-3)
-coreutils: already installed (8.13-3.2)
+bash: already installed (4.2+dfsg-1)
+bsdutils: already installed (1:2.20.1-5.4)
+coreutils: already installed (8.13-3.3)
dash: already installed (0.5.7-3)
-debianutils: already installed (4.3.2)
-diffutils: already installed (1:3.2-6)
-dpkg: already installed (1.16.7)
-e2fsprogs: already installed (1.42.4-3)
-findutils: already installed (4.4.2-4)
-grep: already installed (2.12-2)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1.1)
+findutils: already installed (4.4.2-5)
+grep: already installed (2.14-1)
gzip: already installed (1.5-1.1)
-hostname: already installed (3.11)
-ncurses-base: already installed (5.9-10)
-ncurses-bin: already installed (5.9-10)
-perl-base: already installed (5.14.2-12)
-sed: already installed (4.2.1-10)
+hostname: already installed (3.12)
+libc-bin: already installed (2.17-2)
login: already installed (1:4.1.5.1-1)
-sysvinit-utils: already installed (2.88dsf-28)
-sysvinit: already installed (2.88dsf-28)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-5.1)
-mount: already installed (2.20.1-5.1)
-util-linux: already installed (2.20.1-5.1)
-libc6-dev: already installed (2.13-34)
-gcc: already installed (4:4.6.3-7 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-7 >= 4:4.4.3 is satisfied)
+mount: already installed (2.20.1-5.4)
+ncurses-base: already installed (5.9+20130504-1)
+ncurses-bin: already installed (5.9+20130504-1)
+perl-base: already installed (5.14.2-21)
+sed: already installed (4.2.2-1)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-5)
+util-linux: already installed (2.20.1-5.4)
+libc6-dev: already installed (2.17-3)
+gcc: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.7 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120608
+Using default version 9.20130516
cdbs: missing
r-base-dev: missing
-Using default version 2.15.1-4
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
+The following packages were automatically installed and are no longer required:
+ libbogl0 libnewt0.52 libprocps0 mime-support
+Use 'apt-get autoremove' to remove them.
The following extra packages will be installed:
- bsdmainutils file fontconfig fontconfig-config gcc-4.7-base gettext
- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
+ file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libasprintf-dev
libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3
- libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgcc1
- libgettextpo0 libgfortran3 libglib2.0-0 libgomp1 libice6 libjbig0 libjpeg8
+ libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6 libgettextpo-dev
+ libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8
libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libstdc++6 libthai-data libthai0 libtiff4
- libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
- libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
- libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
- x11-common xdg-utils zip zlib1g-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
+ libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 libx11-6
+ libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
+ libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
+ tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts dh-make gettext-doc
- gfortran-doc gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
- ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
- r-mathlib r-base-html texlive-base texlive-latex-base
- texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
- texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
- texi2html tcl-tclreadline gvfs-bin
+ devscripts dh-make gettext-doc gfortran-doc gfortran-4.6-doc
+ libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base
+ texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
+ texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
+ texlive-latex-extra texinfo texi2html tcl-tclreadline gvfs-bin
Recommended packages:
autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
- xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
- x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
- libx11-protocol-perl x11-utils x11-xserver-utils
+ libmail-sendmail-perl r-recommended r-doc-html xterm x-terminal-emulator
+ libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
+ x11-xserver-utils
The following NEW packages will be installed:
- bsdmainutils cdbs debhelper file fontconfig fontconfig-config gettext
+ cdbs debhelper file fontconfig fontconfig-config fonts-dejavu-core gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
- libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3
- libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgettextpo0
- libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev
- liblapack-dev liblapack3 libmagic1 libncurses5-dev libpango1.0-0
- libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
- libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
- libsm6 libthai-data libthai0 libtiff4 libtinfo-dev libunistring0 libx11-6
+ libasprintf-dev libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6
+ libgettextpo-dev libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
+ libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 libx11-6
libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
zlib1g-dev
-The following packages will be upgraded:
- gcc-4.7-base libgcc1 libgomp1 libstdc++6
-4 upgraded, 79 newly installed, 0 to remove and 9 not upgraded.
-Need to get 53.7 MB of archives.
+0 upgraded, 79 newly installed, 0 to remove and 8 not upgraded.
+Need to get 21.4 MB/52.3 MB of archives.
After this operation, 119 MB of additional disk space will be used.
-Get:1 http://ftp.uk.debian.org/debian/ unstable/main libgomp1 armel 4.7.1-5 [30.9 kB]
-Get:2 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.7-base armel 4.7.1-5 [141 kB]
-Get:3 http://ftp.uk.debian.org/debian/ unstable/main libstdc++6 armel 4.7.1-5 [288 kB]
-Get:4 http://ftp.uk.debian.org/debian/ unstable/main libgcc1 armel 1:4.7.1-5 [56.6 kB]
-Get:5 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armel 1.2.1-1 [34.9 kB]
-Get:6 http://ftp.uk.debian.org/debian/ unstable/main libasprintf0c2 armel 0.18.1.1-9 [26.4 kB]
-Get:7 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armel 5.11-2 [200 kB]
-Get:8 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armel 1:8.30-5 [241 kB]
-Get:9 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armel 2.8.0+dfsg1-4 [824 kB]
-Get:10 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 armel 2.1.0-1 [116 kB]
-Get:11 http://ftp.uk.debian.org/debian/ unstable/main libfreetype6 armel 2.4.9-1 [401 kB]
-Get:12 http://ftp.uk.debian.org/debian/ unstable/main ucf all 3.0025+nmu3 [70.8 kB]
-Get:13 http://ftp.uk.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:14 http://ftp.uk.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-6 [232 kB]
-Get:15 http://ftp.uk.debian.org/debian/ unstable/main libfontconfig1 armel 2.9.0-6 [287 kB]
-Get:16 http://ftp.uk.debian.org/debian/ unstable/main libpixman-1-0 armel 0.26.0-3 [414 kB]
-Get:17 http://ftp.uk.debian.org/debian/ unstable/main libpng12-0 armel 1.2.49-2 [182 kB]
-Get:18 http://ftp.uk.debian.org/debian/ unstable/main libxau6 armel 1:1.0.7-1 [17.6 kB]
-Get:19 http://ftp.uk.debian.org/debian/ unstable/main libxdmcp6 armel 1:1.1.1-1 [25.3 kB]
-Get:20 http://ftp.uk.debian.org/debian/ unstable/main libxcb1 armel 1.8.1-1 [42.8 kB]
-Get:21 http://ftp.uk.debian.org/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
-Get:22 http://ftp.uk.debian.org/debian/ unstable/main libx11-6 armel 2:1.5.0-1 [840 kB]
-Get:23 http://ftp.uk.debian.org/debian/ unstable/main libxcb-render0 armel 1.8.1-1 [16.2 kB]
-Get:24 http://ftp.uk.debian.org/debian/ unstable/main libxcb-shm0 armel 1.8.1-1 [9770 B]
-Get:25 http://ftp.uk.debian.org/debian/ unstable/main libxrender1 armel 1:0.9.7-1 [30.7 kB]
-Get:26 http://ftp.uk.debian.org/debian/ unstable/main libcairo2 armel 1.12.2-2 [866 kB]
-Get:27 http://ftp.uk.debian.org/debian/ unstable/main libffi5 armel 3.0.10-3 [22.8 kB]
-Get:28 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armel 2.32.3-1 [1962 kB]
-Get:29 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armel 0.6.5-1 [142 kB]
-Get:30 http://ftp.uk.debian.org/debian/ unstable/main libdatrie1 armel 0.2.5-3 [26.6 kB]
-Get:31 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armel 0.9.3-5 [406 kB]
-Get:32 http://ftp.uk.debian.org/debian/ unstable/main libgettextpo0 armel 0.18.1.1-9 [132 kB]
-Get:33 http://ftp.uk.debian.org/debian/ unstable/main libgfortran3 armel 4.7.1-5 [247 kB]
-Get:34 http://ftp.uk.debian.org/debian/ unstable/main x11-common all 1:7.7+1 [278 kB]
-Get:35 http://ftp.uk.debian.org/debian/ unstable/main libice6 armel 2:1.0.8-2 [56.5 kB]
-Get:36 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8 armel 8d-1 [153 kB]
-Get:37 http://ftp.uk.debian.org/debian/ unstable/main libthai-data all 0.1.18-1 [205 kB]
-Get:38 http://ftp.uk.debian.org/debian/ unstable/main libthai0 armel 0.1.18-1 [42.6 kB]
-Get:39 http://ftp.uk.debian.org/debian/ unstable/main libxft2 armel 2.3.1-1 [56.6 kB]
-Get:40 http://ftp.uk.debian.org/debian/ unstable/main fontconfig armel 2.9.0-6 [349 kB]
-Get:41 http://ftp.uk.debian.org/debian/ unstable/main libpango1.0-0 armel 1.30.0-1 [429 kB]
-Get:42 http://ftp.uk.debian.org/debian/ unstable/main libpaper1 armel 1.1.24+nmu2 [22.8 kB]
-Get:43 http://ftp.uk.debian.org/debian/ unstable/main libpcrecpp0 armel 1:8.30-5 [124 kB]
-Get:44 http://ftp.uk.debian.org/debian/ unstable/main libsm6 armel 2:1.2.1-2 [32.5 kB]
-Get:45 http://ftp.uk.debian.org/debian/ unstable/main libjbig0 armel 2.0-2 [30.9 kB]
-Get:46 http://ftp.uk.debian.org/debian/ unstable/main libtiff4 armel 3.9.6-6 [190 kB]
-Get:47 http://ftp.uk.debian.org/debian/ unstable/main libxext6 armel 2:1.3.1-2 [48.8 kB]
-Get:48 http://ftp.uk.debian.org/debian/ unstable/main libxss1 armel 1:1.2.2-1 [16.6 kB]
-Get:49 http://ftp.uk.debian.org/debian/ unstable/main libxt6 armel 1:1.1.3-1 [180 kB]
-Get:50 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armel 9.0.3 [208 kB]
-Get:51 http://ftp.uk.debian.org/debian/ unstable/main groff-base armel 1.21-9 [1079 kB]
-Get:52 http://ftp.uk.debian.org/debian/ unstable/main man-db armel 2.6.2-1 [1025 kB]
-Get:53 http://ftp.uk.debian.org/debian/ unstable/main file armel 5.11-2 [51.4 kB]
-Get:54 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armel 0.18.1.1-9 [138 kB]
-Get:55 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.116 [79.9 kB]
-Get:56 http://ftp.uk.debian.org/debian/ unstable/main html2text armel 1.3.2a-15 [97.0 kB]
-Get:57 http://ftp.uk.debian.org/debian/ unstable/main gettext armel 0.18.1.1-9 [1888 kB]
-Get:58 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:59 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:60 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 9.20120608 [700 kB]
-Get:61 http://ftp.uk.debian.org/debian/ unstable/main gfortran-4.6 armel 4.6.3-8 [4918 kB]
-Get:62 http://ftp.uk.debian.org/debian/ unstable/main gfortran armel 4:4.6.3-7 [1132 B]
-Get:63 http://ftp.uk.debian.org/debian/ unstable/main libblas3 armel 1.2.20110419-5 [273 kB]
-Get:64 http://ftp.uk.debian.org/debian/ unstable/main libblas-dev armel 1.2.20110419-5 [279 kB]
-Get:65 http://ftp.uk.debian.org/debian/ unstable/main libbz2-dev armel 1.0.6-3 [34.1 kB]
-Get:66 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8-dev armel 8d-1 [260 kB]
-Get:67 http://ftp.uk.debian.org/debian/ unstable/main liblapack3 armel 3.4.1-5 [2216 kB]
-Get:68 http://ftp.uk.debian.org/debian/ unstable/main liblapack-dev armel 3.4.1-5 [2561 kB]
-Get:69 http://ftp.uk.debian.org/debian/ unstable/main libtinfo-dev armel 5.9-10 [90.3 kB]
-Get:70 http://ftp.uk.debian.org/debian/ unstable/main libncurses5-dev armel 5.9-10 [205 kB]
-Get:71 http://ftp.uk.debian.org/debian/ unstable/main libpaper-utils armel 1.1.24+nmu2 [18.8 kB]
-Get:72 http://ftp.uk.debian.org/debian/ unstable/main libpcre3-dev armel 1:8.30-5 [343 kB]
-Get:73 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armel 1:1.2.7.dfsg-13 [211 kB]
-Get:74 http://ftp.uk.debian.org/debian/ unstable/main libpng12-dev armel 1.2.49-2 [261 kB]
-Get:75 http://ftp.uk.debian.org/debian/ unstable/main libreadline6-dev armel 6.2-8 [238 kB]
-Get:76 http://ftp.uk.debian.org/debian/ unstable/main libreadline-dev armel 6.2-8 [890 B]
-Get:77 http://ftp.uk.debian.org/debian/ unstable/main zip armel 3.0-6 [333 kB]
-Get:78 http://ftp.uk.debian.org/debian/ unstable/main unzip armel 6.0-7 [193 kB]
-Get:79 http://ftp.uk.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB]
-Get:80 http://ftp.uk.debian.org/debian/ unstable/main tcl8.5 armel 8.5.11-2 [1573 kB]
-Get:81 http://ftp.uk.debian.org/debian/ unstable/main tk8.5 armel 8.5.11-2 [1132 kB]
-Get:82 http://ftp.uk.debian.org/debian/ unstable/main r-base-core armel 2.15.1-4 [20.7 MB]
-Get:83 http://ftp.uk.debian.org/debian/ unstable/main r-base-dev all 2.15.1-4 [3882 B]
-debconf: delaying package configuration, since apt-utils is not installed
-Fetched 53.7 MB in 26s (2048 kB/s)
-(Reading database ... 10636 files and directories currently installed.)
-Preparing to replace libgomp1:armel 4.7.1-2 (using .../libgomp1_4.7.1-5_armel.deb) ...
-Unpacking replacement libgomp1:armel ...
-Preparing to replace gcc-4.7-base:armel 4.7.1-2 (using .../gcc-4.7-base_4.7.1-5_armel.deb) ...
-Unpacking replacement gcc-4.7-base:armel ...
-Setting up gcc-4.7-base:armel (4.7.1-5) ...
-(Reading database ... 10636 files and directories currently installed.)
-Preparing to replace libstdc++6:armel 4.7.1-2 (using .../libstdc++6_4.7.1-5_armel.deb) ...
-Unpacking replacement libstdc++6:armel ...
-Setting up libstdc++6:armel (4.7.1-5) ...
-(Reading database ... 10636 files and directories currently installed.)
-Preparing to replace libgcc1:armel 1:4.7.1-2 (using .../libgcc1_1%3a4.7.1-5_armel.deb) ...
-Unpacking replacement libgcc1:armel ...
-Setting up libgcc1:armel (1:4.7.1-5) ...
+Get:1 http://ftp.de.debian.org/debian/ sid/main r-base-dev all 3.0.1~20130512-1 [3910 B]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-base-core armel 3.0.1-1 [21.4 MB]
+
Extracting templates from packages: 37%
Extracting templates from packages: 75%
Extracting templates from packages: 100%
+Preconfiguring packages ...
+Fetched 21.4 MB in 11s (1872 kB/s)
Selecting previously unselected package libpipeline1:armel.
-(Reading database ... 10636 files and directories currently installed.)
-Unpacking libpipeline1:armel (from .../libpipeline1_1.2.1-1_armel.deb) ...
+(Reading database ... 14695 files and directories currently installed.)
+Unpacking libpipeline1:armel (from .../libpipeline1_1.2.3-1_armel.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.22.2-2_armel.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.3-6_armel.deb) ...
Selecting previously unselected package libasprintf0c2:armel.
-Unpacking libasprintf0c2:armel (from .../libasprintf0c2_0.18.1.1-9_armel.deb) ...
+Unpacking libasprintf0c2:armel (from .../libasprintf0c2_0.18.1.1-10_armel.deb) ...
Selecting previously unselected package libmagic1:armel.
-Unpacking libmagic1:armel (from .../libmagic1_5.11-2_armel.deb) ...
-Selecting previously unselected package libpcre3:armel.
-Unpacking libpcre3:armel (from .../libpcre3_1%3a8.30-5_armel.deb) ...
+Unpacking libmagic1:armel (from .../libmagic1_1%3a5.14-1_armel.deb) ...
Selecting previously unselected package libxml2:armel.
-Unpacking libxml2:armel (from .../libxml2_2.8.0+dfsg1-4_armel.deb) ...
+Unpacking libxml2:armel (from .../libxml2_2.8.0+dfsg1-7+nmu1_armel.deb) ...
Selecting previously unselected package libexpat1:armel.
-Unpacking libexpat1:armel (from .../libexpat1_2.1.0-1_armel.deb) ...
+Unpacking libexpat1:armel (from .../libexpat1_2.1.0-3_armel.deb) ...
Selecting previously unselected package libfreetype6:armel.
-Unpacking libfreetype6:armel (from .../libfreetype6_2.4.9-1_armel.deb) ...
+Unpacking libfreetype6:armel (from .../libfreetype6_2.4.9-1.1_armel.deb) ...
Selecting previously unselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ...
Moving old data out of the way
+Selecting previously unselected package fonts-dejavu-core.
+Unpacking fonts-dejavu-core (from .../fonts-dejavu-core_2.33+svn2514-3_all.deb) ...
Selecting previously unselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33+svn2514-3_all.deb) ...
Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-6_all.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ...
Selecting previously unselected package libfontconfig1:armel.
-Unpacking libfontconfig1:armel (from .../libfontconfig1_2.9.0-6_armel.deb) ...
+Unpacking libfontconfig1:armel (from .../libfontconfig1_2.9.0-7.1_armel.deb) ...
Selecting previously unselected package libpixman-1-0:armel.
-Unpacking libpixman-1-0:armel (from .../libpixman-1-0_0.26.0-3_armel.deb) ...
-Selecting previously unselected package libpng12-0:armel.
-Unpacking libpng12-0:armel (from .../libpng12-0_1.2.49-2_armel.deb) ...
+Unpacking libpixman-1-0:armel (from .../libpixman-1-0_0.26.0-4_armel.deb) ...
Selecting previously unselected package libxau6:armel.
Unpacking libxau6:armel (from .../libxau6_1%3a1.0.7-1_armel.deb) ...
Selecting previously unselected package libxdmcp6:armel.
Unpacking libxdmcp6:armel (from .../libxdmcp6_1%3a1.1.1-1_armel.deb) ...
Selecting previously unselected package libxcb1:armel.
-Unpacking libxcb1:armel (from .../libxcb1_1.8.1-1_armel.deb) ...
+Unpacking libxcb1:armel (from .../libxcb1_1.8.1-2_armel.deb) ...
Selecting previously unselected package libx11-data.
Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ...
Selecting previously unselected package libx11-6:armel.
Unpacking libx11-6:armel (from .../libx11-6_2%3a1.5.0-1_armel.deb) ...
Selecting previously unselected package libxcb-render0:armel.
-Unpacking libxcb-render0:armel (from .../libxcb-render0_1.8.1-1_armel.deb) ...
+Unpacking libxcb-render0:armel (from .../libxcb-render0_1.8.1-2_armel.deb) ...
Selecting previously unselected package libxcb-shm0:armel.
-Unpacking libxcb-shm0:armel (from .../libxcb-shm0_1.8.1-1_armel.deb) ...
+Unpacking libxcb-shm0:armel (from .../libxcb-shm0_1.8.1-2_armel.deb) ...
+Selecting previously unselected package libxext6:armel.
+Unpacking libxext6:armel (from .../libxext6_2%3a1.3.1-2_armel.deb) ...
Selecting previously unselected package libxrender1:armel.
Unpacking libxrender1:armel (from .../libxrender1_1%3a0.9.7-1_armel.deb) ...
Selecting previously unselected package libcairo2:armel.
-Unpacking libcairo2:armel (from .../libcairo2_1.12.2-2_armel.deb) ...
-Selecting previously unselected package libffi5:armel.
-Unpacking libffi5:armel (from .../libffi5_3.0.10-3_armel.deb) ...
+Unpacking libcairo2:armel (from .../libcairo2_1.12.14-4_armel.deb) ...
+Selecting previously unselected package libffi6:armel.
+Unpacking libffi6:armel (from .../libffi6_3.0.13-4_armel.deb) ...
Selecting previously unselected package libglib2.0-0:armel.
-Unpacking libglib2.0-0:armel (from .../libglib2.0-0_2.32.3-1_armel.deb) ...
+Unpacking libglib2.0-0:armel (from .../libglib2.0-0_2.36.1-2build1_armel.deb) ...
Selecting previously unselected package libcroco3:armel.
-Unpacking libcroco3:armel (from .../libcroco3_0.6.5-1_armel.deb) ...
+Unpacking libcroco3:armel (from .../libcroco3_0.6.8-2_armel.deb) ...
Selecting previously unselected package libdatrie1:armel.
-Unpacking libdatrie1:armel (from .../libdatrie1_0.2.5-3_armel.deb) ...
+Unpacking libdatrie1:armel (from .../libdatrie1_0.2.6-2_armel.deb) ...
Selecting previously unselected package libunistring0:armel.
Unpacking libunistring0:armel (from .../libunistring0_0.9.3-5_armel.deb) ...
Selecting previously unselected package libgettextpo0:armel.
-Unpacking libgettextpo0:armel (from .../libgettextpo0_0.18.1.1-9_armel.deb) ...
+Unpacking libgettextpo0:armel (from .../libgettextpo0_0.18.1.1-10_armel.deb) ...
Selecting previously unselected package libgfortran3:armel.
-Unpacking libgfortran3:armel (from .../libgfortran3_4.7.1-5_armel.deb) ...
+Unpacking libgfortran3:armel (from .../libgfortran3_4.8.0-7_armel.deb) ...
Selecting previously unselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.7+1_all.deb) ...
+Unpacking x11-common (from .../x11-common_1%3a7.7+3_all.deb) ...
Selecting previously unselected package libice6:armel.
Unpacking libice6:armel (from .../libice6_2%3a1.0.8-2_armel.deb) ...
Selecting previously unselected package libjpeg8:armel.
Unpacking libjpeg8:armel (from .../libjpeg8_8d-1_armel.deb) ...
Selecting previously unselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.18-1_all.deb) ...
+Unpacking libthai-data (from .../libthai-data_0.1.19-2_all.deb) ...
Selecting previously unselected package libthai0:armel.
-Unpacking libthai0:armel (from .../libthai0_0.1.18-1_armel.deb) ...
+Unpacking libthai0:armel (from .../libthai0_0.1.19-2_armel.deb) ...
Selecting previously unselected package libxft2:armel.
Unpacking libxft2:armel (from .../libxft2_2.3.1-1_armel.deb) ...
Selecting previously unselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.9.0-6_armel.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_armel.deb) ...
Selecting previously unselected package libpango1.0-0:armel.
Unpacking libpango1.0-0:armel (from .../libpango1.0-0_1.30.0-1_armel.deb) ...
Selecting previously unselected package libpaper1:armel.
Unpacking libpaper1:armel (from .../libpaper1_1.1.24+nmu2_armel.deb) ...
Selecting previously unselected package libpcrecpp0:armel.
-Unpacking libpcrecpp0:armel (from .../libpcrecpp0_1%3a8.30-5_armel.deb) ...
+Unpacking libpcrecpp0:armel (from .../libpcrecpp0_1%3a8.31-2_armel.deb) ...
Selecting previously unselected package libsm6:armel.
Unpacking libsm6:armel (from .../libsm6_2%3a1.2.1-2_armel.deb) ...
Selecting previously unselected package libjbig0:armel.
Unpacking libjbig0:armel (from .../libjbig0_2.0-2_armel.deb) ...
-Selecting previously unselected package libtiff4:armel.
-Unpacking libtiff4:armel (from .../libtiff4_3.9.6-6_armel.deb) ...
-Selecting previously unselected package libxext6:armel.
-Unpacking libxext6:armel (from .../libxext6_2%3a1.3.1-2_armel.deb) ...
+Selecting previously unselected package libtiff5:armel.
+Unpacking libtiff5:armel (from .../libtiff5_4.0.2-6_armel.deb) ...
Selecting previously unselected package libxss1:armel.
Unpacking libxss1:armel (from .../libxss1_1%3a1.2.2-1_armel.deb) ...
Selecting previously unselected package libxt6:armel.
Unpacking libxt6:armel (from .../libxt6_1%3a1.1.3-1_armel.deb) ...
-Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_armel.deb) ...
-Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-9_armel.deb) ...
-Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.2-1_armel.deb) ...
Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.11-2_armel.deb) ...
+Unpacking file (from .../file_1%3a5.14-1_armel.deb) ...
Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_armel.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_armel.deb) ...
Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.116_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_armel.deb) ...
+Selecting previously unselected package libasprintf-dev:armel.
+Unpacking libasprintf-dev:armel (from .../libasprintf-dev_0.18.1.1-10_armel.deb) ...
+Selecting previously unselected package libgettextpo-dev:armel.
+Unpacking libgettextpo-dev:armel (from .../libgettextpo-dev_0.18.1.1-10_armel.deb) ...
Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-9_armel.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-10_armel.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20130516_all.deb) ...
Selecting previously unselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-8_armel.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.4-2_armel.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.3-7_armel.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.3-8_armel.deb) ...
Selecting previously unselected package libblas3.
Unpacking libblas3 (from .../libblas3_1.2.20110419-5_armel.deb) ...
Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_armel.deb) ...
Selecting previously unselected package libbz2-dev:armel.
-Unpacking libbz2-dev:armel (from .../libbz2-dev_1.0.6-3_armel.deb) ...
+Unpacking libbz2-dev:armel (from .../libbz2-dev_1.0.6-4_armel.deb) ...
Selecting previously unselected package libjpeg8-dev:armel.
Unpacking libjpeg8-dev:armel (from .../libjpeg8-dev_8d-1_armel.deb) ...
Selecting previously unselected package liblapack3.
-Unpacking liblapack3 (from .../liblapack3_3.4.1-5_armel.deb) ...
+Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_armel.deb) ...
Selecting previously unselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.4.1-5_armel.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.4.2+dfsg-1_armel.deb) ...
Selecting previously unselected package libtinfo-dev:armel.
-Unpacking libtinfo-dev:armel (from .../libtinfo-dev_5.9-10_armel.deb) ...
-Selecting previously unselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-10_armel.deb) ...
+Unpacking libtinfo-dev:armel (from .../libtinfo-dev_5.9+20130504-1_armel.deb) ...
+Selecting previously unselected package libncurses5-dev:armel.
+Unpacking libncurses5-dev:armel (from .../libncurses5-dev_5.9+20130504-1_armel.deb) ...
Selecting previously unselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_armel.deb) ...
-Selecting previously unselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_1%3a8.30-5_armel.deb) ...
+Selecting previously unselected package libpcre3-dev:armel.
+Unpacking libpcre3-dev:armel (from .../libpcre3-dev_1%3a8.31-2_armel.deb) ...
Selecting previously unselected package zlib1g-dev:armel.
-Unpacking zlib1g-dev:armel (from .../zlib1g-dev_1%3a1.2.7.dfsg-13_armel.deb) ...
+Unpacking zlib1g-dev:armel (from .../zlib1g-dev_1%3a1.2.8.dfsg-1_armel.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-2_armel.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_armel.deb) ...
Selecting previously unselected package libreadline6-dev:armel.
-Unpacking libreadline6-dev:armel (from .../libreadline6-dev_6.2-8_armel.deb) ...
+Unpacking libreadline6-dev:armel (from .../libreadline6-dev_6.2+dfsg-0.1_armel.deb) ...
Selecting previously unselected package libreadline-dev:armel.
-Unpacking libreadline-dev:armel (from .../libreadline-dev_6.2-8_armel.deb) ...
+Unpacking libreadline-dev:armel (from .../libreadline-dev_6.2+dfsg-0.1_armel.deb) ...
Selecting previously unselected package zip.
-Unpacking zip (from .../archives/zip_3.0-6_armel.deb) ...
+Unpacking zip (from .../archives/zip_3.0-7_armel.deb) ...
Selecting previously unselected package unzip.
-Unpacking unzip (from .../archives/unzip_6.0-7_armel.deb) ...
+Unpacking unzip (from .../archives/unzip_6.0-9_armel.deb) ...
Selecting previously unselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-6_all.deb) ...
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
Selecting previously unselected package tcl8.5.
Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_armel.deb) ...
Selecting previously unselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.11-2_armel.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.15.1-4_armel.deb) ...
+Unpacking r-base-core (from .../r-base-core_3.0.1-1_armel.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.15.1-4_all.deb) ...
-Setting up libgomp1:armel (4.7.1-5) ...
-Setting up libpipeline1:armel (1.2.1-1) ...
-Setting up libasprintf0c2:armel (0.18.1.1-9) ...
-Setting up libmagic1:armel (5.11-2) ...
-Setting up libpcre3:armel (1:8.30-5) ...
-Setting up libxml2:armel (2.8.0+dfsg1-4) ...
-Setting up libexpat1:armel (2.1.0-1) ...
-Setting up libfreetype6:armel (2.4.9-1) ...
+Unpacking r-base-dev (from .../r-base-dev_3.0.1~20130512-1_all.deb) ...
+Processing triggers for mime-support ...
+Processing triggers for install-info ...
+Setting up libpipeline1:armel (1.2.3-1) ...
+Setting up groff-base (1.22.2-2) ...
+Setting up man-db (2.6.3-6) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:armel (0.18.1.1-10) ...
+Setting up libmagic1:armel (1:5.14-1) ...
+Setting up libxml2:armel (2.8.0+dfsg1-7+nmu1) ...
+Setting up libexpat1:armel (2.1.0-3) ...
+Setting up libfreetype6:armel (2.4.9-1.1) ...
Setting up ucf (3.0025+nmu3) ...
-Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.9.0-6) ...
-Setting up libfontconfig1:armel (2.9.0-6) ...
-Setting up libpixman-1-0:armel (0.26.0-3) ...
-Setting up libpng12-0:armel (1.2.49-2) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:armel (2.9.0-7.1) ...
+Setting up libpixman-1-0:armel (0.26.0-4) ...
Setting up libxau6:armel (1:1.0.7-1) ...
Setting up libxdmcp6:armel (1:1.1.1-1) ...
-Setting up libxcb1:armel (1.8.1-1) ...
+Setting up libxcb1:armel (1.8.1-2) ...
Setting up libx11-data (2:1.5.0-1) ...
Setting up libx11-6:armel (2:1.5.0-1) ...
-Setting up libxcb-render0:armel (1.8.1-1) ...
-Setting up libxcb-shm0:armel (1.8.1-1) ...
+Setting up libxcb-render0:armel (1.8.1-2) ...
+Setting up libxcb-shm0:armel (1.8.1-2) ...
+Setting up libxext6:armel (2:1.3.1-2) ...
Setting up libxrender1:armel (1:0.9.7-1) ...
-Setting up libcairo2:armel (1.12.2-2) ...
-Setting up libffi5:armel (3.0.10-3) ...
-Setting up libglib2.0-0:armel (2.32.3-1) ...
+Setting up libcairo2:armel (1.12.14-4) ...
+Setting up libffi6:armel (3.0.13-4) ...
+Setting up libglib2.0-0:armel (2.36.1-2build1) ...
No schema files found: doing nothing.
-Setting up libcroco3:armel (0.6.5-1) ...
-Setting up libdatrie1:armel (0.2.5-3) ...
+Setting up libcroco3:armel (0.6.8-2) ...
+Setting up libdatrie1:armel (0.2.6-2) ...
Setting up libunistring0:armel (0.9.3-5) ...
-Setting up libgettextpo0:armel (0.18.1.1-9) ...
-Setting up libgfortran3:armel (4.7.1-5) ...
-Setting up x11-common (1:7.7+1) ...
+Setting up libgettextpo0:armel (0.18.1.1-10) ...
+Setting up libgfortran3:armel (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6:armel (2:1.0.8-2) ...
Setting up libjpeg8:armel (8d-1) ...
-Setting up libthai-data (0.1.18-1) ...
-Setting up libthai0:armel (0.1.18-1) ...
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:armel (0.1.19-2) ...
Setting up libxft2:armel (2.3.1-1) ...
-Setting up fontconfig (2.9.0-6) ...
-Cleaning up old fontconfig caches... done.
+Setting up fontconfig (2.9.0-7.1) ...
Regenerating fonts cache... done.
Setting up libpango1.0-0:armel (1.30.0-1) ...
Setting up libpaper1:armel (1.1.24+nmu2) ...
Creating config file /etc/papersize with new version
-Setting up libpcrecpp0:armel (1:8.30-5) ...
+Setting up libpcrecpp0:armel (1:8.31-2) ...
Setting up libsm6:armel (2:1.2.1-2) ...
Setting up libjbig0:armel (2.0-2) ...
-Setting up libtiff4:armel (3.9.6-6) ...
-Setting up libxext6:armel (2:1.3.1-2) ...
+Setting up libtiff5:armel (4.0.2-6) ...
Setting up libxss1:armel (1:1.2.2-1) ...
Setting up libxt6:armel (1:1.1.3-1) ...
-Setting up bsdmainutils (9.0.3) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
-Setting up groff-base (1.21-9) ...
-Setting up man-db (2.6.2-1) ...
-Building database of manual pages ...
-Setting up file (5.11-2) ...
-Setting up gettext-base (0.18.1.1-9) ...
-Setting up cdbs (0.4.116) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-9) ...
+Setting up libasprintf-dev:armel (0.18.1.1-10) ...
+Setting up libgettextpo-dev:armel (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120608) ...
-Setting up gfortran-4.6 (4.6.3-8) ...
-Setting up gfortran (4:4.6.3-7) ...
+Setting up debhelper (9.20130516) ...
+Setting up gfortran-4.6 (4.6.4-2) ...
+Setting up gfortran (4:4.6.3-8) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
Setting up libblas3 (1.2.20110419-5) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libblas-dev (1.2.20110419-5) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
-Setting up libbz2-dev:armel (1.0.6-3) ...
+Setting up libbz2-dev:armel (1.0.6-4) ...
Setting up libjpeg8-dev:armel (8d-1) ...
-Setting up liblapack3 (3.4.1-5) ...
+Setting up liblapack3 (3.4.2+dfsg-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
-Setting up liblapack-dev (3.4.1-5) ...
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
-Setting up libtinfo-dev:armel (5.9-10) ...
-Setting up libncurses5-dev (5.9-10) ...
+Setting up libtinfo-dev:armel (5.9+20130504-1) ...
+Setting up libncurses5-dev:armel (5.9+20130504-1) ...
Setting up libpaper-utils (1.1.24+nmu2) ...
-Setting up libpcre3-dev (1:8.30-5) ...
-Setting up zlib1g-dev:armel (1:1.2.7.dfsg-13) ...
-Setting up libpng12-dev (1.2.49-2) ...
-Setting up libreadline6-dev:armel (6.2-8) ...
-Setting up libreadline-dev:armel (6.2-8) ...
-Setting up zip (3.0-6) ...
-Setting up unzip (6.0-7) ...
-Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
+Setting up libpcre3-dev:armel (1:8.31-2) ...
+Setting up zlib1g-dev:armel (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:armel (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:armel (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
Setting up tcl8.5 (8.5.11-2) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
Setting up tk8.5 (8.5.11-2) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
-Setting up r-base-core (2.15.1-4) ...
-Setting R_PAPERSIZE_USER default to 'a4'
+Setting up r-base-core (3.0.1-1) ...
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.15.1-4) ...
+Setting up r-base-dev (3.0.1~20130512-1) ...
+Processing triggers for libc-bin ...
+ldconfig deferred processing now taking place
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
+The following packages were automatically installed and are no longer required:
+ libbogl0 libnewt0.52 libprocps0 mime-support
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 8 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32 armel (armv5tel)
-Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.7 g++-4.6_4.6.3-8 gcc-4.6_4.6.3-8 libc6-dev_2.13-34 libstdc++6_4.7.1-5 libstdc++6-4.6-dev_4.6.3-8 linux-libc-dev_3.2.21-2
-Package versions: apt_0.9.7.1 base-files_6.11 base-passwd_3.5.26 bash_4.2-3 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.1 build-essential_11.5 bzip2_1.0.6-3 cdbs_0.4.116 coreutils_8.13-3.2 cpp_4:4.6.3-7 cpp-4.6_4.6.3-8 dash_0.5.7-3 debconf_1.5.45 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.4 debianutils_4.3.2 diffutils_1:3.2-6 dpkg_1.16.7 dpkg-dev_1.16.7 e2fslibs_1.42.4-3 e2fsprogs_1.42.4-3 fakeroot_1.18.4-2 file_5.11-2 findutils_4.4.2-4 fontconfig_2.9.0-6 fontconfig-config_2.9.0-6 g++_4:4.6.3-7 g++-4.6_4.6.3-8 gcc_4:4.6.3-7 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-8 gcc-4.6-base_4.6.3-8 gcc-4.7-base_4.7.1-5 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gfortran_4:4.6.3-7 gfortran-4.6_4.6.3-8 gnupg_1.4.12-4+b1 gpgv_1.4.12-4+b1 grep_2.12-2 groff-base_1.21-9 gzip_1.5-1.1 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-28 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7.1 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-8 libblas-dev_1.2.20110419-5 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.1 libbz2-1.0_1.0.6-3 libbz2-dev_1.0.6-3 libc-bin_2.13-34 libc-dev-bin_2.13-34 libc6_2.13-34 libc6-dev_2.13-34 libcairo2_1.12.2-2 libclass-isa-perl_0.36-3 libcomerr2_1.42.4-3 libcroco3_0.6.5-1 libdatrie1_0.2.5-3 libdb5.1_5.1.29-5 libdpkg-perl_1.16.7 libexpat1_2.1.0-1 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-2 libfontconfig1_2.9.0-6 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.1-5 libgdbm3_1.8.3-11 libgettextpo0_0.18.1.1-9 libgfortran3_4.7.1-5 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.1-5 libice6_2:1.0.8-2 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.4.1-5 liblapack3_3.4.1-5 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20120614-1 libmagic1_5.11-2 libmount1_2.20.1-5.1 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-10 libncurses5-dev_5.9-10 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.30-5 libpcre3-dev_1:8.30-5 libpcrecpp0_1:8.30-5 libpipeline1_1.2.1-1 libpixman-1-0_0.26.0-3 libpng12-0_1.2.49-2 libpng12-dev_1.2.49-2 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libss2_1.42.4-3 libstdc++6_4.7.1-5 libstdc++6-4.6-dev_4.6.3-8 libswitch-perl_2.16-2 libthai-data_0.1.18-1 libthai0_0.1.18-1 libtiff4_3.9.6-6 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-10 libtinfo5_5.9-10 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.1 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-4 libxrender1_1:0.9.7-1 libxss1_1:1.2.2-1 libxt6_1:1.1.3-1 linux-libc-dev_3.2.21-2 login_1:4.1.5.1-1 lsb-base_4.1+Debian7 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5.1 multiarch-support_2.13-34 ncurses-base_5.9-10 ncurses-bin_5.9-10 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-12 perl-base_5.14.2-12 perl-modules_5.14.2-12 po-debconf_1.0.16+nmu2 r-base-core_2.15.1-4 r-base-dev_2.15.1-4 readline-common_6.2-8 sed_4.2.1-10 sensible-utils_0.0.7 sudo_1.8.5p2-1 sysv-rc_2.88dsf-28 sysvinit_2.88dsf-28 sysvinit-utils_2.88dsf-28 tar_1.26-4 tcl8.5_8.5.11-2 tk8.5_8.5.11-2 ttf-dejavu-core_2.33-2 tzdata_2012c-1 ucf_3.0025+nmu3 unzip_6.0-7 util-linux_2.20.1-5.1 x11-common_1:7.7+1 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20120614-1 zip_3.0-6 zlib1g_1:1.2.7.dfsg-13 zlib1g-dev_1:1.2.7.dfsg-13
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.6_4.6.4-2 gcc-4.6_4.6.4-2 libc6-dev_2.17-3 libstdc++6_4.8.0-7 libstdc++6-4.6-dev_4.6.4-2 linux-libc-dev_3.8.12-1
+Package versions: apex-nslu2_1.6.10 apt_0.9.8 apt-utils_0.9.8 base-files_7.2 base-passwd_3.5.26 bash_4.2+dfsg-1 bc_1.06.95-6 bf-utf-source_0.06 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.4 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.13-3.3 cpio_2.11+dfsg-0.1 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2 dash_0.5.7-3 dctrl-tools_2.23 debconf_1.5.50 debfoster_2.7-1.2 debhelper_9.20130516 debian-archive-keyring_2012.4 debiandoc-sgml_1.2.27 debianutils_4.3.4 devio_1.2-1+b1 diffutils_1:3.2-8 dns323-firmware-tools_0.3-2 docbook-xml_4.5-7.2 docbook-xsl_1.76.1+dfsg-1 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-1 findutils_4.4.2-5 fontconfig_2.9.0-7.1 fontconfig-config_2.9.0-7.1 fonts-dejavu-core_2.33+svn2514-3 g++_4:4.6.3-8 g++-4.6_4.6.4-2 gawk_1:4.0.1+dfsg-2.1 gcc_4:4.6.3-8 gcc-4.2-base_4.2.4-6 gcc-4.6_4.6.4-2 gcc-4.6-base_4.6.4-2 gcc-4.7-base_4.7.3-4 gcc-4.8-base_4.8.0-7 genext2fs_1.4.1-4 gettext_0.18.1.1-10 gettext-base_0.18.1.1-10 gfortran_4:4.6.3-8 gfortran-4.6_4.6.4-2 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.14-1 groff-base_1.22.2-2 gzip_1.5-1.1 hostname_3.12 html2text_1.3.2a-15 initscripts_2.88dsf-41 insserv_1.14.0-5 install-info_5.1.dfsg.1-3 intltool-debian_0.35.0+20060710.1 kmod_9-3 libacl1_2.2.51-8 libapt-inst1.5_0.9.8 libapt-pkg4.12_0.9.8 libasprintf-dev_0.18.1.1-10 libasprintf0c2_0.18.1.1-10 libattr1_1:2.4.46-8 libblas-dev_1.2.20110419-5 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.4 libbogl0_0.1.18-8+b1 libburn4_1.2.2-2 libbz2-1.0_1.0.6-4 libbz2-dev_1.0.6-4 libc-bin_2.17-2 libc-dev-bin_2.17-3 libc6_2.17-3 libc6-dev_2.17-3 libc6-pic_2.17-3 libcairo2_1.12.14-4 libcap2_1:2.22-1.2 libclass-isa-perl_0.36-5 libcomerr2_1.42.5-1.1 libcroco3_0.6.8-2 libdatrie1_0.2.6-2 libdb5.1_5.1.29-5 libdpkg-perl_1.16.10 libexpat1_2.1.0-3 libffi6_3.0.13-4 libfile-fcntllock-perl_0.14-2 libfontconfig1_2.9.0-7.1 libfreetype6_2.4.9-1.1 libgc1c2_1:7.1-9.1 libgcc1_1:4.8.0-7 libgcrypt11_1.5.0-5 libgdbm3_1.8.3-11 libgettextpo-dev_0.18.1.1-10 libgettextpo0_0.18.1.1-10 libgfortran3_4.8.0-7 libglib2.0-0_2.36.1-2build1 libgmp10_2:5.1.1+dfsg-3 libgnutls26_2.12.23-3 libgomp1_4.8.0-7 libgpg-error0_1.10-3.1 libgpm2_1.20.4-6 libhtml-parser-perl_3.71-1 libhtml-tagset-perl_3.20-2 libice6_2:1.0.8-2 libisoburn1_1.2.2-2 libisofs6_1.2.2-1 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 libjte1_1.19-1 libkmod2_9-3 liblapack-dev_3.4.2+dfsg-1 liblapack3_3.4.2+dfsg-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-1 libmount1_2.20.1-5.4 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libncurses5_5.9+20130504-1 libncurses5-dev_5.9+20130504-1 libncursesw5_5.9+20130504-1 libnewt0.52_0.52.15-1 libp11-kit0_0.12-3 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.31-2 libpcre3-dev_1:8.31-2 libpcrecpp0_1:8.31-2 libpipeline1_1.2.3-1 libpixman-1-0_0.26.0-4 libpng12-0_1.2.49-4 libpng12-dev_1.2.49-4 libprocps0_1:3.3.4-2 libprocps1_1:3.3.6-1 libreadline-dev_6.2+dfsg-0.1 libreadline5_5.2+dfsg-2 libreadline6_6.2+dfsg-0.1 libreadline6-dev_6.2+dfsg-0.1 libroman-perl_1.23-1 libruby1.8_1.8.7.358-7 libselinux1_2.1.13-1 libsemanage-common_2.1.10-1 libsemanage1_2.1.10-1 libsepol1_2.1.9-1 libsgmls-perl_1.03ii-32 libsigsegv2_2.9-4 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libsp1c2_1.3.4-1.2.1-47.1+b1 libss2_1.42.5-1.1 libssl1.0.0_1.0.1e-2 libstdc++6_4.8.0-7 libstdc++6-4.6-dev_4.6.4-2 libswitch-perl_2.16-2 libtasn1-6_3.3-1 libtext-format-perl_0.57-1 libtext-iconv-perl_1.7-5 libthai-data_0.1.19-2 libthai0_0.1.19-2 libtiff5_4.0.2-6 libtimedate-perl_1.2000-1 libtinfo-dev_5.9+20130504-1 libtinfo5_5.9+20130504-1 libunistring0_0.9.3-5 liburi-perl_1.60-1 libusb-0.1-4_2:0.1.12-23+nmu1 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.4 libvolume-id1_0.141-2 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-2 libxcb-shm0_1.8.1-2 libxcb1_1.8.1-2 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-7+nmu1 libxrender1_1:0.9.7-1 libxss1_1:1.2.2-1 libxt6_1:1.1.3-1 linux-libc-dev_3.8.12-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian10 make_3.81-8.2 man-db_2.6.3-6 mawk_1.3.3-17 mime-support_3.54 module-init-tools_9-3 mount_2.20.1-5.4 multiarch-support_2.17-2 ncurses-base_5.9+20130504-1 ncurses-bin_5.9+20130504-1 netbase_5.1 nullmailer_1:1.11-2 openssl_1.0.1e-2 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-21 perl-base_5.14.2-21 perl-modules_5.14.2-21 po-debconf_1.0.16+nmu2 procps_1:3.3.6-1 psmisc_22.20-1 r-base-core_3.0.1-1 r-base-dev_3.0.1~20130512-1 readline-common_6.2+dfsg-0.1 ruby1.8_1.8.7.358-7 sed_4.2.2-1 sensible-utils_0.0.7 sgml-base_1.26+nmu4 sgml-data_2.0.8 sgmlspl_1.03ii-32 slugimage_1:0.0+r104-5 sp_1.3.4-1.2.1-47.1+b1 sudo_1.8.5p2-1+nmu1 sysv-rc_2.88dsf-41 sysvinit_2.88dsf-41 sysvinit-utils_2.88dsf-41 tar_1.26+dfsg-5 tcl8.5_8.5.11-2 tk8.5_8.5.11-2 ttf-dejavu-core_2.33+svn2514-3 tzdata_2013b-2 u-boot-tools_2013.01.01-4 ucf_3.0025+nmu3 unzip_6.0-9 util-linux_2.20.1-5.4 x11-common_1:7.7+3 xdg-utils_1.1.0~rc1+git20111210-7 xml-core_0.13+nmu2 xorriso_1.2.2-2 xz-utils_5.1.1alpha+20120614-2 zip_3.0-7 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -578,12 +497,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Apr 12 02:45:32 2012 UTC using RSA key ID 2295D502
+gpgv: Signature made Thu May 16 14:46:42 2013 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.12.0~dfsg-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.12.0~dfsg
-dpkg-source: info: unpacking r-bioc-limma_3.12.0~dfsg.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.12.0~dfsg-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.16.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.16.3~dfsg
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg-1.debian.tar.gz
Check disc space
────────────────
@@ -593,27 +512,12 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.12.0~dfsg-1
- dpkg-source --before-build r-bioc-limma-3.12.0~dfsg
+dpkg-buildpackage: source version 3.16.3~dfsg-1
+ dpkg-source --before-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: host architecture armel
fakeroot debian/rules clean
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
-/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-armel-w418CV/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-armel-w418CV/r-bioc-limma-3.12.0~dfsg'
-if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "reverse-patches" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-for dir in debian/patches ; do \
- rm -f $dir/*.log ; \
- done
dh_clean
rm -f debian/r-bioc-limma.substvars
rm -f debian/r-bioc-limma.*.debhelper
@@ -634,26 +538,9 @@ if test -d src; then \
fi
rm -f config.log config.status
debian/rules build-arch
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
-/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-armel-w418CV/r-bioc-limma-3.12.0~dfsg'
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-armel-w418CV/r-bioc-limma-3.12.0~dfsg'
-if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-armel-w418CV/r-bioc-limma-3.12.0~dfsg'
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Nothing to be done for `update-config'.
fakeroot debian/rules binary-arch
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-armel-w418CV/r-bioc-limma-3.12.0~dfsg'
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
@@ -665,26 +552,26 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
install -d debian/r-bioc-limma/usr/lib/R/site-library
-echo "R:Depends=r-base-core (>= 2.15.1-4)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 3.0.1~20130512-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-armel-w418CV/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-armel-EePZrW/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-armel-w418CV/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-armel-EePZrW/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-armel-w418CV/r-bioc-limma-3.12.0~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-armel-EePZrW/r-bioc-limma-3.16.3~dfsg/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-armel-w418CV/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-armel-w418CV/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-armel-w418CV/r-bioc-limma-3.12.0~dfsg/src'
-installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-armel-w418CV/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-armel-EePZrW/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-armel-EePZrW/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-armel-EePZrW/r-bioc-limma-3.16.3~dfsg/src'
+installing to /build/buildd-r-bioc-limma_3.16.3~dfsg-1-armel-EePZrW/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -692,22 +579,27 @@ installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-armel-w418CV/r-bioc-limma
*** installing help indices
** building package indices
** installing vignettes
- 'limma.Rnw'
** testing if installed package can be loaded
-
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.12.0~dfsg-1-armel-w418CV/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-armel-w418CV/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-armel-w418CV/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.16.3~dfsg-1-armel-EePZrW/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-armel-EePZrW/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-armel-EePZrW/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.12.0~dfsg-1-armel-w418CV/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.16.3~dfsg-1-armel-EePZrW/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-armel-w418CV/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-armel-EePZrW/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/CITATION
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/doc/*
dh_installdocs -pr-bioc-limma
install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-limma_3.16.3~dfsg-1-armel-EePZrW/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/doc/r-bioc-limma \;
+ cp -a debian/README.test debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ chown -R 0:0 debian/r-bioc-limma/usr/share/doc
+ chmod -R go=rX debian/r-bioc-limma/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-limma/usr/share/doc
install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
@@ -739,9 +631,9 @@ dh_strip -pr-bioc-limma
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
cd debian/r-bioc-limma
- chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
- gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
- cd '/build/buildd-r-bioc-limma_3.12.0~dfsg-1-armel-w418CV/r-bioc-limma-3.12.0~dfsg'
+ chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save
+ gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save
+ cd '/build/buildd-r-bioc-limma_3.16.3~dfsg-1-armel-EePZrW/r-bioc-limma-3.16.3~dfsg'
dh_fixperms -pr-bioc-limma
find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -771,62 +663,79 @@ dh_md5sums -pr-bioc-limma
chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
dpkg-deb --build debian/r-bioc-limma ..
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.12.0~dfsg-1_armel.deb'.
- dpkg-genchanges -B -marmel Build Daemon (arnold) <buildd_armel-arnold at buildd.debian.org> >../r-bioc-limma_3.12.0~dfsg-1_armel.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.16.3~dfsg-1_armel.deb'.
+ dpkg-genchanges -B -marmel Build Daemon (ancina) <buildd_armel-ancina at buildd.debian.org> >../r-bioc-limma_3.16.3~dfsg-1_armel.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.12.0~dfsg
+ dpkg-source --after-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120720-1551
+Build finished at 20130517-1514
-r-bioc-limma_3.12.0~dfsg-1_armel.changes:
+r-bioc-limma_3.16.3~dfsg-1_armel.changes:
Format: 1.8
-Date: Thu, 12 Apr 2012 11:40:40 +0900
+Date: Thu, 16 May 2013 15:16:13 +0200
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: armel
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
Distribution: sid
Urgency: low
-Maintainer: armel Build Daemon (arnold) <buildd_armel-arnold at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Maintainer: armel Build Daemon (ancina) <buildd_armel-ancina at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.12.0~dfsg-1) unstable; urgency=low
+ r-bioc-limma (3.16.3~dfsg-1) unstable; urgency=low
.
[ Charles Plessy ]
- 2d3420e Imported Upstream version 3.12.0~dfsg
- 4bbb8e4 Document LIMMA's copyright as a whole.
+ ff8c6db Imported Upstream version 3.12.1~dfsg
+ b4f097e Effective license is GPL-2, without the '+', as R is GPL-2.
.
[ Andreas Tille ]
- 8a61a4c Obtain references from inst/CITATION
+ * Imported new upstream version 3.16.3~dfsg
+ * debian/control
+ - added myself to Uploaders
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - Fake normalisation as it is done by `cme fix dpkg-control`
+ (the command did actually no change - the control file was
+ brought into shape manually)
+ - Removed versioned dependency of r-base-dev
+ * debian/copyright:
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - checked new upstream version and bumped version number
+ - Add years to Copyright fields
+ * debian/rules: Remove executable flag from doc files
+ * debian/source/format: Add explicit source format specification
Checksums-Sha1:
- f8765b6fc5457721ba449b92cfa339e213c79eb6 808674 r-bioc-limma_3.12.0~dfsg-1_armel.deb
+ 49e089b392177b02aaf304ecd0db7d888bcb89a0 1618670 r-bioc-limma_3.16.3~dfsg-1_armel.deb
Checksums-Sha256:
- 7553769ca920039a1c17ac21555d082aad5389ed8e48ef50ed7596982070ea38 808674 r-bioc-limma_3.12.0~dfsg-1_armel.deb
+ c325a36ddbefeb0bdc7a6540321683dc2117b47b84df2083ce79f9fdd3dbe180 1618670 r-bioc-limma_3.16.3~dfsg-1_armel.deb
Files:
- bf4bc3e325418b76f5e66bc1adcefd85 808674 gnu-r optional r-bioc-limma_3.12.0~dfsg-1_armel.deb
+ bd1eff1b5a15e5221a3a5e1dc5b529db 1618670 gnu-r optional r-bioc-limma_3.16.3~dfsg-1_armel.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.12.0~dfsg-1_armel.deb
+r-bioc-limma_3.16.3~dfsg-1_armel.deb
────────────────────────────────────
new debian package, version 2.0.
- size 808674 bytes: control archive= 1537 bytes.
- 773 bytes, 16 lines control
- 2290 bytes, 30 lines md5sums
+ size 1618670 bytes: control archive= 1679 bytes.
+ 782 bytes, 16 lines control
+ 2621 bytes, 34 lines md5sums
Package: r-bioc-limma
- Version: 3.12.0~dfsg-1
+ Version: 3.16.3~dfsg-1
Architecture: armel
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 988
- Depends: libc6 (>= 2.4), r-base-core (>= 2.15.1-4)
+ Installed-Size: 1850
+ Depends: libc6 (>= 2.4), r-base-core (>= 3.0.1~20130512-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -838,51 +747,56 @@ r-bioc-limma_3.12.0~dfsg-1_armel.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2012-07-20 15:50 ./
-drwxr-xr-x root/root 0 2012-07-20 15:50 ./usr/
-drwxr-xr-x root/root 0 2012-07-20 15:49 ./usr/lib/
-drwxr-xr-x root/root 0 2012-07-20 15:49 ./usr/lib/R/
-drwxr-xr-x root/root 0 2012-07-20 15:50 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2012-07-20 15:50 ./usr/lib/R/site-library/limma/
--rwxr-xr-x root/root 1230 2012-07-20 15:50 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2012-07-20 15:50 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 13840 2012-07-20 15:50 ./usr/lib/R/site-library/limma/libs/limma.so
--rw-r--r-- root/root 972 2012-07-20 15:49 ./usr/lib/R/site-library/limma/DESCRIPTION
--rw-r--r-- root/root 1901 2012-07-20 15:49 ./usr/lib/R/site-library/limma/NAMESPACE
-drwxr-xr-x root/root 0 2012-07-20 15:50 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 2431 2012-07-20 15:50 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 3341 2012-07-20 15:50 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 472838 2012-07-20 15:50 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 1368 2012-07-20 15:50 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 6317 2012-07-20 15:50 ./usr/lib/R/site-library/limma/help/AnIndex
-drwxr-xr-x root/root 0 2012-07-20 15:50 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 91993 2012-07-20 15:50 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 1711 2012-07-20 15:50 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 42743 2012-07-20 15:50 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 673 2012-07-20 15:50 ./usr/lib/R/site-library/limma/doc/index.html
-drwxr-xr-x root/root 0 2012-07-20 15:50 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 383 2012-07-20 15:50 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 3824 2012-07-20 15:50 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 202286 2012-07-20 15:50 ./usr/lib/R/site-library/limma/R/limma.rdb
-drwxr-xr-x root/root 0 2012-07-20 15:50 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 35015 2012-07-20 15:50 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2012-07-20 15:50 ./usr/lib/R/site-library/limma/html/R.css
-drwxr-xr-x root/root 0 2012-07-20 15:50 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 220 2012-07-20 15:50 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 5729 2012-07-20 15:50 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 1061 2012-07-20 15:49 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 522 2012-07-20 15:50 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 6159 2012-07-20 15:50 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 2945 2012-07-20 15:50 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 3989 2012-07-20 15:50 ./usr/lib/R/site-library/limma/NEWS.Rd
--rw-r--r-- root/root 9754 2012-07-20 15:50 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2012-07-20 15:50 ./usr/share/
-drwxr-xr-x root/root 0 2012-07-20 15:50 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-07-20 15:50 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 683 2012-07-20 15:48 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 264 2012-07-20 15:48 ./usr/share/doc/r-bioc-limma/README.Debian
--rw-r--r-- root/root 2457 2012-07-20 15:48 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 27996 2012-03-30 22:32 ./usr/share/doc/r-bioc-limma/changelog.gz
+drwxr-xr-x root/root 0 2013-05-17 15:13 ./
+drwxr-xr-x root/root 0 2013-05-17 15:13 ./usr/
+drwxr-xr-x root/root 0 2013-05-17 15:13 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-17 15:13 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-17 15:13 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-17 15:13 ./usr/lib/R/site-library/limma/
+drwxr-xr-x root/root 0 2013-05-17 15:13 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 13840 2013-05-17 15:13 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2013-05-17 15:13 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 4120 2013-05-17 15:13 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 206552 2013-05-17 15:13 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 1056 2013-05-17 15:13 ./usr/lib/R/site-library/limma/R/limma
+drwxr-xr-x root/root 0 2013-05-17 15:13 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 3434 2013-05-17 15:13 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 2567 2013-05-17 15:13 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 6703 2013-05-17 15:13 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 494475 2013-05-17 15:13 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 1398 2013-05-17 15:13 ./usr/lib/R/site-library/limma/help/paths.rds
+drwxr-xr-x root/root 0 2013-05-17 15:13 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2013-05-17 15:13 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 37337 2013-05-17 15:13 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 10085 2013-05-17 15:13 ./usr/lib/R/site-library/limma/INDEX
+-rw-r--r-- root/root 963 2013-05-17 15:13 ./usr/lib/R/site-library/limma/CITATION
+-rw-r--r-- root/root 11214 2013-05-17 15:13 ./usr/lib/R/site-library/limma/NEWS.Rd
+-rw-r--r-- root/root 993 2013-05-17 15:13 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2013-05-17 15:13 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 673 2013-05-17 15:13 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 1711 2013-05-17 15:13 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 45597 2013-05-17 15:13 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 806089 2013-05-17 15:13 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 102936 2013-05-17 15:13 ./usr/lib/R/site-library/limma/doc/changelog.txt
+drwxr-xr-x root/root 0 2013-05-17 15:13 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 219 2013-05-17 15:13 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 3089 2013-05-17 15:13 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 541 2013-05-17 15:13 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 5944 2013-05-17 15:13 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 6375 2013-05-17 15:13 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 1072 2013-05-17 15:13 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 2046 2013-05-17 15:13 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2013-05-17 15:13 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-17 15:13 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-17 15:13 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 1153 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 31097 2013-05-02 00:02 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 264 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 2605 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 437 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.test
+drwxr-xr-x root/root 0 2013-05-17 15:13 ./usr/share/doc/r-bioc-limma/tests/
+-rw-r--r-- root/root 14649 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save.gz
+-rw-r--r-- root/root 2097 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.R.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -896,27 +810,187 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-armel-sbuild-ec4f22f2-722e-4e0a-a440-7d1c8f943d5a/build/buildd-r-bioc-limma_3.12.0~dfsg-1-armel-w418CV
-Not cleaning session: cloned chroot in use
+Purging /var/lib/schroot/mount/sid-armel-sbuild-2a73574f-6d9a-47f2-b6e5-b0088b40bd14/build/buildd-r-bioc-limma_3.16.3~dfsg-1-armel-EePZrW
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages were automatically installed and are no longer required:
+ libbogl0 libnewt0.52 libprocps0 mime-support
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 8 not upgraded.
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages were automatically installed and are no longer required:
+ libbogl0 libnewt0.52 libprocps0 mime-support
+Use 'apt-get autoremove' to remove them.
+The following packages will be REMOVED:
+ cdbs* debhelper* file* fontconfig* fontconfig-config* fonts-dejavu-core*
+ gettext* gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
+ intltool-debian* libasprintf-dev* libasprintf0c2* libblas-dev* libblas3*
+ libbz2-dev* libcairo2* libcroco3* libdatrie1* libexpat1* libffi6*
+ libfontconfig1* libfreetype6* libgettextpo-dev* libgettextpo0* libgfortran3*
+ libglib2.0-0* libice6* libjbig0* libjpeg8* libjpeg8-dev* liblapack-dev*
+ liblapack3* libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils*
+ libpaper1* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0*
+ libpng12-dev* libreadline-dev* libreadline6-dev* libsm6* libthai-data*
+ libthai0* libtiff5* libtinfo-dev* libunistring0* libx11-6* libx11-data*
+ libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2*
+ libxml2* libxrender1* libxss1* libxt6* man-db* po-debconf* r-base-core*
+ r-base-dev* tcl8.5* tk8.5* ttf-dejavu-core* ucf* unzip* x11-common*
+ xdg-utils* zip* zlib1g-dev*
+0 upgraded, 0 newly installed, 79 to remove and 8 not upgraded.
+After this operation, 119 MB disk space will be freed.
+(Reading database ... 18600 files and directories currently installed.)
+Removing r-base-dev ...
+Removing cdbs ...
+Removing debhelper ...
+Removing file ...
+Removing r-base-core ...
+Purging configuration files for r-base-core ...
+Removing libpango1.0-0:armel ...
+Purging configuration files for libpango1.0-0:armel ...
+Removing fontconfig ...
+Purging configuration files for fontconfig ...
+Removing tk8.5 ...
+Purging configuration files for tk8.5 ...
+Removing libxft2:armel ...
+Purging configuration files for libxft2:armel ...
+Removing libcairo2:armel ...
+Purging configuration files for libcairo2:armel ...
+Removing libfontconfig1:armel ...
+Purging configuration files for libfontconfig1:armel ...
+Removing fontconfig-config ...
+Purging configuration files for fontconfig-config ...
+Removing ttf-dejavu-core ...
+Removing fonts-dejavu-core ...
+Purging configuration files for fonts-dejavu-core ...
+Removing po-debconf ...
+Removing intltool-debian ...
+Removing gettext ...
+Removing gettext-base ...
+Removing gfortran ...
+Removing gfortran-4.6 ...
+Removing man-db ...
+Purging configuration files for man-db ...
+Removing groff-base ...
+Purging configuration files for groff-base ...
+Removing html2text ...
+Purging configuration files for html2text ...
+Removing libasprintf-dev:armel ...
+Removing libasprintf0c2:armel ...
+Removing liblapack-dev ...
+Removing libblas-dev ...
+Removing liblapack3 ...
+Removing libblas3 ...
+Removing libbz2-dev:armel ...
+Removing libcroco3:armel ...
+Purging configuration files for libcroco3:armel ...
+Removing libthai0:armel ...
+Purging configuration files for libthai0:armel ...
+Removing libdatrie1:armel ...
+Purging configuration files for libdatrie1:armel ...
+Removing libexpat1:armel ...
+Purging configuration files for libexpat1:armel ...
+Removing libglib2.0-0:armel ...
+Purging configuration files for libglib2.0-0:armel ...
+Removing libffi6:armel ...
+Purging configuration files for libffi6:armel ...
+Removing libfreetype6:armel ...
+Purging configuration files for libfreetype6:armel ...
+Removing libgettextpo-dev:armel ...
+Removing libgettextpo0:armel ...
+Removing libgfortran3:armel ...
+Purging configuration files for libgfortran3:armel ...
+Removing libxt6:armel ...
+Purging configuration files for libxt6:armel ...
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+Purging configuration files for libsm6:armel ...
+Removing libice6:armel ...
+Purging configuration files for libice6:armel ...
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+Purging configuration files for libtiff5:armel ...
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+Purging configuration files for libpcrecpp0:armel ...
+Removing libpipeline1:armel ...
+Purging configuration files for libpipeline1:armel ...
+Removing libpixman-1-0:armel ...
+Purging configuration files for libpixman-1-0:armel ...
+Removing libpng12-dev ...
+Removing libreadline-dev:armel ...
+Removing libreadline6-dev:armel ...
+Removing libthai-data ...
+Removing libtinfo-dev:armel ...
+Removing libunistring0:armel ...
+Purging configuration files for libunistring0:armel ...
+Removing libxss1:armel ...
+Purging configuration files for libxss1:armel ...
+Removing libxrender1:armel ...
+Purging configuration files for libxrender1:armel ...
+Removing libxext6:armel ...
+Purging configuration files for libxext6:armel ...
+Removing libx11-6:armel ...
+Purging configuration files for libx11-6:armel ...
+Removing libx11-data ...
+Removing libxcb-shm0:armel ...
+Purging configuration files for libxcb-shm0:armel ...
+Removing libxcb-render0:armel ...
+Purging configuration files for libxcb-render0:armel ...
+Removing libxcb1:armel ...
+Purging configuration files for libxcb1:armel ...
+Removing libxau6:armel ...
+Purging configuration files for libxau6:armel ...
+Removing libxdmcp6:armel ...
+Purging configuration files for libxdmcp6:armel ...
+Removing libxml2:armel ...
+Purging configuration files for libxml2:armel ...
+Removing tcl8.5 ...
+Purging configuration files for tcl8.5 ...
+Removing ucf ...
+Purging configuration files for ucf ...
+Removing unzip ...
+Purging configuration files for unzip ...
+Removing x11-common ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of stop.
+Purging configuration files for x11-common ...
+dpkg: warning: while removing x11-common, directory '/etc/X11' not empty so not removed
+Removing xdg-utils ...
+Removing zip ...
+Removing zlib1g-dev:armel ...
+Processing triggers for mime-support ...
+Processing triggers for libc-bin ...
+ldconfig deferred processing now taking place
+Processing triggers for install-info ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: armel
-Build-Space: 3276
-Build-Time: 133
+Build-Space: 5892
+Build-Time: 105
Distribution: sid
-Install-Time: 284
-Job: r-bioc-limma_3.12.0~dfsg-1
+Install-Time: 78
+Job: r-bioc-limma_3.16.3~dfsg-1
Package: r-bioc-limma
-Package-Time: 547
-Source-Version: 3.12.0~dfsg-1
-Space: 3276
+Package-Time: 231
+Source-Version: 3.16.3~dfsg-1
+Space: 5892
Status: successful
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120720-1551
-Build needed 00:09:07, 3276k disc space
-Signature with key '364BAAB7' requested:
-
+Finished at 20130517-1514
+Build needed 00:03:51, 5892k disc space
+Signature with key '06BDA360' requested:
diff --git a/armhf.log b/armhf.log
index f6bd334..f0cc1df 100644
--- a/armhf.log
+++ b/armhf.log
@@ -1,61 +1,64 @@
-From buildd at henze.debian.org Fri Jul 20 15:27:33 2012
-Return-path: <buildd at henze.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+From buildd at hasse.debian.org Thu May 16 15:44:56 2013
+Return-path: <buildd at hasse.debian.org>
+Received: from muffat.debian.org ([206.12.19.146])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
- by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at henze.debian.org>)
- id 1SsF77-00010D-3t
- for logs at buildd.debian.org; Fri, 20 Jul 2012 15:27:33 +0000
-Received: from [217.140.96.70] (helo=henze.debian.org)
+ CN=muffat.debian.org, EMAIL=hostmaster at muffat.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:DHE_RSA_AES_128_CBC_SHA1:16)
+ (Exim 4.72) (envelope-from <buildd at hasse.debian.org>)
+ id 1Ud0MR-0004aT-0c
+ for logs at buildd.debian.org; Thu, 16 May 2013 15:44:55 +0000
+Received: from [217.140.96.68] (helo=hasse.debian.org)
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=henze.debian.org, EMAIL=hostmaster at henze.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:DHE_RSA_AES_128_CBC_SHA1:16)
- (Exim 4.72) (envelope-from <buildd at henze.debian.org>)
- id 1SsF75-0001B9-V7
- for logs at buildd.debian.org; Fri, 20 Jul 2012 15:27:32 +0000
-Received: from buildd by henze.debian.org with local (Exim 4.80)
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- id 1SsF6y-0001er-9a; Fri, 20 Jul 2012 15:27:24 +0000
-From: buildd on henze <buildd at henze.debian.org>
-To: logs at buildd.debian.org,buildd-porters at henze.debian.org
-Subject: Log for successful build of r-bioc-limma_3.12.0~dfsg-1 on armhf
+ CN=hasse.debian.org, EMAIL=hostmaster at hasse.debian.org (verified)
+ by muffat.debian.org with esmtps (TLS1.2:DHE_RSA_AES_128_CBC_SHA1:128)
+ (Exim 4.80) (envelope-from <buildd at hasse.debian.org>)
+ id 1Ud0MN-0004Y4-NJ
+ for logs at buildd.debian.org; Thu, 16 May 2013 15:44:52 +0000
+Received: from buildd by hasse.debian.org with local (Exim 4.80)
+ (envelope-from <buildd at hasse.debian.org>)
+ id 1Ud0MH-0006Ts-5P; Thu, 16 May 2013 15:44:45 +0000
+From: buildd on hasse <buildd at hasse.debian.org>
+To: logs at buildd.debian.org,buildd-porters at hasse.debian.org
+Subject: Log for successful build of r-bioc-limma_3.16.3~dfsg-1 on armhf
(dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1SsF6y-0001er-9a at henze.debian.org>
-Date: Fri, 20 Jul 2012 15:27:24 +0000
+Message-Id: <E1Ud0MH-0006Ts-5P at hasse.debian.org>
+Date: Thu, 16 May 2013 15:44:45 +0000
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on henze.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on hasse.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.12.0~dfsg-1 (armhf) 20 Jul 2012 15:20 ║
+║ r-bioc-limma 3.16.3~dfsg-1 (armhf) 16 May 2013 15:37 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.12.0~dfsg-1
-Source Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
+Source Version: 3.16.3~dfsg-1
Architecture: armhf
-Get:1 http://ftp.uk.debian.org unstable InRelease [249 kB]
-Get:2 http://incoming.debian.org unstable InRelease [249 kB]
-Get:3 http://ftp.uk.debian.org unstable/main Sources [6339 kB]
-Ign http://incoming.debian.org InRelease
-Get:4 http://incoming.debian.org unstable/main Sources [6339 kB]
-Get:5 http://ftp.uk.debian.org unstable/contrib Sources [54.8 kB]
-Get:6 http://ftp.uk.debian.org unstable/non-free Sources [97.9 kB]
-Get:7 http://ftp.uk.debian.org unstable/main armhf Packages [5945 kB]
-Get:8 http://ftp.uk.debian.org unstable/contrib armhf Packages [36.4 kB]
-Get:9 http://incoming.debian.org unstable/contrib Sources [54.8 kB]
-Get:10 http://incoming.debian.org unstable/non-free Sources [97.9 kB]
-Get:11 http://incoming.debian.org unstable/main armhf Packages [5945 kB]
-Get:12 http://incoming.debian.org unstable/contrib armhf Packages [36.4 kB]
-Get:13 http://incoming.debian.org Release.gpg [836 B]
-Get:14 http://incoming.debian.org Release [1601 B]
-Get:15 http://incoming.debian.org Sources [15.1 kB]
-Get:16 http://incoming.debian.org Packages [155 kB]
-Fetched 25.6 MB in 1min 27s (293 kB/s)
+Get:1 http://ftp.uk.debian.org unstable Release.gpg [1571 B]
+Get:2 http://ftp.uk.debian.org unstable Release [203 kB]
+Get:3 http://incoming.debian.org unstable Release.gpg [1571 B]
+Get:4 http://incoming.debian.org buildd-unstable Release.gpg [1571 B]
+Get:5 http://ftp.uk.debian.org unstable/main Sources [6728 kB]
+Get:6 http://incoming.debian.org unstable Release [203 kB]
+Get:7 http://incoming.debian.org buildd-unstable Release [109 kB]
+Get:8 http://incoming.debian.org unstable/main Sources [6728 kB]
+Get:9 http://ftp.uk.debian.org unstable/contrib Sources [53.7 kB]
+Get:10 http://ftp.uk.debian.org unstable/non-free Sources [102 kB]
+Get:11 http://ftp.uk.debian.org unstable/main armhf Packages [6219 kB]
+Get:12 http://ftp.uk.debian.org unstable/contrib armhf Packages [36.2 kB]
+Get:13 http://incoming.debian.org unstable/contrib Sources [53.7 kB]
+Get:14 http://incoming.debian.org unstable/non-free Sources [102 kB]
+Get:15 http://incoming.debian.org unstable/main armhf Packages [6219 kB]
+Get:16 http://incoming.debian.org unstable/contrib armhf Packages [36.2 kB]
+Get:17 http://incoming.debian.org buildd-unstable/main Sources [119 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib Sources [2481 B]
+Get:19 http://incoming.debian.org buildd-unstable/non-free Sources [2167 B]
+Get:20 http://incoming.debian.org buildd-unstable/main armhf Packages [73.4 kB]
+Get:21 http://incoming.debian.org buildd-unstable/contrib armhf Packages [1481 B]
+Fetched 27.0 MB in 1min 28s (304 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -76,11 +79,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 288 kB of source archives.
-Get:1 http://ftp.uk.debian.org/debian/ unstable/main r-bioc-limma 3.12.0~dfsg-1 (dsc) [2030 B]
-Get:2 http://ftp.uk.debian.org/debian/ unstable/main r-bioc-limma 3.12.0~dfsg-1 (tar) [283 kB]
-Get:3 http://ftp.uk.debian.org/debian/ unstable/main r-bioc-limma 3.12.0~dfsg-1 (diff) [3098 B]
-Fetched 288 kB in 0s (842 kB/s)
+Need to get 1058 kB of source archives.
+Get:1 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-bioc-limma 3.16.3~dfsg-1 (dsc) [1409 B]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-bioc-limma 3.16.3~dfsg-1 (tar) [1052 kB]
+Get:3 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-bioc-limma 3.16.3~dfsg-1 (diff) [4167 B]
+Fetched 1058 kB in 2s (410 kB/s)
Download complete and in download only mode
Check arch
@@ -93,457 +96,551 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
-build-essential: already installed (11.5+b1)
+build-essential: already installed (11.6)
fakeroot: already installed (1.18.4-2)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 37 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 37 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev
Checking for already installed dependencies...
-libc6-dev: already installed (2.13-34)
-gcc: already installed (4:4.6.3-7 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-7 >= 4:4.4.3 is satisfied)
+base-files: already installed (7.1)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2+dfsg-1)
+bsdutils: already installed (1:2.20.1-5.3)
+coreutils: already installed (8.20-3)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1.1)
+findutils: already installed (4.4.2-5)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+libc-bin: already installed (2.13-38)
+login: already installed (1:4.1.5.1-1)
+mount: already installed (2.20.1-5.3)
+ncurses-base: already installed (5.9-10)
+ncurses-bin: already installed (5.9-10)
+perl-base: already installed (5.14.2-21)
+sed: already installed (4.2.1-10)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-5)
+util-linux: already installed (2.20.1-5.3)
+libc6-dev: already installed (2.13-38)
+gcc: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.7 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120608
+Using default version 9.20130509
cdbs: missing
r-base-dev: missing
-Using default version 2.15.1-4
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
+The following package was automatically installed and is no longer required:
+ libmpc2
+Use 'apt-get autoremove' to remove it.
The following extra packages will be installed:
- bsdmainutils file fontconfig fontconfig-config gcc-4.7-base gettext
- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
- libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3
- libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgcc1
- libgettextpo0 libgfortran3 libglib2.0-0 libgomp1 libice6 libjbig0 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libstdc++6 libthai-data libthai0 libtiff4
- libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
- libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
- libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
- x11-common xdg-utils zip zlib1g-dev
+ bsdmainutils cpp-4.6 file fontconfig fontconfig-config fonts-dejavu-core
+ g++-4.6 gcc-4.6 gcc-4.6-base gcc-4.8-base gettext gettext-base gfortran
+ gfortran-4.6 groff-base html2text intltool-debian libasprintf-dev
+ libasprintf0c2 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6 libc6-dev
+ libcairo2 libcroco3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6
+ libgettextpo-dev libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libmpc3 libncurses5
+ libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev
+ libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libstdc++6-4.6-dev libthai-data
+ libthai0 libtiff5 libtinfo-dev libtinfo5 libunistring0 libx11-6 libx11-data
+ libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
+ libxml2 libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf r-base-core
+ tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g
+ zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts dh-make gettext-doc
- gfortran-doc gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
- ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make
+ gcc-4.6-doc libstdc++6-4.6-dbg libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg
+ libquadmath-dbg libmudflap0-dbg libcloog-ppl0 libppl-c2 libppl7
+ binutils-gold gettext-doc gfortran-doc gfortran-4.6-doc libgfortran3-dbg
+ groff glibc-doc ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp
+ libstdc++6-4.6-doc less www-browser libmail-box-perl r-doc-info r-doc-pdf
r-mathlib r-base-html texlive-base texlive-latex-base
texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
texi2html tcl-tclreadline gvfs-bin
Recommended packages:
autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
- xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
+ libgpm2 xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
- bsdmainutils cdbs debhelper file fontconfig fontconfig-config gettext
- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
- libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3
- libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgettextpo0
+ bsdmainutils cdbs debhelper file fontconfig fontconfig-config
+ fonts-dejavu-core gcc-4.8-base gettext gettext-base gfortran gfortran-4.6
+ groff-base html2text intltool-debian libasprintf-dev libasprintf0c2
+ libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libffi6 libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0
libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev
- liblapack-dev liblapack3 libmagic1 libncurses5-dev libpango1.0-0
+ liblapack-dev liblapack3 libmagic1 libmpc3 libncurses5-dev libpango1.0-0
libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
- libsm6 libthai-data libthai0 libtiff4 libtinfo-dev libunistring0 libx11-6
+ libsm6 libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 libx11-6
libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
zlib1g-dev
The following packages will be upgraded:
- gcc-4.7-base libgcc1 libgomp1 libstdc++6
-4 upgraded, 79 newly installed, 0 to remove and 6 not upgraded.
-Need to get 54.4 MB of archives.
-After this operation, 102 MB of additional disk space will be used.
-Get:1 http://ftp.uk.debian.org/debian/ unstable/main libgomp1 armhf 4.7.1-5 [25.7 kB]
-Get:2 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.7-base armhf 4.7.1-5 [141 kB]
-Get:3 http://ftp.uk.debian.org/debian/ unstable/main libstdc++6 armhf 4.7.1-5 [279 kB]
-Get:4 http://ftp.uk.debian.org/debian/ unstable/main libgcc1 armhf 1:4.7.1-5 [52.5 kB]
-Get:5 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armhf 1.2.1-1 [33.2 kB]
-Get:6 http://ftp.uk.debian.org/debian/ unstable/main libasprintf0c2 armhf 0.18.1.1-9 [26.4 kB]
-Get:7 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armhf 5.11-2 [199 kB]
-Get:8 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armhf 1:8.30-5 [240 kB]
-Get:9 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armhf 2.8.0+dfsg1-4 [786 kB]
-Get:10 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 armhf 2.1.0-1 [109 kB]
-Get:11 http://ftp.uk.debian.org/debian/ unstable/main libfreetype6 armhf 2.4.9-1 [380 kB]
-Get:12 http://ftp.uk.debian.org/debian/ unstable/main ucf all 3.0025+nmu3 [70.8 kB]
-Get:13 http://ftp.uk.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:14 http://ftp.uk.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-6 [232 kB]
-Get:15 http://ftp.uk.debian.org/debian/ unstable/main libfontconfig1 armhf 2.9.0-6 [280 kB]
-Get:16 http://ftp.uk.debian.org/debian/ unstable/main libpixman-1-0 armhf 0.26.0-3 [405 kB]
-Get:17 http://ftp.uk.debian.org/debian/ unstable/main libpng12-0 armhf 1.2.49-2 [176 kB]
-Get:18 http://ftp.uk.debian.org/debian/ unstable/main libxau6 armhf 1:1.0.7-1 [17.3 kB]
-Get:19 http://ftp.uk.debian.org/debian/ unstable/main libxdmcp6 armhf 1:1.1.1-1 [25.0 kB]
-Get:20 http://ftp.uk.debian.org/debian/ unstable/main libxcb1 armhf 1.8.1-1 [41.4 kB]
-Get:21 http://ftp.uk.debian.org/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
-Get:22 http://ftp.uk.debian.org/debian/ unstable/main libx11-6 armhf 2:1.5.0-1 [815 kB]
-Get:23 http://ftp.uk.debian.org/debian/ unstable/main libxcb-render0 armhf 1.8.1-1 [16.0 kB]
-Get:24 http://ftp.uk.debian.org/debian/ unstable/main libxcb-shm0 armhf 1.8.1-1 [9642 B]
-Get:25 http://ftp.uk.debian.org/debian/ unstable/main libxrender1 armhf 1:0.9.7-1 [28.1 kB]
-Get:26 http://ftp.uk.debian.org/debian/ unstable/main libcairo2 armhf 1.12.2-2 [816 kB]
-Get:27 http://ftp.uk.debian.org/debian/ unstable/main libffi5 armhf 3.0.10-3+b1 [22.3 kB]
-Get:28 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armhf 2.32.3-1 [1896 kB]
-Get:29 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armhf 0.6.5-1 [134 kB]
-Get:30 http://ftp.uk.debian.org/debian/ unstable/main libdatrie1 armhf 0.2.5-3 [25.4 kB]
-Get:31 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armhf 0.9.3-5+b1 [404 kB]
-Get:32 http://ftp.uk.debian.org/debian/ unstable/main libgettextpo0 armhf 0.18.1.1-9 [122 kB]
-Get:33 http://ftp.uk.debian.org/debian/ unstable/main libgfortran3 armhf 4.7.1-5 [216 kB]
-Get:34 http://ftp.uk.debian.org/debian/ unstable/main x11-common all 1:7.7+1 [278 kB]
-Get:35 http://ftp.uk.debian.org/debian/ unstable/main libice6 armhf 2:1.0.8-2 [53.4 kB]
-Get:36 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8 armhf 8d-1 [121 kB]
-Get:37 http://ftp.uk.debian.org/debian/ unstable/main libthai-data all 0.1.18-1 [205 kB]
-Get:38 http://ftp.uk.debian.org/debian/ unstable/main libthai0 armhf 0.1.18-1 [41.5 kB]
-Get:39 http://ftp.uk.debian.org/debian/ unstable/main libxft2 armhf 2.3.1-1 [53.3 kB]
-Get:40 http://ftp.uk.debian.org/debian/ unstable/main fontconfig armhf 2.9.0-6 [349 kB]
-Get:41 http://ftp.uk.debian.org/debian/ unstable/main libpango1.0-0 armhf 1.30.0-1 [398 kB]
-Get:42 http://ftp.uk.debian.org/debian/ unstable/main libpaper1 armhf 1.1.24+nmu2 [20.8 kB]
-Get:43 http://ftp.uk.debian.org/debian/ unstable/main libpcrecpp0 armhf 1:8.30-5 [122 kB]
-Get:44 http://ftp.uk.debian.org/debian/ unstable/main libsm6 armhf 2:1.2.1-2 [31.2 kB]
-Get:45 http://ftp.uk.debian.org/debian/ unstable/main libjbig0 armhf 2.0-2 [29.2 kB]
-Get:46 http://ftp.uk.debian.org/debian/ unstable/main libtiff4 armhf 3.9.6-6 [178 kB]
-Get:47 http://ftp.uk.debian.org/debian/ unstable/main libxext6 armhf 2:1.3.1-2 [47.6 kB]
-Get:48 http://ftp.uk.debian.org/debian/ unstable/main libxss1 armhf 1:1.2.2-1 [16.3 kB]
-Get:49 http://ftp.uk.debian.org/debian/ unstable/main libxt6 armhf 1:1.1.3-1 [170 kB]
-Get:50 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armhf 9.0.3 [204 kB]
-Get:51 http://ftp.uk.debian.org/debian/ unstable/main groff-base armhf 1.21-9 [1031 kB]
-Get:52 http://ftp.uk.debian.org/debian/ unstable/main man-db armhf 2.6.2-1 [1014 kB]
-Get:53 http://ftp.uk.debian.org/debian/ unstable/main file armhf 5.11-2 [51.5 kB]
-Get:54 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armhf 0.18.1.1-9 [130 kB]
-Get:55 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.116 [79.9 kB]
-Get:56 http://ftp.uk.debian.org/debian/ unstable/main html2text armhf 1.3.2a-15+b1 [94.6 kB]
-Get:57 http://ftp.uk.debian.org/debian/ unstable/main gettext armhf 0.18.1.1-9 [1828 kB]
-Get:58 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:59 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:60 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 9.20120608 [700 kB]
-Get:61 http://ftp.uk.debian.org/debian/ unstable/main gfortran-4.6 armhf 4.6.3-8 [4603 kB]
-Get:62 http://ftp.uk.debian.org/debian/ unstable/main gfortran armhf 4:4.6.3-7 [1124 B]
-Get:63 http://ftp.uk.debian.org/debian/ unstable/main libblas3 armhf 1.2.20110419-5 [191 kB]
-Get:64 http://ftp.uk.debian.org/debian/ unstable/main libblas-dev armhf 1.2.20110419-5 [195 kB]
-Get:65 http://ftp.uk.debian.org/debian/ unstable/main libbz2-dev armhf 1.0.6-3 [32.7 kB]
-Get:66 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8-dev armhf 8d-1 [226 kB]
-Get:67 http://ftp.uk.debian.org/debian/ unstable/main liblapack3 armhf 3.4.1-5 [3350 kB]
-Get:68 http://ftp.uk.debian.org/debian/ unstable/main liblapack-dev armhf 3.4.1-5 [3624 kB]
-Get:69 http://ftp.uk.debian.org/debian/ unstable/main libtinfo-dev armhf 5.9-10 [83.9 kB]
-Get:70 http://ftp.uk.debian.org/debian/ unstable/main libncurses5-dev armhf 5.9-10 [194 kB]
-Get:71 http://ftp.uk.debian.org/debian/ unstable/main libpaper-utils armhf 1.1.24+nmu2 [17.8 kB]
-Get:72 http://ftp.uk.debian.org/debian/ unstable/main libpcre3-dev armhf 1:8.30-5 [342 kB]
-Get:73 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armhf 1:1.2.7.dfsg-13 [209 kB]
-Get:74 http://ftp.uk.debian.org/debian/ unstable/main libpng12-dev armhf 1.2.49-2 [256 kB]
-Get:75 http://ftp.uk.debian.org/debian/ unstable/main libreadline6-dev armhf 6.2-8+b1 [229 kB]
-Get:76 http://ftp.uk.debian.org/debian/ unstable/main libreadline-dev armhf 6.2-8+b1 [898 B]
-Get:77 http://ftp.uk.debian.org/debian/ unstable/main zip armhf 3.0-6 [319 kB]
-Get:78 http://ftp.uk.debian.org/debian/ unstable/main unzip armhf 6.0-7 [186 kB]
-Get:79 http://ftp.uk.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB]
-Get:80 http://ftp.uk.debian.org/debian/ unstable/main tcl8.5 armhf 8.5.11-2 [1538 kB]
-Get:81 http://ftp.uk.debian.org/debian/ unstable/main tk8.5 armhf 8.5.11-2 [1084 kB]
-Get:82 http://ftp.uk.debian.org/debian/ unstable/main r-base-core armhf 2.15.1-4 [20.4 MB]
-Get:83 http://ftp.uk.debian.org/debian/ unstable/main r-base-dev all 2.15.1-4 [3882 B]
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libc-dev-bin libc6 libc6-dev
+ libncurses5 libstdc++6-4.6-dev libtinfo5 ncurses-bin zlib1g
+12 upgraded, 84 newly installed, 0 to remove and 25 not upgraded.
+Need to get 76.4 MB of archives.
+After this operation, 103 MB of additional disk space will be used.
+Get:1 http://ftp.uk.debian.org/debian/ unstable/main libc6-dev armhf 2.17-2 [2367 kB]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-base-core armhf 3.0.1-1 [21.2 MB]
+Get:3 http://ftp.uk.debian.org/debian/ unstable/main libc-dev-bin armhf 2.17-2 [226 kB]
+Get:4 http://ftp.uk.debian.org/debian/ unstable/main libc6 armhf 2.17-2 [4020 kB]
+Get:5 http://ftp.uk.debian.org/debian/ unstable/main libtinfo5 armhf 5.9+20130504-1 [279 kB]
+Get:6 http://ftp.uk.debian.org/debian/ unstable/main libncurses5 armhf 5.9+20130504-1 [88.6 kB]
+Get:7 http://ftp.uk.debian.org/debian/ unstable/main ncurses-bin armhf 5.9+20130504-1 [353 kB]
+Get:8 http://ftp.uk.debian.org/debian/ unstable/main zlib1g armhf 1:1.2.8.dfsg-1 [85.3 kB]
+Get:9 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armhf 1.2.3-1 [34.2 kB]
+Get:10 http://ftp.uk.debian.org/debian/ unstable/main groff-base armhf 1.22.2-2 [679 kB]
+Get:11 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armhf 9.0.5 [204 kB]
+Get:12 http://ftp.uk.debian.org/debian/ unstable/main man-db armhf 2.6.3-6 [869 kB]
+Get:13 http://ftp.uk.debian.org/debian/ unstable/main libasprintf0c2 armhf 0.18.1.1-10 [26.8 kB]
+Get:14 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armhf 1:5.14-1 [213 kB]
+Get:15 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armhf 1:8.31-2 [246 kB]
+Get:16 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armhf 2.8.0+dfsg1-7+nmu1 [785 kB]
+Get:17 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 armhf 2.1.0-3 [109 kB]
+Get:18 http://ftp.uk.debian.org/debian/ unstable/main libfreetype6 armhf 2.4.9-1.1 [380 kB]
+Get:19 http://ftp.uk.debian.org/debian/ unstable/main ucf all 3.0025+nmu3 [70.8 kB]
+Get:20 http://ftp.uk.debian.org/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
+Get:21 http://ftp.uk.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
+Get:22 http://ftp.uk.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:23 http://ftp.uk.debian.org/debian/ unstable/main libfontconfig1 armhf 2.9.0-7.1 [280 kB]
+Get:24 http://ftp.uk.debian.org/debian/ unstable/main libpixman-1-0 armhf 0.26.0-4 [405 kB]
+Get:25 http://ftp.uk.debian.org/debian/ unstable/main libpng12-0 armhf 1.2.49-4 [176 kB]
+Get:26 http://ftp.uk.debian.org/debian/ unstable/main libxau6 armhf 1:1.0.7-1 [17.3 kB]
+Get:27 http://ftp.uk.debian.org/debian/ unstable/main libxdmcp6 armhf 1:1.1.1-1 [25.0 kB]
+Get:28 http://ftp.uk.debian.org/debian/ unstable/main libxcb1 armhf 1.8.1-2 [41.6 kB]
+Get:29 http://ftp.uk.debian.org/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:30 http://ftp.uk.debian.org/debian/ unstable/main libx11-6 armhf 2:1.5.0-1 [815 kB]
+Get:31 http://ftp.uk.debian.org/debian/ unstable/main libxcb-render0 armhf 1.8.1-2 [16.2 kB]
+Get:32 http://ftp.uk.debian.org/debian/ unstable/main libxcb-shm0 armhf 1.8.1-2 [9842 B]
+Get:33 http://ftp.uk.debian.org/debian/ unstable/main libxext6 armhf 2:1.3.1-2 [47.6 kB]
+Get:34 http://ftp.uk.debian.org/debian/ unstable/main libxrender1 armhf 1:0.9.7-1 [28.1 kB]
+Get:35 http://ftp.uk.debian.org/debian/ unstable/main libcairo2 armhf 1.12.14-4 [906 kB]
+Get:36 http://ftp.uk.debian.org/debian/ unstable/main libffi6 armhf 3.0.13-4 [18.8 kB]
+Get:37 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armhf 2.36.1-2build1 [1917 kB]
+Get:38 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armhf 0.6.6-2 [120 kB]
+Get:39 http://ftp.uk.debian.org/debian/ unstable/main libdatrie1 armhf 0.2.6-2 [26.9 kB]
+Get:40 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armhf 0.9.3-5+b1 [404 kB]
+Get:41 http://ftp.uk.debian.org/debian/ unstable/main libgettextpo0 armhf 0.18.1.1-10 [123 kB]
+Get:42 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.8-base armhf 4.8.0-7 [148 kB]
+Get:43 http://ftp.uk.debian.org/debian/ unstable/main libgfortran3 armhf 4.8.0-7 [210 kB]
+Get:44 http://ftp.uk.debian.org/debian/ unstable/main x11-common all 1:7.7+3 [284 kB]
+Get:45 http://ftp.uk.debian.org/debian/ unstable/main libice6 armhf 2:1.0.8-2 [53.4 kB]
+Get:46 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8 armhf 8d-1 [121 kB]
+Get:47 http://ftp.uk.debian.org/debian/ unstable/main libthai-data all 0.1.19-2 [156 kB]
+Get:48 http://ftp.uk.debian.org/debian/ unstable/main libthai0 armhf 0.1.19-2 [40.5 kB]
+Get:49 http://ftp.uk.debian.org/debian/ unstable/main libxft2 armhf 2.3.1-1 [53.3 kB]
+Get:50 http://ftp.uk.debian.org/debian/ unstable/main fontconfig armhf 2.9.0-7.1 [349 kB]
+Get:51 http://ftp.uk.debian.org/debian/ unstable/main libpango1.0-0 armhf 1.30.0-1 [398 kB]
+Get:52 http://ftp.uk.debian.org/debian/ unstable/main libpaper1 armhf 1.1.24+nmu2 [20.8 kB]
+Get:53 http://ftp.uk.debian.org/debian/ unstable/main libpcrecpp0 armhf 1:8.31-2 [125 kB]
+Get:54 http://ftp.uk.debian.org/debian/ unstable/main libsm6 armhf 2:1.2.1-2 [31.2 kB]
+Get:55 http://ftp.uk.debian.org/debian/ unstable/main libjbig0 armhf 2.0-2 [29.2 kB]
+Get:56 http://ftp.uk.debian.org/debian/ unstable/main libtiff5 armhf 4.0.2-6 [215 kB]
+Get:57 http://ftp.uk.debian.org/debian/ unstable/main libxss1 armhf 1:1.2.2-1 [16.3 kB]
+Get:58 http://ftp.uk.debian.org/debian/ unstable/main libxt6 armhf 1:1.1.3-1 [170 kB]
+Get:59 http://ftp.uk.debian.org/debian/ unstable/main libmpc3 armhf 1.0.1-1 [35.6 kB]
+Get:60 http://ftp.uk.debian.org/debian/ unstable/main file armhf 1:5.14-1 [53.8 kB]
+Get:61 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armhf 0.18.1.1-10 [129 kB]
+Get:62 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.121 [80.5 kB]
+Get:63 http://ftp.uk.debian.org/debian/ unstable/main libstdc++6-4.6-dev armhf 4.6.4-2 [1672 kB]
+Get:64 http://ftp.uk.debian.org/debian/ unstable/main g++-4.6 armhf 4.6.4-2 [4888 kB]
+Get:65 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6 armhf 4.6.4-2 [4225 kB]
+Get:66 http://ftp.uk.debian.org/debian/ unstable/main cpp-4.6 armhf 4.6.4-2 [3993 kB]
+Get:67 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6-base armhf 4.6.4-2 [143 kB]
+Get:68 http://ftp.uk.debian.org/debian/ unstable/main html2text armhf 1.3.2a-15+b1 [94.6 kB]
+Get:69 http://ftp.uk.debian.org/debian/ unstable/main libasprintf-dev armhf 0.18.1.1-10 [27.1 kB]
+Get:70 http://ftp.uk.debian.org/debian/ unstable/main libgettextpo-dev armhf 0.18.1.1-10 [143 kB]
+Get:71 http://ftp.uk.debian.org/debian/ unstable/main gettext armhf 0.18.1.1-10 [1706 kB]
+Get:72 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:73 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:74 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 9.20130509 [707 kB]
+Get:75 http://ftp.uk.debian.org/debian/ unstable/main gfortran-4.6 armhf 4.6.4-2 [4539 kB]
+Get:76 http://ftp.uk.debian.org/debian/ unstable/main gfortran armhf 4:4.6.3-8 [1128 B]
+Get:77 http://ftp.uk.debian.org/debian/ unstable/main libblas3 armhf 1.2.20110419-5 [191 kB]
+Get:78 http://ftp.uk.debian.org/debian/ unstable/main libblas-dev armhf 1.2.20110419-5 [195 kB]
+Get:79 http://ftp.uk.debian.org/debian/ unstable/main libbz2-dev armhf 1.0.6-4 [32.7 kB]
+Get:80 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8-dev armhf 8d-1 [226 kB]
+Get:81 http://ftp.uk.debian.org/debian/ unstable/main liblapack3 armhf 3.4.2+dfsg-1 [3390 kB]
+Get:82 http://ftp.uk.debian.org/debian/ unstable/main liblapack-dev armhf 3.4.2+dfsg-1 [3661 kB]
+Get:83 http://ftp.uk.debian.org/debian/ unstable/main libtinfo-dev armhf 5.9+20130504-1 [86.6 kB]
+Get:84 http://ftp.uk.debian.org/debian/ unstable/main libncurses5-dev armhf 5.9+20130504-1 [194 kB]
+Get:85 http://ftp.uk.debian.org/debian/ unstable/main libpaper-utils armhf 1.1.24+nmu2 [17.8 kB]
+Get:86 http://ftp.uk.debian.org/debian/ unstable/main libpcre3-dev armhf 1:8.31-2 [348 kB]
+Get:87 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armhf 1:1.2.8.dfsg-1 [209 kB]
+Get:88 http://ftp.uk.debian.org/debian/ unstable/main libpng12-dev armhf 1.2.49-4 [256 kB]
+Get:89 http://ftp.uk.debian.org/debian/ unstable/main libreadline6-dev armhf 6.2+dfsg-0.1 [158 kB]
+Get:90 http://ftp.uk.debian.org/debian/ unstable/main libreadline-dev armhf 6.2+dfsg-0.1 [896 B]
+Get:91 http://ftp.uk.debian.org/debian/ unstable/main zip armhf 3.0-7 [319 kB]
+Get:92 http://ftp.uk.debian.org/debian/ unstable/main unzip armhf 6.0-9 [186 kB]
+Get:93 http://ftp.uk.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:94 http://ftp.uk.debian.org/debian/ unstable/main tcl8.5 armhf 8.5.11-2 [1538 kB]
+Get:95 http://ftp.uk.debian.org/debian/ unstable/main tk8.5 armhf 8.5.11-2 [1084 kB]
+Get:96 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-base-dev all 3.0.1-1 [3896 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 54.4 MB in 24s (2182 kB/s)
-(Reading database ... 10766 files and directories currently installed.)
-Preparing to replace libgomp1:armhf 4.7.1-3 (using .../libgomp1_4.7.1-5_armhf.deb) ...
-Unpacking replacement libgomp1:armhf ...
-Preparing to replace gcc-4.7-base:armhf 4.7.1-3 (using .../gcc-4.7-base_4.7.1-5_armhf.deb) ...
-Unpacking replacement gcc-4.7-base:armhf ...
-Setting up gcc-4.7-base:armhf (4.7.1-5) ...
-(Reading database ... 10766 files and directories currently installed.)
-Preparing to replace libstdc++6:armhf 4.7.1-3 (using .../libstdc++6_4.7.1-5_armhf.deb) ...
-Unpacking replacement libstdc++6:armhf ...
-Setting up libstdc++6:armhf (4.7.1-5) ...
-(Reading database ... 10766 files and directories currently installed.)
-Preparing to replace libgcc1:armhf 1:4.7.1-3 (using .../libgcc1_1%3a4.7.1-5_armhf.deb) ...
-Unpacking replacement libgcc1:armhf ...
-Setting up libgcc1:armhf (1:4.7.1-5) ...
+Fetched 76.4 MB in 38s (1978 kB/s)
+(Reading database ... 12878 files and directories currently installed.)
+Preparing to replace libc6-dev:armhf 2.13-38 (using .../libc6-dev_2.17-2_armhf.deb) ...
+Unpacking replacement libc6-dev:armhf ...
+Preparing to replace libc-dev-bin 2.13-38 (using .../libc-dev-bin_2.17-2_armhf.deb) ...
+Unpacking replacement libc-dev-bin ...
+Preparing to replace libc6:armhf 2.13-38 (using .../libc6_2.17-2_armhf.deb) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Unpacking replacement libc6:armhf ...
+Setting up libc6:armhf (2.17-2) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Nothing to restart.
+(Reading database ... 12901 files and directories currently installed.)
+Preparing to replace libtinfo5:armhf 5.9-10 (using .../libtinfo5_5.9+20130504-1_armhf.deb) ...
+Unpacking replacement libtinfo5:armhf ...
+Setting up libtinfo5:armhf (5.9+20130504-1) ...
+(Reading database ... 12901 files and directories currently installed.)
+Preparing to replace libncurses5:armhf 5.9-10 (using .../libncurses5_5.9+20130504-1_armhf.deb) ...
+Unpacking replacement libncurses5:armhf ...
+Setting up libncurses5:armhf (5.9+20130504-1) ...
+(Reading database ... 12901 files and directories currently installed.)
+Preparing to replace ncurses-bin 5.9-10 (using .../ncurses-bin_5.9+20130504-1_armhf.deb) ...
+Unpacking replacement ncurses-bin ...
+Setting up ncurses-bin (5.9+20130504-1) ...
+(Reading database ... 12899 files and directories currently installed.)
+Preparing to replace zlib1g:armhf 1:1.2.7.dfsg-13 (using .../zlib1g_1%3a1.2.8.dfsg-1_armhf.deb) ...
+Unpacking replacement zlib1g:armhf ...
+Setting up zlib1g:armhf (1:1.2.8.dfsg-1) ...
Selecting previously unselected package libpipeline1:armhf.
-(Reading database ... 10766 files and directories currently installed.)
-Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ...
+(Reading database ... 12899 files and directories currently installed.)
+Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.3-1_armhf.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.22.2-2_armhf.deb) ...
+Selecting previously unselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_armhf.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.3-6_armhf.deb) ...
Selecting previously unselected package libasprintf0c2:armhf.
-Unpacking libasprintf0c2:armhf (from .../libasprintf0c2_0.18.1.1-9_armhf.deb) ...
+Unpacking libasprintf0c2:armhf (from .../libasprintf0c2_0.18.1.1-10_armhf.deb) ...
Selecting previously unselected package libmagic1:armhf.
-Unpacking libmagic1:armhf (from .../libmagic1_5.11-2_armhf.deb) ...
+Unpacking libmagic1:armhf (from .../libmagic1_1%3a5.14-1_armhf.deb) ...
Selecting previously unselected package libpcre3:armhf.
-Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-5_armhf.deb) ...
+Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.31-2_armhf.deb) ...
Selecting previously unselected package libxml2:armhf.
-Unpacking libxml2:armhf (from .../libxml2_2.8.0+dfsg1-4_armhf.deb) ...
+Unpacking libxml2:armhf (from .../libxml2_2.8.0+dfsg1-7+nmu1_armhf.deb) ...
Selecting previously unselected package libexpat1:armhf.
-Unpacking libexpat1:armhf (from .../libexpat1_2.1.0-1_armhf.deb) ...
+Unpacking libexpat1:armhf (from .../libexpat1_2.1.0-3_armhf.deb) ...
Selecting previously unselected package libfreetype6:armhf.
-Unpacking libfreetype6:armhf (from .../libfreetype6_2.4.9-1_armhf.deb) ...
+Unpacking libfreetype6:armhf (from .../libfreetype6_2.4.9-1.1_armhf.deb) ...
Selecting previously unselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ...
Moving old data out of the way
+Selecting previously unselected package fonts-dejavu-core.
+Unpacking fonts-dejavu-core (from .../fonts-dejavu-core_2.33+svn2514-3_all.deb) ...
Selecting previously unselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33+svn2514-3_all.deb) ...
Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-6_all.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ...
Selecting previously unselected package libfontconfig1:armhf.
-Unpacking libfontconfig1:armhf (from .../libfontconfig1_2.9.0-6_armhf.deb) ...
+Unpacking libfontconfig1:armhf (from .../libfontconfig1_2.9.0-7.1_armhf.deb) ...
Selecting previously unselected package libpixman-1-0:armhf.
-Unpacking libpixman-1-0:armhf (from .../libpixman-1-0_0.26.0-3_armhf.deb) ...
+Unpacking libpixman-1-0:armhf (from .../libpixman-1-0_0.26.0-4_armhf.deb) ...
Selecting previously unselected package libpng12-0:armhf.
-Unpacking libpng12-0:armhf (from .../libpng12-0_1.2.49-2_armhf.deb) ...
+Unpacking libpng12-0:armhf (from .../libpng12-0_1.2.49-4_armhf.deb) ...
Selecting previously unselected package libxau6:armhf.
Unpacking libxau6:armhf (from .../libxau6_1%3a1.0.7-1_armhf.deb) ...
Selecting previously unselected package libxdmcp6:armhf.
Unpacking libxdmcp6:armhf (from .../libxdmcp6_1%3a1.1.1-1_armhf.deb) ...
Selecting previously unselected package libxcb1:armhf.
-Unpacking libxcb1:armhf (from .../libxcb1_1.8.1-1_armhf.deb) ...
+Unpacking libxcb1:armhf (from .../libxcb1_1.8.1-2_armhf.deb) ...
Selecting previously unselected package libx11-data.
Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ...
Selecting previously unselected package libx11-6:armhf.
Unpacking libx11-6:armhf (from .../libx11-6_2%3a1.5.0-1_armhf.deb) ...
Selecting previously unselected package libxcb-render0:armhf.
-Unpacking libxcb-render0:armhf (from .../libxcb-render0_1.8.1-1_armhf.deb) ...
+Unpacking libxcb-render0:armhf (from .../libxcb-render0_1.8.1-2_armhf.deb) ...
Selecting previously unselected package libxcb-shm0:armhf.
-Unpacking libxcb-shm0:armhf (from .../libxcb-shm0_1.8.1-1_armhf.deb) ...
+Unpacking libxcb-shm0:armhf (from .../libxcb-shm0_1.8.1-2_armhf.deb) ...
+Selecting previously unselected package libxext6:armhf.
+Unpacking libxext6:armhf (from .../libxext6_2%3a1.3.1-2_armhf.deb) ...
Selecting previously unselected package libxrender1:armhf.
Unpacking libxrender1:armhf (from .../libxrender1_1%3a0.9.7-1_armhf.deb) ...
Selecting previously unselected package libcairo2:armhf.
-Unpacking libcairo2:armhf (from .../libcairo2_1.12.2-2_armhf.deb) ...
-Selecting previously unselected package libffi5:armhf.
-Unpacking libffi5:armhf (from .../libffi5_3.0.10-3+b1_armhf.deb) ...
+Unpacking libcairo2:armhf (from .../libcairo2_1.12.14-4_armhf.deb) ...
+Selecting previously unselected package libffi6:armhf.
+Unpacking libffi6:armhf (from .../libffi6_3.0.13-4_armhf.deb) ...
Selecting previously unselected package libglib2.0-0:armhf.
-Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.32.3-1_armhf.deb) ...
+Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.36.1-2build1_armhf.deb) ...
Selecting previously unselected package libcroco3:armhf.
-Unpacking libcroco3:armhf (from .../libcroco3_0.6.5-1_armhf.deb) ...
+Unpacking libcroco3:armhf (from .../libcroco3_0.6.6-2_armhf.deb) ...
Selecting previously unselected package libdatrie1:armhf.
-Unpacking libdatrie1:armhf (from .../libdatrie1_0.2.5-3_armhf.deb) ...
+Unpacking libdatrie1:armhf (from .../libdatrie1_0.2.6-2_armhf.deb) ...
Selecting previously unselected package libunistring0:armhf.
Unpacking libunistring0:armhf (from .../libunistring0_0.9.3-5+b1_armhf.deb) ...
Selecting previously unselected package libgettextpo0:armhf.
-Unpacking libgettextpo0:armhf (from .../libgettextpo0_0.18.1.1-9_armhf.deb) ...
+Unpacking libgettextpo0:armhf (from .../libgettextpo0_0.18.1.1-10_armhf.deb) ...
+Selecting previously unselected package gcc-4.8-base:armhf.
+Unpacking gcc-4.8-base:armhf (from .../gcc-4.8-base_4.8.0-7_armhf.deb) ...
Selecting previously unselected package libgfortran3:armhf.
-Unpacking libgfortran3:armhf (from .../libgfortran3_4.7.1-5_armhf.deb) ...
+Unpacking libgfortran3:armhf (from .../libgfortran3_4.8.0-7_armhf.deb) ...
Selecting previously unselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.7+1_all.deb) ...
+Unpacking x11-common (from .../x11-common_1%3a7.7+3_all.deb) ...
Selecting previously unselected package libice6:armhf.
Unpacking libice6:armhf (from .../libice6_2%3a1.0.8-2_armhf.deb) ...
Selecting previously unselected package libjpeg8:armhf.
Unpacking libjpeg8:armhf (from .../libjpeg8_8d-1_armhf.deb) ...
Selecting previously unselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.18-1_all.deb) ...
+Unpacking libthai-data (from .../libthai-data_0.1.19-2_all.deb) ...
Selecting previously unselected package libthai0:armhf.
-Unpacking libthai0:armhf (from .../libthai0_0.1.18-1_armhf.deb) ...
+Unpacking libthai0:armhf (from .../libthai0_0.1.19-2_armhf.deb) ...
Selecting previously unselected package libxft2:armhf.
Unpacking libxft2:armhf (from .../libxft2_2.3.1-1_armhf.deb) ...
Selecting previously unselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.9.0-6_armhf.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_armhf.deb) ...
Selecting previously unselected package libpango1.0-0:armhf.
Unpacking libpango1.0-0:armhf (from .../libpango1.0-0_1.30.0-1_armhf.deb) ...
Selecting previously unselected package libpaper1:armhf.
Unpacking libpaper1:armhf (from .../libpaper1_1.1.24+nmu2_armhf.deb) ...
Selecting previously unselected package libpcrecpp0:armhf.
-Unpacking libpcrecpp0:armhf (from .../libpcrecpp0_1%3a8.30-5_armhf.deb) ...
+Unpacking libpcrecpp0:armhf (from .../libpcrecpp0_1%3a8.31-2_armhf.deb) ...
Selecting previously unselected package libsm6:armhf.
Unpacking libsm6:armhf (from .../libsm6_2%3a1.2.1-2_armhf.deb) ...
Selecting previously unselected package libjbig0:armhf.
Unpacking libjbig0:armhf (from .../libjbig0_2.0-2_armhf.deb) ...
-Selecting previously unselected package libtiff4:armhf.
-Unpacking libtiff4:armhf (from .../libtiff4_3.9.6-6_armhf.deb) ...
-Selecting previously unselected package libxext6:armhf.
-Unpacking libxext6:armhf (from .../libxext6_2%3a1.3.1-2_armhf.deb) ...
+Selecting previously unselected package libtiff5:armhf.
+Unpacking libtiff5:armhf (from .../libtiff5_4.0.2-6_armhf.deb) ...
Selecting previously unselected package libxss1:armhf.
Unpacking libxss1:armhf (from .../libxss1_1%3a1.2.2-1_armhf.deb) ...
Selecting previously unselected package libxt6:armhf.
Unpacking libxt6:armhf (from .../libxt6_1%3a1.1.3-1_armhf.deb) ...
-Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_armhf.deb) ...
-Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-9_armhf.deb) ...
-Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.2-1_armhf.deb) ...
+Selecting previously unselected package libmpc3:armhf.
+Unpacking libmpc3:armhf (from .../libmpc3_1.0.1-1_armhf.deb) ...
Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.11-2_armhf.deb) ...
+Unpacking file (from .../file_1%3a5.14-1_armhf.deb) ...
Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_armhf.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_armhf.deb) ...
Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.116_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
+Preparing to replace libstdc++6-4.6-dev 4.6.3-15 (using .../libstdc++6-4.6-dev_4.6.4-2_armhf.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.3-15 (using .../g++-4.6_4.6.4-2_armhf.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.3-15 (using .../gcc-4.6_4.6.4-2_armhf.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace cpp-4.6 4.6.3-15 (using .../cpp-4.6_4.6.4-2_armhf.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace gcc-4.6-base:armhf 4.6.3-15 (using .../gcc-4.6-base_4.6.4-2_armhf.deb) ...
+Unpacking replacement gcc-4.6-base:armhf ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15+b1_armhf.deb) ...
+Selecting previously unselected package libasprintf-dev:armhf.
+Unpacking libasprintf-dev:armhf (from .../libasprintf-dev_0.18.1.1-10_armhf.deb) ...
+Selecting previously unselected package libgettextpo-dev:armhf.
+Unpacking libgettextpo-dev:armhf (from .../libgettextpo-dev_0.18.1.1-10_armhf.deb) ...
Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-9_armhf.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-10_armhf.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20130509_all.deb) ...
Selecting previously unselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-8_armhf.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.4-2_armhf.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.3-7_armhf.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.3-8_armhf.deb) ...
Selecting previously unselected package libblas3.
Unpacking libblas3 (from .../libblas3_1.2.20110419-5_armhf.deb) ...
Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_armhf.deb) ...
Selecting previously unselected package libbz2-dev:armhf.
-Unpacking libbz2-dev:armhf (from .../libbz2-dev_1.0.6-3_armhf.deb) ...
+Unpacking libbz2-dev:armhf (from .../libbz2-dev_1.0.6-4_armhf.deb) ...
Selecting previously unselected package libjpeg8-dev:armhf.
Unpacking libjpeg8-dev:armhf (from .../libjpeg8-dev_8d-1_armhf.deb) ...
Selecting previously unselected package liblapack3.
-Unpacking liblapack3 (from .../liblapack3_3.4.1-5_armhf.deb) ...
+Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_armhf.deb) ...
Selecting previously unselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.4.1-5_armhf.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.4.2+dfsg-1_armhf.deb) ...
Selecting previously unselected package libtinfo-dev:armhf.
-Unpacking libtinfo-dev:armhf (from .../libtinfo-dev_5.9-10_armhf.deb) ...
-Selecting previously unselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-10_armhf.deb) ...
+Unpacking libtinfo-dev:armhf (from .../libtinfo-dev_5.9+20130504-1_armhf.deb) ...
+Selecting previously unselected package libncurses5-dev:armhf.
+Unpacking libncurses5-dev:armhf (from .../libncurses5-dev_5.9+20130504-1_armhf.deb) ...
Selecting previously unselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_armhf.deb) ...
-Selecting previously unselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_1%3a8.30-5_armhf.deb) ...
+Selecting previously unselected package libpcre3-dev:armhf.
+Unpacking libpcre3-dev:armhf (from .../libpcre3-dev_1%3a8.31-2_armhf.deb) ...
Selecting previously unselected package zlib1g-dev:armhf.
-Unpacking zlib1g-dev:armhf (from .../zlib1g-dev_1%3a1.2.7.dfsg-13_armhf.deb) ...
+Unpacking zlib1g-dev:armhf (from .../zlib1g-dev_1%3a1.2.8.dfsg-1_armhf.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-2_armhf.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_armhf.deb) ...
Selecting previously unselected package libreadline6-dev:armhf.
-Unpacking libreadline6-dev:armhf (from .../libreadline6-dev_6.2-8+b1_armhf.deb) ...
+Unpacking libreadline6-dev:armhf (from .../libreadline6-dev_6.2+dfsg-0.1_armhf.deb) ...
Selecting previously unselected package libreadline-dev:armhf.
-Unpacking libreadline-dev:armhf (from .../libreadline-dev_6.2-8+b1_armhf.deb) ...
+Unpacking libreadline-dev:armhf (from .../libreadline-dev_6.2+dfsg-0.1_armhf.deb) ...
Selecting previously unselected package zip.
-Unpacking zip (from .../archives/zip_3.0-6_armhf.deb) ...
+Unpacking zip (from .../archives/zip_3.0-7_armhf.deb) ...
Selecting previously unselected package unzip.
-Unpacking unzip (from .../archives/unzip_6.0-7_armhf.deb) ...
+Unpacking unzip (from .../archives/unzip_6.0-9_armhf.deb) ...
Selecting previously unselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-6_all.deb) ...
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
Selecting previously unselected package tcl8.5.
Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_armhf.deb) ...
Selecting previously unselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.11-2_armhf.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.15.1-4_armhf.deb) ...
+Unpacking r-base-core (from .../r-base-core_3.0.1-1_armhf.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.15.1-4_all.deb) ...
-Setting up libgomp1:armhf (4.7.1-5) ...
-Setting up libpipeline1:armhf (1.2.1-1) ...
-Setting up libasprintf0c2:armhf (0.18.1.1-9) ...
-Setting up libmagic1:armhf (5.11-2) ...
-Setting up libpcre3:armhf (1:8.30-5) ...
-Setting up libxml2:armhf (2.8.0+dfsg1-4) ...
-Setting up libexpat1:armhf (2.1.0-1) ...
-Setting up libfreetype6:armhf (2.4.9-1) ...
+Unpacking r-base-dev (from .../r-base-dev_3.0.1-1_all.deb) ...
+Setting up libc-dev-bin (2.17-2) ...
+Setting up libc6-dev:armhf (2.17-2) ...
+Setting up libpipeline1:armhf (1.2.3-1) ...
+Setting up groff-base (1.22.2-2) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.3-6) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:armhf (0.18.1.1-10) ...
+Setting up libmagic1:armhf (1:5.14-1) ...
+Setting up libpcre3:armhf (1:8.31-2) ...
+Setting up libxml2:armhf (2.8.0+dfsg1-7+nmu1) ...
+Setting up libexpat1:armhf (2.1.0-3) ...
+Setting up libfreetype6:armhf (2.4.9-1.1) ...
Setting up ucf (3.0025+nmu3) ...
-Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.9.0-6) ...
-Setting up libfontconfig1:armhf (2.9.0-6) ...
-Setting up libpixman-1-0:armhf (0.26.0-3) ...
-Setting up libpng12-0:armhf (1.2.49-2) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:armhf (2.9.0-7.1) ...
+Setting up libpixman-1-0:armhf (0.26.0-4) ...
+Setting up libpng12-0:armhf (1.2.49-4) ...
Setting up libxau6:armhf (1:1.0.7-1) ...
Setting up libxdmcp6:armhf (1:1.1.1-1) ...
-Setting up libxcb1:armhf (1.8.1-1) ...
+Setting up libxcb1:armhf (1.8.1-2) ...
Setting up libx11-data (2:1.5.0-1) ...
Setting up libx11-6:armhf (2:1.5.0-1) ...
-Setting up libxcb-render0:armhf (1.8.1-1) ...
-Setting up libxcb-shm0:armhf (1.8.1-1) ...
+Setting up libxcb-render0:armhf (1.8.1-2) ...
+Setting up libxcb-shm0:armhf (1.8.1-2) ...
+Setting up libxext6:armhf (2:1.3.1-2) ...
Setting up libxrender1:armhf (1:0.9.7-1) ...
-Setting up libcairo2:armhf (1.12.2-2) ...
-Setting up libffi5:armhf (3.0.10-3+b1) ...
-Setting up libglib2.0-0:armhf (2.32.3-1) ...
+Setting up libcairo2:armhf (1.12.14-4) ...
+Setting up libffi6:armhf (3.0.13-4) ...
+Setting up libglib2.0-0:armhf (2.36.1-2build1) ...
No schema files found: doing nothing.
-Setting up libcroco3:armhf (0.6.5-1) ...
-Setting up libdatrie1:armhf (0.2.5-3) ...
+Setting up libcroco3:armhf (0.6.6-2) ...
+Setting up libdatrie1:armhf (0.2.6-2) ...
Setting up libunistring0:armhf (0.9.3-5+b1) ...
-Setting up libgettextpo0:armhf (0.18.1.1-9) ...
-Setting up libgfortran3:armhf (4.7.1-5) ...
-Setting up x11-common (1:7.7+1) ...
+Setting up libgettextpo0:armhf (0.18.1.1-10) ...
+Setting up gcc-4.8-base:armhf (4.8.0-7) ...
+Setting up libgfortran3:armhf (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6:armhf (2:1.0.8-2) ...
Setting up libjpeg8:armhf (8d-1) ...
-Setting up libthai-data (0.1.18-1) ...
-Setting up libthai0:armhf (0.1.18-1) ...
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:armhf (0.1.19-2) ...
Setting up libxft2:armhf (2.3.1-1) ...
-Setting up fontconfig (2.9.0-6) ...
-Cleaning up old fontconfig caches... done.
+Setting up fontconfig (2.9.0-7.1) ...
Regenerating fonts cache... done.
Setting up libpango1.0-0:armhf (1.30.0-1) ...
Setting up libpaper1:armhf (1.1.24+nmu2) ...
Creating config file /etc/papersize with new version
-Setting up libpcrecpp0:armhf (1:8.30-5) ...
+Setting up libpcrecpp0:armhf (1:8.31-2) ...
Setting up libsm6:armhf (2:1.2.1-2) ...
Setting up libjbig0:armhf (2.0-2) ...
-Setting up libtiff4:armhf (3.9.6-6) ...
-Setting up libxext6:armhf (2:1.3.1-2) ...
+Setting up libtiff5:armhf (4.0.2-6) ...
Setting up libxss1:armhf (1:1.2.2-1) ...
Setting up libxt6:armhf (1:1.1.3-1) ...
-Setting up bsdmainutils (9.0.3) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
-Setting up groff-base (1.21-9) ...
-Setting up man-db (2.6.2-1) ...
-Building database of manual pages ...
-Setting up file (5.11-2) ...
-Setting up gettext-base (0.18.1.1-9) ...
-Setting up cdbs (0.4.116) ...
+Setting up libmpc3:armhf (1.0.1-1) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
+Setting up gcc-4.6-base:armhf (4.6.4-2) ...
+Setting up cpp-4.6 (4.6.4-2) ...
+Setting up gcc-4.6 (4.6.4-2) ...
Setting up html2text (1.3.2a-15+b1) ...
-Setting up gettext (0.18.1.1-9) ...
+Setting up libasprintf-dev:armhf (0.18.1.1-10) ...
+Setting up libgettextpo-dev:armhf (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120608) ...
-Setting up gfortran-4.6 (4.6.3-8) ...
-Setting up gfortran (4:4.6.3-7) ...
+Setting up debhelper (9.20130509) ...
+Setting up gfortran-4.6 (4.6.4-2) ...
+Setting up gfortran (4:4.6.3-8) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
Setting up libblas3 (1.2.20110419-5) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libblas-dev (1.2.20110419-5) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
-Setting up libbz2-dev:armhf (1.0.6-3) ...
+Setting up libbz2-dev:armhf (1.0.6-4) ...
Setting up libjpeg8-dev:armhf (8d-1) ...
-Setting up liblapack3 (3.4.1-5) ...
+Setting up liblapack3 (3.4.2+dfsg-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
-Setting up liblapack-dev (3.4.1-5) ...
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
-Setting up libtinfo-dev:armhf (5.9-10) ...
-Setting up libncurses5-dev (5.9-10) ...
+Setting up libtinfo-dev:armhf (5.9+20130504-1) ...
+Setting up libncurses5-dev:armhf (5.9+20130504-1) ...
Setting up libpaper-utils (1.1.24+nmu2) ...
-Setting up libpcre3-dev (1:8.30-5) ...
-Setting up zlib1g-dev:armhf (1:1.2.7.dfsg-13) ...
-Setting up libpng12-dev (1.2.49-2) ...
-Setting up libreadline6-dev:armhf (6.2-8+b1) ...
-Setting up libreadline-dev:armhf (6.2-8+b1) ...
-Setting up zip (3.0-6) ...
-Setting up unzip (6.0-7) ...
-Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
+Setting up libpcre3-dev:armhf (1:8.31-2) ...
+Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:armhf (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:armhf (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
Setting up tcl8.5 (8.5.11-2) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
Setting up tk8.5 (8.5.11-2) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
-Setting up r-base-core (2.15.1-4) ...
-Setting R_PAPERSIZE_USER default to 'a4'
+Setting up r-base-core (3.0.1-1) ...
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.15.1-4) ...
+Setting up r-base-dev (3.0.1-1) ...
+Setting up g++-4.6 (4.6.4-2) ...
+Setting up libstdc++6-4.6-dev (4.6.4-2) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 6 not upgraded.
+The following package was automatically installed and is no longer required:
+ libmpc2
+Use 'apt-get autoremove' to remove it.
+0 upgraded, 0 newly installed, 0 to remove and 25 not upgraded.
Checking correctness of dependencies...
-Kernel: Linux 3.2.0-2-mx5 armhf (armv7l)
-Toolchain package versions: binutils_2.22-7 dpkg-dev_1.16.7 g++-4.6_4.6.3-8 gcc-4.6_4.6.3-8 libc6-dev_2.13-34 libstdc++6_4.7.1-5 libstdc++6-4.6-dev_4.6.3-8 linux-libc-dev_3.2.21-3
-Package versions: apt_0.9.7.1 base-files_6.11 base-passwd_3.5.26 bash_4.2-3 binutils_2.22-7 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.1 build-essential_11.5+b1 bzip2_1.0.6-3 cdbs_0.4.116 coreutils_8.13-3.2 cpp_4:4.6.3-7 cpp-4.6_4.6.3-8 dash_0.5.7-3 debconf_1.5.45 debconf-i18n_1.5.45 debfoster_2.7-1.1+b1 debhelper_9.20120608 debian-archive-keyring_2012.4 debianutils_4.3.2 diffutils_1:3.2-6 dpkg_1.16.7 dpkg-dev_1.16.7 e2fslibs_1.42.4-3 e2fsprogs_1.42.4-3 fakeroot_1.18.4-2 file_5.11-2 findutils_4.4.2-4 fontconfig_2.9.0-6 fontconfig-config_2.9.0-6 g++_4:4.6.3-7 g++-4.6_4.6.3-8 gcc_4:4.6.3-7 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.4-1 gcc-4.6_4.6.3-8 gcc-4.6-base_4.6.3-8 gcc-4.7-base_4.7.1-5 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gfortran_4:4.6.3-7 gfortran-4.6_4.6.3-8 gnupg_1.4.12-4+b1 gpgv_1.4.12-4+b1 grep_2.12-2 groff-base_1.21-9 gzip_1.5-1.1 hostname_3.11 html2text_1.3.2a-15+b1 initscripts_2.88dsf-28 insserv_1.14.0-4 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7.1 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-8 libblas-dev_1.2.20110419-5 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.1 libbz2-1.0_1.0.6-3 libbz2-dev_1.0.6-3 libc-bin_2.13-34 libc-dev-bin_2.13-34 libc6_2.13-34 libc6-dev_2.13-34 libcairo2_1.12.2-2 libclass-isa-perl_0.36-3 libcomerr2_1.42.4-3 libcroco3_0.6.5-1 libdatrie1_0.2.5-3 libdb5.1_5.1.29-5 libdpkg-perl_1.16.7 libexpat1_2.1.0-1 libffi5_3.0.10-3+b1 libfile-fcntllock-perl_0.14-2 libfontconfig1_2.9.0-6 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8+b1 libgcc1_1:4.7.1-5 libgdbm3_1.8.3-11 libgettextpo0_0.18.1.1-9 libgfortran3_4.7.1-5 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.1-5 libice6_2:1.0.8-2 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.4.1-5 liblapack3_3.4.1-5 liblocale-gettext-perl_1.05-7+b3 liblzma5_5.1.1alpha+20120614-1 libmagic1_5.11-2 libmount1_2.20.1-5.1 libmpc2_0.9-4+b1 libmpfr4_3.1.0-5 libncurses5_5.9-10 libncurses5-dev_5.9-10 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.30-5 libpcre3-dev_1:8.30-5 libpcrecpp0_1:8.30-5 libpipeline1_1.2.1-1 libpixman-1-0_0.26.0-3 libpng12-0_1.2.49-2 libpng12-dev_1.2.49-2 libreadline-dev_6.2-8+b1 libreadline6_6.2-8+b1 libreadline6-dev_6.2-8+b1 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libss2_1.42.4-3 libstdc++6_4.7.1-5 libstdc++6-4.6-dev_4.6.3-8 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b2 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.18-1 libthai0_0.1.18-1 libtiff4_3.9.6-6 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-10 libtinfo5_5.9-10 libunistring0_0.9.3-5+b1 libusb-0.1-4_2:0.1.12-23 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.1 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-4 libxrender1_1:0.9.7-1 libxss1_1:1.2.2-1 libxt6_1:1.1.3-1 linux-libc-dev_3.2.21-3 login_1:4.1.5.1-1 lsb-base_4.1+Debian7 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5.1 multiarch-support_2.13-34 ncurses-base_5.9-10 ncurses-bin_5.9-10 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-12 perl-base_5.14.2-12 perl-modules_5.14.2-12 po-debconf_1.0.16+nmu2 r-base-core_2.15.1-4 r-base-dev_2.15.1-4 readline-common_6.2-8 sed_4.2.1-10 sensible-utils_0.0.7 sudo_1.8.5p2-1 sysv-rc_2.88dsf-28 sysvinit_2.88dsf-28 sysvinit-utils_2.88dsf-28 tar_1.26-4 tcl8.5_8.5.11-2 tk8.5_8.5.11-2 ttf-dejavu-core_2.33-2 tzdata_2012c-1 ucf_3.0025+nmu3 unzip_6.0-7 util-linux_2.20.1-5.1 x11-common_1:7.7+1 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20120614-1 zip_3.0-6 zlib1g_1:1.2.7.dfsg-13 zlib1g-dev_1:1.2.7.dfsg-13
+Kernel: Linux 3.2.0-4-mx5 armhf (armv7l)
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.6_4.6.4-2 gcc-4.6_4.6.4-2 libc6-dev_2.17-2 libstdc++6_4.7.2-5 libstdc++6-4.6-dev_4.6.4-2 linux-libc-dev_3.2.41-2
+Package versions: apt_0.9.7.8 base-files_7.1 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.20-3 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2 dash_0.5.7-3 debconf_1.5.49 debfoster_2.7-1.2 debhelper_9.20130509 debian-archive-keyring_2012.4 debian-ports-archive-keyring_2012.12.30 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-1 findutils_4.4.2-5 fontconfig_2.9.0-7.1 fontconfig-config_2.9.0-7.1 fonts-dejavu-core_2.33+svn2514-3 g++_4:4.6.3-8 g++-4.6_4.6.4-2 gcc_4:4.6.3-8 gcc-4.5-base_4.5.4-1 gcc-4.6_4.6.4-2 gcc-4.6-base_4.6.4-2 gcc-4.7-base_4.7.2-5 gcc-4.8-base_4.8.0-7 gettext_0.18.1.1-10 gettext-base_0.18.1.1-10 gfortran_4:4.6.3-8 gfortran-4.6_4.6.4-2 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.14-1 groff-base_1.22.2-2 gzip_1.5-1.1 hostname_3.12 html2text_1.3.2a-15+b1 initscripts_2.88dsf-41 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libalgorithm-diff-perl_1.19.02-3 libalgorithm-merge-perl_0.08-2 libapt-pkg4.12_0.9.7.8 libasprintf-dev_0.18.1.1-10 libasprintf0c2_0.18.1.1-10 libattr1_1:2.4.46-8 libblas-dev_1.2.20110419-5 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.3 libbz2-1.0_1.0.6-4 libbz2-dev_1.0.6-4 libc-bin_2.13-38 libc-dev-bin_2.17-2 libc6_2.17-2 libc6-dev_2.17-2 libcairo2_1.12.14-4 libclass-isa-perl_0.36-5 libcomerr2_1.42.5-1.1 libcroco3_0.6.6-2 libdatrie1_0.2.6-2 libdb5.1_5.1.29-5 libdpkg-perl_1.16.10 libexpat1_2.1.0-3 libffi6_3.0.13-4 libfile-fcntllock-perl_0.14-2 libfontconfig1_2.9.0-7.1 libfreetype6_2.4.9-1.1 libgc1c2_1:7.1-9.1 libgcc1_1:4.7.2-5 libgdbm3_1.8.3-11 libgettextpo-dev_0.18.1.1-10 libgettextpo0_0.18.1.1-10 libgfortran3_4.8.0-7 libglib2.0-0_2.36.1-2build1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.2-5 libice6_2:1.0.8-2 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.4.2+dfsg-1 liblapack3_3.4.2+dfsg-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-1 libmount1_2.20.1-5.3 libmpc2_0.9-4+b1 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libncurses5_5.9+20130504-1 libncurses5-dev_5.9+20130504-1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.31-2 libpcre3-dev_1:8.31-2 libpcrecpp0_1:8.31-2 libpipeline1_1.2.3-1 libpixman-1-0_0.26.0-4 libpng12-0_1.2.49-4 libpng12-dev_1.2.49-4 libreadline-dev_6.2+dfsg-0.1 libreadline6_6.2+dfsg-0.1 libreadline6-dev_6.2+dfsg-0.1 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libss2_1.42.5-1.1 libstdc++6_4.7.2-5 libstdc++6-4.6-dev_4.6.4-2 libswitch-perl_2.16-2 libthai-data_0.1.19-2 libthai0_0.1.19-2 libtiff5_4.0.2-6 libtimedate-perl_1.2000-1 libtinfo-dev_5.9+20130504-1 libtinfo5_5.9+20130504-1 libunistring0_0.9.3-5+b1 libusb-0.1-4_2:0.1.12-23+nmu1 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.3 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-2 libxcb-shm0_1.8.1-2 libxcb1_1.8.1-2 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-7+nmu1 libxrender1_1:0.9.7-1 libxss1_1:1.2.2-1 libxt6_1:1.1.3-1 linux-libc-dev_3.2.41-2 login_1:4.1.5.1-1 lsb-base_4.1+Debian9 make_3.81-8.2 man-db_2.6.3-6 manpages_3.44-1 manpages-dev_3.44-1 mawk_1.3.3-17 mount_2.20.1-5.3 multiarch-support_2.13-38 ncurses-base_5.9-10 ncurses-bin_5.9+20130504-1 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-21 perl-base_5.14.2-21 perl-modules_5.14.2-21 po-debconf_1.0.16+nmu2 r-base-core_3.0.1-1 r-base-dev_3.0.1-1 readline-common_6.2+dfsg-0.1 sed_4.2.1-10 sensible-utils_0.0.7 sudo_1.8.5p2-1+nmu1 sysv-rc_2.88dsf-41 sysvinit_2.88dsf-41 sysvinit-utils_2.88dsf-41 tar_1.26+dfsg-5 tcl8.5_8.5.11-2 tk8.5_8.5.11-2 ttf-dejavu-core_2.33+svn2514-3 tzdata_2013b-2 ucf_3.0025+nmu3 unzip_6.0-9 util-linux_2.20.1-5.3 x11-common_1:7.7+3 xdg-utils_1.1.0~rc1+git20111210-7 xz-utils_5.1.1alpha+20120614-2 zip_3.0-7 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -554,12 +651,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Apr 12 02:45:32 2012 UTC using RSA key ID 2295D502
+gpgv: Signature made Thu May 16 14:46:42 2013 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.12.0~dfsg-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.12.0~dfsg
-dpkg-source: info: unpacking r-bioc-limma_3.12.0~dfsg.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.12.0~dfsg-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.16.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.16.3~dfsg
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg-1.debian.tar.gz
Check disc space
────────────────
@@ -569,27 +666,12 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.12.0~dfsg-1
- dpkg-source --before-build r-bioc-limma-3.12.0~dfsg
+dpkg-buildpackage: source version 3.16.3~dfsg-1
+ dpkg-source --before-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
-/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-armhf-nMHifX/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-armhf-nMHifX/r-bioc-limma-3.12.0~dfsg'
-if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "reverse-patches" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-for dir in debian/patches ; do \
- rm -f $dir/*.log ; \
- done
dh_clean
rm -f debian/r-bioc-limma.substvars
rm -f debian/r-bioc-limma.*.debhelper
@@ -610,26 +692,9 @@ if test -d src; then \
fi
rm -f config.log config.status
debian/rules build-arch
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
-/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-armhf-nMHifX/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-armhf-nMHifX/r-bioc-limma-3.12.0~dfsg'
-if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-armhf-nMHifX/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-armhf-nMHifX/r-bioc-limma-3.12.0~dfsg'
fakeroot debian/rules binary-arch
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
@@ -641,26 +706,26 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
install -d debian/r-bioc-limma/usr/lib/R/site-library
-echo "R:Depends=r-base-core (>= 2.15.1-4)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 3.0.1-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-armhf-nMHifX/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-armhf-JigfHE/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-armhf-nMHifX/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-armhf-JigfHE/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-armhf-nMHifX/r-bioc-limma-3.12.0~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-armhf-JigfHE/r-bioc-limma-3.16.3~dfsg/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-armhf-nMHifX/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-armhf-nMHifX/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-armhf-nMHifX/r-bioc-limma-3.12.0~dfsg/src'
-installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-armhf-nMHifX/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-armhf-JigfHE/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-armhf-JigfHE/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-armhf-JigfHE/r-bioc-limma-3.16.3~dfsg/src'
+installing to /build/buildd-r-bioc-limma_3.16.3~dfsg-1-armhf-JigfHE/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -668,22 +733,27 @@ installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-armhf-nMHifX/r-bioc-limma
*** installing help indices
** building package indices
** installing vignettes
- 'limma.Rnw'
** testing if installed package can be loaded
-
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.12.0~dfsg-1-armhf-nMHifX/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-armhf-nMHifX/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-armhf-nMHifX/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.16.3~dfsg-1-armhf-JigfHE/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-armhf-JigfHE/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-armhf-JigfHE/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.12.0~dfsg-1-armhf-nMHifX/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.16.3~dfsg-1-armhf-JigfHE/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-armhf-nMHifX/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-armhf-JigfHE/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/CITATION
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/doc/*
dh_installdocs -pr-bioc-limma
install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-limma_3.16.3~dfsg-1-armhf-JigfHE/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/doc/r-bioc-limma \;
+ cp -a debian/README.test debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ chown -R 0:0 debian/r-bioc-limma/usr/share/doc
+ chmod -R go=rX debian/r-bioc-limma/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-limma/usr/share/doc
install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
@@ -715,9 +785,9 @@ dh_strip -pr-bioc-limma
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
cd debian/r-bioc-limma
- chmod a-x usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/changelog.Debian
- gzip -9nf usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/changelog.Debian
- cd '/build/buildd-r-bioc-limma_3.12.0~dfsg-1-armhf-nMHifX/r-bioc-limma-3.12.0~dfsg'
+ chmod a-x usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ gzip -9nf usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ cd '/build/buildd-r-bioc-limma_3.16.3~dfsg-1-armhf-JigfHE/r-bioc-limma-3.16.3~dfsg'
dh_fixperms -pr-bioc-limma
find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -747,62 +817,79 @@ dh_md5sums -pr-bioc-limma
chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
dpkg-deb --build debian/r-bioc-limma ..
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.12.0~dfsg-1_armhf.deb'.
- dpkg-genchanges -B -marmhf Build Daemon (henze) <buildd_armhf-henze at buildd.debian.org> >../r-bioc-limma_3.12.0~dfsg-1_armhf.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.16.3~dfsg-1_armhf.deb'.
+ dpkg-genchanges -B -marmhf Build Daemon (hasse) <buildd_armhf-hasse at buildd.debian.org> >../r-bioc-limma_3.16.3~dfsg-1_armhf.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.12.0~dfsg
+ dpkg-source --after-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120720-1527
+Build finished at 20130516-1544
-r-bioc-limma_3.12.0~dfsg-1_armhf.changes:
+r-bioc-limma_3.16.3~dfsg-1_armhf.changes:
Format: 1.8
-Date: Thu, 12 Apr 2012 11:40:40 +0900
+Date: Thu, 16 May 2013 15:16:13 +0200
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: armhf
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
Distribution: sid
Urgency: low
-Maintainer: armhf Build Daemon (henze) <buildd_armhf-henze at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Maintainer: armhf Build Daemon (hasse) <buildd_armhf-hasse at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.12.0~dfsg-1) unstable; urgency=low
+ r-bioc-limma (3.16.3~dfsg-1) unstable; urgency=low
.
[ Charles Plessy ]
- 2d3420e Imported Upstream version 3.12.0~dfsg
- 4bbb8e4 Document LIMMA's copyright as a whole.
+ ff8c6db Imported Upstream version 3.12.1~dfsg
+ b4f097e Effective license is GPL-2, without the '+', as R is GPL-2.
.
[ Andreas Tille ]
- 8a61a4c Obtain references from inst/CITATION
+ * Imported new upstream version 3.16.3~dfsg
+ * debian/control
+ - added myself to Uploaders
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - Fake normalisation as it is done by `cme fix dpkg-control`
+ (the command did actually no change - the control file was
+ brought into shape manually)
+ - Removed versioned dependency of r-base-dev
+ * debian/copyright:
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - checked new upstream version and bumped version number
+ - Add years to Copyright fields
+ * debian/rules: Remove executable flag from doc files
+ * debian/source/format: Add explicit source format specification
Checksums-Sha1:
- ce5d13a6df53c429e0197a41d694bf0bc5badb74 806362 r-bioc-limma_3.12.0~dfsg-1_armhf.deb
+ 881f5ad3c4eaf5e1925a480fb98760eaf89b2d1e 1613250 r-bioc-limma_3.16.3~dfsg-1_armhf.deb
Checksums-Sha256:
- 529e06e376a90fbc5e9cecbc6823f24fff45000896e33c760dc061cada18a471 806362 r-bioc-limma_3.12.0~dfsg-1_armhf.deb
+ 59e089acb8a24d1cf3a8369674326f6f37de6ed2b6346aa967b5a6290fb88198 1613250 r-bioc-limma_3.16.3~dfsg-1_armhf.deb
Files:
- cc03e9dd3707a22f09fc5e77a18a1700 806362 gnu-r optional r-bioc-limma_3.12.0~dfsg-1_armhf.deb
+ 788737859bfc0547b267614b9f79a646 1613250 gnu-r optional r-bioc-limma_3.16.3~dfsg-1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.12.0~dfsg-1_armhf.deb
+r-bioc-limma_3.16.3~dfsg-1_armhf.deb
────────────────────────────────────
new debian package, version 2.0.
- size 806362 bytes: control archive=1547 bytes.
- 777 bytes, 16 lines control
- 2290 bytes, 30 lines md5sums
+ size 1613250 bytes: control archive=1670 bytes.
+ 773 bytes, 16 lines control
+ 2621 bytes, 34 lines md5sums
Package: r-bioc-limma
- Version: 3.12.0~dfsg-1
+ Version: 3.16.3~dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 981
- Depends: libc6 (>= 2.13-28), r-base-core (>= 2.15.1-4)
+ Installed-Size: 1843
+ Depends: libc6 (>= 2.4), r-base-core (>= 3.0.1-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -814,51 +901,56 @@ r-bioc-limma_3.12.0~dfsg-1_armhf.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2012-07-20 15:27 ./
-drwxr-xr-x root/root 0 2012-07-20 15:26 ./usr/
-drwxr-xr-x root/root 0 2012-07-20 15:26 ./usr/lib/
-drwxr-xr-x root/root 0 2012-07-20 15:26 ./usr/lib/R/
-drwxr-xr-x root/root 0 2012-07-20 15:26 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2012-07-20 15:26 ./usr/lib/R/site-library/limma/
-drwxr-xr-x root/root 0 2012-07-20 15:27 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 6688 2012-07-20 15:27 ./usr/lib/R/site-library/limma/libs/limma.so
--rw-r--r-- root/root 974 2012-07-20 15:26 ./usr/lib/R/site-library/limma/DESCRIPTION
--rwxr-xr-x root/root 1230 2012-07-20 15:26 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2012-07-20 15:26 ./usr/lib/R/site-library/limma/doc/
--rw-r--r-- root/root 42743 2012-07-20 15:26 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 1711 2012-07-20 15:26 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rwxr-xr-x root/root 91993 2012-07-20 15:26 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 673 2012-07-20 15:26 ./usr/lib/R/site-library/limma/doc/index.html
-drwxr-xr-x root/root 0 2012-07-20 15:26 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1367 2012-07-20 15:26 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 6317 2012-07-20 15:26 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 2431 2012-07-20 15:26 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 472770 2012-07-20 15:26 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3344 2012-07-20 15:26 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 3989 2012-07-20 15:26 ./usr/lib/R/site-library/limma/NEWS.Rd
--rw-r--r-- root/root 1901 2012-07-20 15:26 ./usr/lib/R/site-library/limma/NAMESPACE
-drwxr-xr-x root/root 0 2012-07-20 15:26 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 522 2012-07-20 15:26 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 1065 2012-07-20 15:26 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 2945 2012-07-20 15:26 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 5729 2012-07-20 15:26 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 6159 2012-07-20 15:26 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 220 2012-07-20 15:26 ./usr/lib/R/site-library/limma/Meta/vignette.rds
-drwxr-xr-x root/root 0 2012-07-20 15:26 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 35015 2012-07-20 15:26 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2012-07-20 15:26 ./usr/lib/R/site-library/limma/html/R.css
-drwxr-xr-x root/root 0 2012-07-20 15:26 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 383 2012-07-20 15:26 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 202285 2012-07-20 15:26 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3828 2012-07-20 15:26 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 9754 2012-07-20 15:26 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2012-07-20 15:26 ./usr/share/
-drwxr-xr-x root/root 0 2012-07-20 15:26 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-07-20 15:27 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 264 2012-07-20 15:25 ./usr/share/doc/r-bioc-limma/README.Debian
--rw-r--r-- root/root 27996 2012-03-30 22:32 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 683 2012-07-20 15:25 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 2457 2012-07-20 15:25 ./usr/share/doc/r-bioc-limma/copyright
+drwxr-xr-x root/root 0 2013-05-16 15:44 ./
+drwxr-xr-x root/root 0 2013-05-16 15:44 ./usr/
+drwxr-xr-x root/root 0 2013-05-16 15:44 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-16 15:44 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-16 15:44 ./usr/share/doc/r-bioc-limma/
+drwxr-xr-x root/root 0 2013-05-16 15:44 ./usr/share/doc/r-bioc-limma/tests/
+-rw-r--r-- root/root 14649 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save.gz
+-rw-r--r-- root/root 2097 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.R.gz
+-rw-r--r-- root/root 1153 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 264 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 31097 2013-05-02 00:02 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 2605 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 437 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.test
+drwxr-xr-x root/root 0 2013-05-16 15:43 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-16 15:43 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-16 15:44 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-16 15:44 ./usr/lib/R/site-library/limma/
+drwxr-xr-x root/root 0 2013-05-16 15:44 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 1711 2013-05-16 15:43 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 45597 2013-05-16 15:43 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 806089 2013-05-16 15:43 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 102936 2013-05-16 15:43 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 673 2013-05-16 15:43 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 2046 2013-05-16 15:43 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 11214 2013-05-16 15:43 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2013-05-16 15:44 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 494570 2013-05-16 15:43 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3407 2013-05-16 15:43 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 2567 2013-05-16 15:44 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 1398 2013-05-16 15:43 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 6703 2013-05-16 15:44 ./usr/lib/R/site-library/limma/help/AnIndex
+drwxr-xr-x root/root 0 2013-05-16 15:44 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 6692 2013-05-16 15:44 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2013-05-16 15:44 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 541 2013-05-16 15:44 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 6375 2013-05-16 15:44 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 1074 2013-05-16 15:43 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 5944 2013-05-16 15:44 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 3089 2013-05-16 15:44 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 219 2013-05-16 15:44 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+drwxr-xr-x root/root 0 2013-05-16 15:43 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 206552 2013-05-16 15:43 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 4120 2013-05-16 15:43 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 1056 2013-05-16 15:43 ./usr/lib/R/site-library/limma/R/limma
+drwxr-xr-x root/root 0 2013-05-16 15:44 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 37337 2013-05-16 15:44 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2013-05-16 15:44 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 10085 2013-05-16 15:44 ./usr/lib/R/site-library/limma/INDEX
+-rw-r--r-- root/root 995 2013-05-16 15:43 ./usr/lib/R/site-library/limma/DESCRIPTION
+-rw-r--r-- root/root 963 2013-05-16 15:43 ./usr/lib/R/site-library/limma/CITATION
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -872,7 +964,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-armhf-sbuild-ae451b4d-e158-46b5-8310-daf046f6ad3f/build/buildd-r-bioc-limma_3.12.0~dfsg-1-armhf-nMHifX
+Purging /var/lib/schroot/mount/sid-armhf-sbuild-4903599b-f667-4a26-b3f2-66d4de1914b2/build/buildd-r-bioc-limma_3.16.3~dfsg-1-armhf-JigfHE
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -880,19 +972,19 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: armhf
-Build-Space: 3264
-Build-Time: 124
+Build-Space: 5848
+Build-Time: 93
Distribution: sid
-Install-Time: 179
-Job: r-bioc-limma_3.12.0~dfsg-1
+Install-Time: 235
+Job: r-bioc-limma_3.16.3~dfsg-1
Package: r-bioc-limma
-Package-Time: 418
-Source-Version: 3.12.0~dfsg-1
-Space: 3264
+Package-Time: 445
+Source-Version: 3.16.3~dfsg-1
+Space: 5848
Status: successful
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120720-1527
-Build needed 00:06:58, 3264k disc space
-Signature with key '3CE79B5E' requested:
+Finished at 20130516-1544
+Build needed 00:07:25, 5848k disc space
+Signature with key '22A8BF43' requested:
diff --git a/hurd-i386.log b/hurd-i386.log
index 9f148f5..e91cd0f 100644
--- a/hurd-i386.log
+++ b/hurd-i386.log
@@ -1,67 +1,70 @@
-From buildd at mozart.debian.net Thu Apr 12 05:30:39 2012
+From buildd at mozart.debian.net Fri May 17 12:56:00 2013
Return-path: <buildd at mozart.debian.net>
Received: from callisto.debian.net ([80.87.129.151])
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at mozart.debian.net>)
- id 1SICcA-0003fo-C6
- for logs at buildd.debian.org; Thu, 12 Apr 2012 05:30:39 +0000
+ id 1UdKCT-0005vt-Ji
+ for logs at buildd.debian.org; Fri, 17 May 2013 12:55:58 +0000
Received: from mozart.debian.net ([10.1.0.1])
by callisto.debian.net with esmtp (Exim 4.72)
(envelope-from <buildd at mozart.debian.net>)
- id 1SICc5-0008Ac-DC; Thu, 12 Apr 2012 06:30:33 +0100
-Received: from buildd by mozart.debian.net with local (Exim 4.76)
+ id 1UdKCO-0000Dn-A2; Fri, 17 May 2013 13:55:52 +0100
+Received: from buildd by mozart.debian.net with local (Exim 4.80)
(envelope-from <buildd at mozart.debian.net>)
- id 1SICcS-0000lq-Sb; Thu, 12 Apr 2012 05:30:56 +0000
+ id 1UdKCO-0006d6-2N; Fri, 17 May 2013 12:55:52 +0000
+Content-Transfer-Encoding: binary
+MIME-Version: 1.0
+X-Mailer: MIME::Lite 3.027 (F2.78; A2.08; B3.08; Q3.08)
+Date: Fri, 17 May 2013 12:55:51 +0000
From: Build Daemon <buildd at mozart.debian.net>
To: samuel.thibault at ens-lyon.org, mbanck at gmx.net, logs at buildd.debian-ports.org,
- logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.12.0~dfsg-1 on hurd-i386
+ logs at buildd.debian.org, debian-hurd-build-logs at lists.alioth.debian.org
+Subject: Log for successful build of r-bioc-limma_3.16.3~dfsg-1 on hurd-i386
(dist=sid)
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
-Message-Id: <E1SICcS-0000lq-Sb at mozart.debian.net>
-Date: Thu, 12 Apr 2012 05:30:56 +0000
+Message-Id: <E1UdKCO-0006d6-2N at mozart.debian.net>
Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on mozart.debian.net
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.12.0~dfsg-1 (hurd-i386) 12 avril 2012 05:07 ║
+║ r-bioc-limma 3.16.3~dfsg-1 (hurd-i386) 17 mai 2013 12:46 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.12.0~dfsg-1
-Source Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
+Source Version: 3.16.3~dfsg-1
Architecture: hurd-i386
-Hit http://ftp.fr.debian.org sid InRelease
-Ign http://incoming.debian.org InRelease
-Ign http://ftp.debian-ports.org unreleased InRelease
-Get:1 http://incoming.debian.org Release.gpg [836 B]
+Ign file: ./ Release.gpg
+Ign file: ./ Release
+Ign file: ./ Translation-en
+Hit http://ftp.fr.debian.org sid Release.gpg
+Hit http://ftp.fr.debian.org sid Release
+Hit http://incoming.debian.org sid Release.gpg
+Get:1 http://incoming.debian.org buildd-sid Release.gpg [1571 B]
Hit http://ftp.fr.debian.org sid/main Sources/DiffIndex
-Hit http://ftp.debian-ports.org unreleased Release.gpg
-Get:2 http://incoming.debian.org Release [1601 B]
Hit http://ftp.fr.debian.org sid/contrib Sources/DiffIndex
Hit http://ftp.fr.debian.org sid/non-free Sources/DiffIndex
+Hit http://incoming.debian.org sid Release
Hit http://ftp.fr.debian.org sid/main hurd-i386 Packages/DiffIndex
Hit http://ftp.fr.debian.org sid/contrib hurd-i386 Packages/DiffIndex
-Ign http://ftp.fr.debian.org sid/contrib TranslationIndex
-Get:3 http://ftp.fr.debian.org sid/main TranslationIndex [2223 B]
-Hit http://ftp.debian-ports.org unreleased Release
-Get:4 http://ftp.fr.debian.org sid/main 2012-04-12-0211.19.pdiff [18.3 kB]
-Get:5 http://ftp.fr.debian.org sid/non-free 2012-04-12-0211.19.pdiff [430 B]
-Get:6 http://ftp.fr.debian.org sid/main hurd-i386 2012-04-12-0211.19.pdiff [40.5 kB]
-Get:7 http://ftp.fr.debian.org sid/contrib Translation-en [37.0 kB]
-Get:8 http://incoming.debian.org Sources [43.2 kB]
-Get:9 http://ftp.fr.debian.org sid/main 2012-04-12-0211.19.pdiff [18.3 kB]
-Get:10 http://ftp.fr.debian.org sid/main Translation-en [3936 kB]
-Hit http://ftp.debian-ports.org unreleased/main hurd-i386 Packages
-Get:11 http://incoming.debian.org Packages [741 kB]
-Ign http://ftp.debian-ports.org unreleased/main TranslationIndex
-Ign http://ftp.debian-ports.org unreleased/main Translation-en
-Ign http://incoming.debian.org Translation-en
-Get:12 http://ftp.fr.debian.org sid/non-free 2012-04-12-0211.19.pdiff [430 B]
-Get:13 http://ftp.fr.debian.org sid/main hurd-i386 2012-04-12-0211.19.pdiff [40.5 kB]
-Fetched 4821 kB in 3min 38s (22.0 kB/s)
+Hit http://ftp.fr.debian.org sid/contrib Translation-en/DiffIndex
+Hit http://ftp.fr.debian.org sid/main Translation-en/DiffIndex
+Get:2 http://incoming.debian.org buildd-sid Release [109 kB]
+Hit http://incoming.debian.org sid/main Sources/DiffIndex
+Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
+Hit http://incoming.debian.org sid/non-free Sources/DiffIndex
+Hit http://incoming.debian.org sid/main hurd-i386 Packages/DiffIndex
+Hit http://incoming.debian.org sid/contrib hurd-i386 Packages/DiffIndex
+Hit http://incoming.debian.org sid/contrib Translation-en/DiffIndex
+Hit http://incoming.debian.org sid/main Translation-en/DiffIndex
+Get:3 http://incoming.debian.org buildd-sid/main Sources [107 kB]
+Get:4 http://incoming.debian.org buildd-sid/contrib Sources [873 B]
+Get:5 http://incoming.debian.org buildd-sid/non-free Sources [2683 B]
+Get:6 http://incoming.debian.org buildd-sid/main hurd-i386 Packages [51.9 kB]
+Get:7 http://incoming.debian.org buildd-sid/contrib hurd-i386 Packages [14 B]
+Get:8 http://incoming.debian.org buildd-sid/contrib Translation-en [585 B]
+Get:9 http://incoming.debian.org buildd-sid/main Translation-en [75.6 kB]
+Fetched 349 kB in 54s (6424 B/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -82,11 +85,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 288 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (dsc) [2030 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (tar) [283 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (diff) [3098 B]
-Fetched 288 kB in 1s (207 kB/s)
+Need to get 1058 kB of source archives.
+Get:1 http://ftp.fr.debian.org/debian/ sid/main r-bioc-limma 3.16.3~dfsg-1 (dsc) [1409 B]
+Get:2 http://ftp.fr.debian.org/debian/ sid/main r-bioc-limma 3.16.3~dfsg-1 (tar) [1052 kB]
+Get:3 http://ftp.fr.debian.org/debian/ sid/main r-bioc-limma 3.16.3~dfsg-1 (diff) [4167 B]
+Fetched 1058 kB in 0s (1211 kB/s)
Download complete and in download only mode
Check arch
@@ -99,296 +102,364 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.1-1+hurd.1)
+build-essential: already installed (11.6)
+fakeroot: already installed (1.18.4-2)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
- libcwidget3 libsigc++-2.0-0c2a libboost-iostreams1.46.1
- libboost-iostreams1.48.0 libboost-iostreams1.49.0 libsysfs2 libusb-0.1-4p
+ gcc-4.6-base libboost-iostreams1.49.0
Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 89 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 25 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
- libcwidget3 libsigc++-2.0-0c2a libboost-iostreams1.46.1
- libboost-iostreams1.48.0 libboost-iostreams1.49.0 libsysfs2 libusb-0.1-4p
+ gcc-4.6-base libboost-iostreams1.49.0
Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 89 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 25 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, hurd, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc0.3-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), hurd-dev, debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, hurd, libc-bin, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc0.3-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), hurd-dev, debhelper (>= 9), cdbs, r-base-dev
Checking for already installed dependencies...
-base-files: already installed (6.5)
-base-passwd: already installed (3.5.23)
-bash: already installed (4.1-3+hurd.1)
-coreutils: already installed (8.13-3)
-dash: already installed (0.5.7-2)
-debianutils: already installed (4.0.4)
-diffutils: already installed (1:3.2-1)
-dpkg: already installed (1.16.1.1)
-e2fsprogs: already installed (1.42.1-2)
-findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.9-2)
-gzip: already installed (1.3.12-9)
-hostname: already installed (3.06)
-hurd: already installed (20111206-1)
-ncurses-base: already installed (5.9-4)
-ncurses-bin: already installed (5.9-6)
-perl-base: already installed (5.14.2-9)
-sed: already installed (4.2.1-9)
-sysvinit-utils: already installed (2.88dsf-13.13)
-sysvinit: already installed (2.88dsf-13.13)
-tar: already installed (1.26-2)
-bsdutils: already installed (1:2.19.1-5)
-util-linux: already installed (2.19.1-5)
-libc0.3-dev: already installed (2.13-27)
-gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.1.1 >= 1.13.5 is satisfied)
-hurd-dev: already installed (20111206-1)
-debhelper: already installed (9.20120312 >= 8 is satisfied)
+base-files: already installed (7.1)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2+dfsg-1)
+bsdutils: already installed (1:2.20.1-5.3)
+coreutils: already installed (8.13-3.2)
+dash: already installed (0.5.7-3+b1)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1.1)
+findutils: already installed (4.4.2-5)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+hurd: already installed (20130226-1)
+libc-bin: already installed (2.13-38)
+ncurses-base: already installed (5.9-10)
+ncurses-bin: already installed (5.9+20130504-1)
+perl-base: already installed (5.14.2-18)
+sed: already installed (4.2.1-10)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-0.1)
+util-linux: already installed (2.20.1-5.3)
+libc0.3-dev: already installed (2.13-38)
+gcc: already installed (4:4.7.2-1 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.7.2-1 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2+b1)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
+hurd-dev: already installed (20130226-1)
+debhelper: missing
+Using default version 9.20130516
cdbs: missing
r-base-dev: missing
-Using default version 2.15.0-1
Checking for dependency conflicts...
-Installing positive dependencies: cdbs r-base-dev
+Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
- libcwidget3 libsigc++-2.0-0c2a libboost-iostreams1.46.1
- libboost-iostreams1.48.0 libboost-iostreams1.49.0 libsysfs2 libusb-0.1-4p
+ gcc-4.6-base libboost-iostreams1.49.0
Use 'apt-get autoremove' to remove them.
The following extra packages will be installed:
- dpatch libblas-dev libblas3gf libbz2-dev libcairo2 libdatrie1 libice6
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libncurses5-dev
+ file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base
+ gfortran gfortran-4.7 html2text intltool-debian libasprintf-dev
+ libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3
+ libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgettextpo-dev
+ libgettextpo0 libgfortran-4.7-dev libgfortran3 libice6 libjbig0 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0
libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
- libthai-data libthai0 libtiff4 libtinfo-dev libx11-6 libx11-data libxau6
- libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1
- libxss1 libxt6 r-base-core tcl8.5 tk8.5 unzip x11-common xdg-utils zip
+ libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 libxcb-render0
+ libxcb-shm0 libxext6 libxft2 libxrender1 libxss1 libxt6 po-debconf
+ r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
Suggested packages:
- devscripts curl ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
- ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp ess r-doc-info
- r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
- texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
- texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
- texi2html tclreadline gvfs-bin
+ devscripts dh-make gettext-doc gfortran-doc gfortran-4.7-doc
+ libgfortran3-dbg ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp libmail-box-perl
+ ess r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base
+ texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
+ texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
+ texlive-latex-extra texinfo texi2html tcl-tclreadline gvfs-bin
Recommended packages:
- autotools-dev patchutils r-recommended r-doc-html xterm x-terminal-emulator
- libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
- x11-xserver-utils
+ autotools-dev curl wget lynx-cur autopoint libmail-sendmail-perl
+ r-recommended r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl
+ libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
- cdbs dpatch libblas-dev libblas3gf libbz2-dev libcairo2 libdatrie1 libice6
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libncurses5-dev
+ cdbs debhelper file fontconfig fontconfig-config fonts-dejavu-core gettext
+ gettext-base gfortran gfortran-4.7 html2text intltool-debian libasprintf-dev
+ libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3
+ libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgettextpo-dev
+ libgettextpo0 libgfortran-4.7-dev libgfortran3 libice6 libjbig0 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0
libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
- libthai-data libthai0 libtiff4 libtinfo-dev libx11-6 libx11-data libxau6
- libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1
- libxss1 libxt6 r-base-core r-base-dev tcl8.5 tk8.5 unzip x11-common
+ libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 libxcb-render0
+ libxcb-shm0 libxext6 libxft2 libxrender1 libxss1 libxt6 po-debconf
+ r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
xdg-utils zip
-0 upgraded, 47 newly installed, 0 to remove and 89 not upgraded.
-Need to get 21.6 MB/37.2 MB of archives.
-After this operation, 73.7 MB of additional disk space will be used.
+0 upgraded, 68 newly installed, 0 to remove and 25 not upgraded.
+Need to get 0 B/49.9 MB of archives.
+After this operation, 107 MB of additional disk space will be used.
WARNING: The following packages cannot be authenticated!
- libpixman-1-0 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxcb-render0
- libxcb-shm0 libxrender1 libcairo2 libdatrie1 x11-common libice6 libjpeg8
- libthai-data libthai0 libxft2 libpango1.0-0 libpcrecpp0 libsm6 libtiff4
- libxext6 libxss1 libxt6 cdbs dpatch libblas3gf libblas-dev libbz2-dev
- libjpeg8-dev liblapack3gf liblapack-dev libtinfo-dev libncurses5-dev
- libpaper1 libpaper-utils libpcre3-dev libpng12-dev libreadline6-dev
+ libasprintf0c2 libmagic1 libexpat1 libfreetype6 ucf fonts-dejavu-core
+ ttf-dejavu-core fontconfig-config libfontconfig1 libpixman-1-0
+ libxcb-render0 libxcb-shm0 libxext6 libxrender1 libcairo2 libcroco3
+ libdatrie1 libunistring0 libgettextpo0 libgfortran3 x11-common libice6
+ libjpeg8 libthai-data libthai0 libxft2 fontconfig libpango1.0-0 libpaper1
+ libpcrecpp0 libsm6 libjbig0 libtiff5 libxss1 libxt6 file gettext-base cdbs
+ html2text libasprintf-dev libgettextpo-dev gettext intltool-debian
+ po-debconf debhelper libgfortran-4.7-dev gfortran-4.7 gfortran libblas3
+ libblas-dev libbz2-dev libjpeg8-dev liblapack3 liblapack-dev libtinfo-dev
+ libncurses5-dev libpaper-utils libpcre3-dev libpng12-dev libreadline6-dev
libreadline-dev zip unzip xdg-utils tcl8.5 tk8.5 r-base-core r-base-dev
-Authentication warning overridden.
-Get:1 http://ftp.fr.debian.org/debian/ sid/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB]
-Get:2 http://ftp.fr.debian.org/debian/ sid/main tk8.5 hurd-i386 8.5.11-1 [1182 kB]
-Get:3 http://ftp.fr.debian.org/debian/ sid/main r-base-core hurd-i386 2.15.0-1 [20.3 MB]
-Get:4 http://ftp.fr.debian.org/debian/ sid/main r-base-dev all 2.15.0-1 [3900 B]
-
-Extracting templates from packages: 63%
-Extracting templates from packages: 100%
+
Extracting templates from packages: 44%
Extracting templates from packages: 88%
Extracting templates from packages: 100%
Preconfiguring packages ...
-Fetched 21.6 MB in 45s (469 kB/s)
-Selecting previously unselected package libpixman-1-0.
-(Reading database ... 16833 files and directories currently installed.)
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.4-1_hurd-i386.deb) ...
-Selecting previously unselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.7-1_hurd-i386.deb) ...
-Selecting previously unselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_hurd-i386.deb) ...
-Selecting previously unselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.8.1-1_hurd-i386.deb) ...
-Selecting previously unselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
-Selecting previously unselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4_hurd-i386.deb) ...
-Selecting previously unselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.8.1-1_hurd-i386.deb) ...
-Selecting previously unselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.8.1-1_hurd-i386.deb) ...
-Selecting previously unselected package libxrender1.
-Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_hurd-i386.deb) ...
-Selecting previously unselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.12.0-2_hurd-i386.deb) ...
-Selecting previously unselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.5-3_hurd-i386.deb) ...
+Authentication warning overridden.
+Selecting previously unselected package libasprintf0c2:hurd-i386.
+(Reading database ... 18280 files and directories currently installed.)
+Unpacking libasprintf0c2:hurd-i386 (from .../libasprintf0c2_0.18.1.1-10_hurd-i386.deb) ...
+Selecting previously unselected package libmagic1:hurd-i386.
+Unpacking libmagic1:hurd-i386 (from .../libmagic1_1%3a5.14-1_hurd-i386.deb) ...
+Selecting previously unselected package libexpat1:hurd-i386.
+Unpacking libexpat1:hurd-i386 (from .../libexpat1_2.1.0-3_hurd-i386.deb) ...
+Selecting previously unselected package libfreetype6:hurd-i386.
+Unpacking libfreetype6:hurd-i386 (from .../libfreetype6_2.4.9-1.1_hurd-i386.deb) ...
+Selecting previously unselected package ucf.
+Moving old data out of the way
+Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ...
+Selecting previously unselected package fonts-dejavu-core.
+Unpacking fonts-dejavu-core (from .../fonts-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ...
+Selecting previously unselected package libfontconfig1:hurd-i386.
+Unpacking libfontconfig1:hurd-i386 (from .../libfontconfig1_2.9.0-7.1_hurd-i386.deb) ...
+Selecting previously unselected package libpixman-1-0:hurd-i386.
+Unpacking libpixman-1-0:hurd-i386 (from .../libpixman-1-0_0.26.0-4_hurd-i386.deb) ...
+Selecting previously unselected package libxcb-render0:hurd-i386.
+Unpacking libxcb-render0:hurd-i386 (from .../libxcb-render0_1.8.1-2_hurd-i386.deb) ...
+Selecting previously unselected package libxcb-shm0:hurd-i386.
+Unpacking libxcb-shm0:hurd-i386 (from .../libxcb-shm0_1.8.1-2_hurd-i386.deb) ...
+Selecting previously unselected package libxext6:hurd-i386.
+Unpacking libxext6:hurd-i386 (from .../libxext6_2%3a1.3.1-2+b1_hurd-i386.deb) ...
+Selecting previously unselected package libxrender1:hurd-i386.
+Unpacking libxrender1:hurd-i386 (from .../libxrender1_1%3a0.9.7-1+b2_hurd-i386.deb) ...
+Selecting previously unselected package libcairo2:hurd-i386.
+Unpacking libcairo2:hurd-i386 (from .../libcairo2_1.12.14-4_hurd-i386.deb) ...
+Selecting previously unselected package libcroco3:hurd-i386.
+Unpacking libcroco3:hurd-i386 (from .../libcroco3_0.6.8-2_hurd-i386.deb) ...
+Selecting previously unselected package libdatrie1:hurd-i386.
+Unpacking libdatrie1:hurd-i386 (from .../libdatrie1_0.2.6-2_hurd-i386.deb) ...
+Selecting previously unselected package libunistring0:hurd-i386.
+Unpacking libunistring0:hurd-i386 (from .../libunistring0_0.9.3-5+b1_hurd-i386.deb) ...
+Selecting previously unselected package libgettextpo0:hurd-i386.
+Unpacking libgettextpo0:hurd-i386 (from .../libgettextpo0_0.18.1.1-10_hurd-i386.deb) ...
+Selecting previously unselected package libgfortran3:hurd-i386.
+Unpacking libgfortran3:hurd-i386 (from .../libgfortran3_4.8.0-7_hurd-i386.deb) ...
Selecting previously unselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
-Selecting previously unselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.8-2_hurd-i386.deb) ...
-Selecting previously unselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8d-1_hurd-i386.deb) ...
+Unpacking x11-common (from .../x11-common_1%3a7.7+2_all.deb) ...
+Selecting previously unselected package libice6:hurd-i386.
+Unpacking libice6:hurd-i386 (from .../libice6_2%3a1.0.8-2+b1_hurd-i386.deb) ...
+Selecting previously unselected package libjpeg8:hurd-i386.
+Unpacking libjpeg8:hurd-i386 (from .../libjpeg8_8d-1+b1_hurd-i386.deb) ...
Selecting previously unselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.17-1_all.deb) ...
-Selecting previously unselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.17-1_hurd-i386.deb) ...
-Selecting previously unselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-3_hurd-i386.deb) ...
-Selecting previously unselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.30.0-1_hurd-i386.deb) ...
-Selecting previously unselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_1%3a8.30-4_hurd-i386.deb) ...
-Selecting previously unselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.1-2_hurd-i386.deb) ...
-Selecting previously unselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.6-2_hurd-i386.deb) ...
-Selecting previously unselected package libxext6.
-Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_hurd-i386.deb) ...
-Selecting previously unselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_hurd-i386.deb) ...
-Selecting previously unselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_hurd-i386.deb) ...
+Unpacking libthai-data (from .../libthai-data_0.1.19-2_all.deb) ...
+Selecting previously unselected package libthai0:hurd-i386.
+Unpacking libthai0:hurd-i386 (from .../libthai0_0.1.19-2_hurd-i386.deb) ...
+Selecting previously unselected package libxft2:hurd-i386.
+Unpacking libxft2:hurd-i386 (from .../libxft2_2.3.1-1_hurd-i386.deb) ...
+Selecting previously unselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_hurd-i386.deb) ...
+Selecting previously unselected package libpango1.0-0:hurd-i386.
+Unpacking libpango1.0-0:hurd-i386 (from .../libpango1.0-0_1.30.0-1+b2_hurd-i386.deb) ...
+Selecting previously unselected package libpaper1:hurd-i386.
+Unpacking libpaper1:hurd-i386 (from .../libpaper1_1.1.24+nmu2_hurd-i386.deb) ...
+Selecting previously unselected package libpcrecpp0:hurd-i386.
+Unpacking libpcrecpp0:hurd-i386 (from .../libpcrecpp0_1%3a8.31-2_hurd-i386.deb) ...
+Selecting previously unselected package libsm6:hurd-i386.
+Unpacking libsm6:hurd-i386 (from .../libsm6_2%3a1.2.1-2+b1_hurd-i386.deb) ...
+Selecting previously unselected package libjbig0:hurd-i386.
+Unpacking libjbig0:hurd-i386 (from .../libjbig0_2.0-2+b1_hurd-i386.deb) ...
+Selecting previously unselected package libtiff5:hurd-i386.
+Unpacking libtiff5:hurd-i386 (from .../libtiff5_4.0.2-6_hurd-i386.deb) ...
+Selecting previously unselected package libxss1:hurd-i386.
+Unpacking libxss1:hurd-i386 (from .../libxss1_1%3a1.2.2-1+b1_hurd-i386.deb) ...
+Selecting previously unselected package libxt6:hurd-i386.
+Unpacking libxt6:hurd-i386 (from .../libxt6_1%3a1.1.3-1+b1_hurd-i386.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_1%3a5.14-1_hurd-i386.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_hurd-i386.deb) ...
Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.109_all.deb) ...
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-Selecting previously unselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_hurd-i386.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
+Selecting previously unselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15+b2_hurd-i386.deb) ...
+Selecting previously unselected package libasprintf-dev:hurd-i386.
+Unpacking libasprintf-dev:hurd-i386 (from .../libasprintf-dev_0.18.1.1-10_hurd-i386.deb) ...
+Selecting previously unselected package libgettextpo-dev:hurd-i386.
+Unpacking libgettextpo-dev:hurd-i386 (from .../libgettextpo-dev_0.18.1.1-10_hurd-i386.deb) ...
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-10_hurd-i386.deb) ...
+Selecting previously unselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously unselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_9.20130516_all.deb) ...
+Selecting previously unselected package libgfortran-4.7-dev:hurd-i386.
+Unpacking libgfortran-4.7-dev:hurd-i386 (from .../libgfortran-4.7-dev_4.7.3-4_hurd-i386.deb) ...
+Selecting previously unselected package gfortran-4.7.
+Unpacking gfortran-4.7 (from .../gfortran-4.7_4.7.3-4_hurd-i386.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.7.2-1_hurd-i386.deb) ...
+Selecting previously unselected package libblas3.
+Unpacking libblas3 (from .../libblas3_1.2.20110419-5_hurd-i386.deb) ...
Selecting previously unselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_hurd-i386.deb) ...
-Selecting previously unselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.6-1_hurd-i386.deb) ...
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-Unpacking libjpeg8-dev (from .../libjpeg8-dev_8d-1_hurd-i386.deb) ...
-Selecting previously unselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_hurd-i386.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_hurd-i386.deb) ...
+Selecting previously unselected package libbz2-dev:hurd-i386.
+Unpacking libbz2-dev:hurd-i386 (from .../libbz2-dev_1.0.6-4_hurd-i386.deb) ...
+Selecting previously unselected package libjpeg8-dev:hurd-i386.
+Unpacking libjpeg8-dev:hurd-i386 (from .../libjpeg8-dev_8d-1+b1_hurd-i386.deb) ...
+Selecting previously unselected package liblapack3.
+Unpacking liblapack3 (from .../liblapack3_3.4.1-6_hurd-i386.deb) ...
Selecting previously unselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_hurd-i386.deb) ...
-Selecting previously unselected package libtinfo-dev.
-Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-6_hurd-i386.deb) ...
-Selecting previously unselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-6_hurd-i386.deb) ...
-Selecting previously unselected package libpaper1.
-Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_hurd-i386.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.4.1-6_hurd-i386.deb) ...
+Selecting previously unselected package libtinfo-dev:hurd-i386.
+Unpacking libtinfo-dev:hurd-i386 (from .../libtinfo-dev_5.9+20130504-1_hurd-i386.deb) ...
+Selecting previously unselected package libncurses5-dev:hurd-i386.
+Unpacking libncurses5-dev:hurd-i386 (from .../libncurses5-dev_5.9+20130504-1_hurd-i386.deb) ...
Selecting previously unselected package libpaper-utils.
-Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_hurd-i386.deb) ...
-Selecting previously unselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_1%3a8.30-4_hurd-i386.deb) ...
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_hurd-i386.deb) ...
+Selecting previously unselected package libpcre3-dev:hurd-i386.
+Unpacking libpcre3-dev:hurd-i386 (from .../libpcre3-dev_1%3a8.31-2_hurd-i386.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-1_hurd-i386.deb) ...
-Selecting previously unselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-8_hurd-i386.deb) ...
-Selecting previously unselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-8_hurd-i386.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_hurd-i386.deb) ...
+Selecting previously unselected package libreadline6-dev:hurd-i386.
+Unpacking libreadline6-dev:hurd-i386 (from .../libreadline6-dev_6.2+dfsg-0.1_hurd-i386.deb) ...
+Selecting previously unselected package libreadline-dev:hurd-i386.
+Unpacking libreadline-dev:hurd-i386 (from .../libreadline-dev_6.2+dfsg-0.1_hurd-i386.deb) ...
Selecting previously unselected package zip.
-Unpacking zip (from .../zip_3.0-4_hurd-i386.deb) ...
+Unpacking zip (from .../zip_3.0-7_hurd-i386.deb) ...
Selecting previously unselected package unzip.
-Unpacking unzip (from .../unzip_6.0-6_hurd-i386.deb) ...
+Unpacking unzip (from .../unzip_6.0-9_hurd-i386.deb) ...
Selecting previously unselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-6_all.deb) ...
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
Selecting previously unselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_hurd-i386.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_hurd-i386.deb) ...
Selecting previously unselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.11-1_hurd-i386.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_hurd-i386.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.15.0-1_hurd-i386.deb) ...
+Unpacking r-base-core (from .../r-base-core_3.0.1~20130512-1_hurd-i386.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.15.0-1_all.deb) ...
+Unpacking r-base-dev (from .../r-base-dev_3.0.1~20130512-1_all.deb) ...
Processing triggers for man-db ...
Processing triggers for install-info ...
-Setting up libpixman-1-0 (0.24.4-1) ...
-Setting up libxau6 (1:1.0.7-1) ...
-Setting up libxdmcp6 (1:1.1.0-4) ...
-Setting up libxcb1 (1.8.1-1) ...
-Setting up libx11-data (2:1.4.4-4) ...
-Setting up libx11-6 (2:1.4.4-4) ...
-Setting up libxcb-render0 (1.8.1-1) ...
-Setting up libxcb-shm0 (1.8.1-1) ...
-Setting up libxrender1 (1:0.9.6-2) ...
-Setting up libcairo2 (1.12.0-2) ...
-Setting up libdatrie1 (0.2.5-3) ...
-Setting up x11-common (1:7.6+12) ...
+Setting up libasprintf0c2:hurd-i386 (0.18.1.1-10) ...
+Setting up libmagic1:hurd-i386 (1:5.14-1) ...
+Setting up libexpat1:hurd-i386 (2.1.0-3) ...
+Setting up libfreetype6:hurd-i386 (2.4.9-1.1) ...
+Setting up ucf (3.0025+nmu3) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:hurd-i386 (2.9.0-7.1) ...
+Setting up libpixman-1-0:hurd-i386 (0.26.0-4) ...
+Setting up libxcb-render0:hurd-i386 (1.8.1-2) ...
+Setting up libxcb-shm0:hurd-i386 (1.8.1-2) ...
+Setting up libxext6:hurd-i386 (2:1.3.1-2+b1) ...
+Setting up libxrender1:hurd-i386 (1:0.9.7-1+b2) ...
+Setting up libcairo2:hurd-i386 (1.12.14-4) ...
+Setting up libcroco3:hurd-i386 (0.6.8-2) ...
+Setting up libdatrie1:hurd-i386 (0.2.6-2) ...
+Setting up libunistring0:hurd-i386 (0.9.3-5+b1) ...
+Setting up libgettextpo0:hurd-i386 (0.18.1.1-10) ...
+Setting up libgfortran3:hurd-i386 (4.8.0-7) ...
+Setting up x11-common (1:7.7+2) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6 (2:1.0.8-2) ...
-Setting up libjpeg8 (8d-1) ...
-Setting up libthai-data (0.1.17-1) ...
-Setting up libthai0 (0.1.17-1) ...
-Setting up libxft2 (2.2.0-3) ...
-Setting up libpango1.0-0 (1.30.0-1) ...
-Setting up libpcrecpp0 (1:8.30-4) ...
-Setting up libsm6 (2:1.2.1-2) ...
-Setting up libtiff4 (3.9.6-2) ...
-Setting up libxext6 (2:1.3.0-3) ...
-Setting up libxss1 (1:1.2.1-2) ...
-Setting up libxt6 (1:1.1.1-2) ...
-Setting up cdbs (0.4.109) ...
-Setting up dpatch (2.0.35) ...
-Setting up libblas3gf (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.6-1) ...
-Setting up libjpeg8-dev (8d-1) ...
-Setting up liblapack3gf (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev (5.9-6) ...
-Setting up libncurses5-dev (5.9-6) ...
-Setting up libpaper1 (1.1.24+nmu1) ...
+Setting up libice6:hurd-i386 (2:1.0.8-2+b1) ...
+Setting up libjpeg8:hurd-i386 (8d-1+b1) ...
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:hurd-i386 (0.1.19-2) ...
+Setting up libxft2:hurd-i386 (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
+Regenerating fonts cache... done.
+Setting up libpango1.0-0:hurd-i386 (1.30.0-1+b2) ...
+Setting up libpaper1:hurd-i386 (1.1.24+nmu2) ...
Creating config file /etc/papersize with new version
-Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcre3-dev (1:8.30-4) ...
-Setting up libpng12-dev (1.2.49-1) ...
-Setting up libreadline6-dev (6.2-8) ...
-Setting up libreadline-dev (6.2-8) ...
-Setting up zip (3.0-4) ...
-Setting up unzip (6.0-6) ...
-Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
-Setting up tcl8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.15.0-1) ...
-Setting R_PAPERSIZE_USER default to 'a4'
+Setting up libpcrecpp0:hurd-i386 (1:8.31-2) ...
+Setting up libsm6:hurd-i386 (2:1.2.1-2+b1) ...
+Setting up libjbig0:hurd-i386 (2.0-2+b1) ...
+Setting up libtiff5:hurd-i386 (4.0.2-6) ...
+Setting up libxss1:hurd-i386 (1:1.2.2-1+b1) ...
+Setting up libxt6:hurd-i386 (1:1.1.3-1+b1) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
+Setting up html2text (1.3.2a-15+b2) ...
+Setting up libasprintf-dev:hurd-i386 (0.18.1.1-10) ...
+Setting up libgettextpo-dev:hurd-i386 (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20130516) ...
+Setting up libgfortran-4.7-dev:hurd-i386 (4.7.3-4) ...
+Setting up gfortran-4.7 (4.7.3-4) ...
+Setting up gfortran (4:4.7.2-1) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:hurd-i386 (1.0.6-4) ...
+Setting up libjpeg8-dev:hurd-i386 (8d-1+b1) ...
+Setting up liblapack3 (3.4.1-6) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.1-6) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:hurd-i386 (5.9+20130504-1) ...
+Setting up libncurses5-dev:hurd-i386 (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:hurd-i386 (1:8.31-2) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:hurd-i386 (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:hurd-i386 (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.1~20130512-1) ...
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.15.0-1) ...
+Setting up r-base-dev (3.0.1~20130512-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
- libcwidget3 libsigc++-2.0-0c2a libboost-iostreams1.46.1
- libboost-iostreams1.48.0 libboost-iostreams1.49.0 libsysfs2 libusb-0.1-4p
+ gcc-4.6-base libboost-iostreams1.49.0
Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 89 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 25 not upgraded.
Checking correctness of dependencies...
Kernel: GNU 0.3 hurd-i386 (i686-AT386)
-Toolchain package versions: binutils_2.22-5+hurd.1 dpkg-dev_1.16.1.1 g++-4.5_4.5.3-9 g++-4.6_4.6.3-1+hurd.2 gcc-4.4_4.4.6-14 gcc-4.5_4.5.3-9 gcc-4.6_4.6.3-1+hurd.2 gnumach-dev_2:1.3.99.dfsg.git20111010-1 hurd-dev_20111206-1 libc0.3-dev_2.13-27 libstdc++6_4.7.0-3 libstdc++6-4.5-dev_4.5.3-9 libstdc++6-4.6-dev_4.6.3-1+hurd.2
-Package versions: adduser_3.113 apt_0.8.15.9 apt-utils_0.8.15.9 autopoint_0.18.1.1-5 base-files_6.5 base-passwd_3.5.23 bash_4.1-3+hurd.1 binutils_2.22-5+hurd.1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.6-1 ca-certificates_20120212 cdbs_0.4.109 coreutils_8.13-3 cpio_2.11-7 cpp_4:4.6.2-4 cpp-4.4_4.4.6-14 cpp-4.5_4.5.3-9 cpp-4.6_4.6.3-1+hurd.2 cron_3.0pl1-120 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_9.20120312 debian-archive-keyring_2010.08.28 debian-ports-archive-keyring_2012.01.08 debianutils_4.0.4 deborphan_1.7.28.5 dialog_1.1-20111020-1 diffutils_1:3.2-1 dpatch_2.0.35 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42.1-2 e2fsprogs_1.42.1-2 fakeroot_1.18.1-1+hurd.1 file_5.11-1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3.1 g++_4:4.6.1-3 g++-4.5_4.5.3-9 g++-4.6_4.6.3-1+hurd.2 gawk_1:3.1.8+dfsg-0.1 gcc_4:4.6.2-4 gcc-4.4_4.4.6-14 gcc-4.4-base_4.4.6-14 gcc-4.5_4.5.3-9 gcc-4.5-base_4.5.3-9 gcc-4.6_4.6.3-1+hurd.2 gcc-4.6-base_4.6.3-1+hurd.2 gcc-4.7-base_4.7.0-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.3-1+hurd.2 git_1:1.7.9.1-1 git-man_1:1.7.9.1-1 gnumach-dev_2:1.3.99.dfsg.git20111010-1 gnupg_1.4.11-3 gobjc-4.4_4.4.6-14 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-7 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15+b1 hurd_20111206-1 hurd-dev_20111206-1 initscripts_2.88dsf-13.13 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-8 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libapt-pkg-dev_0.8.15.9 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-4 libboost-iostreams1.46.1_1.46.1-8 libboost-iostreams1.48.0_1.48.0-3 libboost-iostreams1.49.0_1.49.0-2 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-27 libc-dev-bin_2.13-27 libc0.3_2.13-27 libc0.3-dev_2.13-27 libc0.3-xen_2.13-27 libcairo2_1.12.0-2 libclass-isa-perl_0.36-2 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libcurl3-gnutls_7.25.0-1 libcwidget3_0.5.16-3.1 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.1 libelfg0_0.8.13-3 libept-dev_1.0.5 libept1_1.0.5 liberror-perl_0.17-1 libexpat1_2.1.0-1 libffi5_3.0.10-3 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-3 libgcrypt11_1.5.0-3 libgdbm3_1.8.3-10 libgfortran3_4.7.0-3 libglib2.0-0_2.32.0-4 libglib2.0-data_2.28.8-1 libgmp10_2:5.0.4+dfsg-1 libgnutls26_2.12.18-1 libgomp1_4.7.0-3 libgpg-error0_1.10-3 libice6_2:1.0.8-2 libidn11_1.24-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 libldap-2.4-2_2.4.28-1.1 liblocale-gettext-perl_1.05-7+b1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-6 libncurses5-dev_5.9-6 libncursesw5_5.9-6 libobjc2_4.5.3-9 libp11-kit0_0.12-2 libpam-modules_1.1.3-5 libpam-modules-bin_1.1.3-5 libpam-runtime_1.1.3-5 libpam0g_1.1.3-7 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libparted0debian1_2.3-3+hurd.1 libpcre3_1:8.30-4 libpcre3-dev_1:8.30-4 libpcrecpp0_1:8.30-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.49-1 libpng12-dev_1.2.49-1 libpopt0_1.16-3 libpthread-stubs0_0.3-2.1+hurd.1 libpthread-stubs0-dev_0.3-2.1+hurd.1 libquadmath0_4.7.0-3 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 librtmp0_2.4+20111222.git4e06e21-1 libsasl2-2_2.1.25.dfsg1-4 libsasl2-modules_2.1.25.dfsg1-4 libsigc++-2.0-0c2a_2.2.10-0.1 libsigsegv2_2.9-4 libslang2_2.2.4-7 libsm6_2:1.2.1-2 libss2_1.42.1-2 libssh2-1_1.4.1-1 libssl0.9.8_0.9.8o-7+b1 libssl1.0.0_1.0.1-4 libstdc++6_4.7.0-3 libstdc++6-4.5-dev_4.5.3-9 libstdc++6-4.6-dev_4.6.3-1+hurd.2 libswitch-perl_2.16-2 libsysfs2_2.1.0+repack-1 libtagcoll2-dev_2.0.13-1 libtasn1-3_2.12-1 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-4+b1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-6 libtinfo5_5.9-6 libunistring0_0.9.3-5 libusb-0.1-4p_2:0.1.12-13+hurd.1 libuuid1_2.20.1-4 libwibble-dev_0.1.26-1 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxapian-dev_1.2.7-1 libxapian22_1.2.7-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-16 multiarch-support_2.13-21 ncurses-base_5.9-4 ncurses-bin_5.9-6 netbase_4.47 openssl_1.0.1-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 pkg-config_0.26-1 po-debconf_1.0.16+nmu1 procps_1:3.2.8-11 psmisc_22.16-1+hurd.1 r-base-core_2.15.0-1 r-base-dev_2.15.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sgml-base_1.26+nmu1 shared-mime-info_0.90-1 sudo_1.7.2p7-1 sysv-rc_2.88dsf-13.13 sysvinit_2.88dsf-13.13 sysvinit-utils_2.88dsf-13.13 tar_1.26-2 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 type-handling_0.2.23 tzdata_2011n-1 ucf_3.0025+nmu2 unzip_6.0-6 util-linux_2.19.1-5 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xml-core_0.13 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-1 zlib1g-dev_1:1.2.6.dfsg-1
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.7_4.7.3-4 gcc-4.7_4.7.3-4 gnumach-dev_2:1.3.99.dfsg.git20130501-1 hurd-dev_20130226-1 libc0.3-dev_2.13-38 libstdc++6_4.8.0-7 libstdc++6-4.7-dev_4.7.3-4
+Package versions: adduser_3.113+nmu3 apt_0.9.7.8 apt-utils_0.9.7.8 base-files_7.1 base-passwd_3.5.26 bash_4.2+dfsg-1 bash-completion_1:2.0-1 binutils_2.22-8 bsdmainutils_9.0.4 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.13-3.2 cpio_2.11+dfsg-0.1 cpp_4:4.7.2-1 cpp-4.7_4.7.3-4 cron_3.0pl1-124 dash_0.5.7-3+b1 debconf_1.5.49 debfoster_2.7-1.2 debhelper_9.20130516 debian-archive-keyring_2012.4 debian-ports-archive-keyring_2012.12.30 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-1 findutils_4.4.2-5 fontconfig_2.9.0-7.1 fontconfig-config_2.9.0-7.1 fonts-dejavu-core_2.33+svn2514-3 g++_4:4.7.2-1 g++-4.7_4.7.3-4 gawk_1:4.0.1+dfsg-2.1 gcc_4:4.7.2-1 gcc-4.5-base_4.5.3-12+b1 gcc-4.6-base_4.6.4-2 gcc-4.7_4.7.3-4 gcc-4.7-base_4.7.3-4 gcc-4.8-base_4.8.0-7 gettext_0.18.1.1-10 gettext-base_0.18.1.1-10 gfortran_4:4.7.2-1 gfortran-4.7_4.7.3-4 gnumach-dev_2:1.3.99.dfsg.git20130501-1 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.14-1 groff-base_1.22.2-2 gzip_1.5-1.1 hostname_3.12 html2text_1.3.2a-15+b2 hurd_20130226-1 hurd-dev_20130226-1 initscripts_2.88dsf-41 insserv_1.14.0-5 install-info_4.13a.dfsg.1-10+b1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-inst1.5_0.9.7.8 libapt-pkg-dev_0.9.7.8 libapt-pkg4.12_0.9.7.8 libasprintf-dev_0.18.1.1-10 libasprintf0c2_0.18.1.1-10 libattr1_1:2.4.46-8 libblas-dev_1.2.20110419-5 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.3 libboost-iostreams1.49.0_1.49.0-4 libbz2-1.0_1.0.6-4 libbz2-dev_1.0.6-4 libc-bin_2.13-38 libc-dev-bin_2.13-38 libc0.3_2.13-38 libc0.3-dev_2.13-38 libc0.3-xen_2.13-38 libcairo2_1.12.14-4 libclass-isa-perl_0.36-5 libcomerr2_1.42.5-1.1 libcroco3_0.6.8-2 libdatrie1_0.2.6-2 libdb5.1_5.1.29-5+b1 libdpkg-perl_1.16.10 libept-dev_1.0.9 libept1.4.12_1.0.9 libexpat1_2.1.0-3 libffi5_3.0.10-3+b1 libfile-fcntllock-perl_0.14-2 libfontconfig1_2.9.0-7.1 libfreetype6_2.4.9-1.1 libgc1c2_1:7.1-9.1 libgcc-4.7-dev_4.7.3-4 libgcc1_1:4.8.0-7 libgcrypt11_1.5.0-5 libgdbm3_1.8.3-11 libgettextpo-dev_0.18.1.1-10 libgettextpo0_0.18.1.1-10 libgfortran-4.7-dev_4.7.3-4 libgfortran3_4.8.0-7 libglib2.0-0_2.36.1-2 libglib2.0-data_2.33.12+really2.32.4-5 libgmp10_2:5.0.5+dfsg-2 libgnutls26_2.12.20-4 libgomp1_4.8.0-7 libgpg-error0_1.10-3.1 libice6_2:1.0.8-2+b1 libjbig0_2.0-2+b1 libjpeg8_8d-1+b1 libjpeg8-dev_8d-1+b1 liblapack-dev_3.4.1-6 liblapack3_3.4.1-6 libldap-2.4-2_2.4.31-1 liblocale-gettext-perl_1.05-7+b2 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-1 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libncurses5_5.9+20130504-1 libncurses5-dev_5.9+20130504-1 libncursesw5_5.9+20130504-1 libp11-kit0_0.12-3+b1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpango1.0-0_1.30.0-1+b2 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libparted0debian1_2.3-12 libpciaccess0_0.13.1-2+b2 libpcre3_1:8.31-2 libpcre3-dev_1:8.31-2 libpcrecpp0_1:8.31-2 libpipeline1_1.2.3-1 libpixman-1-0_0.26.0-4 libpng12-0_1.2.49-4 libpng12-dev_1.2.49-4 libpopt0_1.16-7 libprocps0_1:3.3.4-2 libpthread-stubs0_0.3-3 libquadmath0_4.8.0-7 libreadline-dev_6.2+dfsg-0.1 libreadline6_6.2+dfsg-0.1 libreadline6-dev_6.2+dfsg-0.1 libsasl2-2_2.1.25.dfsg1-6 libsasl2-modules_2.1.25.dfsg1-6 libsigsegv2_2.9-4+b1 libslang2_2.2.4-15 libsm6_2:1.2.1-2+b1 libss2_1.42.5-1.1 libssl0.9.8_0.9.8o-7+b1 libssl1.0.0_1.0.1e-2 libstdc++6_4.8.0-7 libstdc++6-4.7-dev_4.7.3-4 libswitch-perl_2.16-2 libtagcoll2-dev_2.0.13-1.1+b1 libtasn1-3_2.13-2 libtext-charwidth-perl_0.04-7+b2 libtext-iconv-perl_1.7-5+b1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.19-2 libthai0_0.1.19-2 libtiff5_4.0.2-6 libtimedate-perl_1.2000-1 libtinfo-dev_5.9+20130504-1 libtinfo5_5.9+20130504-1 libunistring0_0.9.3-5+b1 libuuid1_2.20.1-5.3 libwibble-dev_0.1.28-1.1 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxapian-dev_1.2.12-2 libxapian22_1.2.12-2 libxau6_1:1.0.7-1+b1 libxcb-render0_1.8.1-2 libxcb-shm0_1.8.1-2 libxcb1_1.8.1-2 libxdmcp6_1:1.1.1-1+b1 libxext6_2:1.3.1-2+b1 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-7+nmu1 libxrender1_1:0.9.7-1+b2 libxss1_1:1.2.2-1+b1 libxt6_1:1.1.3-1+b1 lsb-base_4.1+Debian9 make_3.81-8.2+b1 man-db_2.6.3-3 mawk_1.3.3-17+b1 multiarch-support_2.13-38 ncurses-base_5.9-10 ncurses-bin_5.9+20130504-1 netbase_5.1 netdde_0.0.20121127-2 passwd_1:4.1.5.1-1 patch_2.6.1-3+b1 perl_5.14.2-18 perl-base_5.14.2-18 perl-modules_5.14.2-19 pkg-config_0.26-1+b1 po-debconf_1.0.16+nmu2 procps_1:3.3.4-2 psmisc_22.20-1 r-base-core_3.0.1~20130512-1 r-base-dev_3.0.1~20130512-1 readline-common_6.2+dfsg-0.1 sed_4.2.1-10 sensible-utils_0.0.7 sgml-base_1.26+nmu4 shared-mime-info_1.0-1+b1 sudo_1.7.2p7-1 sysv-rc_2.88dsf-41 sysvinit_2.88dsf-41 sysvinit-utils_2.88dsf-41 tar_1.26+dfsg-0.1 tcl8.5_8.5.11-2 tk8.5_8.5.11-2 ttf-dejavu-core_2.33+svn2514-3 tzdata_2013b-2 ucf_3.0025+nmu3 unzip_6.0-9 util-linux_2.20.1-5.3 x11-common_1:7.7+2 xdg-utils_1.1.0~rc1+git20111210-7 xkb-data_2.5.1-3 xml-core_0.13+nmu2 xz-utils_5.1.1alpha+20120614-2 zip_3.0-7 zlib1g_1:1.2.7.dfsg-13 zlib1g-dev_1:1.2.7.dfsg-13
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -399,12 +470,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Apr 12 02:45:32 2012 UTC using RSA key ID 2295D502
+gpgv: Signature made Thu May 16 14:46:42 2013 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.12.0~dfsg-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.12.0~dfsg
-dpkg-source: info: unpacking r-bioc-limma_3.12.0~dfsg.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.12.0~dfsg-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.16.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.16.3~dfsg
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg-1.debian.tar.gz
Check disc space
────────────────
@@ -414,27 +485,12 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.12.0~dfsg-1
- dpkg-source --before-build r-bioc-limma-3.12.0~dfsg
+dpkg-buildpackage: source version 3.16.3~dfsg-1
+ dpkg-source --before-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: host architecture hurd-i386
/usr/bin/fakeroot debian/rules clean
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
-/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-hurd-i386-Hr0sI3/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-hurd-i386-Hr0sI3/r-bioc-limma-3.12.0~dfsg'
-if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "reverse-patches" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-for dir in debian/patches ; do \
- rm -f $dir/*.log ; \
- done
dh_clean
rm -f debian/r-bioc-limma.substvars
rm -f debian/r-bioc-limma.*.debhelper
@@ -453,28 +509,11 @@ if test -d src; then \
find src -regex ".*\..*o" | \
xargs --no-run-if-empty -r rm; \
fi
- debian/rules build
rm -f config.log config.status
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+ debian/rules build-arch
+ /usr/bin/fakeroot debian/rules binary-arch
test -x debian/rules
mkdir -p "."
-/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-hurd-i386-Hr0sI3/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-hurd-i386-Hr0sI3/r-bioc-limma-3.12.0~dfsg'
-if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
- /usr/bin/fakeroot debian/rules binary-arch
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-hurd-i386-Hr0sI3/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-hurd-i386-Hr0sI3/r-bioc-limma-3.12.0~dfsg'
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
@@ -486,49 +525,54 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
install -d debian/r-bioc-limma/usr/lib/R/site-library
-echo "R:Depends=r-base-core (>= 2.15.0-1)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 3.0.1~20130512-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-hurd-i386-Hr0sI3/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-hurd-i386-NxeeQl/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-hurd-i386-Hr0sI3/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-hurd-i386-NxeeQl/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-hurd-i386-Hr0sI3/r-bioc-limma-3.12.0~dfsg/src'
-gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c normexp.c -o normexp.o
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-hurd-i386-NxeeQl/r-bioc-limma-3.16.3~dfsg/src'
+gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O2 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-hurd-i386-Hr0sI3/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-hurd-i386-Hr0sI3/r-bioc-limma-3.12.0~dfsg/src'
-installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-hurd-i386-Hr0sI3/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-hurd-i386-NxeeQl/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-hurd-i386-NxeeQl/r-bioc-limma-3.16.3~dfsg/src'
+installing to /build/buildd-r-bioc-limma_3.16.3~dfsg-1-hurd-i386-NxeeQl/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-hurd-i386-NxeeQl/r-bioc-limma-3.16.3~dfsg/src'
** R
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-hurd-i386-Hr0sI3/r-bioc-limma-3.12.0~dfsg/src'
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
- 'limma.Rnw'
** testing if installed package can be loaded
-
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.12.0~dfsg-1-hurd-i386-Hr0sI3/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-hurd-i386-Hr0sI3/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-hurd-i386-Hr0sI3/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.16.3~dfsg-1-hurd-i386-NxeeQl/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-hurd-i386-NxeeQl/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-hurd-i386-NxeeQl/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.12.0~dfsg-1-hurd-i386-Hr0sI3/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.16.3~dfsg-1-hurd-i386-NxeeQl/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-hurd-i386-Hr0sI3/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-hurd-i386-NxeeQl/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/CITATION
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/doc/*
dh_installdocs -pr-bioc-limma
install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-limma_3.16.3~dfsg-1-hurd-i386-NxeeQl/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/doc/r-bioc-limma \;
+ cp -a debian/README.test debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ chown -R 0:0 debian/r-bioc-limma/usr/share/doc
+ chmod -R go=rX debian/r-bioc-limma/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-limma/usr/share/doc
install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
@@ -560,9 +604,9 @@ dh_strip -pr-bioc-limma
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
cd debian/r-bioc-limma
- chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
- gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
- cd '/build/buildd-r-bioc-limma_3.12.0~dfsg-1-hurd-i386-Hr0sI3/r-bioc-limma-3.12.0~dfsg'
+ chmod a-x usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ gzip -9nf usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ cd '/build/buildd-r-bioc-limma_3.16.3~dfsg-1-hurd-i386-NxeeQl/r-bioc-limma-3.16.3~dfsg'
dh_fixperms -pr-bioc-limma
find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -587,67 +631,84 @@ dh_gencontrol -pr-bioc-limma
chmod 644 debian/r-bioc-limma/DEBIAN/control
chown 0:0 debian/r-bioc-limma/DEBIAN/control
dh_md5sums -pr-bioc-limma
- (cd debian/r-bioc-limma >/dev/null ; find . -type f ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ (cd debian/r-bioc-limma >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
chmod 644 debian/r-bioc-limma/DEBIAN/md5sums
chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
dpkg-deb --build debian/r-bioc-limma ..
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.12.0~dfsg-1_hurd-i386.deb'.
- dpkg-genchanges -B -mDebian GNU/Hurd Build Daemon <buildd_hurd-i386-mozart at buildd.debian.org> >../r-bioc-limma_3.12.0~dfsg-1_hurd-i386.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.16.3~dfsg-1_hurd-i386.deb'.
+ dpkg-genchanges -B -mDebian GNU/Hurd Build Daemon <buildd_hurd-i386-mozart at buildd.debian.org> >../r-bioc-limma_3.16.3~dfsg-1_hurd-i386.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.12.0~dfsg
+ dpkg-source --after-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120412-0528
+Build finished at 20130517-1254
-r-bioc-limma_3.12.0~dfsg-1_hurd-i386.changes:
+r-bioc-limma_3.16.3~dfsg-1_hurd-i386.changes:
Format: 1.8
-Date: Thu, 12 Apr 2012 11:40:40 +0900
+Date: Thu, 16 May 2013 15:16:13 +0200
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: hurd-i386
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
Distribution: sid
Urgency: low
Maintainer: Debian GNU/Hurd Build Daemon <buildd_hurd-i386-mozart at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.12.0~dfsg-1) unstable; urgency=low
+ r-bioc-limma (3.16.3~dfsg-1) unstable; urgency=low
.
[ Charles Plessy ]
- 2d3420e Imported Upstream version 3.12.0~dfsg
- 4bbb8e4 Document LIMMA's copyright as a whole.
+ ff8c6db Imported Upstream version 3.12.1~dfsg
+ b4f097e Effective license is GPL-2, without the '+', as R is GPL-2.
.
[ Andreas Tille ]
- 8a61a4c Obtain references from inst/CITATION
+ * Imported new upstream version 3.16.3~dfsg
+ * debian/control
+ - added myself to Uploaders
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - Fake normalisation as it is done by `cme fix dpkg-control`
+ (the command did actually no change - the control file was
+ brought into shape manually)
+ - Removed versioned dependency of r-base-dev
+ * debian/copyright:
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - checked new upstream version and bumped version number
+ - Add years to Copyright fields
+ * debian/rules: Remove executable flag from doc files
+ * debian/source/format: Add explicit source format specification
Checksums-Sha1:
- cdfa15c312a3bfa983829c591f4338c1d30b4f17 808620 r-bioc-limma_3.12.0~dfsg-1_hurd-i386.deb
+ 1ae90e6ac4c10ab0c2f4c122ae312bc9d98a9274 1616230 r-bioc-limma_3.16.3~dfsg-1_hurd-i386.deb
Checksums-Sha256:
- 3dd54f50effcbcee652006435bac6c70fe7e7d66a9a5c1253fac869edfaadc9b 808620 r-bioc-limma_3.12.0~dfsg-1_hurd-i386.deb
+ 81323254c575eefc383cc083be78daa19ef1613ac90e2661bb81a7d439a06a88 1616230 r-bioc-limma_3.16.3~dfsg-1_hurd-i386.deb
Files:
- 2ede441c8e31daaf866ebe3840a50a3b 808620 gnu-r optional r-bioc-limma_3.12.0~dfsg-1_hurd-i386.deb
+ 88518023dc1356c26dd8a582f54d1f8e 1616230 gnu-r optional r-bioc-limma_3.16.3~dfsg-1_hurd-i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.12.0~dfsg-1_hurd-i386.deb
+r-bioc-limma_3.16.3~dfsg-1_hurd-i386.deb
────────────────────────────────────────
new debian package, version 2.0.
- size 808620 bytes: control archive= 1547 bytes.
- 781 bytes, 16 lines control
- 2290 bytes, 30 lines md5sums
+ size 1616230 bytes: control archive= 1686 bytes.
+ 790 bytes, 16 lines control
+ 2621 bytes, 34 lines md5sums
Package: r-bioc-limma
- Version: 3.12.0~dfsg-1
+ Version: 3.16.3~dfsg-1
Architecture: hurd-i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 983
- Depends: libc0.3 (>= 2.2.6), r-base-core (>= 2.15.0-1)
+ Installed-Size: 1846
+ Depends: libc0.3 (>= 2.2.6), r-base-core (>= 3.0.1~20130512-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -659,51 +720,56 @@ r-bioc-limma_3.12.0~dfsg-1_hurd-i386.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2012-04-12 05:26 ./
-drwxr-xr-x root/root 0 2012-04-12 05:26 ./usr/
-drwxr-xr-x root/root 0 2012-04-12 05:25 ./usr/lib/
-drwxr-xr-x root/root 0 2012-04-12 05:25 ./usr/lib/R/
-drwxr-xr-x root/root 0 2012-04-12 05:26 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2012-04-12 05:26 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 1901 2012-04-12 05:25 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 958 2012-04-12 05:25 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2012-04-12 05:26 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 1048 2012-04-12 05:25 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 6157 2012-04-12 05:26 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5727 2012-04-12 05:26 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2943 2012-04-12 05:26 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 220 2012-04-12 05:26 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 521 2012-04-12 05:26 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
-drwxr-xr-x root/root 0 2012-04-12 05:27 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 8120 2012-04-12 05:27 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2012-04-12 05:26 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 383 2012-04-12 05:26 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 202049 2012-04-12 05:26 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3829 2012-04-12 05:26 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2012-04-12 05:26 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 91993 2012-04-12 05:25 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 673 2012-04-12 05:25 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 1711 2012-04-12 05:25 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 42743 2012-04-12 05:25 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 1230 2012-04-12 05:25 ./usr/lib/R/site-library/limma/CITATION
--rw-r--r-- root/root 3989 2012-04-12 05:25 ./usr/lib/R/site-library/limma/NEWS.Rd
-drwxr-xr-x root/root 0 2012-04-12 05:26 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1387 2012-04-12 05:26 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 473535 2012-04-12 05:26 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3348 2012-04-12 05:26 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 6317 2012-04-12 05:26 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 2431 2012-04-12 05:26 ./usr/lib/R/site-library/limma/help/aliases.rds
-drwxr-xr-x root/root 0 2012-04-12 05:26 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 35015 2012-04-12 05:26 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2012-04-12 05:26 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 9754 2012-04-12 05:26 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2012-04-12 05:26 ./usr/share/
-drwxr-xr-x root/root 0 2012-04-12 05:26 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-04-12 05:27 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 264 2012-04-12 05:22 ./usr/share/doc/r-bioc-limma/README.Debian
--rw-r--r-- root/root 2457 2012-04-12 05:22 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 27998 2012-03-30 22:32 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 683 2012-04-12 05:22 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2013-05-17 12:53 ./
+drwxr-xr-x root/root 0 2013-05-17 12:53 ./usr/
+drwxr-xr-x root/root 0 2013-05-17 12:52 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-17 12:52 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-17 12:53 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-17 12:53 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 2046 2013-05-17 12:52 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 979 2013-05-17 12:52 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2013-05-17 12:53 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 1060 2013-05-17 12:52 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 6375 2013-05-17 12:53 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5944 2013-05-17 12:53 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 3089 2013-05-17 12:53 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 219 2013-05-17 12:53 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 541 2013-05-17 12:53 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2013-05-17 12:53 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8132 2013-05-17 12:53 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2013-05-17 12:52 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 1056 2013-05-17 12:52 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 206554 2013-05-17 12:52 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 4116 2013-05-17 12:52 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2013-05-17 12:53 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 102936 2013-05-17 12:52 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 673 2013-05-17 12:52 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 1711 2013-05-17 12:52 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 45597 2013-05-17 12:52 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 806089 2013-05-17 12:52 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 963 2013-05-17 12:52 ./usr/lib/R/site-library/limma/CITATION
+-rw-r--r-- root/root 11214 2013-05-17 12:52 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2013-05-17 12:53 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1418 2013-05-17 12:53 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 495536 2013-05-17 12:53 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3423 2013-05-17 12:53 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6703 2013-05-17 12:53 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2567 2013-05-17 12:53 ./usr/lib/R/site-library/limma/help/aliases.rds
+drwxr-xr-x root/root 0 2013-05-17 12:53 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 37337 2013-05-17 12:53 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2013-05-17 12:53 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 10085 2013-05-17 12:53 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2013-05-17 12:53 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-17 12:53 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-17 12:53 ./usr/share/doc/r-bioc-limma/
+drwxr-xr-x root/root 0 2013-05-17 12:53 ./usr/share/doc/r-bioc-limma/tests/
+-rw-r--r-- root/root 2097 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.R.gz
+-rw-r--r-- root/root 14649 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save.gz
+-rw-r--r-- root/root 437 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.test
+-rw-r--r-- root/root 264 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 2605 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 31097 2013-05-02 00:02 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 1153 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -717,112 +783,141 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /home/buildd/build/chroot-sid/build/buildd-r-bioc-limma_3.12.0~dfsg-1-hurd-i386-Hr0sI3
+Purging /home/buildd/build/chroot-sid/build/buildd-r-bioc-limma_3.16.3~dfsg-1-hurd-i386-NxeeQl
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
- libcwidget3 libsigc++-2.0-0c2a libboost-iostreams1.46.1
- libboost-iostreams1.48.0 libboost-iostreams1.49.0 libsysfs2 libusb-0.1-4p
+ gcc-4.6-base libboost-iostreams1.49.0
Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 89 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 25 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
- libcwidget3 libsigc++-2.0-0c2a libboost-iostreams1.46.1
- libboost-iostreams1.48.0 libboost-iostreams1.49.0 libsysfs2 libusb-0.1-4p
+ gcc-4.6-base libboost-iostreams1.49.0
Use 'apt-get autoremove' to remove them.
The following packages will be REMOVED:
- cdbs* dpatch* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libdatrie1*
- libice6* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf*
+ cdbs* debhelper* file* fontconfig* fontconfig-config* fonts-dejavu-core*
+ gettext* gettext-base* gfortran* gfortran-4.7* html2text* intltool-debian*
+ libasprintf-dev* libasprintf0c2* libblas-dev* libblas3* libbz2-dev*
+ libcairo2* libcroco3* libdatrie1* libexpat1* libfontconfig1* libfreetype6*
+ libgettextpo-dev* libgettextpo0* libgfortran-4.7-dev* libgfortran3* libice6*
+ libjbig0* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3* libmagic1*
libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1* libpcre3-dev*
libpcrecpp0* libpixman-1-0* libpng12-dev* libreadline-dev* libreadline6-dev*
- libsm6* libthai-data* libthai0* libtiff4* libtinfo-dev* libx11-6*
- libx11-data* libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6*
- libxext6* libxft2* libxrender1* libxss1* libxt6* r-base-core* r-base-dev*
- tcl8.5* tk8.5* unzip* x11-common* xdg-utils* zip*
-0 upgraded, 0 newly installed, 47 to remove and 89 not upgraded.
-After this operation, 73.7 MB disk space will be freed.
-(Reading database ... 19378 files and directories currently installed.)
+ libsm6* libthai-data* libthai0* libtiff5* libtinfo-dev* libunistring0*
+ libxcb-render0* libxcb-shm0* libxext6* libxft2* libxrender1* libxss1*
+ libxt6* po-debconf* r-base-core* r-base-dev* tcl8.5* tk8.5* ttf-dejavu-core*
+ ucf* unzip* x11-common* xdg-utils* zip*
+0 upgraded, 0 newly installed, 68 to remove and 25 not upgraded.
+After this operation, 107 MB disk space will be freed.
+(Reading database ... 21348 files and directories currently installed.)
Removing r-base-dev ...
Removing cdbs ...
-Removing dpatch ...
-Purging configuration files for dpatch ...
-Removing liblapack-dev ...
-Removing libblas-dev ...
+Removing debhelper ...
+Removing file ...
Removing r-base-core ...
Purging configuration files for r-base-core ...
-dpkg: warning: while removing r-base-core, directory '/etc/R' not empty so not removed.
-Removing liblapack3gf ...
-Purging configuration files for liblapack3gf ...
-Removing libblas3gf ...
-Purging configuration files for libblas3gf ...
-Removing libbz2-dev ...
-Removing libpango1.0-0 ...
-Purging configuration files for libpango1.0-0 ...
-Removing libcairo2 ...
-Purging configuration files for libcairo2 ...
-Removing libthai0 ...
-Purging configuration files for libthai0 ...
-Removing libdatrie1 ...
-Purging configuration files for libdatrie1 ...
-Removing libxt6 ...
-Purging configuration files for libxt6 ...
-Removing libsm6 ...
-Purging configuration files for libsm6 ...
-Removing libice6 ...
-Purging configuration files for libice6 ...
-Removing libtiff4 ...
-Purging configuration files for libtiff4 ...
-Removing libjpeg8-dev ...
-Removing libjpeg8 ...
-Removing libncurses5-dev ...
+dpkg: warning: while removing r-base-core, directory '/etc/R' not empty so not removed
+Removing libpango1.0-0:hurd-i386 ...
+Purging configuration files for libpango1.0-0:hurd-i386 ...
+Removing fontconfig ...
+Purging configuration files for fontconfig ...
+Removing tk8.5 ...
+Purging configuration files for tk8.5 ...
+Removing libxft2:hurd-i386 ...
+Purging configuration files for libxft2:hurd-i386 ...
+Removing libcairo2:hurd-i386 ...
+Purging configuration files for libcairo2:hurd-i386 ...
+Removing libfontconfig1:hurd-i386 ...
+Purging configuration files for libfontconfig1:hurd-i386 ...
+Removing fontconfig-config ...
+Purging configuration files for fontconfig-config ...
+Removing ttf-dejavu-core ...
+Removing fonts-dejavu-core ...
+Purging configuration files for fonts-dejavu-core ...
+Removing po-debconf ...
+Removing intltool-debian ...
+Removing gettext ...
+Removing gettext-base ...
+Removing gfortran ...
+Removing gfortran-4.7 ...
+Removing html2text ...
+Purging configuration files for html2text ...
+Removing libasprintf-dev:hurd-i386 ...
+Removing libasprintf0c2:hurd-i386 ...
+Removing liblapack-dev ...
+Removing libblas-dev ...
+Removing liblapack3 ...
+Purging configuration files for liblapack3 ...
+Removing libblas3 ...
+Removing libbz2-dev:hurd-i386 ...
+Removing libcroco3:hurd-i386 ...
+Purging configuration files for libcroco3:hurd-i386 ...
+Removing libthai0:hurd-i386 ...
+Purging configuration files for libthai0:hurd-i386 ...
+Removing libdatrie1:hurd-i386 ...
+Purging configuration files for libdatrie1:hurd-i386 ...
+Removing libexpat1:hurd-i386 ...
+Purging configuration files for libexpat1:hurd-i386 ...
+Removing libfreetype6:hurd-i386 ...
+Purging configuration files for libfreetype6:hurd-i386 ...
+Removing libgettextpo-dev:hurd-i386 ...
+Removing libgettextpo0:hurd-i386 ...
+Removing libgfortran-4.7-dev:hurd-i386 ...
+Removing libgfortran3:hurd-i386 ...
+Purging configuration files for libgfortran3:hurd-i386 ...
+Removing libxt6:hurd-i386 ...
+Purging configuration files for libxt6:hurd-i386 ...
+Removing libsm6:hurd-i386 ...
+Purging configuration files for libsm6:hurd-i386 ...
+Removing libice6:hurd-i386 ...
+Purging configuration files for libice6:hurd-i386 ...
+Removing libtiff5:hurd-i386 ...
+Purging configuration files for libtiff5:hurd-i386 ...
+Removing libjbig0:hurd-i386 ...
+Purging configuration files for libjbig0:hurd-i386 ...
+Removing libjpeg8-dev:hurd-i386 ...
+Removing libjpeg8:hurd-i386 ...
+Removing libmagic1:hurd-i386 ...
+Purging configuration files for libmagic1:hurd-i386 ...
+Removing libncurses5-dev:hurd-i386 ...
Removing libpaper-utils ...
-Removing libpaper1 ...
-Purging configuration files for libpaper1 ...
-Removing libpcre3-dev ...
-Removing libpcrecpp0 ...
-Purging configuration files for libpcrecpp0 ...
-Removing libpixman-1-0 ...
-Purging configuration files for libpixman-1-0 ...
+Removing libpaper1:hurd-i386 ...
+Purging configuration files for libpaper1:hurd-i386 ...
+Removing libpcre3-dev:hurd-i386 ...
+Removing libpcrecpp0:hurd-i386 ...
+Purging configuration files for libpcrecpp0:hurd-i386 ...
+Removing libpixman-1-0:hurd-i386 ...
+Purging configuration files for libpixman-1-0:hurd-i386 ...
Removing libpng12-dev ...
-Removing libreadline-dev ...
-Removing libreadline6-dev ...
+Removing libreadline-dev:hurd-i386 ...
+Removing libreadline6-dev:hurd-i386 ...
Removing libthai-data ...
-Removing libtinfo-dev ...
-Removing tk8.5 ...
-Purging configuration files for tk8.5 ...
-Removing libxft2 ...
-Purging configuration files for libxft2 ...
-Removing libxss1 ...
-Purging configuration files for libxss1 ...
-Removing libxrender1 ...
-Purging configuration files for libxrender1 ...
-Removing libxext6 ...
-Purging configuration files for libxext6 ...
-Removing libx11-6 ...
-Purging configuration files for libx11-6 ...
-Removing libx11-data ...
-Removing libxcb-shm0 ...
-Purging configuration files for libxcb-shm0 ...
-Removing libxcb-render0 ...
-Purging configuration files for libxcb-render0 ...
-Removing libxcb1 ...
-Purging configuration files for libxcb1 ...
-Removing libxau6 ...
-Purging configuration files for libxau6 ...
-Removing libxdmcp6 ...
-Purging configuration files for libxdmcp6 ...
+Removing libtinfo-dev:hurd-i386 ...
+Removing libunistring0:hurd-i386 ...
+Purging configuration files for libunistring0:hurd-i386 ...
+Removing libxcb-render0:hurd-i386 ...
+Purging configuration files for libxcb-render0:hurd-i386 ...
+Removing libxcb-shm0:hurd-i386 ...
+Purging configuration files for libxcb-shm0:hurd-i386 ...
+Removing libxss1:hurd-i386 ...
+Purging configuration files for libxss1:hurd-i386 ...
+Removing libxext6:hurd-i386 ...
+Purging configuration files for libxext6:hurd-i386 ...
+Removing libxrender1:hurd-i386 ...
+Purging configuration files for libxrender1:hurd-i386 ...
Removing tcl8.5 ...
Purging configuration files for tcl8.5 ...
+Removing ucf ...
+Purging configuration files for ucf ...
Removing unzip ...
Purging configuration files for unzip ...
Removing x11-common ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of stop.
Purging configuration files for x11-common ...
-dpkg: warning: while removing x11-common, directory '/etc/X11' not empty so not removed.
Removing xdg-utils ...
Removing zip ...
Processing triggers for man-db ...
@@ -833,18 +928,17 @@ Processing triggers for install-info ...
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: hurd-i386
-Build-Space: 3268
-Build-Time: 309
+Build-Space: 5880
+Build-Time: 170
Distribution: sid
-Install-Time: 575
-Job: r-bioc-limma_3.12.0~dfsg-1
+Install-Time: 211
+Job: r-bioc-limma_3.16.3~dfsg-1
Package: r-bioc-limma
-Package-Time: 1232
-Source-Version: 3.12.0~dfsg-1
-Space: 3268
+Package-Time: 465
+Source-Version: 3.16.3~dfsg-1
+Space: 5880
Status: successful
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120412-0528
-Build needed 00:20:32, 3268k disc space
-
+Finished at 20130517-1254
+Build needed 00:07:45, 5880k disc space
diff --git a/i386.log b/i386.log
index 857b686..0128540 100644
--- a/i386.log
+++ b/i386.log
@@ -1,70 +1,60 @@
-From buildd at murphy.debian.org Thu Apr 12 03:32:40 2012
+From buildd at murphy.debian.org Thu May 16 15:43:36 2013
Return-path: <buildd at murphy.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+Received: from mailly.debian.org ([82.195.75.114])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
- by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ CN=mailly.debian.org, EMAIL=hostmaster at mailly.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:DHE_RSA_AES_128_CBC_SHA1:16)
(Exim 4.72) (envelope-from <buildd at murphy.debian.org>)
- id 1SIAm0-00075g-Nw
- for logs at buildd.debian.org; Thu, 12 Apr 2012 03:32:40 +0000
-Received: from murphy.debian.org ([70.103.162.31])
+ id 1Ud0LA-0004SJ-81
+ for logs at buildd.debian.org; Thu, 16 May 2013 15:43:36 +0000
+Received: from murphy.debian.org ([97.107.116.31])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=murphy.debian.org, EMAIL=hostmaster at murphy.debian.org (verified)
- by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at murphy.debian.org>)
- id 1SIAlz-0003Px-IU
- for logs at buildd.debian.org; Thu, 12 Apr 2012 03:32:39 +0000
+ by mailly.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:256)
+ (Exim 4.80) (envelope-from <buildd at murphy.debian.org>)
+ id 1Ud0L9-0000qH-43
+ for logs at buildd.debian.org; Thu, 16 May 2013 15:43:35 +0000
Received: from buildd by murphy.debian.org with local (Exim 4.72)
(envelope-from <buildd at murphy.debian.org>)
- id 1SIAlx-0002Dy-TT; Thu, 12 Apr 2012 03:32:37 +0000
-Message-Id: <E1SIAlx-0002Dy-TT at murphy.debian.org>
+ id 1Ud0Km-000299-Gc; Thu, 16 May 2013 15:43:12 +0000
+Message-Id: <E1Ud0Km-000299-Gc at murphy.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Thu, 12 Apr 2012 03:32:37 +0000
+Date: Thu, 16 May 2013 15:43:12 +0000
From: buildd on murphy <buildd at murphy.debian.org>
To: logs at buildd.debian.org,buildd-admin at murphy.debian.org
-Subject: Log for successful build of r-bioc-limma_3.12.0~dfsg-1 on i386
+Subject: Log for successful build of r-bioc-limma_3.16.3~dfsg-1 on i386
(dist=sid)
-Key-Id: 2B54027C
+Key-Id: 76D9491D
Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on murphy.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.12.0~dfsg-1 (i386) 12 Apr 2012 03:31 ║
+║ r-bioc-limma 3.16.3~dfsg-1 (i386) 16 May 2013 15:41 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.12.0~dfsg-1
-Source Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
+Source Version: 3.16.3~dfsg-1
Architecture: i386
-Hit http://incoming.debian.org sid InRelease
-Ign http://incoming.debian.org InRelease
-Hit http://ftp.us.debian.org sid InRelease
-Hit http://incoming.debian.org Release.gpg
-Hit http://incoming.debian.org sid/main Sources/DiffIndex
+Get:1 http://incoming.debian.org sid InRelease [205 kB]
+Get:2 http://ftp.us.debian.org sid InRelease [205 kB]
+Get:3 http://incoming.debian.org buildd-unstable InRelease [111 kB]
Hit http://ftp.us.debian.org sid/main Sources/DiffIndex
-Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
-Hit http://incoming.debian.org sid/main i386 Packages/DiffIndex
-Hit http://incoming.debian.org sid/contrib i386 Packages/DiffIndex
-Ign http://incoming.debian.org sid/contrib TranslationIndex
-Hit http://incoming.debian.org sid/main TranslationIndex
-Hit http://incoming.debian.org Release
-Hit http://incoming.debian.org sid/contrib Translation-en
+Get:4 http://incoming.debian.org unstable InRelease [205 kB]
Hit http://ftp.us.debian.org sid/contrib Sources/DiffIndex
+Hit http://incoming.debian.org sid/main i386 Packages/DiffIndex
Hit http://ftp.us.debian.org sid/main i386 Packages/DiffIndex
Hit http://ftp.us.debian.org sid/contrib i386 Packages/DiffIndex
-Ign http://ftp.us.debian.org sid/contrib TranslationIndex
-Get:1 http://ftp.us.debian.org sid/main TranslationIndex [2223 B]
-Hit http://incoming.debian.org sid/main Translation-en
-Hit http://incoming.debian.org Sources
-Hit http://incoming.debian.org Packages
-Get:2 http://ftp.us.debian.org sid/contrib Translation-en [37.0 kB]
-Ign http://incoming.debian.org Translation-en
-Get:3 http://ftp.us.debian.org sid/main Translation-en [3936 kB]
-Fetched 3975 kB in 17s (229 kB/s)
+Hit http://incoming.debian.org buildd-unstable/main Sources
+Hit http://incoming.debian.org buildd-unstable/contrib Sources
+Hit http://incoming.debian.org buildd-unstable/non-free Sources
+Hit http://incoming.debian.org buildd-unstable/main i386 Packages
+Hit http://incoming.debian.org unstable/main Sources/DiffIndex
+Hit http://incoming.debian.org unstable/contrib Sources/DiffIndex
+Fetched 725 kB in 4s (149 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -85,11 +75,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 288 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (dsc) [2030 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (tar) [283 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (diff) [3098 B]
-Fetched 288 kB in 1s (284 kB/s)
+Need to get 1058 kB of source archives.
+Get:1 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-bioc-limma 3.16.3~dfsg-1 (dsc) [1409 B]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-bioc-limma 3.16.3~dfsg-1 (tar) [1052 kB]
+Get:3 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-bioc-limma 3.16.3~dfsg-1 (diff) [4167 B]
+Fetched 1058 kB in 3s (331 kB/s)
Download complete and in download only mode
Check arch
@@ -102,368 +92,329 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.2-1)
+build-essential: already installed (11.6)
+fakeroot: already installed (1.18.4-2)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 8 not upgraded.
+The following packages were automatically installed and are no longer required:
+ libexpat1 libexpat1-dev libffi5 libmpc2 libncursesw5 libreadline5 libruby1.8
+ libruby1.9.1 libsqlite3-0 libssl-dev libssl1.0.0 libyaml-0-2 mime-support
+ ruby ruby1.8 ruby1.8-dev ruby1.9.1 ruby1.9.1-dev rubygems zlib1g-dev
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 8 not upgraded.
+The following packages were automatically installed and are no longer required:
+ libexpat1 libexpat1-dev libffi5 libmpc2 libncursesw5 libreadline5 libruby1.8
+ libruby1.9.1 libsqlite3-0 libssl-dev libssl1.0.0 libyaml-0-2 mime-support
+ ruby ruby1.8 ruby1.8-dev ruby1.9.1 ruby1.9.1-dev rubygems zlib1g-dev
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev
Checking for already installed dependencies...
-base-files: already installed (6.7)
-base-passwd: already installed (3.5.24)
-bash: already installed (4.2-2)
-coreutils: already installed (8.13-3.1)
+base-files: already installed (7.2)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2+dfsg-1)
+bsdutils: already installed (1:2.20.1-5.3)
+coreutils: already installed (8.13-3.3)
dash: already installed (0.5.7-3)
-debianutils: already installed (4.3)
-diffutils: already installed (1:3.2-2)
-dpkg: already installed (1.16.2)
-e2fsprogs: already installed (1.42.2-1)
-findutils: already installed (4.4.2-4)
-grep: already installed (2.10-1)
-gzip: already installed (1.4-5)
-hostname: already installed (3.11)
-ncurses-base: already installed (5.9-5)
-ncurses-bin: already installed (5.9-6)
-perl-base: already installed (5.14.2-9)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.5-1)
-sysvinit-utils: already installed (2.88dsf-22.1)
-sysvinit: already installed (2.88dsf-22.1)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-4)
-mount: already installed (2.20.1-4)
-util-linux: already installed (2.20.1-4)
-libc6-dev: already installed (2.13-27)
-gcc: already installed (4:4.6.3-4 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-4 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.2 >= 1.13.5 is satisfied)
-debhelper: missing
-Using default version 9.20120410
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1.1)
+findutils: already installed (4.4.2-5)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+libc-bin: already installed (2.17-1)
+login: already installed (1:4.1.5.1-1)
+mount: already installed (2.20.1-5.3)
+ncurses-base: already installed (5.9-10)
+ncurses-bin: already installed (5.9+20130504-1)
+perl-base: already installed (5.14.2-21)
+sed: already installed (4.2.2-1)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-5)
+util-linux: already installed (2.20.1-5.3)
+libc6-dev: already installed (2.17-1)
+gcc: already installed (4:4.7.2-1 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.7.2-1 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
+debhelper: already installed (9.20130509 >= 9 is satisfied)
cdbs: missing
r-base-dev: missing
-Using default version 2.15.0-1
Checking for dependency conflicts...
-Installing positive dependencies: debhelper cdbs r-base-dev
+Installing positive dependencies: cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
+The following packages were automatically installed and are no longer required:
+ libexpat1-dev libffi5 libmpc2 libncursesw5 libreadline5 libruby1.8
+ libruby1.9.1 libsqlite3-0 libssl-dev libssl1.0.0 libyaml-0-2 mime-support
+ ruby ruby1.8 ruby1.8-dev ruby1.9.1 ruby1.9.1-dev rubygems
+Use 'apt-get autoremove' to remove them.
The following extra packages will be installed:
- bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
- gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
- libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
- libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
- libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
- po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common
- xdg-utils zip zlib1g-dev
+ fontconfig fontconfig-config fonts-dejavu-core gfortran gfortran-4.7
+ libblas-dev libblas3 libcairo2 libdatrie1 libfontconfig1 libfreetype6
+ libgfortran-4.7-dev libgfortran3 libice6 libjbig0 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3 libncurses5-dev libpango1.0-0 libpaper-utils
+ libpaper1 libpcre3-dev libpcrecpp0 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff5
+ libtinfo-dev libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1
+ libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6 r-base-core tcl8.5
+ tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
Suggested packages:
- wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
- gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
- libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
- ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
- libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base
- texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
- texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
- texlive-latex-extra texinfo texi2html tclreadline gvfs-bin
+ devscripts gfortran-multilib gfortran-doc gfortran-4.7-multilib
+ gfortran-4.7-doc libgfortran3-dbg ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp ess r-doc-info r-doc-pdf r-mathlib r-base-html
+ texlive-base texlive-latex-base texlive-generic-recommended
+ texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
+ texlive-latex-recommended texlive-latex-extra texinfo texi2html
+ tcl-tclreadline gvfs-bin
Recommended packages:
- autotools-dev patchutils autopoint libglib2.0-data shared-mime-info xml-core
- libmail-sendmail-perl r-recommended r-doc-html xterm x-terminal-emulator
+ autotools-dev r-recommended r-doc-html xterm x-terminal-emulator
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
- bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
- libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libffi5 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
- libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
- libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
- po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core unzip
- x11-common xdg-utils zip zlib1g-dev
+ cdbs fontconfig fontconfig-config fonts-dejavu-core gfortran gfortran-4.7
+ libblas-dev libblas3 libcairo2 libdatrie1 libfontconfig1 libfreetype6
+ libgfortran-4.7-dev libgfortran3 libice6 libjbig0 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3 libncurses5-dev libpango1.0-0 libpaper-utils
+ libpaper1 libpcre3-dev libpcrecpp0 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff5
+ libtinfo-dev libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1
+ libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6 r-base-core r-base-dev
+ tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+0 upgraded, 58 newly installed, 0 to remove and 16 not upgraded.
+Need to get 21.3 MB/47.2 MB of archives.
+After this operation, 96.3 MB of additional disk space will be used.
+Get:1 http://incoming.debian.org/debian/ sid/main r-base-core i386 3.0.1-1 [21.3 MB]
+Get:2 http://incoming.debian.org/debian/ sid/main r-base-dev all 3.0.1-1 [3896 B]
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 76 newly installed, 0 to remove and 8 not upgraded.
-Need to get 0 B/55.9 MB of archives.
-After this operation, 118 MB of additional disk space will be used.
-Selecting previously unselected package libpipeline1:i386.
-(Reading database ... 11029 files and directories currently installed.)
-Unpacking libpipeline1:i386 (from .../libpipeline1_1.2.1-1_i386.deb) ...
-Selecting previously unselected package libmagic1:i386.
-Unpacking libmagic1:i386 (from .../libmagic1_5.11-1_i386.deb) ...
-Selecting previously unselected package libpcre3:i386.
-Unpacking libpcre3:i386 (from .../libpcre3_1%3a8.30-4_i386.deb) ...
-Selecting previously unselected package libexpat1:i386.
-Unpacking libexpat1:i386 (from .../libexpat1_2.1.0-1_i386.deb) ...
+Fetched 21.3 MB in 60s (349 kB/s)
Selecting previously unselected package libfreetype6:i386.
-Unpacking libfreetype6:i386 (from .../libfreetype6_2.4.9-1_i386.deb) ...
+(Reading database ... 16154 files and directories currently installed.)
+Unpacking libfreetype6:i386 (from .../libfreetype6_2.4.9-1.1_i386.deb) ...
+Selecting previously unselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ...
+Moving old data out of the way
+Selecting previously unselected package fonts-dejavu-core.
+Unpacking fonts-dejavu-core (from .../fonts-dejavu-core_2.33+svn2514-3_all.deb) ...
Selecting previously unselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33+svn2514-3_all.deb) ...
Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ...
Selecting previously unselected package libfontconfig1:i386.
-Unpacking libfontconfig1:i386 (from .../libfontconfig1_2.8.0-3.1_i386.deb) ...
+Unpacking libfontconfig1:i386 (from .../libfontconfig1_2.9.0-7.1_i386.deb) ...
Selecting previously unselected package libpixman-1-0:i386.
-Unpacking libpixman-1-0:i386 (from .../libpixman-1-0_0.24.4-1_i386.deb) ...
+Unpacking libpixman-1-0:i386 (from .../libpixman-1-0_0.26.0-4_i386.deb) ...
Selecting previously unselected package libpng12-0:i386.
-Unpacking libpng12-0:i386 (from .../libpng12-0_1.2.49-1_i386.deb) ...
+Unpacking libpng12-0:i386 (from .../libpng12-0_1.2.49-4_i386.deb) ...
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Unpacking libxau6:i386 (from .../libxau6_1%3a1.0.7-1_i386.deb) ...
Selecting previously unselected package libxdmcp6:i386.
-Unpacking libxdmcp6:i386 (from .../libxdmcp6_1%3a1.1.0-4_i386.deb) ...
+Unpacking libxdmcp6:i386 (from .../libxdmcp6_1%3a1.1.1-1_i386.deb) ...
Selecting previously unselected package libxcb1:i386.
-Unpacking libxcb1:i386 (from .../libxcb1_1.8.1-1_i386.deb) ...
+Unpacking libxcb1:i386 (from .../libxcb1_1.8.1-2_i386.deb) ...
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-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
+Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ...
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+Unpacking libx11-6:i386 (from .../libx11-6_2%3a1.5.0-1_i386.deb) ...
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+Unpacking libxcb-render0:i386 (from .../libxcb-render0_1.8.1-2_i386.deb) ...
Selecting previously unselected package libxcb-shm0:i386.
-Unpacking libxcb-shm0:i386 (from .../libxcb-shm0_1.8.1-1_i386.deb) ...
+Unpacking libxcb-shm0:i386 (from .../libxcb-shm0_1.8.1-2_i386.deb) ...
+Selecting previously unselected package libxext6:i386.
+Unpacking libxext6:i386 (from .../libxext6_2%3a1.3.1-2_i386.deb) ...
Selecting previously unselected package libxrender1:i386.
-Unpacking libxrender1:i386 (from .../libxrender1_1%3a0.9.6-2_i386.deb) ...
+Unpacking libxrender1:i386 (from .../libxrender1_1%3a0.9.7-1_i386.deb) ...
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-Unpacking libcairo2:i386 (from .../libcairo2_1.12.0-2_i386.deb) ...
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-Selecting previously unselected package libglib2.0-0:i386.
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-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-7_i386.deb) ...
-Selecting previously unselected package libcroco3:i386.
-Unpacking libcroco3:i386 (from .../libcroco3_0.6.5-1_i386.deb) ...
+Unpacking libcairo2:i386 (from .../libcairo2_1.12.14-4_i386.deb) ...
Selecting previously unselected package libdatrie1:i386.
-Unpacking libdatrie1:i386 (from .../libdatrie1_0.2.5-3_i386.deb) ...
+Unpacking libdatrie1:i386 (from .../libdatrie1_0.2.6-2_i386.deb) ...
Selecting previously unselected package libgfortran3:i386.
-Unpacking libgfortran3:i386 (from .../libgfortran3_4.7.0-3_i386.deb) ...
+Unpacking libgfortran3:i386 (from .../libgfortran3_4.8.0-7_i386.deb) ...
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-Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
+Unpacking x11-common (from .../x11-common_1%3a7.7+3_all.deb) ...
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Unpacking libice6:i386 (from .../libice6_2%3a1.0.8-2_i386.deb) ...
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-Unpacking libthai-data (from .../libthai-data_0.1.17-1_all.deb) ...
+Unpacking libthai-data (from .../libthai-data_0.1.19-2_all.deb) ...
Selecting previously unselected package libthai0:i386.
-Unpacking libthai0:i386 (from .../libthai0_0.1.17-1_i386.deb) ...
+Unpacking libthai0:i386 (from .../libthai0_0.1.19-2_i386.deb) ...
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-Unpacking libxft2:i386 (from .../libxft2_2.2.0-3_i386.deb) ...
+Unpacking libxft2:i386 (from .../libxft2_2.3.1-1_i386.deb) ...
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-Unpacking fontconfig (from .../fontconfig_2.8.0-3.1_i386.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_i386.deb) ...
Selecting previously unselected package libpango1.0-0:i386.
Unpacking libpango1.0-0:i386 (from .../libpango1.0-0_1.30.0-1_i386.deb) ...
+Selecting previously unselected package libpaper1:i386.
+Unpacking libpaper1:i386 (from .../libpaper1_1.1.24+nmu2_i386.deb) ...
Selecting previously unselected package libpcrecpp0:i386.
-Unpacking libpcrecpp0:i386 (from .../libpcrecpp0_1%3a8.30-4_i386.deb) ...
+Unpacking libpcrecpp0:i386 (from .../libpcrecpp0_1%3a8.31-2_i386.deb) ...
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Unpacking libsm6:i386 (from .../libsm6_2%3a1.2.1-2_i386.deb) ...
-Selecting previously unselected package libtiff4:i386.
-Unpacking libtiff4:i386 (from .../libtiff4_3.9.6-2_i386.deb) ...
-Selecting previously unselected package libunistring0:i386.
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-Selecting previously unselected package libxext6:i386.
-Unpacking libxext6:i386 (from .../libxext6_2%3a1.3.0-3_i386.deb) ...
+Selecting previously unselected package libjbig0:i386.
+Unpacking libjbig0:i386 (from .../libjbig0_2.0-2_i386.deb) ...
+Selecting previously unselected package libtiff5:i386.
+Unpacking libtiff5:i386 (from .../libtiff5_4.0.2-6_i386.deb) ...
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-Unpacking libxss1:i386 (from .../libxss1_1%3a1.2.1-2_i386.deb) ...
+Unpacking libxss1:i386 (from .../libxss1_1%3a1.2.2-1_i386.deb) ...
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-Unpacking libxt6:i386 (from .../libxt6_1%3a1.1.1-2_i386.deb) ...
-Selecting previously unselected package bsdmainutils.
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-Selecting previously unselected package groff-base.
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-Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_i386.deb) ...
+Unpacking libxt6:i386 (from .../libxt6_1%3a1.1.3-1_i386.deb) ...
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+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
+Selecting previously unselected package libgfortran-4.7-dev:i386.
+Unpacking libgfortran-4.7-dev:i386 (from .../libgfortran-4.7-dev_4.7.3-4_i386.deb) ...
+Selecting previously unselected package gfortran-4.7.
+Unpacking gfortran-4.7 (from .../gfortran-4.7_4.7.3-4_i386.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.3-4_i386.deb) ...
-Selecting previously unselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_i386.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.7.2-1_i386.deb) ...
+Selecting previously unselected package libblas3.
+Unpacking libblas3 (from .../libblas3_1.2.20110419-5_i386.deb) ...
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-Selecting previously unselected package libbz2-dev:i386.
-Unpacking libbz2-dev:i386 (from .../libbz2-dev_1.0.6-1_i386.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_i386.deb) ...
Selecting previously unselected package libjpeg8-dev:i386.
Unpacking libjpeg8-dev:i386 (from .../libjpeg8-dev_8d-1_i386.deb) ...
-Selecting previously unselected package liblapack3gf.
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+Selecting previously unselected package liblapack3.
+Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_i386.deb) ...
Selecting previously unselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_i386.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.4.2+dfsg-1_i386.deb) ...
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+Unpacking libtinfo-dev:i386 (from .../libtinfo-dev_5.9+20130504-1_i386.deb) ...
+Selecting previously unselected package libncurses5-dev:i386.
+Unpacking libncurses5-dev:i386 (from .../libncurses5-dev_5.9+20130504-1_i386.deb) ...
Selecting previously unselected package libpaper-utils.
-Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_i386.deb) ...
-Selecting previously unselected package libpcre3-dev.
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-Selecting previously unselected package zlib1g-dev:i386.
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+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_i386.deb) ...
+Selecting previously unselected package libpcre3-dev:i386.
+Unpacking libpcre3-dev:i386 (from .../libpcre3-dev_1%3a8.31-2_i386.deb) ...
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-Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-1_i386.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_i386.deb) ...
Selecting previously unselected package libreadline6-dev:i386.
-Unpacking libreadline6-dev:i386 (from .../libreadline6-dev_6.2-8_i386.deb) ...
+Unpacking libreadline6-dev:i386 (from .../libreadline6-dev_6.2+dfsg-0.1_i386.deb) ...
Selecting previously unselected package libreadline-dev:i386.
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+Unpacking libreadline-dev:i386 (from .../libreadline-dev_6.2+dfsg-0.1_i386.deb) ...
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+Unpacking unzip (from .../archives/unzip_6.0-9_i386.deb) ...
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+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
Selecting previously unselected package tcl8.5.
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+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_i386.deb) ...
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+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_i386.deb) ...
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+Unpacking r-base-core (from .../r-base-core_3.0.1-1_i386.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.15.0-1_all.deb) ...
-Setting up libpipeline1:i386 (1.2.1-1) ...
-Setting up libmagic1:i386 (5.11-1) ...
-Setting up libpcre3:i386 (1:8.30-4) ...
-Setting up libexpat1:i386 (2.1.0-1) ...
-Setting up libfreetype6:i386 (2.4.9-1) ...
-Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3.1) ...
-Setting up libfontconfig1:i386 (2.8.0-3.1) ...
-Setting up libpixman-1-0:i386 (0.24.4-1) ...
-Setting up libpng12-0:i386 (1.2.49-1) ...
+Unpacking r-base-dev (from .../r-base-dev_3.0.1-1_all.deb) ...
+Processing triggers for man-db ...
+Not building database; man-db/auto-update is not 'true'.
+Processing triggers for mime-support ...
+Setting up libfreetype6:i386 (2.4.9-1.1) ...
+Setting up ucf (3.0025+nmu3) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:i386 (2.9.0-7.1) ...
+Setting up libpixman-1-0:i386 (0.26.0-4) ...
+Setting up libpng12-0:i386 (1.2.49-4) ...
Setting up libxau6:i386 (1:1.0.7-1) ...
-Setting up libxdmcp6:i386 (1:1.1.0-4) ...
-Setting up libxcb1:i386 (1.8.1-1) ...
-Setting up libx11-data (2:1.4.4-4) ...
-Setting up libx11-6:i386 (2:1.4.4-4) ...
-Setting up libxcb-render0:i386 (1.8.1-1) ...
-Setting up libxcb-shm0:i386 (1.8.1-1) ...
-Setting up libxrender1:i386 (1:0.9.6-2) ...
-Setting up libcairo2:i386 (1.12.0-2) ...
-Setting up libffi5:i386 (3.0.10-3) ...
-Setting up libglib2.0-0:i386 (2.32.0-4) ...
-No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-7) ...
-Setting up libcroco3:i386 (0.6.5-1) ...
-Setting up libdatrie1:i386 (0.2.5-3) ...
-Setting up libgfortran3:i386 (4.7.0-3) ...
-Setting up x11-common (1:7.6+12) ...
+Setting up libxdmcp6:i386 (1:1.1.1-1) ...
+Setting up libxcb1:i386 (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:i386 (2:1.5.0-1) ...
+Setting up libxcb-render0:i386 (1.8.1-2) ...
+Setting up libxcb-shm0:i386 (1.8.1-2) ...
+Setting up libxext6:i386 (2:1.3.1-2) ...
+Setting up libxrender1:i386 (1:0.9.7-1) ...
+Setting up libcairo2:i386 (1.12.14-4) ...
+Setting up libdatrie1:i386 (0.2.6-2) ...
+Setting up libgfortran3:i386 (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6:i386 (2:1.0.8-2) ...
Setting up libjpeg8:i386 (8d-1) ...
-Setting up libthai-data (0.1.17-1) ...
-Setting up libthai0:i386 (0.1.17-1) ...
-Setting up libxft2:i386 (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3.1) ...
-Cleaning up old fontconfig caches... done.
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:i386 (0.1.19-2) ...
+Setting up libxft2:i386 (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
Regenerating fonts cache... done.
Setting up libpango1.0-0:i386 (1.30.0-1) ...
-Setting up libpcrecpp0:i386 (1:8.30-4) ...
-Setting up libsm6:i386 (2:1.2.1-2) ...
-Setting up libtiff4:i386 (3.9.6-2) ...
-Setting up libunistring0:i386 (0.9.3-5) ...
-Setting up libxext6:i386 (2:1.3.0-3) ...
-Setting up libxss1:i386 (1:1.2.1-2) ...
-Setting up libxt6:i386 (1:1.1.1-2) ...
-Setting up bsdmainutils (9.0.1) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
-Building database of manual pages ...
-Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.109) ...
-Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-5) ...
-Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120410) ...
-Setting up dpatch (2.0.35) ...
-Setting up gfortran-4.6 (4.6.3-3) ...
-Setting up gfortran (4:4.6.3-4) ...
-update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev:i386 (1.0.6-1) ...
-Setting up libjpeg8-dev:i386 (8d-1) ...
-Setting up liblapack3gf (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev:i386 (5.9-6) ...
-Setting up libncurses5-dev (5.9-6) ...
-Setting up libpaper1 (1.1.24+nmu1) ...
+Setting up libpaper1:i386 (1.1.24+nmu2) ...
Creating config file /etc/papersize with new version
-Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcre3-dev (1:8.30-4) ...
-Setting up zlib1g-dev:i386 (1:1.2.6.dfsg-2) ...
-Setting up libpng12-dev (1.2.49-1) ...
-Setting up libreadline6-dev:i386 (6.2-8) ...
-Setting up libreadline-dev:i386 (6.2-8) ...
-Setting up zip (3.0-4) ...
-Setting up unzip (6.0-6) ...
-Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
-Setting up tcl8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.15.0-1) ...
-Setting R_PAPERSIZE_USER default to 'a4'
+Setting up libpcrecpp0:i386 (1:8.31-2) ...
+Setting up libsm6:i386 (2:1.2.1-2) ...
+Setting up libjbig0:i386 (2.0-2) ...
+Setting up libtiff5:i386 (4.0.2-6) ...
+Setting up libxss1:i386 (1:1.2.2-1) ...
+Setting up libxt6:i386 (1:1.1.3-1) ...
+Setting up cdbs (0.4.121) ...
+Setting up libgfortran-4.7-dev:i386 (4.7.3-4) ...
+Setting up gfortran-4.7 (4.7.3-4) ...
+Setting up gfortran (4:4.7.2-1) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libjpeg8-dev:i386 (8d-1) ...
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:i386 (5.9+20130504-1) ...
+Setting up libncurses5-dev:i386 (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:i386 (1:8.31-2) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:i386 (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:i386 (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.1-1) ...
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.15.0-1) ...
+Setting up r-base-dev (3.0.1-1) ...
+Processing triggers for libc-bin ...
+ldconfig deferred processing now taking place
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 8 not upgraded.
+The following packages were automatically installed and are no longer required:
+ libexpat1-dev libffi5 libmpc2 libncursesw5 libreadline5 libruby1.8
+ libruby1.9.1 libsqlite3-0 libssl-dev libssl1.0.0 libyaml-0-2 mime-support
+ ruby ruby1.8 ruby1.8-dev ruby1.9.1 ruby1.9.1-dev rubygems
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-686-bigmem i386 (i686)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-3 gcc-4.6_4.6.3-3 libc6-dev_2.13-27 libstdc++6_4.7.0-3 libstdc++6-4.6-dev_4.6.3-3 linux-libc-dev_3.2.13-1
-Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.109 coreutils_8.13-3.1 cpp_4:4.6.3-4 cpp-4.6_4.6.3-3 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120410 debian-archive-keyring_2010.08.28 debianutils_4.3 diffutils_1:3.2-2 dpatch_2.0.35 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-1 e2fsprogs_1.42.2-1 fakeroot_1.18.2-1 file_5.11-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.3-4 g++-4.6_4.6.3-3 gawk_1:3.1.8+dfsg-0.1 gcc_4:4.6.3-4 gcc-4.6_4.6.3-3 gcc-4.6-base_4.6.3-3 gcc-4.7-base_4.7.0-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.3-4 gfortran-4.6_4.6.3-3 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.10-1 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-27 libc-dev-bin_2.13-27 libc6_2.13-27 libc6-dev_2.13-27 libcairo2_1.12.0-2 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libexpat1_2.1.0-1 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-1+b1 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-3 libgdbm3_1.8.3-10 libgfortran3_4.7.0-3 libglib2.0-0_2.32.0-4 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-3 libice6_2:1.0.8-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-6 libncurses5-dev_5.9-6 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_1:8.30-4 libpcre3-dev_1:8.30-4 libpcrecpp0_1:8.30-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.49-1 libpng12-dev_1.2.49-1 libquadmath0_4.7.0-3 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.9-4 libsemanage-common_2.1.6-5 libsemanage1_2.1.6-5 libsepol1_2.1.4-3 libsigsegv2_2.9-4 libslang2_2.2.4-7 libsm6_2:1.2.1-2 libss2_1.42.2-1 libstdc++6_4.7.0-3 libstdc++6-4.6-dev_4.6.3-3 libswitch-perl_2.16-2 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-6 libtinfo5_5.9-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-21 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.2.13-1 login_1:4.1.5-1 lsb-base_4.1+Debian0 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-27 ncurses-base_5.9-5 ncurses-bin_5.9-6 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 r-base-core_2.15.0-1 r-base-dev_2.15.0-1 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2012b-1 ucf_3.0025+nmu2 unzip_6.0-6 util-linux_2.20.1-4 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.7_4.7.3-4 gcc-4.6_4.6.4-2 gcc-4.7_4.7.3-4 libc6-dev_2.17-1 libstdc++6_4.8.0-7 libstdc++6-4.7-dev_4.7.3-4 linux-libc-dev_3.8.11-1
+Package versions: apt_0.9.8 base-files_7.2 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.22-8 bison_2:2.5.dfsg-3 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.13-3.3 cpp_4:4.7.2-1 cpp-4.6_4.6.4-2 cpp-4.7_4.7.3-4 dash_0.5.7-3 debconf_1.5.50 debfoster_2.7-1.2 debhelper_9.20130509 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-1 findutils_4.4.2-5 flex_2.5.35-10.1 fontconfig_2.9.0-7.1 fontconfig-config_2.9.0-7.1 fonts-dejavu-core_2.33+svn2514-3 g++_4:4.7.2-1 g++-4.7_4.7.3-4 gawk_1:4.0.1+dfsg-2.1 gcc_4:4.7.2-1 gcc-4.6_4.6.4-2 gcc-4.6-base_4.6.4-2 gcc-4.7_4.7.3-4 gcc-4.7-base_4.7.3-4 gcc-4.8-base_4.8.0-7 gettext_0.18.1.1-10 gettext-base_0.18.1.1-10 gfortran_4:4.7.2-1 gfortran-4.7_4.7.3-4 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.14-1 groff-base_1.22.2-2 gzip_1.5-1.1 hostname_3.12 html2text_1.3.2a-15 initscripts_2.88dsf-41 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.8 libasprintf-dev_0.18.1.1-10 libasprintf0c2_0.18.1.1-10 libattr1_1:2.4.46-8 libbison-dev_2:2.5.dfsg-3 libblas-dev_1.2.20110419-5 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.4 libbz2-1.0_1.0.6-4 libbz2-dev_1.0.6-4 libc-bin_2.17-1 libc-dev-bin_2.17-1 libc6_2.17-1 libc6-dev_2.17-1 libcairo2_1.12.14-4 libcap2_1:2.22-1.2 libclass-isa-perl_0.36-5 libcloog-ppl1_0.16.1-2 libcomerr2_1.42.5-1.1 libcroco3_0.6.6-2 libcunit1_2.1-0.dfsg-11 libcunit1-dev_2.1-0.dfsg-11 libdatrie1_0.2.6-2 libdb5.1_5.1.29-5 libdpkg-perl_1.16.10 libexpat1_2.1.0-3 libexpat1-dev_2.1.0-3 libffi5_3.0.10-3 libffi6_3.0.13-4 libfontconfig1_2.9.0-7.1 libfreetype6_2.4.9-1.1 libgc1c2_1:7.1-9.1 libgcc-4.7-dev_4.7.3-4 libgcc1_1:4.8.0-7 libgdbm3_1.8.3-11 libgettextpo-dev_0.18.1.1-10 libgettextpo0_0.18.1.1-10 libgfortran-4.7-dev_4.7.3-4 libgfortran3_4.8.0-7 libglib2.0-0_2.36.1-2build1 libgmp10_2:5.1.1+dfsg-3 libgmpxx4ldbl_2:5.1.1+dfsg-3 libgomp1_4.8.0-7 libice6_2:1.0.8-2 libitm1_4.8.0-7 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.4.2+dfsg-1 liblapack3_3.4.2+dfsg-1 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-1 libmount1_2.20.1-5.4 libmpc2_0.9-4 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libncurses5_5.9+20130504-1 libncurses5-dev_5.9+20130504-1 libncursesw5_5.9+20130504-1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.31-2 libpcre3-dev_1:8.31-2 libpcrecpp0_1:8.31-2 libpipeline1_1.2.3-1 libpixman-1-0_0.26.0-4 libpng12-0_1.2.49-4 libpng12-dev_1.2.49-4 libppl-c4_1:1.0-7 libppl12_1:1.0-7 libquadmath0_4.8.0-7 libreadline-dev_6.2+dfsg-0.1 libreadline5_5.2+dfsg-2 libreadline6_6.2+dfsg-0.1 libreadline6-dev_6.2+dfsg-0.1 libruby1.8_1.8.7.358-7 libruby1.9.1_1.9.3.194-8.1+b1 libselinux1_2.1.13-1 libselinux1-dev_2.1.13-1 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.9-1 libsepol1-dev_2.1.9-1 libsigsegv2_2.9-4 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libsqlite3-0_3.7.16.2-1 libss2_1.42.5-1.1 libssl-dev_1.0.1e-2 libssl1.0.0_1.0.1e-2 libstdc++6_4.8.0-7 libstdc++6-4.7-dev_4.7.3-4 libswitch-perl_2.16-2 libthai-data_0.1.19-2 libthai0_0.1.19-2 libtiff5_4.0.2-6 libtimedate-perl_1.2000-1 libtinfo-dev_5.9+20130504-1 libtinfo5_5.9+20130504-1 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23+nmu1 libustr-1.0-1_1.0.4-3 libustr-dev_1.0.4-3 libuuid1_2.20.1-5.4 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-2 libxcb-shm0_1.8.1-2 libxcb1_1.8.1-2 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-7+nmu1 libxrender1_1:0.9.7-1 libxss1_1:1.2.2-1 libxt6_1:1.1.3-1 libyaml-0-2_0.1.4-2 linux-libc-dev_3.8.11-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian9 m4_1.4.16-5 make_3.81-8.2 man-db_2.6.3-6 mawk_1.3.3-17 mime-support_3.53 mount_2.20.1-5.3 multiarch-support_2.17-1 ncurses-base_5.9-10 ncurses-bin_5.9+20130504-1 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-21 perl-base_5.14.2-21 perl-modules_5.14.2-21 po-debconf_1.0.16+nmu2 r-base-core_3.0.1-1 r-base-dev_3.0.1-1 readline-common_6.2+dfsg-0.1 ruby_1:1.9.3 ruby1.8_1.8.7.358-7 ruby1.8-dev_1.8.7.358-7 ruby1.9.1_1.9.3.194-8.1+b1 ruby1.9.1-dev_1.9.3.194-8.1+b1 rubygems_1.8.24-1 sed_4.2.2-1 sensible-utils_0.0.7 sudo_1.8.5p2-1+nmu1 swig_2.0.9-1 swig2.0_2.0.9-1 sysv-rc_2.88dsf-41 sysvinit_2.88dsf-41 sysvinit-utils_2.88dsf-41 tar_1.26+dfsg-5 tcl8.5_8.5.11-2 tk8.5_8.5.11-2 ttf-dejavu-core_2.33+svn2514-3 tzdata_2013b-2 ucf_3.0025+nmu3 unzip_6.0-9 util-linux_2.20.1-5.3 x11-common_1:7.7+3 xdg-utils_1.1.0~rc1+git20111210-7 xz-utils_5.1.1alpha+20120614-2 zip_3.0-7 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -474,12 +425,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Apr 12 02:45:32 2012 UTC using RSA key ID 2295D502
+gpgv: Signature made Thu May 16 14:46:42 2013 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.12.0~dfsg-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.12.0~dfsg
-dpkg-source: info: unpacking r-bioc-limma_3.12.0~dfsg.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.12.0~dfsg-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.16.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.16.3~dfsg
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg-1.debian.tar.gz
Check disc space
────────────────
@@ -489,27 +440,12 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.12.0~dfsg-1
- dpkg-source --before-build r-bioc-limma-3.12.0~dfsg
+dpkg-buildpackage: source version 3.16.3~dfsg-1
+ dpkg-source --before-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: host architecture i386
fakeroot debian/rules clean
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
-/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-i386-sebhmq/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-i386-sebhmq/r-bioc-limma-3.12.0~dfsg'
-if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "reverse-patches" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-for dir in debian/patches ; do \
- rm -f $dir/*.log ; \
- done
dh_clean
rm -f debian/r-bioc-limma.substvars
rm -f debian/r-bioc-limma.*.debhelper
@@ -530,26 +466,9 @@ if test -d src; then \
fi
rm -f config.log config.status
debian/rules build-arch
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
-/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-i386-sebhmq/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-i386-sebhmq/r-bioc-limma-3.12.0~dfsg'
-if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) insteadmake[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-i386-sebhmq/r-bioc-limma-3.12.0~dfsg'
-
-make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-i386-sebhmq/r-bioc-limma-3.12.0~dfsg'
fakeroot debian/rules binary-arch
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
@@ -561,26 +480,26 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
install -d debian/r-bioc-limma/usr/lib/R/site-library
-echo "R:Depends=r-base-core (>= 2.15.0-1)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 3.0.1-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-i386-sebhmq/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-i386-WeUhHx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-i386-sebhmq/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-i386-WeUhHx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-i386-sebhmq/r-bioc-limma-3.12.0~dfsg/src'
-gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c normexp.c -o normexp.o
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-i386-WeUhHx/r-bioc-limma-3.16.3~dfsg/src'
+gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O2 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-i386-sebhmq/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-i386-sebhmq/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-i386-sebhmq/r-bioc-limma-3.12.0~dfsg/src'
-installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-i386-sebhmq/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-i386-WeUhHx/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-i386-WeUhHx/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-i386-WeUhHx/r-bioc-limma-3.16.3~dfsg/src'
+installing to /build/buildd-r-bioc-limma_3.16.3~dfsg-1-i386-WeUhHx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -588,22 +507,27 @@ installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-i386-sebhmq/r-bioc-limma-
*** installing help indices
** building package indices
** installing vignettes
- 'limma.Rnw'
** testing if installed package can be loaded
-
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.12.0~dfsg-1-i386-sebhmq/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-i386-sebhmq/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-i386-sebhmq/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.16.3~dfsg-1-i386-WeUhHx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-i386-WeUhHx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-i386-WeUhHx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.12.0~dfsg-1-i386-sebhmq/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.16.3~dfsg-1-i386-WeUhHx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-i386-sebhmq/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-i386-WeUhHx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/CITATION
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/doc/*
dh_installdocs -pr-bioc-limma
install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-limma_3.16.3~dfsg-1-i386-WeUhHx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/doc/r-bioc-limma \;
+ cp -a debian/README.test debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ chown -R 0:0 debian/r-bioc-limma/usr/share/doc
+ chmod -R go=rX debian/r-bioc-limma/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-limma/usr/share/doc
install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
@@ -635,9 +559,9 @@ dh_strip -pr-bioc-limma
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
cd debian/r-bioc-limma
- chmod a-x usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/changelog.Debian
- gzip -9nf usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/changelog.Debian
- cd '/build/buildd-r-bioc-limma_3.12.0~dfsg-1-i386-sebhmq/r-bioc-limma-3.12.0~dfsg'
+ chmod a-x usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/changelog.Debian
+ gzip -9nf usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/changelog.Debian
+ cd '/build/buildd-r-bioc-limma_3.16.3~dfsg-1-i386-WeUhHx/r-bioc-limma-3.16.3~dfsg'
dh_fixperms -pr-bioc-limma
find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -659,6 +583,7 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
echo misc:Depends= >> debian/r-bioc-limma.substvars
dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-limma.substvars -Pdebian/r-bioc-limma
+dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
chmod 644 debian/r-bioc-limma/DEBIAN/control
chown 0:0 debian/r-bioc-limma/DEBIAN/control
dh_md5sums -pr-bioc-limma
@@ -667,62 +592,79 @@ dh_md5sums -pr-bioc-limma
chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
dpkg-deb --build debian/r-bioc-limma ..
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.12.0~dfsg-1_i386.deb'.
- dpkg-genchanges -B -mi386 Build Daemon (murphy) <buildd_i386-murphy at buildd.debian.org> >../r-bioc-limma_3.12.0~dfsg-1_i386.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.16.3~dfsg-1_i386.deb'.
+ dpkg-genchanges -B -mi386 Build Daemon (murphy) <buildd_i386-murphy at buildd.debian.org> >../r-bioc-limma_3.16.3~dfsg-1_i386.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.12.0~dfsg
+ dpkg-source --after-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120412-0332
+Build finished at 20130516-1543
-r-bioc-limma_3.12.0~dfsg-1_i386.changes:
+r-bioc-limma_3.16.3~dfsg-1_i386.changes:
Format: 1.8
-Date: Thu, 12 Apr 2012 11:40:40 +0900
+Date: Thu, 16 May 2013 15:16:13 +0200
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: i386
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
Distribution: sid
Urgency: low
Maintainer: i386 Build Daemon (murphy) <buildd_i386-murphy at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.12.0~dfsg-1) unstable; urgency=low
+ r-bioc-limma (3.16.3~dfsg-1) unstable; urgency=low
.
[ Charles Plessy ]
- 2d3420e Imported Upstream version 3.12.0~dfsg
- 4bbb8e4 Document LIMMA's copyright as a whole.
+ ff8c6db Imported Upstream version 3.12.1~dfsg
+ b4f097e Effective license is GPL-2, without the '+', as R is GPL-2.
.
[ Andreas Tille ]
- 8a61a4c Obtain references from inst/CITATION
+ * Imported new upstream version 3.16.3~dfsg
+ * debian/control
+ - added myself to Uploaders
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - Fake normalisation as it is done by `cme fix dpkg-control`
+ (the command did actually no change - the control file was
+ brought into shape manually)
+ - Removed versioned dependency of r-base-dev
+ * debian/copyright:
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - checked new upstream version and bumped version number
+ - Add years to Copyright fields
+ * debian/rules: Remove executable flag from doc files
+ * debian/source/format: Add explicit source format specification
Checksums-Sha1:
- 9022d9c41524e87c8cb1233d3455c54920a07328 805608 r-bioc-limma_3.12.0~dfsg-1_i386.deb
+ 1f0d9a71df0fe7989536f59646ef75e901d619f4 1614898 r-bioc-limma_3.16.3~dfsg-1_i386.deb
Checksums-Sha256:
- 30aa5500a314cf59ed3f72feb44eabe26d1f77a4da8f1b70db25586bb5c54758 805608 r-bioc-limma_3.12.0~dfsg-1_i386.deb
+ f837b728716687cbcdce0d566d8056151d88c4795d331db08bd4924e6bd6b6e7 1614898 r-bioc-limma_3.16.3~dfsg-1_i386.deb
Files:
- 25628dedbf2dedff58252321d5f2a2ec 805608 gnu-r optional r-bioc-limma_3.12.0~dfsg-1_i386.deb
+ d23148b118d46e71cb7772083abc5eac 1614898 gnu-r optional r-bioc-limma_3.16.3~dfsg-1_i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.12.0~dfsg-1_i386.deb
+r-bioc-limma_3.16.3~dfsg-1_i386.deb
───────────────────────────────────
new debian package, version 2.0.
- size 805608 bytes: control archive= 1540 bytes.
+ size 1614898 bytes: control archive= 1667 bytes.
774 bytes, 16 lines control
- 2290 bytes, 30 lines md5sums
+ 2621 bytes, 34 lines md5sums
Package: r-bioc-limma
- Version: 3.12.0~dfsg-1
+ Version: 3.16.3~dfsg-1
Architecture: i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 982
- Depends: libc6 (>= 2.1.3), r-base-core (>= 2.15.0-1)
+ Installed-Size: 1845
+ Depends: libc6 (>= 2.1.3), r-base-core (>= 3.0.1-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -734,51 +676,56 @@ r-bioc-limma_3.12.0~dfsg-1_i386.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/lib/
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/lib/R/
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 9754 2012-04-12 03:32 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 1179 2012-04-12 03:32 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 35015 2012-04-12 03:32 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1901 2012-04-12 03:32 ./usr/lib/R/site-library/limma/NAMESPACE
--rwxr-xr-x root/root 1230 2012-04-12 03:32 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 8120 2012-04-12 03:32 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 202042 2012-04-12 03:32 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 383 2012-04-12 03:32 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 3817 2012-04-12 03:32 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 3989 2012-04-12 03:32 ./usr/lib/R/site-library/limma/NEWS.Rd
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 2431 2012-04-12 03:32 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 472353 2012-04-12 03:32 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 6317 2012-04-12 03:32 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 1372 2012-04-12 03:32 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 3325 2012-04-12 03:32 ./usr/lib/R/site-library/limma/help/limma.rdx
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 673 2012-04-12 03:32 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 42743 2012-04-12 03:32 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 91993 2012-04-12 03:32 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 1711 2012-04-12 03:32 ./usr/lib/R/site-library/limma/doc/limma.Rnw
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 1051 2012-04-12 03:32 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 220 2012-04-12 03:32 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 521 2012-04-12 03:32 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 6157 2012-04-12 03:32 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 2943 2012-04-12 03:32 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 5727 2012-04-12 03:32 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 964 2012-04-12 03:32 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/share/
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 683 2012-04-12 03:32 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 2457 2012-04-12 03:32 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 264 2012-04-12 03:32 ./usr/share/doc/r-bioc-limma/README.Debian
--rw-r--r-- root/root 27996 2012-03-30 22:32 ./usr/share/doc/r-bioc-limma/changelog.gz
+drwxr-xr-x root/root 0 2013-05-16 15:42 ./
+drwxr-xr-x root/root 0 2013-05-16 15:42 ./usr/
+drwxr-xr-x root/root 0 2013-05-16 15:42 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-16 15:42 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-16 15:42 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-16 15:42 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 10085 2013-05-16 15:42 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2013-05-16 15:42 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2013-05-16 15:42 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 37337 2013-05-16 15:42 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 2046 2013-05-16 15:42 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 963 2013-05-16 15:42 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2013-05-16 15:43 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 7892 2013-05-16 15:43 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2013-05-16 15:42 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 206551 2013-05-16 15:42 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 1056 2013-05-16 15:42 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 4119 2013-05-16 15:42 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 11214 2013-05-16 15:42 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2013-05-16 15:42 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 2567 2013-05-16 15:42 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 494679 2013-05-16 15:42 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 6703 2013-05-16 15:42 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 1405 2013-05-16 15:42 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 3414 2013-05-16 15:42 ./usr/lib/R/site-library/limma/help/limma.rdx
+drwxr-xr-x root/root 0 2013-05-16 15:42 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 673 2013-05-16 15:42 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 45597 2013-05-16 15:42 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 102936 2013-05-16 15:42 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 806089 2013-05-16 15:42 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 1711 2013-05-16 15:42 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+drwxr-xr-x root/root 0 2013-05-16 15:42 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 1064 2013-05-16 15:42 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 219 2013-05-16 15:42 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 541 2013-05-16 15:42 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 6375 2013-05-16 15:42 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 3089 2013-05-16 15:42 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 5944 2013-05-16 15:42 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 985 2013-05-16 15:42 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2013-05-16 15:42 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-16 15:42 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-16 15:43 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 1153 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 2605 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 264 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 437 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.test
+drwxr-xr-x root/root 0 2013-05-16 15:43 ./usr/share/doc/r-bioc-limma/tests/
+-rw-r--r-- root/root 14649 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save.gz
+-rw-r--r-- root/root 2097 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.R.gz
+-rw-r--r-- root/root 31097 2013-05-02 00:02 ./usr/share/doc/r-bioc-limma/changelog.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -792,41 +739,40 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-i386-sbuild-35fb9096-19d5-4bfb-8d0b-9af40c334d88/build/buildd-r-bioc-limma_3.12.0~dfsg-1-i386-sebhmq
+Purging /var/lib/schroot/mount/sid-i386-sbuild-14df681c-fef9-4ace-84f3-a9c3e59f5bea/build/buildd-r-bioc-limma_3.16.3~dfsg-1-i386-WeUhHx
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 8 not upgraded.
+The following packages were automatically installed and are no longer required:
+ libexpat1-dev libffi5 libmpc2 libncursesw5 libreadline5 libruby1.8
+ libruby1.9.1 libsqlite3-0 libssl-dev libssl1.0.0 libyaml-0-2 mime-support
+ ruby ruby1.8 ruby1.8-dev ruby1.9.1 ruby1.9.1-dev rubygems
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
+The following packages were automatically installed and are no longer required:
+ libexpat1 libexpat1-dev libffi5 libmpc2 libncursesw5 libreadline5 libruby1.8
+ libruby1.9.1 libsqlite3-0 libssl-dev libssl1.0.0 libyaml-0-2 mime-support
+ ruby ruby1.8 ruby1.8-dev ruby1.9.1 ruby1.9.1-dev rubygems zlib1g-dev
+Use 'apt-get autoremove' to remove them.
The following packages will be REMOVED:
- bsdmainutils* cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config*
- gettext* gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
- intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
- libdatrie1* libexpat1* libffi5* libfontconfig1* libfreetype6* libgfortran3*
- libglib2.0-0* libice6* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf*
- libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1*
- libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0*
- libpng12-0* libpng12-dev* libreadline-dev* libreadline6-dev* libsm6*
- libthai-data* libthai0* libtiff4* libtinfo-dev* libunistring0* libx11-6*
+ cdbs* fontconfig* fontconfig-config* fonts-dejavu-core* gfortran*
+ gfortran-4.7* libblas-dev* libblas3* libcairo2* libdatrie1* libfontconfig1*
+ libfreetype6* libgfortran-4.7-dev* libgfortran3* libice6* libjbig0*
+ libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3* libncurses5-dev*
+ libpango1.0-0* libpaper-utils* libpaper1* libpcre3-dev* libpcrecpp0*
+ libpixman-1-0* libpng12-0* libpng12-dev* libreadline-dev* libreadline6-dev*
+ libsm6* libthai-data* libthai0* libtiff5* libtinfo-dev* libx11-6*
libx11-data* libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6*
- libxext6* libxft2* libxml2* libxrender1* libxss1* libxt6* man-db*
- po-debconf* r-base-core* r-base-dev* tcl8.5* tk8.5* ttf-dejavu-core* unzip*
- x11-common* xdg-utils* zip* zlib1g-dev*
-0 upgraded, 0 newly installed, 76 to remove and 8 not upgraded.
-After this operation, 118 MB disk space will be freed.
-(Reading database ... 15146 files and directories currently installed.)
-Removing debhelper ...
-Removing man-db ...
-Purging configuration files for man-db ...
-Removing bsdmainutils ...
-Purging configuration files for bsdmainutils ...
+ libxext6* libxft2* libxrender1* libxss1* libxt6* r-base-core* r-base-dev*
+ tcl8.5* tk8.5* ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip*
+0 upgraded, 0 newly installed, 58 to remove and 16 not upgraded.
+After this operation, 96.3 MB disk space will be freed.
+(Reading database ... 18712 files and directories currently installed.)
Removing r-base-dev ...
Removing cdbs ...
-Removing dpatch ...
-Purging configuration files for dpatch ...
-Removing file ...
Removing r-base-core ...
Purging configuration files for r-base-core ...
Removing libpango1.0-0:i386 ...
@@ -843,37 +789,22 @@ Removing libfontconfig1:i386 ...
Purging configuration files for libfontconfig1:i386 ...
Removing fontconfig-config ...
Purging configuration files for fontconfig-config ...
-Removing po-debconf ...
-Removing intltool-debian ...
-Removing gettext ...
-Removing gettext-base ...
+Removing ttf-dejavu-core ...
+Removing fonts-dejavu-core ...
+Purging configuration files for fonts-dejavu-core ...
Removing gfortran ...
-Removing gfortran-4.6 ...
-Removing groff-base ...
-Purging configuration files for groff-base ...
-Removing html2text ...
-Purging configuration files for html2text ...
+Removing gfortran-4.7 ...
Removing liblapack-dev ...
Removing libblas-dev ...
-Removing liblapack3gf ...
-Purging configuration files for liblapack3gf ...
-Removing libblas3gf ...
-Purging configuration files for libblas3gf ...
-Removing libbz2-dev:i386 ...
-Removing libcroco3:i386 ...
-Purging configuration files for libcroco3:i386 ...
+Removing liblapack3 ...
+Removing libblas3 ...
Removing libthai0:i386 ...
Purging configuration files for libthai0:i386 ...
Removing libdatrie1:i386 ...
Purging configuration files for libdatrie1:i386 ...
-Removing libexpat1:i386 ...
-Purging configuration files for libexpat1:i386 ...
-Removing libglib2.0-0:i386 ...
-Purging configuration files for libglib2.0-0:i386 ...
-Removing libffi5:i386 ...
-Purging configuration files for libffi5:i386 ...
Removing libfreetype6:i386 ...
Purging configuration files for libfreetype6:i386 ...
+Removing libgfortran-4.7-dev:i386 ...
Removing libgfortran3:i386 ...
Purging configuration files for libgfortran3:i386 ...
Removing libxt6:i386 ...
@@ -882,23 +813,19 @@ Removing libsm6:i386 ...
Purging configuration files for libsm6:i386 ...
Removing libice6:i386 ...
Purging configuration files for libice6:i386 ...
-Removing libtiff4:i386 ...
-Purging configuration files for libtiff4:i386 ...
+Removing libtiff5:i386 ...
+Purging configuration files for libtiff5:i386 ...
+Removing libjbig0:i386 ...
+Purging configuration files for libjbig0:i386 ...
Removing libjpeg8-dev:i386 ...
Removing libjpeg8:i386 ...
-Removing libmagic1:i386 ...
-Purging configuration files for libmagic1:i386 ...
-Removing libncurses5-dev ...
+Removing libncurses5-dev:i386 ...
Removing libpaper-utils ...
-Removing libpaper1 ...
-Purging configuration files for libpaper1 ...
-Removing libpcre3-dev ...
+Removing libpaper1:i386 ...
+Purging configuration files for libpaper1:i386 ...
+Removing libpcre3-dev:i386 ...
Removing libpcrecpp0:i386 ...
Purging configuration files for libpcrecpp0:i386 ...
-Removing libpcre3:i386 ...
-Purging configuration files for libpcre3:i386 ...
-Removing libpipeline1:i386 ...
-Purging configuration files for libpipeline1:i386 ...
Removing libpixman-1-0:i386 ...
Purging configuration files for libpixman-1-0:i386 ...
Removing libpng12-dev ...
@@ -908,8 +835,6 @@ Removing libreadline-dev:i386 ...
Removing libreadline6-dev:i386 ...
Removing libthai-data ...
Removing libtinfo-dev:i386 ...
-Removing libunistring0:i386 ...
-Purging configuration files for libunistring0:i386 ...
Removing libxss1:i386 ...
Purging configuration files for libxss1:i386 ...
Removing libxrender1:i386 ...
@@ -929,11 +854,10 @@ Removing libxau6:i386 ...
Purging configuration files for libxau6:i386 ...
Removing libxdmcp6:i386 ...
Purging configuration files for libxdmcp6:i386 ...
-Removing libxml2 ...
-Purging configuration files for libxml2 ...
Removing tcl8.5 ...
Purging configuration files for tcl8.5 ...
-Removing ttf-dejavu-core ...
+Removing ucf ...
+Purging configuration files for ucf ...
Removing unzip ...
Purging configuration files for unzip ...
Removing x11-common ...
@@ -942,25 +866,29 @@ invoke-rc.d: policy-rc.d denied execution of stop.
Purging configuration files for x11-common ...
Removing xdg-utils ...
Removing zip ...
-Removing zlib1g-dev:i386 ...
+Processing triggers for man-db ...
+Not building database; man-db/auto-update is not 'true'.
+Processing triggers for mime-support ...
+Processing triggers for libc-bin ...
+ldconfig deferred processing now taking place
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: i386
-Build-Space: 3264
-Build-Time: 21
+Build-Space: 5880
+Build-Time: 19
Distribution: sid
-Install-Time: 28
-Job: r-bioc-limma_3.12.0~dfsg-1
+Install-Time: 83
+Job: r-bioc-limma_3.16.3~dfsg-1
Package: r-bioc-limma
-Package-Time: 74
-Source-Version: 3.12.0~dfsg-1
-Space: 3264
+Package-Time: 115
+Source-Version: 3.16.3~dfsg-1
+Space: 5880
Status: successful
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120412-0332
-Build needed 00:01:14, 3264k disc space
-Signature with key '2B54027C' requested:
+Finished at 20130516-1543
+Build needed 00:01:55, 5880k disc space
+Signature with key '76D9491D' requested:
diff --git a/ia64.log b/ia64.log
index c2b10fb..d5fa23c 100644
--- a/ia64.log
+++ b/ia64.log
@@ -1,28 +1,28 @@
-From buildd at alkman.debian.org Thu Apr 12 03:38:05 2012
+From buildd at alkman.debian.org Fri May 17 13:55:25 2013
Return-path: <buildd at alkman.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at alkman.debian.org>)
- id 1SIArE-0007f6-NY
- for logs at buildd.debian.org; Thu, 12 Apr 2012 03:38:05 +0000
+ id 1UdL7r-0004Io-6r
+ for logs at buildd.debian.org; Fri, 17 May 2013 13:55:18 +0000
Received: from alkman.debian.org ([192.25.206.63])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=alkman.debian.org, EMAIL=hostmaster at alkman.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at alkman.debian.org>)
- id 1SIArC-0007o4-Va
- for logs at buildd.debian.org; Thu, 12 Apr 2012 03:38:03 +0000
+ id 1UdL7p-0005N1-L7
+ for logs at buildd.debian.org; Fri, 17 May 2013 13:55:14 +0000
Received: from buildd by alkman.debian.org with local (Exim 4.72)
(envelope-from <buildd at alkman.debian.org>)
- id 1SIArA-0005bg-QT; Thu, 12 Apr 2012 03:38:00 +0000
-Date: Thu, 12 Apr 2012 03:38:00 +0000
-Message-Id: <E1SIArA-0005bg-QT at alkman.debian.org>
+ id 1UdL7n-0004Mk-GB; Fri, 17 May 2013 13:55:11 +0000
+Date: Fri, 17 May 2013 13:55:11 +0000
+Message-Id: <E1UdL7n-0004Mk-GB at alkman.debian.org>
From: buildd on alkman <buildd at alkman.debian.org>
To: buildd-porters at alkman.debian.org,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.12.0~dfsg-1 on ia64
+Subject: Log for successful build of r-bioc-limma_3.16.3~dfsg-1 on ia64
(dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
@@ -31,40 +31,35 @@ Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on alkman.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.12.0~dfsg-1 (ia64) 12 Apr 2012 03:32 ║
+║ r-bioc-limma 3.16.3~dfsg-1 (ia64) 17 May 2013 13:49 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.12.0~dfsg-1
-Source Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
+Source Version: 3.16.3~dfsg-1
Architecture: ia64
-Get:1 http://spohr.debian.org unstable InRelease [208 kB]
-Get:2 http://incoming.debian.org unstable InRelease [208 kB]
-Get:3 http://spohr.debian.org unstable/main Sources [6221 kB]
-Get:4 http://spohr.debian.org unstable/contrib Sources [54.5 kB]
-Get:5 http://spohr.debian.org unstable/non-free Sources [97.7 kB]
-Get:6 http://spohr.debian.org unstable/main ia64 Packages [5671 kB]
-Ign http://incoming.debian.org InRelease
-Get:7 http://incoming.debian.org Release.gpg [836 B]
-Get:8 http://incoming.debian.org unstable/main Sources [6221 kB]
-Get:9 http://spohr.debian.org unstable/contrib ia64 Packages [37.2 kB]
-Ign http://spohr.debian.org unstable/contrib TranslationIndex
-Get:10 http://spohr.debian.org unstable/main TranslationIndex [2223 B]
-Get:11 http://spohr.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:12 http://spohr.debian.org unstable/main Translation-en [3936 kB]
-Get:13 http://incoming.debian.org unstable/contrib Sources [54.5 kB]
-Get:14 http://incoming.debian.org unstable/non-free Sources [97.7 kB]
-Get:15 http://incoming.debian.org unstable/main ia64 Packages [5671 kB]
-Get:16 http://incoming.debian.org unstable/contrib ia64 Packages [37.2 kB]
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:17 http://incoming.debian.org unstable/main TranslationIndex [2223 B]
-Get:18 http://incoming.debian.org Release [1601 B]
-Get:19 http://incoming.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:20 http://incoming.debian.org unstable/main Translation-en [3936 kB]
-Get:21 http://incoming.debian.org Sources [42.9 kB]
-Get:22 http://incoming.debian.org Packages [682 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 33.3 MB in 28s (1167 kB/s)
+Get:1 http://spohr.debian.org unstable Release.gpg [1571 B]
+Get:2 http://spohr.debian.org unstable Release [203 kB]
+Get:3 http://spohr.debian.org unstable/main Sources [6729 kB]
+Get:4 http://incoming.debian.org unstable Release.gpg [1571 B]
+Get:5 http://incoming.debian.org buildd-unstable Release.gpg [1571 B]
+Get:6 http://incoming.debian.org unstable Release [203 kB]
+Get:7 http://spohr.debian.org unstable/contrib Sources [53.7 kB]
+Get:8 http://spohr.debian.org unstable/non-free Sources [103 kB]
+Get:9 http://spohr.debian.org unstable/main ia64 Packages [6080 kB]
+Get:10 http://incoming.debian.org buildd-unstable Release [109 kB]
+Get:11 http://spohr.debian.org unstable/contrib ia64 Packages [37.7 kB]
+Get:12 http://incoming.debian.org unstable/main Sources [6729 kB]
+Get:13 http://incoming.debian.org unstable/contrib Sources [53.7 kB]
+Get:14 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:15 http://incoming.debian.org unstable/main ia64 Packages [6080 kB]
+Get:16 http://incoming.debian.org unstable/contrib ia64 Packages [37.7 kB]
+Get:17 http://incoming.debian.org buildd-unstable/main Sources [104 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib Sources [873 B]
+Get:19 http://incoming.debian.org buildd-unstable/non-free Sources [2683 B]
+Get:20 http://incoming.debian.org buildd-unstable/main ia64 Packages [65.6 kB]
+Get:21 http://incoming.debian.org buildd-unstable/contrib ia64 Packages [14 B]
+Fetched 26.7 MB in 28s (922 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -85,11 +80,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 288 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (dsc) [2030 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (tar) [283 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (diff) [3098 B]
-Fetched 288 kB in 0s (355 kB/s)
+Need to get 1058 kB of source archives.
+Get:1 http://spohr.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (dsc) [1409 B]
+Get:2 http://spohr.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (tar) [1052 kB]
+Get:3 http://spohr.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (diff) [4167 B]
+Fetched 1058 kB in 0s (7330 kB/s)
Download complete and in download only mode
Check arch
@@ -102,537 +97,549 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.2-1)
+build-essential: already installed (11.6)
+fakeroot: already installed (1.18.4-2)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-The following packages were automatically installed and are no longer required:
- libppl9 libpwl5 libppl-c4 libcloog-ppl0 libgmpxx4ldbl
-Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 70 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 46 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-The following packages were automatically installed and are no longer required:
- libppl9 libpwl5 libppl-c4 libcloog-ppl0 libgmpxx4ldbl
-Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 70 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 46 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6.1-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6.1-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev
Checking for already installed dependencies...
-base-files: already installed (6.5)
-base-passwd: already installed (3.5.24)
-bash: already installed (4.2-1)
-coreutils: already installed (8.13-3)
-dash: already installed (0.5.7-2)
-debianutils: already installed (4.2.1)
-diffutils: already installed (1:3.2-1)
-dpkg: already installed (1.16.1.2)
-e2fsprogs: already installed (1.42-1)
-findutils: already installed (4.4.2-4)
-grep: already installed (2.10-1)
-gzip: already installed (1.4-2)
-hostname: already installed (3.10)
-ncurses-base: already installed (5.9-4)
-ncurses-bin: already installed (5.9-4)
-perl-base: already installed (5.14.2-7)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-22)
-sysvinit: already installed (2.88dsf-22)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-1.2)
-mount: already installed (2.20.1-1.2)
-util-linux: already installed (2.20.1-1.2)
-libc6.1-dev: already installed (2.13-26)
-gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
+base-files: already installed (7.1)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2+dfsg-0.1)
+bsdutils: already installed (1:2.20.1-5.3)
+coreutils: already installed (8.13-3.2)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1.1)
+findutils: already installed (4.4.2-5)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+libc-bin: already installed (2.13-38)
+login: already installed (1:4.1.5.1-1)
+mount: already installed (2.20.1-5.3)
+ncurses-base: already installed (5.9-10)
+ncurses-bin: already installed (5.9-10)
+perl-base: already installed (5.14.2-20)
+sed: already installed (4.2.1-10)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-0.1)
+util-linux: already installed (2.20.1-5.3)
+libc6.1-dev: already installed (2.13-38)
+gcc: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120410
+Using default version 9.20130516
cdbs: missing
r-base-dev: missing
-Using default version 2.15.0-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
-The following packages were automatically installed and are no longer required:
- libppl9 libpwl5 libppl-c4 libcloog-ppl0 libgmpxx4ldbl
-Use 'apt-get autoremove' to remove them.
+The following package was automatically installed and is no longer required:
+ libmpc2
+Use 'apt-get autoremove' to remove it.
The following extra packages will be installed:
- bsdmainutils cpp cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
- gcc gcc-4.6 gcc-4.6-base gcc-4.7-base gettext gettext-base gfortran
- gfortran-4.6 groff-base html2text intltool-debian libblas-dev libblas3gf
- libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1
- libfreetype6 libgcc1 libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5
- libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev
- libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0
- libreadline-dev libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev
- libthai-data libthai0 libtiff4 libtinfo-dev libtinfo5 libunistring0 libx11-6
+ bsdmainutils cpp-4.6 file fontconfig fontconfig-config fonts-dejavu-core
+ g++-4.6 gcc-4.6 gcc-4.6-base gcc-4.8-base gettext gettext-base gfortran
+ gfortran-4.6 groff-base html2text intltool-debian libasprintf-dev
+ libasprintf0c2 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6.1
+ libc6.1-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi6 libfontconfig1
+ libfreetype6 libgettextpo-dev libgettextpo0 libgfortran3 libglib2.0-0
+ libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1
+ libmpc3 libncurses5 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
+ libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0
+ libpng12-dev libreadline-dev libreadline6-dev libsm6 libstdc++6-4.6-dev
+ libthai-data libthai0 libtiff5 libtinfo-dev libtinfo5 libunistring0 libx11-6
libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
libxft2 libxml2 libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf
- r-base-core tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common xdg-utils zip
+ r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
zlib1g zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts cpp-doc gcc-4.6-locales dh-make
- curl defoma gcc-4.6-doc libstdc++6-4.6-dbg gcc-multilib manpages-dev
- autoconf automake1.9 libtool flex bison gdb gcc-doc libmudflap0-4.6-dev
- libgcc1-dbg libgomp1-dbg libquadmath0-dbg libmudflap0-dbg gettext-doc
- gfortran-doc gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
- ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make
+ gcc-4.6-doc libstdc++6-4.6-dbg libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg
+ libquadmath0-dbg libmudflap0-dbg libcloog-ppl0 libppl-c2 libppl7 gettext-doc
+ gfortran-doc gfortran-4.6-doc libgfortran3-dbg groff glibc-doc ncurses-doc
+ ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
- texi2html tclreadline gvfs-bin
+ texi2html tcl-tclreadline gvfs-bin
Recommended packages:
- autotools-dev patchutils autopoint libglib2.0-data shared-mime-info libgpm2
- xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
- x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ autotools-dev curl wget lynx-cur autopoint manpages-dev libglib2.0-data
+ shared-mime-info libgpm2 xml-core libmail-sendmail-perl r-recommended
+ r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
- bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config
- gcc-4.7-base gettext gettext-base gfortran gfortran-4.6 groff-base html2text
- intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3
- libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgfortran3
- libglib2.0-0 libice6 libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf
- libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3
- libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
- libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
- libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
- libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
- libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core
- unzip x11-common xdg-utils zip zlib1g-dev
+ bsdmainutils cdbs debhelper file fontconfig fontconfig-config
+ fonts-dejavu-core gcc-4.8-base gettext gettext-base gfortran gfortran-4.6
+ groff-base html2text intltool-debian libasprintf-dev libasprintf0c2
+ libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libffi6 libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0
+ libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3 libmagic1 libmpc3 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 libx11-6
+ libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
+ libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
+ r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+ zlib1g-dev
The following packages will be upgraded:
- cpp cpp-4.6 g++-4.6 gcc gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libncurses5
- libquadmath0 libstdc++6 libstdc++6-4.6-dev libtinfo5 ncurses-bin zlib1g
-15 upgraded, 77 newly installed, 0 to remove and 55 not upgraded.
-Need to get 95.8 MB of archives.
-After this operation, 180 MB of additional disk space will be used.
-Get:1 http://spohr.debian.org/debian/ unstable/main ncurses-bin ia64 5.9-6 [361 kB]
-Get:2 http://spohr.debian.org/debian/ unstable/main gcc-4.7-base ia64 4.7.0-3 [139 kB]
-Get:3 http://spohr.debian.org/debian/ unstable/main libgcc1 ia64 1:4.7.0-3 [46.4 kB]
-Get:4 http://spohr.debian.org/debian/ unstable/main libstdc++6 ia64 4.7.0-3 [437 kB]
-Get:5 http://spohr.debian.org/debian/ unstable/main libtinfo5 ia64 5.9-6 [302 kB]
-Get:6 http://spohr.debian.org/debian/ unstable/main libncurses5 ia64 5.9-6 [350 kB]
-Get:7 http://spohr.debian.org/debian/ unstable/main zlib1g ia64 1:1.2.6.dfsg-2 [117 kB]
-Get:8 http://spohr.debian.org/debian/ unstable/main libpipeline1 ia64 1.2.1-1 [48.2 kB]
-Get:9 http://spohr.debian.org/debian/ unstable/main libmagic1 ia64 5.11-1 [275 kB]
-Get:10 http://spohr.debian.org/debian/ unstable/main libpcre3 ia64 1:8.30-4 [294 kB]
-Get:11 http://spohr.debian.org/debian/ unstable/main libexpat1 ia64 2.1.0-1 [215 kB]
-Get:12 http://spohr.debian.org/debian/ unstable/main libfreetype6 ia64 2.4.9-1 [627 kB]
-Get:13 http://spohr.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:14 http://spohr.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3.1 [219 kB]
-Get:15 http://spohr.debian.org/debian/ unstable/main libfontconfig1 ia64 2.8.0-3.1 [319 kB]
-Get:16 http://spohr.debian.org/debian/ unstable/main libpixman-1-0 ia64 0.24.4-1 [434 kB]
-Get:17 http://spohr.debian.org/debian/ unstable/main libpng12-0 ia64 1.2.49-1 [222 kB]
-Get:18 http://spohr.debian.org/debian/ unstable/main libxau6 ia64 1:1.0.7-1 [20.1 kB]
-Get:19 http://spohr.debian.org/debian/ unstable/main libxdmcp6 ia64 1:1.1.0-4 [26.2 kB]
-Get:20 http://spohr.debian.org/debian/ unstable/main libxcb1 ia64 1.8.1-1 [56.7 kB]
-Get:21 http://spohr.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-4 [187 kB]
-Get:22 http://spohr.debian.org/debian/ unstable/main libx11-6 ia64 2:1.4.4-4 [1080 kB]
-Get:23 http://spohr.debian.org/debian/ unstable/main libxcb-render0 ia64 1.8.1-1 [19.7 kB]
-Get:24 http://spohr.debian.org/debian/ unstable/main libxcb-shm0 ia64 1.8.1-1 [10.9 kB]
-Get:25 http://spohr.debian.org/debian/ unstable/main libxrender1 ia64 1:0.9.6-2 [41.8 kB]
-Get:26 http://spohr.debian.org/debian/ unstable/main libcairo2 ia64 1.12.0-2 [1179 kB]
-Get:27 http://spohr.debian.org/debian/ unstable/main libffi5 ia64 3.0.10-3 [35.5 kB]
-Get:28 http://spohr.debian.org/debian/ unstable/main libglib2.0-0 ia64 2.32.0-4 [2409 kB]
-Get:29 http://spohr.debian.org/debian/ unstable/main libxml2 ia64 2.7.8.dfsg-7 [1179 kB]
-Get:30 http://spohr.debian.org/debian/ unstable/main libcroco3 ia64 0.6.5-1 [175 kB]
-Get:31 http://spohr.debian.org/debian/ unstable/main libdatrie1 ia64 0.2.5-3 [32.5 kB]
-Get:32 http://spohr.debian.org/debian/ unstable/main libquadmath0 ia64 4.7.0-3 [165 kB]
-Get:33 http://spohr.debian.org/debian/ unstable/main libgfortran3 ia64 4.7.0-3 [469 kB]
-Get:34 http://spohr.debian.org/debian/ unstable/main libgomp1 ia64 4.7.0-3 [39.0 kB]
-Get:35 http://spohr.debian.org/debian/ unstable/main x11-common all 1:7.6+12 [283 kB]
-Get:36 http://spohr.debian.org/debian/ unstable/main libice6 ia64 2:1.0.8-2 [82.2 kB]
-Get:37 http://spohr.debian.org/debian/ unstable/main libjpeg8 ia64 8d-1 [244 kB]
-Get:38 http://spohr.debian.org/debian/ unstable/main libthai-data all 0.1.17-1 [205 kB]
-Get:39 http://spohr.debian.org/debian/ unstable/main libthai0 ia64 0.1.17-1 [49.4 kB]
-Get:40 http://spohr.debian.org/debian/ unstable/main libxft2 ia64 2.2.0-3 [77.5 kB]
-Get:41 http://spohr.debian.org/debian/ unstable/main fontconfig ia64 2.8.0-3.1 [340 kB]
-Get:42 http://spohr.debian.org/debian/ unstable/main libpango1.0-0 ia64 1.30.0-1 [581 kB]
-Get:43 http://spohr.debian.org/debian/ unstable/main libpcrecpp0 ia64 1:8.30-4 [128 kB]
-Get:44 http://spohr.debian.org/debian/ unstable/main libsm6 ia64 2:1.2.1-2 [40.9 kB]
-Get:45 http://spohr.debian.org/debian/ unstable/main libtiff4 ia64 3.9.6-2 [274 kB]
-Get:46 http://spohr.debian.org/debian/ unstable/main libunistring0 ia64 0.9.3-5 [463 kB]
-Get:47 http://spohr.debian.org/debian/ unstable/main libxext6 ia64 2:1.3.0-3 [68.0 kB]
-Get:48 http://spohr.debian.org/debian/ unstable/main libxss1 ia64 1:1.2.1-2 [19.0 kB]
-Get:49 http://spohr.debian.org/debian/ unstable/main libxt6 ia64 1:1.1.1-2 [286 kB]
-Get:50 http://spohr.debian.org/debian/ unstable/main bsdmainutils ia64 9.0.1 [240 kB]
-Get:51 http://spohr.debian.org/debian/ unstable/main groff-base ia64 1.21-7 [1376 kB]
-Get:52 http://spohr.debian.org/debian/ unstable/main man-db ia64 2.6.1-2 [1156 kB]
-Get:53 http://spohr.debian.org/debian/ unstable/main g++-4.6 ia64 4.6.3-3 [7233 kB]
-Get:54 http://spohr.debian.org/debian/ unstable/main libstdc++6-4.6-dev ia64 4.6.3-3 [1833 kB]
-Get:55 http://spohr.debian.org/debian/ unstable/main gcc-4.6 ia64 4.6.3-3 [6323 kB]
-Get:56 http://spohr.debian.org/debian/ unstable/main cpp-4.6 ia64 4.6.3-3 [6049 kB]
-Get:57 http://spohr.debian.org/debian/ unstable/main gcc-4.6-base ia64 4.6.3-3 [140 kB]
-Get:58 http://spohr.debian.org/debian/ unstable/main file ia64 5.11-1 [55.3 kB]
-Get:59 http://spohr.debian.org/debian/ unstable/main gettext-base ia64 0.18.1.1-5 [173 kB]
-Get:60 http://spohr.debian.org/debian/ unstable/main cdbs all 0.4.109 [79.4 kB]
-Get:61 http://spohr.debian.org/debian/ unstable/main cpp ia64 4:4.6.3-4 [16.3 kB]
-Get:62 http://spohr.debian.org/debian/ unstable/main html2text ia64 1.3.2a-15 [134 kB]
-Get:63 http://spohr.debian.org/debian/ unstable/main gettext ia64 0.18.1.1-5 [2439 kB]
-Get:64 http://spohr.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:65 http://spohr.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:66 http://spohr.debian.org/debian/ unstable/main debhelper all 9.20120410 [694 kB]
-Get:67 http://spohr.debian.org/debian/ unstable/main dpatch all 2.0.35 [95.2 kB]
-Get:68 http://spohr.debian.org/debian/ unstable/main gcc ia64 4:4.6.3-4 [5022 B]
-Get:69 http://spohr.debian.org/debian/ unstable/main gfortran-4.6 ia64 4.6.3-3 [7138 kB]
-Get:70 http://spohr.debian.org/debian/ unstable/main gfortran ia64 4:4.6.3-4 [1122 B]
-Get:71 http://spohr.debian.org/debian/ unstable/main libblas3gf ia64 1.2.20110419-2 [313 kB]
-Get:72 http://spohr.debian.org/debian/ unstable/main libblas-dev ia64 1.2.20110419-2 [344 kB]
-Get:73 http://spohr.debian.org/debian/ unstable/main libbz2-dev ia64 1.0.6-1 [51.7 kB]
-Get:74 http://spohr.debian.org/debian/ unstable/main libjpeg8-dev ia64 8d-1 [355 kB]
-Get:75 http://spohr.debian.org/debian/ unstable/main liblapack3gf ia64 3.3.1-1 [7288 kB]
-Get:76 http://spohr.debian.org/debian/ unstable/main liblapack-dev ia64 3.3.1-1 [8033 kB]
-Get:77 http://spohr.debian.org/debian/ unstable/main libtinfo-dev ia64 5.9-6 [135 kB]
-Get:78 http://spohr.debian.org/debian/ unstable/main libncurses5-dev ia64 5.9-6 [480 kB]
-Get:79 http://spohr.debian.org/debian/ unstable/main libpaper1 ia64 1.1.24+nmu1 [22.9 kB]
-Get:80 http://spohr.debian.org/debian/ unstable/main libpaper-utils ia64 1.1.24+nmu1 [19.7 kB]
-Get:81 http://spohr.debian.org/debian/ unstable/main libpcre3-dev ia64 1:8.30-4 [405 kB]
-Get:82 http://spohr.debian.org/debian/ unstable/main zlib1g-dev ia64 1:1.2.6.dfsg-2 [251 kB]
-Get:83 http://spohr.debian.org/debian/ unstable/main libpng12-dev ia64 1.2.49-1 [305 kB]
-Get:84 http://spohr.debian.org/debian/ unstable/main libreadline6-dev ia64 6.2-8 [338 kB]
-Get:85 http://spohr.debian.org/debian/ unstable/main libreadline-dev ia64 6.2-8 [890 B]
-Get:86 http://spohr.debian.org/debian/ unstable/main zip ia64 3.0-4 [445 kB]
-Get:87 http://spohr.debian.org/debian/ unstable/main unzip ia64 6.0-6 [264 kB]
-Get:88 http://spohr.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB]
-Get:89 http://spohr.debian.org/debian/ unstable/main tcl8.5 ia64 8.5.11-1 [1908 kB]
-Get:90 http://spohr.debian.org/debian/ unstable/main tk8.5 ia64 8.5.11-1 [1518 kB]
-Get:91 http://spohr.debian.org/debian/ unstable/main r-base-core ia64 2.15.0-1 [21.6 MB]
-Get:92 http://spohr.debian.org/debian/ unstable/main r-base-dev all 2.15.0-1 [3900 B]
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libc-dev-bin libc6.1 libc6.1-dev
+ libncurses5 libstdc++6-4.6-dev libtinfo5 ncurses-bin zlib1g
+12 upgraded, 84 newly installed, 0 to remove and 34 not upgraded.
+Need to get 103 MB/103 MB of archives.
+After this operation, 182 MB of additional disk space will be used.
+Get:1 http://spohr.debian.org/debian/ unstable/main libc6.1-dev ia64 2.17-3 [3398 kB]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main libcroco3 ia64 0.6.8-2 [143 kB]
+Get:3 http://spohr.debian.org/debian/ unstable/main libc-dev-bin ia64 2.17-3 [262 kB]
+Get:4 http://spohr.debian.org/debian/ unstable/main libc6.1 ia64 2.17-3 [4777 kB]
+Get:5 http://spohr.debian.org/debian/ unstable/main libtinfo5 ia64 5.9+20130504-1 [323 kB]
+Get:6 http://spohr.debian.org/debian/ unstable/main libncurses5 ia64 5.9+20130504-1 [167 kB]
+Get:7 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-base-core ia64 3.0.1-1 [22.7 MB]
+Get:8 http://spohr.debian.org/debian/ unstable/main ncurses-bin ia64 5.9+20130504-1 [386 kB]
+Get:9 http://spohr.debian.org/debian/ unstable/main zlib1g ia64 1:1.2.8.dfsg-1 [119 kB]
+Get:10 http://spohr.debian.org/debian/ unstable/main libpipeline1 ia64 1.2.3-1 [49.3 kB]
+Get:11 http://spohr.debian.org/debian/ unstable/main groff-base ia64 1.22.2-2 [831 kB]
+Get:12 http://spohr.debian.org/debian/ unstable/main bsdmainutils ia64 9.0.5 [242 kB]
+Get:13 http://spohr.debian.org/debian/ unstable/main man-db ia64 2.6.3-6 [924 kB]
+Get:14 http://spohr.debian.org/debian/ unstable/main libasprintf0c2 ia64 0.18.1.1-10 [27.7 kB]
+Get:15 http://spohr.debian.org/debian/ unstable/main libmagic1 ia64 1:5.14-1 [235 kB]
+Get:16 http://spohr.debian.org/debian/ unstable/main libpcre3 ia64 1:8.31-2 [300 kB]
+Get:17 http://spohr.debian.org/debian/ unstable/main libxml2 ia64 2.8.0+dfsg1-7+nmu1 [1184 kB]
+Get:18 http://spohr.debian.org/debian/ unstable/main libexpat1 ia64 2.1.0-3 [215 kB]
+Get:19 http://spohr.debian.org/debian/ unstable/main libfreetype6 ia64 2.4.9-1.1 [627 kB]
+Get:20 http://spohr.debian.org/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
+Get:21 http://spohr.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
+Get:22 http://spohr.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:23 http://spohr.debian.org/debian/ unstable/main libfontconfig1 ia64 2.9.0-7.1 [336 kB]
+Get:24 http://spohr.debian.org/debian/ unstable/main libpixman-1-0 ia64 0.26.0-4 [452 kB]
+Get:25 http://spohr.debian.org/debian/ unstable/main libpng12-0 ia64 1.2.49-4 [222 kB]
+Get:26 http://spohr.debian.org/debian/ unstable/main libxau6 ia64 1:1.0.7-1 [20.1 kB]
+Get:27 http://spohr.debian.org/debian/ unstable/main libxdmcp6 ia64 1:1.1.1-1 [29.1 kB]
+Get:28 http://spohr.debian.org/debian/ unstable/main libxcb1 ia64 1.8.1-2 [56.3 kB]
+Get:29 http://spohr.debian.org/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:30 http://spohr.debian.org/debian/ unstable/main libx11-6 ia64 2:1.5.0-1 [1079 kB]
+Get:31 http://spohr.debian.org/debian/ unstable/main libxcb-render0 ia64 1.8.1-2 [19.8 kB]
+Get:32 http://spohr.debian.org/debian/ unstable/main libxcb-shm0 ia64 1.8.1-2 [11.1 kB]
+Get:33 http://spohr.debian.org/debian/ unstable/main libxext6 ia64 2:1.3.1-2 [71.0 kB]
+Get:34 http://spohr.debian.org/debian/ unstable/main libxrender1 ia64 1:0.9.7-1 [40.4 kB]
+Get:35 http://spohr.debian.org/debian/ unstable/main libcairo2 ia64 1.12.14-4 [1309 kB]
+Get:36 http://spohr.debian.org/debian/ unstable/main libffi6 ia64 3.0.13-4 [28.4 kB]
+Get:37 http://spohr.debian.org/debian/ unstable/main libglib2.0-0 ia64 2.36.1-2build1 [2169 kB]
+Get:38 http://spohr.debian.org/debian/ unstable/main libdatrie1 ia64 0.2.6-2 [33.1 kB]
+Get:39 http://spohr.debian.org/debian/ unstable/main libunistring0 ia64 0.9.3-5 [463 kB]
+Get:40 http://spohr.debian.org/debian/ unstable/main libgettextpo0 ia64 0.18.1.1-10 [206 kB]
+Get:41 http://spohr.debian.org/debian/ unstable/main gcc-4.8-base ia64 4.8.0-7 [148 kB]
+Get:42 http://spohr.debian.org/debian/ unstable/main libgfortran3 ia64 4.8.0-7 [474 kB]
+Get:43 http://spohr.debian.org/debian/ unstable/main x11-common all 1:7.7+3 [284 kB]
+Get:44 http://spohr.debian.org/debian/ unstable/main libice6 ia64 2:1.0.8-2 [82.2 kB]
+Get:45 http://spohr.debian.org/debian/ unstable/main libjpeg8 ia64 8d-1 [244 kB]
+Get:46 http://spohr.debian.org/debian/ unstable/main libthai-data all 0.1.19-2 [156 kB]
+Get:47 http://spohr.debian.org/debian/ unstable/main libthai0 ia64 0.1.19-2 [46.4 kB]
+Get:48 http://spohr.debian.org/debian/ unstable/main libxft2 ia64 2.3.1-1 [80.7 kB]
+Get:49 http://spohr.debian.org/debian/ unstable/main fontconfig ia64 2.9.0-7.1 [352 kB]
+Get:50 http://spohr.debian.org/debian/ unstable/main libpango1.0-0 ia64 1.30.0-1 [581 kB]
+Get:51 http://spohr.debian.org/debian/ unstable/main libpaper1 ia64 1.1.24+nmu2 [23.1 kB]
+Get:52 http://spohr.debian.org/debian/ unstable/main libpcrecpp0 ia64 1:8.31-2 [131 kB]
+Get:53 http://spohr.debian.org/debian/ unstable/main libsm6 ia64 2:1.2.1-2 [40.9 kB]
+Get:54 http://spohr.debian.org/debian/ unstable/main libjbig0 ia64 2.0-2 [47.6 kB]
+Get:55 http://spohr.debian.org/debian/ unstable/main libtiff5 ia64 4.0.2-6 [318 kB]
+Get:56 http://spohr.debian.org/debian/ unstable/main libxss1 ia64 1:1.2.2-1 [19.1 kB]
+Get:57 http://spohr.debian.org/debian/ unstable/main libxt6 ia64 1:1.1.3-1 [288 kB]
+Get:58 http://spohr.debian.org/debian/ unstable/main libmpc3 ia64 1.0.1-1 [62.3 kB]
+Get:59 http://spohr.debian.org/debian/ unstable/main file ia64 1:5.14-1 [55.9 kB]
+Get:60 http://spohr.debian.org/debian/ unstable/main gettext-base ia64 0.18.1.1-10 [173 kB]
+Get:61 http://spohr.debian.org/debian/ unstable/main cdbs all 0.4.121 [80.5 kB]
+Get:62 http://spohr.debian.org/debian/ unstable/main libstdc++6-4.6-dev ia64 4.6.4-2 [1870 kB]
+Get:63 http://spohr.debian.org/debian/ unstable/main g++-4.6 ia64 4.6.4-2 [7062 kB]
+Get:64 http://spohr.debian.org/debian/ unstable/main gcc-4.6 ia64 4.6.4-2 [6193 kB]
+Get:65 http://spohr.debian.org/debian/ unstable/main cpp-4.6 ia64 4.6.4-2 [5908 kB]
+Get:66 http://spohr.debian.org/debian/ unstable/main gcc-4.6-base ia64 4.6.4-2 [143 kB]
+Get:67 http://spohr.debian.org/debian/ unstable/main html2text ia64 1.3.2a-15 [134 kB]
+Get:68 http://spohr.debian.org/debian/ unstable/main libasprintf-dev ia64 0.18.1.1-10 [27.4 kB]
+Get:69 http://spohr.debian.org/debian/ unstable/main libgettextpo-dev ia64 0.18.1.1-10 [256 kB]
+Get:70 http://spohr.debian.org/debian/ unstable/main gettext ia64 0.18.1.1-10 [2033 kB]
+Get:71 http://spohr.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:72 http://spohr.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:73 http://spohr.debian.org/debian/ unstable/main debhelper all 9.20130516 [708 kB]
+Get:74 http://spohr.debian.org/debian/ unstable/main gfortran-4.6 ia64 4.6.4-2 [6995 kB]
+Get:75 http://spohr.debian.org/debian/ unstable/main gfortran ia64 4:4.6.3-8 [1124 B]
+Get:76 http://spohr.debian.org/debian/ unstable/main libblas3 ia64 1.2.20110419-5 [335 kB]
+Get:77 http://spohr.debian.org/debian/ unstable/main libblas-dev ia64 1.2.20110419-5 [367 kB]
+Get:78 http://spohr.debian.org/debian/ unstable/main libbz2-dev ia64 1.0.6-4 [51.7 kB]
+Get:79 http://spohr.debian.org/debian/ unstable/main libjpeg8-dev ia64 8d-1 [355 kB]
+Get:80 http://spohr.debian.org/debian/ unstable/main liblapack3 ia64 3.4.2+dfsg-1 [7550 kB]
+Get:81 http://spohr.debian.org/debian/ unstable/main liblapack-dev ia64 3.4.2+dfsg-1 [8319 kB]
+Get:82 http://spohr.debian.org/debian/ unstable/main libtinfo-dev ia64 5.9+20130504-1 [140 kB]
+Get:83 http://spohr.debian.org/debian/ unstable/main libncurses5-dev ia64 5.9+20130504-1 [299 kB]
+Get:84 http://spohr.debian.org/debian/ unstable/main libpaper-utils ia64 1.1.24+nmu2 [19.6 kB]
+Get:85 http://spohr.debian.org/debian/ unstable/main libpcre3-dev ia64 1:8.31-2 [414 kB]
+Get:86 http://spohr.debian.org/debian/ unstable/main zlib1g-dev ia64 1:1.2.8.dfsg-1 [253 kB]
+Get:87 http://spohr.debian.org/debian/ unstable/main libpng12-dev ia64 1.2.49-4 [306 kB]
+Get:88 http://spohr.debian.org/debian/ unstable/main libreadline6-dev ia64 6.2+dfsg-0.1 [265 kB]
+Get:89 http://spohr.debian.org/debian/ unstable/main libreadline-dev ia64 6.2+dfsg-0.1 [896 B]
+Get:90 http://spohr.debian.org/debian/ unstable/main zip ia64 3.0-7 [443 kB]
+Get:91 http://spohr.debian.org/debian/ unstable/main unzip ia64 6.0-9 [266 kB]
+Get:92 http://spohr.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:93 http://spohr.debian.org/debian/ unstable/main tcl8.5 ia64 8.5.11-2 [1906 kB]
+Get:94 http://spohr.debian.org/debian/ unstable/main tk8.5 ia64 8.5.11-2 [1516 kB]
+Get:95 http://spohr.debian.org/debian/ unstable/main r-base-dev all 3.0.1~20130512-1 [3910 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 95.8 MB in 9s (10.6 MB/s)
-(Reading database ... 10668 files and directories currently installed.)
-Preparing to replace ncurses-bin 5.9-4 (using .../ncurses-bin_5.9-6_ia64.deb) ...
+Fetched 103 MB in 12s (8306 kB/s)
+(Reading database ... 10767 files and directories currently installed.)
+Preparing to replace libc6.1-dev:ia64 2.13-38 (using .../libc6.1-dev_2.17-3_ia64.deb) ...
+Unpacking replacement libc6.1-dev:ia64 ...
+Preparing to replace libc-dev-bin 2.13-38 (using .../libc-dev-bin_2.17-3_ia64.deb) ...
+Unpacking replacement libc-dev-bin ...
+Preparing to replace libc6.1:ia64 2.13-38 (using .../libc6.1_2.17-3_ia64.deb) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Unpacking replacement libc6.1:ia64 ...
+Setting up libc6.1:ia64 (2.17-3) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Nothing to restart.
+(Reading database ... 10789 files and directories currently installed.)
+Preparing to replace libtinfo5:ia64 5.9-10 (using .../libtinfo5_5.9+20130504-1_ia64.deb) ...
+Unpacking replacement libtinfo5:ia64 ...
+Setting up libtinfo5:ia64 (5.9+20130504-1) ...
+(Reading database ... 10789 files and directories currently installed.)
+Preparing to replace libncurses5:ia64 5.9-10 (using .../libncurses5_5.9+20130504-1_ia64.deb) ...
+Unpacking replacement libncurses5:ia64 ...
+Setting up libncurses5:ia64 (5.9+20130504-1) ...
+(Reading database ... 10789 files and directories currently installed.)
+Preparing to replace ncurses-bin 5.9-10 (using .../ncurses-bin_5.9+20130504-1_ia64.deb) ...
Unpacking replacement ncurses-bin ...
-Setting up ncurses-bin (5.9-6) ...
-Selecting previously unselected package gcc-4.7-base.
-(Reading database ... 10668 files and directories currently installed.)
-Unpacking gcc-4.7-base (from .../gcc-4.7-base_4.7.0-3_ia64.deb) ...
-Setting up gcc-4.7-base (4.7.0-3) ...
-(Reading database ... 10676 files and directories currently installed.)
-Preparing to replace libgcc1 1:4.6.2-12 (using .../libgcc1_1%3a4.7.0-3_ia64.deb) ...
-Unpacking replacement libgcc1 ...
-Setting up libgcc1 (1:4.7.0-3) ...
-(Reading database ... 10676 files and directories currently installed.)
-Preparing to replace libstdc++6 4.6.2-12 (using .../libstdc++6_4.7.0-3_ia64.deb) ...
-Unpacking replacement libstdc++6 ...
-Setting up libstdc++6 (4.7.0-3) ...
-(Reading database ... 10676 files and directories currently installed.)
-Preparing to replace libtinfo5 5.9-4 (using .../libtinfo5_5.9-6_ia64.deb) ...
-Unpacking replacement libtinfo5 ...
-Setting up libtinfo5 (5.9-6) ...
-(Reading database ... 10676 files and directories currently installed.)
-Preparing to replace libncurses5 5.9-4 (using .../libncurses5_5.9-6_ia64.deb) ...
-Unpacking replacement libncurses5 ...
-Setting up libncurses5 (5.9-6) ...
-(Reading database ... 10676 files and directories currently installed.)
-Preparing to replace zlib1g 1:1.2.3.4.dfsg-3 (using .../zlib1g_1%3a1.2.6.dfsg-2_ia64.deb) ...
-Unpacking replacement zlib1g ...
-Setting up zlib1g (1:1.2.6.dfsg-2) ...
-Selecting previously unselected package libpipeline1.
-(Reading database ... 10676 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_ia64.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.11-1_ia64.deb) ...
-Selecting previously unselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_1%3a8.30-4_ia64.deb) ...
-Selecting previously unselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.1.0-1_ia64.deb) ...
-Selecting previously unselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.9-1_ia64.deb) ...
+Setting up ncurses-bin (5.9+20130504-1) ...
+(Reading database ... 10787 files and directories currently installed.)
+Preparing to replace zlib1g:ia64 1:1.2.7.dfsg-13 (using .../zlib1g_1%3a1.2.8.dfsg-1_ia64.deb) ...
+Unpacking replacement zlib1g:ia64 ...
+Setting up zlib1g:ia64 (1:1.2.8.dfsg-1) ...
+Selecting previously unselected package libpipeline1:ia64.
+(Reading database ... 10787 files and directories currently installed.)
+Unpacking libpipeline1:ia64 (from .../libpipeline1_1.2.3-1_ia64.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.22.2-2_ia64.deb) ...
+Selecting previously unselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_ia64.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.3-6_ia64.deb) ...
+Selecting previously unselected package libasprintf0c2:ia64.
+Unpacking libasprintf0c2:ia64 (from .../libasprintf0c2_0.18.1.1-10_ia64.deb) ...
+Selecting previously unselected package libmagic1:ia64.
+Unpacking libmagic1:ia64 (from .../libmagic1_1%3a5.14-1_ia64.deb) ...
+Selecting previously unselected package libpcre3:ia64.
+Unpacking libpcre3:ia64 (from .../libpcre3_1%3a8.31-2_ia64.deb) ...
+Selecting previously unselected package libxml2:ia64.
+Unpacking libxml2:ia64 (from .../libxml2_2.8.0+dfsg1-7+nmu1_ia64.deb) ...
+Selecting previously unselected package libexpat1:ia64.
+Unpacking libexpat1:ia64 (from .../libexpat1_2.1.0-3_ia64.deb) ...
+Selecting previously unselected package libfreetype6:ia64.
+Unpacking libfreetype6:ia64 (from .../libfreetype6_2.4.9-1.1_ia64.deb) ...
+Selecting previously unselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ...
+Moving old data out of the way
+Selecting previously unselected package fonts-dejavu-core.
+Unpacking fonts-dejavu-core (from .../fonts-dejavu-core_2.33+svn2514-3_all.deb) ...
Selecting previously unselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33+svn2514-3_all.deb) ...
Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
-Selecting previously unselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3.1_ia64.deb) ...
-Selecting previously unselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.4-1_ia64.deb) ...
-Selecting previously unselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.49-1_ia64.deb) ...
-Selecting previously unselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.7-1_ia64.deb) ...
-Selecting previously unselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_ia64.deb) ...
-Selecting previously unselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.8.1-1_ia64.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ...
+Selecting previously unselected package libfontconfig1:ia64.
+Unpacking libfontconfig1:ia64 (from .../libfontconfig1_2.9.0-7.1_ia64.deb) ...
+Selecting previously unselected package libpixman-1-0:ia64.
+Unpacking libpixman-1-0:ia64 (from .../libpixman-1-0_0.26.0-4_ia64.deb) ...
+Selecting previously unselected package libpng12-0:ia64.
+Unpacking libpng12-0:ia64 (from .../libpng12-0_1.2.49-4_ia64.deb) ...
+Selecting previously unselected package libxau6:ia64.
+Unpacking libxau6:ia64 (from .../libxau6_1%3a1.0.7-1_ia64.deb) ...
+Selecting previously unselected package libxdmcp6:ia64.
+Unpacking libxdmcp6:ia64 (from .../libxdmcp6_1%3a1.1.1-1_ia64.deb) ...
+Selecting previously unselected package libxcb1:ia64.
+Unpacking libxcb1:ia64 (from .../libxcb1_1.8.1-2_ia64.deb) ...
Selecting previously unselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
-Selecting previously unselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4_ia64.deb) ...
-Selecting previously unselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.8.1-1_ia64.deb) ...
-Selecting previously unselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.8.1-1_ia64.deb) ...
-Selecting previously unselected package libxrender1.
-Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_ia64.deb) ...
-Selecting previously unselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.12.0-2_ia64.deb) ...
-Selecting previously unselected package libffi5.
-Unpacking libffi5 (from .../libffi5_3.0.10-3_ia64.deb) ...
-Selecting previously unselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.32.0-4_ia64.deb) ...
-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-7_ia64.deb) ...
-Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.5-1_ia64.deb) ...
-Selecting previously unselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.5-3_ia64.deb) ...
-Preparing to replace libquadmath0 4.6.2-12 (using .../libquadmath0_4.7.0-3_ia64.deb) ...
-Unpacking replacement libquadmath0 ...
-Selecting previously unselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.7.0-3_ia64.deb) ...
-Preparing to replace libgomp1 4.6.2-12 (using .../libgomp1_4.7.0-3_ia64.deb) ...
-Unpacking replacement libgomp1 ...
+Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ...
+Selecting previously unselected package libx11-6:ia64.
+Unpacking libx11-6:ia64 (from .../libx11-6_2%3a1.5.0-1_ia64.deb) ...
+Selecting previously unselected package libxcb-render0:ia64.
+Unpacking libxcb-render0:ia64 (from .../libxcb-render0_1.8.1-2_ia64.deb) ...
+Selecting previously unselected package libxcb-shm0:ia64.
+Unpacking libxcb-shm0:ia64 (from .../libxcb-shm0_1.8.1-2_ia64.deb) ...
+Selecting previously unselected package libxext6:ia64.
+Unpacking libxext6:ia64 (from .../libxext6_2%3a1.3.1-2_ia64.deb) ...
+Selecting previously unselected package libxrender1:ia64.
+Unpacking libxrender1:ia64 (from .../libxrender1_1%3a0.9.7-1_ia64.deb) ...
+Selecting previously unselected package libcairo2:ia64.
+Unpacking libcairo2:ia64 (from .../libcairo2_1.12.14-4_ia64.deb) ...
+Selecting previously unselected package libffi6:ia64.
+Unpacking libffi6:ia64 (from .../libffi6_3.0.13-4_ia64.deb) ...
+Selecting previously unselected package libglib2.0-0:ia64.
+Unpacking libglib2.0-0:ia64 (from .../libglib2.0-0_2.36.1-2build1_ia64.deb) ...
+Selecting previously unselected package libcroco3:ia64.
+Unpacking libcroco3:ia64 (from .../libcroco3_0.6.8-2_ia64.deb) ...
+Selecting previously unselected package libdatrie1:ia64.
+Unpacking libdatrie1:ia64 (from .../libdatrie1_0.2.6-2_ia64.deb) ...
+Selecting previously unselected package libunistring0:ia64.
+Unpacking libunistring0:ia64 (from .../libunistring0_0.9.3-5_ia64.deb) ...
+Selecting previously unselected package libgettextpo0:ia64.
+Unpacking libgettextpo0:ia64 (from .../libgettextpo0_0.18.1.1-10_ia64.deb) ...
+Selecting previously unselected package gcc-4.8-base:ia64.
+Unpacking gcc-4.8-base:ia64 (from .../gcc-4.8-base_4.8.0-7_ia64.deb) ...
+Selecting previously unselected package libgfortran3:ia64.
+Unpacking libgfortran3:ia64 (from .../libgfortran3_4.8.0-7_ia64.deb) ...
Selecting previously unselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
-Selecting previously unselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.8-2_ia64.deb) ...
-Selecting previously unselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8d-1_ia64.deb) ...
+Unpacking x11-common (from .../x11-common_1%3a7.7+3_all.deb) ...
+Selecting previously unselected package libice6:ia64.
+Unpacking libice6:ia64 (from .../libice6_2%3a1.0.8-2_ia64.deb) ...
+Selecting previously unselected package libjpeg8:ia64.
+Unpacking libjpeg8:ia64 (from .../libjpeg8_8d-1_ia64.deb) ...
Selecting previously unselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.17-1_all.deb) ...
-Selecting previously unselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.17-1_ia64.deb) ...
-Selecting previously unselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-3_ia64.deb) ...
+Unpacking libthai-data (from .../libthai-data_0.1.19-2_all.deb) ...
+Selecting previously unselected package libthai0:ia64.
+Unpacking libthai0:ia64 (from .../libthai0_0.1.19-2_ia64.deb) ...
+Selecting previously unselected package libxft2:ia64.
+Unpacking libxft2:ia64 (from .../libxft2_2.3.1-1_ia64.deb) ...
Selecting previously unselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-3.1_ia64.deb) ...
-Selecting previously unselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.30.0-1_ia64.deb) ...
-Selecting previously unselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_1%3a8.30-4_ia64.deb) ...
-Selecting previously unselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.1-2_ia64.deb) ...
-Selecting previously unselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.6-2_ia64.deb) ...
-Selecting previously unselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-5_ia64.deb) ...
-Selecting previously unselected package libxext6.
-Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_ia64.deb) ...
-Selecting previously unselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_ia64.deb) ...
-Selecting previously unselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_ia64.deb) ...
-Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_ia64.deb) ...
-Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-7_ia64.deb) ...
-Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.1-2_ia64.deb) ...
-Preparing to replace g++-4.6 4.6.2-12 (using .../g++-4.6_4.6.3-3_ia64.deb) ...
-Unpacking replacement g++-4.6 ...
-Preparing to replace libstdc++6-4.6-dev 4.6.2-12 (using .../libstdc++6-4.6-dev_4.6.3-3_ia64.deb) ...
-Unpacking replacement libstdc++6-4.6-dev ...
-Preparing to replace gcc-4.6 4.6.2-12 (using .../gcc-4.6_4.6.3-3_ia64.deb) ...
-Unpacking replacement gcc-4.6 ...
-Preparing to replace cpp-4.6 4.6.2-12 (using .../cpp-4.6_4.6.3-3_ia64.deb) ...
-Unpacking replacement cpp-4.6 ...
-Preparing to replace gcc-4.6-base 4.6.2-12 (using .../gcc-4.6-base_4.6.3-3_ia64.deb) ...
-Unpacking replacement gcc-4.6-base ...
+Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_ia64.deb) ...
+Selecting previously unselected package libpango1.0-0:ia64.
+Unpacking libpango1.0-0:ia64 (from .../libpango1.0-0_1.30.0-1_ia64.deb) ...
+Selecting previously unselected package libpaper1:ia64.
+Unpacking libpaper1:ia64 (from .../libpaper1_1.1.24+nmu2_ia64.deb) ...
+Selecting previously unselected package libpcrecpp0:ia64.
+Unpacking libpcrecpp0:ia64 (from .../libpcrecpp0_1%3a8.31-2_ia64.deb) ...
+Selecting previously unselected package libsm6:ia64.
+Unpacking libsm6:ia64 (from .../libsm6_2%3a1.2.1-2_ia64.deb) ...
+Selecting previously unselected package libjbig0:ia64.
+Unpacking libjbig0:ia64 (from .../libjbig0_2.0-2_ia64.deb) ...
+Selecting previously unselected package libtiff5:ia64.
+Unpacking libtiff5:ia64 (from .../libtiff5_4.0.2-6_ia64.deb) ...
+Selecting previously unselected package libxss1:ia64.
+Unpacking libxss1:ia64 (from .../libxss1_1%3a1.2.2-1_ia64.deb) ...
+Selecting previously unselected package libxt6:ia64.
+Unpacking libxt6:ia64 (from .../libxt6_1%3a1.1.3-1_ia64.deb) ...
+Selecting previously unselected package libmpc3:ia64.
+Unpacking libmpc3:ia64 (from .../libmpc3_1.0.1-1_ia64.deb) ...
Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.11-1_ia64.deb) ...
+Unpacking file (from .../file_1%3a5.14-1_ia64.deb) ...
Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_ia64.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_ia64.deb) ...
Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.109_all.deb) ...
-Preparing to replace cpp 4:4.6.2-4 (using .../cpp_4%3a4.6.3-4_ia64.deb) ...
-Unpacking replacement cpp ...
+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
+Preparing to replace libstdc++6-4.6-dev 4.6.3-15 (using .../libstdc++6-4.6-dev_4.6.4-2_ia64.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.3-15 (using .../g++-4.6_4.6.4-2_ia64.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.3-15 (using .../gcc-4.6_4.6.4-2_ia64.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace cpp-4.6 4.6.3-15 (using .../cpp-4.6_4.6.4-2_ia64.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace gcc-4.6-base:ia64 4.6.3-15 (using .../gcc-4.6-base_4.6.4-2_ia64.deb) ...
+Unpacking replacement gcc-4.6-base:ia64 ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_ia64.deb) ...
+Selecting previously unselected package libasprintf-dev:ia64.
+Unpacking libasprintf-dev:ia64 (from .../libasprintf-dev_0.18.1.1-10_ia64.deb) ...
+Selecting previously unselected package libgettextpo-dev:ia64.
+Unpacking libgettextpo-dev:ia64 (from .../libgettextpo-dev_0.18.1.1-10_ia64.deb) ...
Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-5_ia64.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-10_ia64.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120410_all.deb) ...
-Selecting previously unselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.35_all.deb) ...
-Preparing to replace gcc 4:4.6.2-4 (using .../gcc_4%3a4.6.3-4_ia64.deb) ...
-Removing old gcc doc directory.
-Unpacking replacement gcc ...
+Unpacking debhelper (from .../debhelper_9.20130516_all.deb) ...
Selecting previously unselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-3_ia64.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.4-2_ia64.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.3-4_ia64.deb) ...
-Selecting previously unselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_ia64.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.3-8_ia64.deb) ...
+Selecting previously unselected package libblas3.
+Unpacking libblas3 (from .../libblas3_1.2.20110419-5_ia64.deb) ...
Selecting previously unselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_ia64.deb) ...
-Selecting previously unselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.6-1_ia64.deb) ...
-Selecting previously unselected package libjpeg8-dev.
-Unpacking libjpeg8-dev (from .../libjpeg8-dev_8d-1_ia64.deb) ...
-Selecting previously unselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_ia64.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_ia64.deb) ...
+Selecting previously unselected package libbz2-dev:ia64.
+Unpacking libbz2-dev:ia64 (from .../libbz2-dev_1.0.6-4_ia64.deb) ...
+Selecting previously unselected package libjpeg8-dev:ia64.
+Unpacking libjpeg8-dev:ia64 (from .../libjpeg8-dev_8d-1_ia64.deb) ...
+Selecting previously unselected package liblapack3.
+Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_ia64.deb) ...
Selecting previously unselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_ia64.deb) ...
-Selecting previously unselected package libtinfo-dev.
-Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-6_ia64.deb) ...
-Selecting previously unselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-6_ia64.deb) ...
-Selecting previously unselected package libpaper1.
-Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_ia64.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.4.2+dfsg-1_ia64.deb) ...
+Selecting previously unselected package libtinfo-dev:ia64.
+Unpacking libtinfo-dev:ia64 (from .../libtinfo-dev_5.9+20130504-1_ia64.deb) ...
+Selecting previously unselected package libncurses5-dev:ia64.
+Unpacking libncurses5-dev:ia64 (from .../libncurses5-dev_5.9+20130504-1_ia64.deb) ...
Selecting previously unselected package libpaper-utils.
-Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_ia64.deb) ...
-Selecting previously unselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_1%3a8.30-4_ia64.deb) ...
-Selecting previously unselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.6.dfsg-2_ia64.deb) ...
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_ia64.deb) ...
+Selecting previously unselected package libpcre3-dev:ia64.
+Unpacking libpcre3-dev:ia64 (from .../libpcre3-dev_1%3a8.31-2_ia64.deb) ...
+Selecting previously unselected package zlib1g-dev:ia64.
+Unpacking zlib1g-dev:ia64 (from .../zlib1g-dev_1%3a1.2.8.dfsg-1_ia64.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-1_ia64.deb) ...
-Selecting previously unselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-8_ia64.deb) ...
-Selecting previously unselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-8_ia64.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_ia64.deb) ...
+Selecting previously unselected package libreadline6-dev:ia64.
+Unpacking libreadline6-dev:ia64 (from .../libreadline6-dev_6.2+dfsg-0.1_ia64.deb) ...
+Selecting previously unselected package libreadline-dev:ia64.
+Unpacking libreadline-dev:ia64 (from .../libreadline-dev_6.2+dfsg-0.1_ia64.deb) ...
Selecting previously unselected package zip.
-Unpacking zip (from .../archives/zip_3.0-4_ia64.deb) ...
+Unpacking zip (from .../archives/zip_3.0-7_ia64.deb) ...
Selecting previously unselected package unzip.
-Unpacking unzip (from .../archives/unzip_6.0-6_ia64.deb) ...
+Unpacking unzip (from .../archives/unzip_6.0-9_ia64.deb) ...
Selecting previously unselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-6_all.deb) ...
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
Selecting previously unselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_ia64.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_ia64.deb) ...
Selecting previously unselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.11-1_ia64.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_ia64.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.15.0-1_ia64.deb) ...
+Unpacking r-base-core (from .../r-base-core_3.0.1-1_ia64.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.15.0-1_all.deb) ...
-Setting up libpipeline1 (1.2.1-1) ...
-Setting up libmagic1 (5.11-1) ...
-Setting up libpcre3 (1:8.30-4) ...
-Setting up libexpat1 (2.1.0-1) ...
-Setting up libfreetype6 (2.4.9-1) ...
-Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3.1) ...
-Setting up libfontconfig1 (2.8.0-3.1) ...
-Setting up libpixman-1-0 (0.24.4-1) ...
-Setting up libpng12-0 (1.2.49-1) ...
-Setting up libxau6 (1:1.0.7-1) ...
-Setting up libxdmcp6 (1:1.1.0-4) ...
-Setting up libxcb1 (1.8.1-1) ...
-Setting up libx11-data (2:1.4.4-4) ...
-Setting up libx11-6 (2:1.4.4-4) ...
-Setting up libxcb-render0 (1.8.1-1) ...
-Setting up libxcb-shm0 (1.8.1-1) ...
-Setting up libxrender1 (1:0.9.6-2) ...
-Setting up libcairo2 (1.12.0-2) ...
-Setting up libffi5 (3.0.10-3) ...
-Setting up libglib2.0-0 (2.32.0-4) ...
+Unpacking r-base-dev (from .../r-base-dev_3.0.1~20130512-1_all.deb) ...
+Setting up libc-dev-bin (2.17-3) ...
+Setting up libc6.1-dev:ia64 (2.17-3) ...
+Setting up libpipeline1:ia64 (1.2.3-1) ...
+Setting up groff-base (1.22.2-2) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.3-6) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:ia64 (0.18.1.1-10) ...
+Setting up libmagic1:ia64 (1:5.14-1) ...
+Setting up libpcre3:ia64 (1:8.31-2) ...
+Setting up libxml2:ia64 (2.8.0+dfsg1-7+nmu1) ...
+Setting up libexpat1:ia64 (2.1.0-3) ...
+Setting up libfreetype6:ia64 (2.4.9-1.1) ...
+Setting up ucf (3.0025+nmu3) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:ia64 (2.9.0-7.1) ...
+Setting up libpixman-1-0:ia64 (0.26.0-4) ...
+Setting up libpng12-0:ia64 (1.2.49-4) ...
+Setting up libxau6:ia64 (1:1.0.7-1) ...
+Setting up libxdmcp6:ia64 (1:1.1.1-1) ...
+Setting up libxcb1:ia64 (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:ia64 (2:1.5.0-1) ...
+Setting up libxcb-render0:ia64 (1.8.1-2) ...
+Setting up libxcb-shm0:ia64 (1.8.1-2) ...
+Setting up libxext6:ia64 (2:1.3.1-2) ...
+Setting up libxrender1:ia64 (1:0.9.7-1) ...
+Setting up libcairo2:ia64 (1.12.14-4) ...
+Setting up libffi6:ia64 (3.0.13-4) ...
+Setting up libglib2.0-0:ia64 (2.36.1-2build1) ...
No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-7) ...
-Setting up libcroco3 (0.6.5-1) ...
-Setting up libdatrie1 (0.2.5-3) ...
-Setting up libquadmath0 (4.7.0-3) ...
-Setting up libgfortran3 (4.7.0-3) ...
-Setting up libgomp1 (4.7.0-3) ...
-Setting up x11-common (1:7.6+12) ...
+Setting up libcroco3:ia64 (0.6.8-2) ...
+Setting up libdatrie1:ia64 (0.2.6-2) ...
+Setting up libunistring0:ia64 (0.9.3-5) ...
+Setting up libgettextpo0:ia64 (0.18.1.1-10) ...
+Setting up gcc-4.8-base:ia64 (4.8.0-7) ...
+Setting up libgfortran3:ia64 (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6 (2:1.0.8-2) ...
-Setting up libjpeg8 (8d-1) ...
-Setting up libthai-data (0.1.17-1) ...
-Setting up libthai0 (0.1.17-1) ...
-Setting up libxft2 (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3.1) ...
-Cleaning up old fontconfig caches... done.
+Setting up libice6:ia64 (2:1.0.8-2) ...
+Setting up libjpeg8:ia64 (8d-1) ...
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:ia64 (0.1.19-2) ...
+Setting up libxft2:ia64 (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.30.0-1) ...
-Setting up libpcrecpp0 (1:8.30-4) ...
-Setting up libsm6 (2:1.2.1-2) ...
-Setting up libtiff4 (3.9.6-2) ...
-Setting up libunistring0 (0.9.3-5) ...
-Setting up libxext6 (2:1.3.0-3) ...
-Setting up libxss1 (1:1.2.1-2) ...
-Setting up libxt6 (1:1.1.1-2) ...
-Setting up bsdmainutils (9.0.1) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
-Building database of manual pages ...
-Setting up gcc-4.6-base (4.6.3-3) ...
-Setting up cpp-4.6 (4.6.3-3) ...
-Setting up gcc-4.6 (4.6.3-3) ...
-Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.109) ...
-Setting up cpp (4:4.6.3-4) ...
+Setting up libpango1.0-0:ia64 (1.30.0-1) ...
+Setting up libpaper1:ia64 (1.1.24+nmu2) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpcrecpp0:ia64 (1:8.31-2) ...
+Setting up libsm6:ia64 (2:1.2.1-2) ...
+Setting up libjbig0:ia64 (2.0-2) ...
+Setting up libtiff5:ia64 (4.0.2-6) ...
+Setting up libxss1:ia64 (1:1.2.2-1) ...
+Setting up libxt6:ia64 (1:1.1.3-1) ...
+Setting up libmpc3:ia64 (1.0.1-1) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
+Setting up gcc-4.6-base:ia64 (4.6.4-2) ...
+Setting up cpp-4.6 (4.6.4-2) ...
+Setting up gcc-4.6 (4.6.4-2) ...
Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-5) ...
+Setting up libasprintf-dev:ia64 (0.18.1.1-10) ...
+Setting up libgettextpo-dev:ia64 (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120410) ...
-Setting up dpatch (2.0.35) ...
-Setting up gcc (4:4.6.3-4) ...
-Setting up gfortran-4.6 (4.6.3-3) ...
-Setting up gfortran (4:4.6.3-4) ...
-update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.6-1) ...
-Setting up libjpeg8-dev (8d-1) ...
-Setting up liblapack3gf (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev (5.9-6) ...
-Setting up libncurses5-dev (5.9-6) ...
-Setting up libpaper1 (1.1.24+nmu1) ...
-
-Creating config file /etc/papersize with new version
-Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcre3-dev (1:8.30-4) ...
-Setting up zlib1g-dev (1:1.2.6.dfsg-2) ...
-Setting up libpng12-dev (1.2.49-1) ...
-Setting up libreadline6-dev (6.2-8) ...
-Setting up libreadline-dev (6.2-8) ...
-Setting up zip (3.0-4) ...
-Setting up unzip (6.0-6) ...
-Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
-Setting up tcl8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.15.0-1) ...
-Setting R_PAPERSIZE_USER default to 'a4'
+Setting up debhelper (9.20130516) ...
+Setting up gfortran-4.6 (4.6.4-2) ...
+Setting up gfortran (4:4.6.3-8) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:ia64 (1.0.6-4) ...
+Setting up libjpeg8-dev:ia64 (8d-1) ...
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:ia64 (5.9+20130504-1) ...
+Setting up libncurses5-dev:ia64 (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:ia64 (1:8.31-2) ...
+Setting up zlib1g-dev:ia64 (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:ia64 (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:ia64 (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.1-1) ...
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.15.0-1) ...
-Setting up g++-4.6 (4.6.3-3) ...
-Setting up libstdc++6-4.6-dev (4.6.3-3) ...
+Setting up r-base-dev (3.0.1~20130512-1) ...
+Setting up g++-4.6 (4.6.4-2) ...
+Setting up libstdc++6-4.6-dev (4.6.4-2) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-The following packages were automatically installed and are no longer required:
- libppl9 libpwl5 libppl-c4 libcloog-ppl0 libgmpxx4ldbl
-Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 55 not upgraded.
+The following package was automatically installed and is no longer required:
+ libmpc2
+Use 'apt-get autoremove' to remove it.
+0 upgraded, 0 newly installed, 0 to remove and 34 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-mckinley ia64 (ia64)
-Toolchain package versions: binutils_2.22-5 dpkg-dev_1.16.1.2 g++-4.6_4.6.3-3 gcc-4.6_4.6.3-3 libc6.1-dev_2.13-26 libstdc++6_4.7.0-3 libstdc++6-4.6-dev_4.6.3-3 linux-libc-dev_3.2.2-1
-Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-5 bsdmainutils_9.0.1 bsdutils_1:2.20.1-1.2 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.109 coreutils_8.13-3 cpp_4:4.6.3-4 cpp-4.6_4.6.3-3 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_9.20120410 debian-archive-keyring_2010.08.28 debianutils_4.2.1 diffutils_1:3.2-1 dpatch_2.0.35 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.11-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.2-4 g++-4.6_4.6.3-3 gcc_4:4.6.3-4 gcc-4.4-base_4.4.6-14 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-3 gcc-4.6-base_4.6.3-3 gcc-4.7-base_4.7.0-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.3-4 gfortran-4.6_4.6.3-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.10-1 groff-base_1.21-7 gzip_1.4-2 hostname_3.10 html2text_1.3.2a-15 initscripts_2.88dsf-22 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-1.2 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-26 libc-dev-bin_2.13-26 libc6.1_2.13-26 libc6.1-dev_2.13-26 libcairo2_1.12.0-2 libclass-isa-perl_0.36-3 libcloog-ppl0_0.15.11-4 libcomerr2_1.42-1 libcroco3_0.6.5-1 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libexpat1_2.1.0-1 libffi5_3.0.10-3 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-3 libgdbm3_1.8.3-10 libgfortran3_4.7.0-3 libglib2.0-0_2.32.0-4 libgmp10_2:5.0.3+dfsg-1 libgmpxx4ldbl_2:5.0.3+dfsg-1 libgomp1_4.7.0-3 libice6_2:1.0.8-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-1.2 libmpc2_0.9-4 libmpfr4_3.1.0-3 libncurses5_5.9-6 libncurses5-dev_5.9-6 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_1:8.30-4 libpcre3-dev_1:8.30-4 libpcrecpp0_1:8.30-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.49-1 libpng12-dev_1.2.49-1 libppl-c4_0.11.2-6 libppl9_0.11.2-6 libpwl5_0.11.2-6 libquadmath0_4.7.0-3 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.0-4.1 libsepol1_2.1.0-1.2 libslang2_2.2.4-6 libsm6_2:1.2.1-2 libss2_1.42-1 libstdc++6_4.7.0-3 libstdc++6-4.6-dev_4.6.3-3 libswitch-perl_2.16-2 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-6 libtinfo5_5.9-6 libunistring0_0.9.3-5 libunwind7_0.99-0.3 libunwind7-dev_0.99-0.3 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-1.2 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.2.2-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28.1 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-16 mount_2.20.1-1.2 multiarch-support_2.13-26 ncurses-base_5.9-4 ncurses-bin_5.9-6 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-3 perl_5.14.2-7 perl-base_5.14.2-7 perl-modules_5.14.2-7 po-debconf_1.0.16+nmu2 r-base-core_2.15.0-1 r-base-dev_2.15.0-1 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22 sysvinit_2.88dsf-22 sysvinit-utils_2.88dsf-22 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2011n-2 ucf_3.0025+nmu2 unzip_6.0-6 util-linux_2.20.1-1.2 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.6_4.6.4-2 gcc-4.6_4.6.4-2 libc6.1-dev_2.17-3 libstdc++6_4.7.2-5 libstdc++6-4.6-dev_4.6.4-2 linux-libc-dev_3.2.39-2
+Package versions: apt_0.9.7.8 base-files_7.1 base-passwd_3.5.26 bash_4.2+dfsg-0.1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.13-3.2 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2 dash_0.5.7-3 debconf_1.5.49 debfoster_2.7-1.2 debhelper_9.20130516 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-1 findutils_4.4.2-5 fontconfig_2.9.0-7.1 fontconfig-config_2.9.0-7.1 fonts-dejavu-core_2.33+svn2514-3 g++_4:4.6.3-8 g++-4.6_4.6.4-2 gcc_4:4.6.3-8 gcc-4.4-base_4.4.7-3 gcc-4.6_4.6.4-2 gcc-4.6-base_4.6.4-2 gcc-4.7-base_4.7.2-5 gcc-4.8-base_4.8.0-7 gettext_0.18.1.1-10 gettext-base_0.18.1.1-10 gfortran_4:4.6.3-8 gfortran-4.6_4.6.4-2 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.14-1 groff-base_1.22.2-2 gzip_1.5-1.1 hostname_3.12 html2text_1.3.2a-15 initscripts_2.88dsf-41 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7.8 libasprintf-dev_0.18.1.1-10 libasprintf0c2_0.18.1.1-10 libattr1_1:2.4.46-8 libblas-dev_1.2.20110419-5 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.3 libbz2-1.0_1.0.6-4 libbz2-dev_1.0.6-4 libc-bin_2.13-38 libc-dev-bin_2.17-3 libc6.1_2.17-3 libc6.1-dev_2.17-3 libcairo2_1.12.14-4 libclass-isa-perl_0.36-5 libcomerr2_1.42.5-1.1 libcroco3_0.6.8-2 libdatrie1_0.2.6-2 libdb5.1_5.1.29-5 libdpkg-perl_1.16.10 libexpat1_2.1.0-3 libffi6_3.0.13-4 libfile-fcntllock-perl_0.14-2 libfontconfig1_2.9.0-7.1 libfreetype6_2.4.9-1.1 libgc1c2_1:7.1-9.1 libgcc1_1:4.7.2-5 libgdbm3_1.8.3-11 libgettextpo-dev_0.18.1.1-10 libgettextpo0_0.18.1.1-10 libgfortran3_4.8.0-7 libglib2.0-0_2.36.1-2build1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.2-5 libice6_2:1.0.8-2 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.4.2+dfsg-1 liblapack3_3.4.2+dfsg-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-1 libmount1_2.20.1-5.3 libmpc2_0.9-4 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libncurses5_5.9+20130504-1 libncurses5-dev_5.9+20130504-1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.31-2 libpcre3-dev_1:8.31-2 libpcrecpp0_1:8.31-2 libpipeline1_1.2.3-1 libpixman-1-0_0.26.0-4 libpng12-0_1.2.49-4 libpng12-dev_1.2.49-4 libquadmath0_4.7.2-5 libreadline-dev_6.2+dfsg-0.1 libreadline6_6.2+dfsg-0.1 libreadline6-dev_6.2+dfsg-0.1 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libss2_1.42.5-1.1 libstdc++6_4.7.2-5 libstdc++6-4.6-dev_4.6.4-2 libswitch-perl_2.16-2 libthai-data_0.1.19-2 libthai0_0.1.19-2 libtiff5_4.0.2-6 libtimedate-perl_1.2000-1 libtinfo-dev_5.9+20130504-1 libtinfo5_5.9+20130504-1 libunistring0_0.9.3-5 libunwind7_0.99-0.3 libunwind7-dev_0.99-0.3 libusb-0.1-4_2:0.1.12-23+nmu1 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.3 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-2 libxcb-shm0_1.8.1-2 libxcb1_1.8.1-2 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-7+nmu1 libxrender1_1:0.9.7-1 libxss1_1:1.2.2-1 libxt6_1:1.1.3-1 linux-libc-dev_3.2.39-2 login_1:4.1.5.1-1 lsb-base_4.1+Debian9 make_3.81-8.2 man-db_2.6.3-6 mawk_1.3.3-17 mount_2.20.1-5.3 multiarch-support_2.13-38 ncurses-base_5.9-10 ncurses-bin_5.9+20130504-1 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-20 perl-base_5.14.2-20 perl-modules_5.14.2-20 po-debconf_1.0.16+nmu2 r-base-core_3.0.1-1 r-base-dev_3.0.1~20130512-1 readline-common_6.2+dfsg-0.1 sed_4.2.1-10 sensible-utils_0.0.7 sudo_1.8.5p2-1+nmu1 sysv-rc_2.88dsf-41 sysvinit_2.88dsf-41 sysvinit-utils_2.88dsf-41 tar_1.26+dfsg-0.1 tcl8.5_8.5.11-2 tk8.5_8.5.11-2 ttf-dejavu-core_2.33+svn2514-3 tzdata_2013b-1 ucf_3.0025+nmu3 unzip_6.0-9 util-linux_2.20.1-5.3 x11-common_1:7.7+3 xdg-utils_1.1.0~rc1+git20111210-7 xz-utils_5.1.1alpha+20120614-2 zip_3.0-7 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -643,12 +650,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Apr 12 02:45:32 2012 UTC using RSA key ID 2295D502
+gpgv: Signature made Thu May 16 14:46:42 2013 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.12.0~dfsg-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.12.0~dfsg
-dpkg-source: info: unpacking r-bioc-limma_3.12.0~dfsg.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.12.0~dfsg-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.16.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.16.3~dfsg
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg-1.debian.tar.gz
Check disc space
────────────────
@@ -658,27 +665,12 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.12.0~dfsg-1
- dpkg-source --before-build r-bioc-limma-3.12.0~dfsg
+dpkg-buildpackage: source version 3.16.3~dfsg-1
+ dpkg-source --before-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: host architecture ia64
fakeroot debian/rules clean
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
-/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-ia64-YAaaWR/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-ia64-YAaaWR/r-bioc-limma-3.12.0~dfsg'
-if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "reverse-patches" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-for dir in debian/patches ; do \
- rm -f $dir/*.log ; \
- done
dh_clean
rm -f debian/r-bioc-limma.substvars
rm -f debian/r-bioc-limma.*.debhelper
@@ -698,27 +690,10 @@ if test -d src; then \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
- debian/rules build
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+ debian/rules build-arch
test -x debian/rules
mkdir -p "."
-/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-ia64-YAaaWR/r-bioc-limma-3.12.0~dfsg'
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-ia64-YAaaWR/r-bioc-limma-3.12.0~dfsg'
-if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-ia64-YAaaWR/r-bioc-limma-3.12.0~dfsg'
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-ia64-YAaaWR/r-bioc-limma-3.12.0~dfsg'
fakeroot debian/rules binary-arch
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
@@ -730,26 +705,26 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
install -d debian/r-bioc-limma/usr/lib/R/site-library
-echo "R:Depends=r-base-core (>= 2.15.0-1)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 3.0.1~20130512-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-ia64-YAaaWR/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-ia64-OggQqZ/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-ia64-YAaaWR/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-ia64-OggQqZ/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-ia64-YAaaWR/r-bioc-limma-3.12.0~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-ia64-OggQqZ/r-bioc-limma-3.16.3~dfsg/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-ia64-YAaaWR/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-ia64-YAaaWR/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-ia64-YAaaWR/r-bioc-limma-3.12.0~dfsg/src'
-installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-ia64-YAaaWR/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-ia64-OggQqZ/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-ia64-OggQqZ/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-ia64-OggQqZ/r-bioc-limma-3.16.3~dfsg/src'
+installing to /build/buildd-r-bioc-limma_3.16.3~dfsg-1-ia64-OggQqZ/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -757,22 +732,27 @@ installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-ia64-YAaaWR/r-bioc-limma-
*** installing help indices
** building package indices
** installing vignettes
- 'limma.Rnw'
** testing if installed package can be loaded
-
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.12.0~dfsg-1-ia64-YAaaWR/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-ia64-YAaaWR/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-ia64-YAaaWR/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.16.3~dfsg-1-ia64-OggQqZ/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-ia64-OggQqZ/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-ia64-OggQqZ/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.12.0~dfsg-1-ia64-YAaaWR/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.16.3~dfsg-1-ia64-OggQqZ/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-ia64-YAaaWR/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-ia64-OggQqZ/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/CITATION
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/doc/*
dh_installdocs -pr-bioc-limma
install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-limma_3.16.3~dfsg-1-ia64-OggQqZ/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/doc/r-bioc-limma \;
+ cp -a debian/README.test debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ chown -R 0:0 debian/r-bioc-limma/usr/share/doc
+ chmod -R go=rX debian/r-bioc-limma/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-limma/usr/share/doc
install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
@@ -804,9 +784,9 @@ dh_strip -pr-bioc-limma
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
cd debian/r-bioc-limma
- chmod a-x usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/changelog.Debian
- gzip -9nf usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/changelog.Debian
- cd '/build/buildd-r-bioc-limma_3.12.0~dfsg-1-ia64-YAaaWR/r-bioc-limma-3.12.0~dfsg'
+ chmod a-x usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save
+ gzip -9nf usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save
+ cd '/build/buildd-r-bioc-limma_3.16.3~dfsg-1-ia64-OggQqZ/r-bioc-limma-3.16.3~dfsg'
dh_fixperms -pr-bioc-limma
find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -836,62 +816,79 @@ dh_md5sums -pr-bioc-limma
chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
dpkg-deb --build debian/r-bioc-limma ..
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.12.0~dfsg-1_ia64.deb'.
- dpkg-genchanges -B -mia64 Build Daemon (alkman) <buildd_ia64-alkman at buildd.debian.org> >../r-bioc-limma_3.12.0~dfsg-1_ia64.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.16.3~dfsg-1_ia64.deb'.
+ dpkg-genchanges -B -mia64 Build Daemon (alkman) <buildd_ia64-alkman at buildd.debian.org> >../r-bioc-limma_3.16.3~dfsg-1_ia64.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.12.0~dfsg
+ dpkg-source --after-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120412-0337
+Build finished at 20130517-1355
-r-bioc-limma_3.12.0~dfsg-1_ia64.changes:
+r-bioc-limma_3.16.3~dfsg-1_ia64.changes:
Format: 1.8
-Date: Thu, 12 Apr 2012 11:40:40 +0900
+Date: Thu, 16 May 2013 15:16:13 +0200
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: ia64
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
Distribution: sid
Urgency: low
Maintainer: ia64 Build Daemon (alkman) <buildd_ia64-alkman at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.12.0~dfsg-1) unstable; urgency=low
+ r-bioc-limma (3.16.3~dfsg-1) unstable; urgency=low
.
[ Charles Plessy ]
- 2d3420e Imported Upstream version 3.12.0~dfsg
- 4bbb8e4 Document LIMMA's copyright as a whole.
+ ff8c6db Imported Upstream version 3.12.1~dfsg
+ b4f097e Effective license is GPL-2, without the '+', as R is GPL-2.
.
[ Andreas Tille ]
- 8a61a4c Obtain references from inst/CITATION
+ * Imported new upstream version 3.16.3~dfsg
+ * debian/control
+ - added myself to Uploaders
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - Fake normalisation as it is done by `cme fix dpkg-control`
+ (the command did actually no change - the control file was
+ brought into shape manually)
+ - Removed versioned dependency of r-base-dev
+ * debian/copyright:
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - checked new upstream version and bumped version number
+ - Add years to Copyright fields
+ * debian/rules: Remove executable flag from doc files
+ * debian/source/format: Add explicit source format specification
Checksums-Sha1:
- 2c1a4e299f75711c8e664bfadf6125418a33e90e 813440 r-bioc-limma_3.12.0~dfsg-1_ia64.deb
+ 9e4539ddb013088cebe15836888793b10fe13918 1620660 r-bioc-limma_3.16.3~dfsg-1_ia64.deb
Checksums-Sha256:
- da8371b861c45b6ca959309795b4c5a14303262adc1d23a6dab2eae0391d8ef5 813440 r-bioc-limma_3.12.0~dfsg-1_ia64.deb
+ 999c92abdc18cd5a433a18e050af27125225bf2d370a497b225ff724ad1ad93d 1620660 r-bioc-limma_3.16.3~dfsg-1_ia64.deb
Files:
- 12f2fe29ecfa8d6b5ec43be4f2abf099 813440 gnu-r optional r-bioc-limma_3.12.0~dfsg-1_ia64.deb
+ ae7c96da0f06a34fdeb7f4bb5f0ecd9c 1620660 gnu-r optional r-bioc-limma_3.16.3~dfsg-1_ia64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.12.0~dfsg-1_ia64.deb
+r-bioc-limma_3.16.3~dfsg-1_ia64.deb
───────────────────────────────────
new debian package, version 2.0.
- size 813440 bytes: control archive= 1539 bytes.
- 774 bytes, 16 lines control
- 2290 bytes, 30 lines md5sums
+ size 1620660 bytes: control archive= 1679 bytes.
+ 783 bytes, 16 lines control
+ 2621 bytes, 34 lines md5sums
Package: r-bioc-limma
- Version: 3.12.0~dfsg-1
+ Version: 3.16.3~dfsg-1
Architecture: ia64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 935
- Depends: libc6.1 (>= 2.2), r-base-core (>= 2.15.0-1)
+ Installed-Size: 1793
+ Depends: libc6.1 (>= 2.2), r-base-core (>= 3.0.1~20130512-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -903,51 +900,56 @@ r-bioc-limma_3.12.0~dfsg-1_ia64.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/share/
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 683 2012-04-12 03:37 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 27998 2012-03-30 22:32 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 2457 2012-04-12 03:37 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 264 2012-04-12 03:37 ./usr/share/doc/r-bioc-limma/README.Debian
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/lib/
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/lib/R/
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 9754 2012-04-12 03:37 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 1179 2012-04-12 03:37 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 35015 2012-04-12 03:37 ./usr/lib/R/site-library/limma/html/00Index.html
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 2431 2012-04-12 03:37 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 6317 2012-04-12 03:37 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 3341 2012-04-12 03:37 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 472501 2012-04-12 03:37 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 1372 2012-04-12 03:37 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 3989 2012-04-12 03:37 ./usr/lib/R/site-library/limma/NEWS.Rd
--rwxr-xr-x root/root 1230 2012-04-12 03:37 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/lib/R/site-library/limma/doc/
--rw-r--r-- root/root 42743 2012-04-12 03:37 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 1711 2012-04-12 03:37 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rwxr-xr-x root/root 673 2012-04-12 03:37 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 91993 2012-04-12 03:37 ./usr/lib/R/site-library/limma/doc/changelog.txt
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 3831 2012-04-12 03:37 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 202044 2012-04-12 03:37 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 383 2012-04-12 03:37 ./usr/lib/R/site-library/limma/R/limma
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 23480 2012-04-12 03:37 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 521 2012-04-12 03:37 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 220 2012-04-12 03:37 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 2943 2012-04-12 03:37 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 5727 2012-04-12 03:37 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 6157 2012-04-12 03:37 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 1056 2012-04-12 03:37 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 969 2012-04-12 03:37 ./usr/lib/R/site-library/limma/DESCRIPTION
--rw-r--r-- root/root 1901 2012-04-12 03:37 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2013-05-17 13:54 ./
+drwxr-xr-x root/root 0 2013-05-17 13:54 ./usr/
+drwxr-xr-x root/root 0 2013-05-17 13:54 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-17 13:54 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-17 13:55 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 1153 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 31097 2013-05-02 00:02 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 2605 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 264 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 437 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.test
+drwxr-xr-x root/root 0 2013-05-17 13:55 ./usr/share/doc/r-bioc-limma/tests/
+-rw-r--r-- root/root 14649 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save.gz
+-rw-r--r-- root/root 2097 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.R.gz
+drwxr-xr-x root/root 0 2013-05-17 13:54 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-17 13:54 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-17 13:54 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-17 13:54 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 10085 2013-05-17 13:54 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2013-05-17 13:54 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2013-05-17 13:54 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 37337 2013-05-17 13:54 ./usr/lib/R/site-library/limma/html/00Index.html
+drwxr-xr-x root/root 0 2013-05-17 13:54 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 2567 2013-05-17 13:54 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 6703 2013-05-17 13:54 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 3414 2013-05-17 13:54 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 494694 2013-05-17 13:54 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 1406 2013-05-17 13:54 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 11214 2013-05-17 13:54 ./usr/lib/R/site-library/limma/NEWS.Rd
+-rw-r--r-- root/root 963 2013-05-17 13:54 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2013-05-17 13:54 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 806089 2013-05-17 13:54 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 45597 2013-05-17 13:54 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 1711 2013-05-17 13:54 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 673 2013-05-17 13:54 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 102936 2013-05-17 13:54 ./usr/lib/R/site-library/limma/doc/changelog.txt
+drwxr-xr-x root/root 0 2013-05-17 13:54 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 4119 2013-05-17 13:54 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 206551 2013-05-17 13:54 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 1056 2013-05-17 13:54 ./usr/lib/R/site-library/limma/R/limma
+drwxr-xr-x root/root 0 2013-05-17 13:55 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 23480 2013-05-17 13:55 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2013-05-17 13:54 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 541 2013-05-17 13:54 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 219 2013-05-17 13:54 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 3089 2013-05-17 13:54 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 5944 2013-05-17 13:54 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 6375 2013-05-17 13:54 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 1070 2013-05-17 13:54 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 990 2013-05-17 13:54 ./usr/lib/R/site-library/limma/DESCRIPTION
+-rw-r--r-- root/root 2046 2013-05-17 13:54 ./usr/lib/R/site-library/limma/NAMESPACE
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -961,7 +963,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-ia64-sbuild-6390737b-2e8d-4b1f-b1b0-d205821cc1f1/build/buildd-r-bioc-limma_3.12.0~dfsg-1-ia64-YAaaWR
+Purging /var/lib/schroot/mount/sid-ia64-sbuild-b256aba1-d2f3-433c-a2c0-e93c0e9a6ca5/build/buildd-r-bioc-limma_3.16.3~dfsg-1-ia64-OggQqZ
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -969,19 +971,19 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: ia64
-Build-Space: 5952
-Build-Time: 42
+Build-Space: 8836
+Build-Time: 41
Distribution: sid
-Install-Time: 237
-Job: r-bioc-limma_3.12.0~dfsg-1
+Install-Time: 246
+Job: r-bioc-limma_3.16.3~dfsg-1
Package: r-bioc-limma
-Package-Time: 343
-Source-Version: 3.12.0~dfsg-1
-Space: 5952
+Package-Time: 340
+Source-Version: 3.16.3~dfsg-1
+Space: 8836
Status: successful
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120412-0337
-Build needed 00:05:43, 5952k disc space
-Signature with key '94AE7BC0' requested:
+Finished at 20130517-1355
+Build needed 00:05:40, 8836k disc space
+Signature with key '7913FDBB' requested:
diff --git a/info b/info
index fc398c5..edf9cad 100644
--- a/info
+++ b/info
@@ -1,17 +1,13 @@
-i386~1334201561~sid~successful
-s390~1334201574~sid~successful
-s390x~1334201663~sid~successful
-powerpc~1334201744~sid~successful
-ia64~1334201885~sid~successful
-sparc~1334201893~sid~successful
-armhf~1334202094~sid~failed
-kfreebsd-i386~1334204030~sid~successful
-mips~1334206907~sid~successful
-mipsel~1334207377~sid~successful
-hurd-i386~1334208640~sid~successful
-armel~1334209262~sid~failed
-kfreebsd-amd64~1334211610~sid~successful
-armhf~1342353733~sid~failed
-armel~1342377832~sid~failed
-armhf~1342798053~sid~successful
-armel~1342799489~sid~successful
+powerpc~1368718837~sid~successful
+i386~1368719016~sid~successful
+armhf~1368719096~sid~successful
+sparc~1368748329~sid~successful
+kfreebsd-amd64~1368795170~sid~successful
+hurd-i386~1368795361~sid~successful
+kfreebsd-i386~1368795980~sid~successful
+ia64~1368798926~sid~successful
+s390~1368799974~sid~successful
+s390x~1368800079~sid~successful
+mips~1368802607~sid~successful
+armel~1368803692~sid~successful
+mipsel~1368815485~sid~successful
diff --git a/kfreebsd-amd64.log b/kfreebsd-amd64.log
index fb1b2cf..abc8529 100644
--- a/kfreebsd-amd64.log
+++ b/kfreebsd-amd64.log
@@ -1,78 +1,66 @@
-From buildd at fasch.debian.org Thu Apr 12 06:20:09 2012
-Return-path: <buildd at fasch.debian.org>
+From buildd at fano.debian.org Fri May 17 12:52:50 2013
+Return-path: <buildd at fano.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=merikanto.debian.org,
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at fasch.debian.org>)
- id 1SIDO5-0000v3-KL
- for logs at buildd.debian.org; Thu, 12 Apr 2012 06:20:09 +0000
-Received: from fasch.debian.org ([194.177.211.201])
+ (Exim 4.72) (envelope-from <buildd at fano.debian.org>)
+ id 1UdK9R-0005M9-Rt
+ for logs at buildd.debian.org; Fri, 17 May 2013 12:52:50 +0000
+Received: from fano.debian.org ([206.12.19.110])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=fasch.debian.org, EMAIL=hostmaster at fasch.debian.org (verified)
+ CN=fano.debian.org, EMAIL=hostmaster at fano.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at fasch.debian.org>)
- id 1SIDO4-0001sc-NC; Thu, 12 Apr 2012 06:20:08 +0000
-Received: from buildd by fasch.debian.org with local (Exim 4.72)
- (envelope-from <buildd at fasch.debian.org>)
- id 1SIDO3-000GZt-UK; Thu, 12 Apr 2012 06:20:07 +0000
-Message-Id: <E1SIDO3-000GZt-UK at fasch.debian.org>
+ (Exim 4.72) (envelope-from <buildd at fano.debian.org>)
+ id 1UdK9Q-0000kS-GZ; Fri, 17 May 2013 12:52:49 +0000
+Received: from buildd by fano.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at fano.debian.org>)
+ id 1UdK9O-000Gwu-8u; Fri, 17 May 2013 12:52:46 +0000
+Message-Id: <E1UdK9O-000Gwu-8u at fano.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Thu, 12 Apr 2012 06:20:07 +0000
-From: buildd on fasch <buildd at fasch.debian.org>
-To: logs at buildd.debian.org,aurelien at aurel32.net,christoph at debian.org
-Subject: Log for successful build of r-bioc-limma_3.12.0~dfsg-1 on
+Date: Fri, 17 May 2013 12:52:46 +0000
+From: buildd on fano <buildd at fano.debian.org>
+To: logs at buildd.debian.org,christoph at debian.org
+Subject: Log for successful build of r-bioc-limma_3.16.3~dfsg-1 on
kfreebsd-amd64 (dist=sid)
-Key-Id: 94C0145B
+Key-Id: 1B08409D
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on fasch.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on fano.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.12.0~dfsg-1 (kfreebsd-amd64) 12 Apr 2012 06:13 ║
+║ r-bioc-limma 3.16.3~dfsg-1 (kfreebsd-amd64) 17 May 2013 12:48 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.12.0~dfsg-1
-Source Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
+Source Version: 3.16.3~dfsg-1
Architecture: kfreebsd-amd64
-Hit http://ftp.gr.debian.org sid InRelease
-Hit http://ftp.gr.debian.org sid/main Sources/DiffIndex
-Hit http://incoming.debian.org sid InRelease
-Ign http://incoming.debian.org InRelease
-Hit http://ftp.gr.debian.org sid/contrib Sources/DiffIndex
-Hit http://ftp.gr.debian.org sid/non-free Sources/DiffIndex
-Hit http://ftp.gr.debian.org sid/main kfreebsd-amd64 Packages/DiffIndex
-Hit http://ftp.gr.debian.org sid/contrib kfreebsd-amd64 Packages/DiffIndex
-Hit http://ftp.gr.debian.org sid/non-free kfreebsd-amd64 Packages/DiffIndex
-Ign http://ftp.gr.debian.org sid/contrib TranslationIndex
-Hit http://ftp.gr.debian.org sid/main TranslationIndex
-Ign http://ftp.gr.debian.org sid/non-free TranslationIndex
-Hit http://incoming.debian.org Release.gpg
-Hit http://ftp.gr.debian.org sid/non-free kfreebsd-amd64 Packages
-Hit http://ftp.gr.debian.org sid/contrib Translation-en
-Hit http://ftp.gr.debian.org sid/main Translation-en
-Hit http://ftp.gr.debian.org sid/non-free Translation-en
-Hit http://incoming.debian.org sid/main Sources/DiffIndex
-Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
-Hit http://incoming.debian.org sid/non-free Sources/DiffIndex
-Hit http://incoming.debian.org sid/main kfreebsd-amd64 Packages/DiffIndex
-Hit http://incoming.debian.org sid/contrib kfreebsd-amd64 Packages/DiffIndex
-Hit http://incoming.debian.org sid/non-free kfreebsd-amd64 Packages/DiffIndex
-Ign http://incoming.debian.org sid/contrib TranslationIndex
-Hit http://incoming.debian.org sid/main TranslationIndex
-Ign http://incoming.debian.org sid/non-free TranslationIndex
-Hit http://incoming.debian.org Release
-Hit http://incoming.debian.org sid/non-free kfreebsd-amd64 Packages
-Hit http://incoming.debian.org sid/contrib Translation-en
-Hit http://incoming.debian.org sid/main Translation-en
-Hit http://incoming.debian.org sid/non-free Translation-en
-Hit http://incoming.debian.org Sources
-Hit http://incoming.debian.org Packages
-Ign http://incoming.debian.org Translation-en
+Get:1 http://incoming.debian.org unstable Release.gpg [1571 B]
+Get:2 http://incoming.debian.org buildd-unstable Release.gpg [1571 B]
+Get:3 http://incoming.debian.org unstable Release [203 kB]
+Get:4 http://incoming.debian.org buildd-unstable Release [109 kB]
+Get:5 http://incoming.debian.org unstable/main Sources [6729 kB]
+Get:6 http://mirror-ubc.debian.org unstable Release.gpg [1571 B]
+Get:7 http://mirror-ubc.debian.org unstable Release [203 kB]
+Get:8 http://mirror-ubc.debian.org unstable/main Sources [6729 kB]
+Get:9 http://mirror-ubc.debian.org unstable/contrib Sources [53.7 kB]
+Get:10 http://mirror-ubc.debian.org unstable/non-free Sources [103 kB]
+Get:11 http://mirror-ubc.debian.org unstable/main kfreebsd-amd64 Packages [5917 kB]
+Get:12 http://mirror-ubc.debian.org unstable/contrib kfreebsd-amd64 Packages [36.7 kB]
+Get:13 http://incoming.debian.org unstable/contrib Sources [53.7 kB]
+Get:14 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:15 http://incoming.debian.org unstable/main kfreebsd-amd64 Packages [5917 kB]
+Get:16 http://incoming.debian.org unstable/contrib kfreebsd-amd64 Packages [36.7 kB]
+Get:17 http://incoming.debian.org buildd-unstable/main Sources [107 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib Sources [873 B]
+Get:19 http://incoming.debian.org buildd-unstable/non-free Sources [2683 B]
+Get:20 http://incoming.debian.org buildd-unstable/main kfreebsd-amd64 Packages [59.8 kB]
+Get:21 http://incoming.debian.org buildd-unstable/contrib kfreebsd-amd64 Packages [14 B]
+Fetched 26.4 MB in 13s (1968 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -93,11 +81,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 288 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (dsc) [2030 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (tar) [283 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (diff) [3098 B]
-Fetched 288 kB in 1s (181 kB/s)
+Need to get 1058 kB of source archives.
+Get:1 http://mirror-ubc.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (dsc) [1409 B]
+Get:2 http://mirror-ubc.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (tar) [1052 kB]
+Get:3 http://mirror-ubc.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (diff) [4167 B]
+Fetched 1058 kB in 2s (361 kB/s)
Download complete and in download only mode
Check arch
@@ -110,352 +98,650 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.2-1)
+build-essential: missing
+fakeroot: missing
Checking for dependency conflicts...
-Installing positive dependencies:
+Installing positive dependencies: build-essential fakeroot
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
+The following extra packages will be installed:
+ binutils bzip2 cpp cpp-4.7 dpkg-dev g++ g++-4.7 gcc gcc-4.7 gcc-4.7-base
+ gcc-4.8-base kfreebsd-kernel-headers libc-dev-bin libc0.1 libc0.1-dev
+ libclass-isa-perl libdpkg-perl libgcc-4.7-dev libgcc1 libgmp10 libgomp1
+ libmpc3 libmpfr4 libquadmath0 libstdc++6 libstdc++6-4.7-dev libswitch-perl
+ libtimedate-perl make patch perl perl-modules
+Suggested packages:
+ binutils-doc bzip2-doc cpp-doc gcc-4.7-locales debian-keyring g++-multilib
+ g++-4.7-multilib gcc-4.7-doc libstdc++6-4.7-dbg gcc-multilib manpages-dev
+ autoconf automake1.9 libtool flex bison gdb gcc-doc gcc-4.7-multilib
+ libmudflap0-4.7-dev libgcc1-dbg libgomp1-dbg libitm1-dbg libquadmath0-dbg
+ libmudflap0-dbg libcloog-ppl0 libppl-c4 libppl9 libpwl5 glibc-doc
+ libstdc++6-4.7-doc make-doc ed diffutils-doc perl-doc
+ libterm-readline-gnu-perl libterm-readline-perl-perl libpod-plainer-perl
+Recommended packages:
+ libalgorithm-merge-perl libc6-dev libc-dev libfile-fcntllock-perl netbase
+The following NEW packages will be installed:
+ binutils build-essential bzip2 cpp cpp-4.7 dpkg-dev fakeroot g++ g++-4.7 gcc
+ gcc-4.7 gcc-4.8-base kfreebsd-kernel-headers libc-dev-bin libc0.1-dev
+ libclass-isa-perl libdpkg-perl libgcc-4.7-dev libgmp10 libgomp1 libmpc3
+ libmpfr4 libquadmath0 libstdc++6-4.7-dev libswitch-perl libtimedate-perl
+ make patch perl perl-modules
+The following packages will be upgraded:
+ gcc-4.7-base libc0.1 libgcc1 libstdc++6
+4 upgraded, 30 newly installed, 0 to remove and 19 not upgraded.
+Need to get 26.8 MB/43.6 MB of archives.
+After this operation, 121 MB of additional disk space will be used.
+Get:1 http://mirror-ubc.debian.org/debian/ unstable/main gcc-4.8-base kfreebsd-amd64 4.8.0-7 [148 kB]
+Get:2 http://mirror-ubc.debian.org/debian/ unstable/main libc0.1 kfreebsd-amd64 2.17-3 [4153 kB]
+Get:3 http://mirror-ubc.debian.org/debian/ unstable/main libgcc1 kfreebsd-amd64 1:4.8.0-7 [43.3 kB]
+Get:4 http://mirror-ubc.debian.org/debian/ unstable/main libstdc++6 kfreebsd-amd64 4.8.0-7 [336 kB]
+Get:5 http://mirror-ubc.debian.org/debian/ unstable/main libgmp10 kfreebsd-amd64 2:5.1.1+dfsg-3 [272 kB]
+Get:6 http://mirror-ubc.debian.org/debian/ unstable/main libgomp1 kfreebsd-amd64 4.8.0-7 [26.8 kB]
+Get:7 http://mirror-ubc.debian.org/debian/ unstable/main libquadmath0 kfreebsd-amd64 4.8.0-7 [139 kB]
+Get:8 http://mirror-ubc.debian.org/debian/ unstable/main libmpc3 kfreebsd-amd64 1.0.1-1 [45.8 kB]
+Get:9 http://mirror-ubc.debian.org/debian/ unstable/main gcc-4.7-base kfreebsd-amd64 4.7.3-4 [149 kB]
+Get:10 http://mirror-ubc.debian.org/debian/ unstable/main libc-dev-bin kfreebsd-amd64 2.17-3 [233 kB]
+Get:11 http://mirror-ubc.debian.org/debian/ unstable/main libc0.1-dev kfreebsd-amd64 2.17-3 [2533 kB]
+Get:12 http://mirror-ubc.debian.org/debian/ unstable/main cpp-4.7 kfreebsd-amd64 4.7.3-4 [5286 kB]
+Get:13 http://mirror-ubc.debian.org/debian/ unstable/main libgcc-4.7-dev kfreebsd-amd64 4.7.3-4 [301 kB]
+Get:14 http://mirror-ubc.debian.org/debian/ unstable/main gcc-4.7 kfreebsd-amd64 4.7.3-4 [5689 kB]
+Get:15 http://mirror-ubc.debian.org/debian/ unstable/main libstdc++6-4.7-dev kfreebsd-amd64 4.7.3-4 [1647 kB]
+Get:16 http://mirror-ubc.debian.org/debian/ unstable/main g++-4.7 kfreebsd-amd64 4.7.3-4 [5752 kB]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 26.8 MB in 17s (1543 kB/s)
+Selecting previously unselected package gcc-4.8-base:kfreebsd-amd64.
+(Reading database ... 6744 files and directories currently installed.)
+Unpacking gcc-4.8-base:kfreebsd-amd64 (from .../gcc-4.8-base_4.8.0-7_kfreebsd-amd64.deb) ...
+Setting up gcc-4.8-base:kfreebsd-amd64 (4.8.0-7) ...
+(Reading database ... 6751 files and directories currently installed.)
+Preparing to replace libc0.1:kfreebsd-amd64 2.13-38 (using .../libc0.1_2.17-3_kfreebsd-amd64.deb) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Unpacking replacement libc0.1:kfreebsd-amd64 ...
+Setting up libc0.1:kfreebsd-amd64 (2.17-3) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Nothing to restart.
+(Reading database ... 6757 files and directories currently installed.)
+Preparing to replace libgcc1:kfreebsd-amd64 1:4.7.2-5 (using .../libgcc1_1%3a4.8.0-7_kfreebsd-amd64.deb) ...
+Unpacking replacement libgcc1:kfreebsd-amd64 ...
+Setting up libgcc1:kfreebsd-amd64 (1:4.8.0-7) ...
+(Reading database ... 6757 files and directories currently installed.)
+Preparing to replace libstdc++6:kfreebsd-amd64 4.7.2-5 (using .../libstdc++6_4.8.0-7_kfreebsd-amd64.deb) ...
+Unpacking replacement libstdc++6:kfreebsd-amd64 ...
+Setting up libstdc++6:kfreebsd-amd64 (4.8.0-7) ...
+Selecting previously unselected package libgmp10:kfreebsd-amd64.
+(Reading database ... 6757 files and directories currently installed.)
+Unpacking libgmp10:kfreebsd-amd64 (from .../libgmp10_2%3a5.1.1+dfsg-3_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libgomp1:kfreebsd-amd64.
+Unpacking libgomp1:kfreebsd-amd64 (from .../libgomp1_4.8.0-7_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libmpfr4:kfreebsd-amd64.
+Unpacking libmpfr4:kfreebsd-amd64 (from .../libmpfr4_3.1.1-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libquadmath0:kfreebsd-amd64.
+Unpacking libquadmath0:kfreebsd-amd64 (from .../libquadmath0_4.8.0-7_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libmpc3:kfreebsd-amd64.
+Unpacking libmpc3:kfreebsd-amd64 (from .../libmpc3_1.0.1-1_kfreebsd-amd64.deb) ...
+Preparing to replace gcc-4.7-base:kfreebsd-amd64 4.7.2-5 (using .../gcc-4.7-base_4.7.3-4_kfreebsd-amd64.deb) ...
+Unpacking replacement gcc-4.7-base:kfreebsd-amd64 ...
+Selecting previously unselected package bzip2.
+Unpacking bzip2 (from .../bzip2_1.0.6-4_kfreebsd-amd64.deb) ...
+Selecting previously unselected package kfreebsd-kernel-headers.
+Unpacking kfreebsd-kernel-headers (from .../kfreebsd-kernel-headers_0.83_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libclass-isa-perl.
+Unpacking libclass-isa-perl (from .../libclass-isa-perl_0.36-5_all.deb) ...
+Selecting previously unselected package perl-modules.
+Unpacking perl-modules (from .../perl-modules_5.14.2-21_all.deb) ...
+Selecting previously unselected package perl.
+Unpacking perl (from .../perl_5.14.2-21_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libswitch-perl.
+Unpacking libswitch-perl (from .../libswitch-perl_2.16-2_all.deb) ...
+Selecting previously unselected package patch.
+Unpacking patch (from .../patch_2.6.1-3_kfreebsd-amd64.deb) ...
+Selecting previously unselected package binutils.
+Unpacking binutils (from .../binutils_2.22-8_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libc-dev-bin.
+Unpacking libc-dev-bin (from .../libc-dev-bin_2.17-3_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libc0.1-dev:kfreebsd-amd64.
+Unpacking libc0.1-dev:kfreebsd-amd64 (from .../libc0.1-dev_2.17-3_kfreebsd-amd64.deb) ...
+Selecting previously unselected package cpp-4.7.
+Unpacking cpp-4.7 (from .../cpp-4.7_4.7.3-4_kfreebsd-amd64.deb) ...
+Selecting previously unselected package cpp.
+Unpacking cpp (from .../cpp_4%3a4.7.2-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libgcc-4.7-dev:kfreebsd-amd64.
+Unpacking libgcc-4.7-dev:kfreebsd-amd64 (from .../libgcc-4.7-dev_4.7.3-4_kfreebsd-amd64.deb) ...
+Selecting previously unselected package gcc-4.7.
+Unpacking gcc-4.7 (from .../gcc-4.7_4.7.3-4_kfreebsd-amd64.deb) ...
+Selecting previously unselected package gcc.
+Unpacking gcc (from .../gcc_4%3a4.7.2-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libstdc++6-4.7-dev:kfreebsd-amd64.
+Unpacking libstdc++6-4.7-dev:kfreebsd-amd64 (from .../libstdc++6-4.7-dev_4.7.3-4_kfreebsd-amd64.deb) ...
+Selecting previously unselected package g++-4.7.
+Unpacking g++-4.7 (from .../g++-4.7_4.7.3-4_kfreebsd-amd64.deb) ...
+Selecting previously unselected package g++.
+Unpacking g++ (from .../g++_4%3a4.7.2-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package make.
+Unpacking make (from .../make_3.81-8.2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libtimedate-perl.
+Unpacking libtimedate-perl (from .../libtimedate-perl_1.2000-1_all.deb) ...
+Selecting previously unselected package libdpkg-perl.
+Unpacking libdpkg-perl (from .../libdpkg-perl_1.16.10_all.deb) ...
+Selecting previously unselected package dpkg-dev.
+Unpacking dpkg-dev (from .../dpkg-dev_1.16.10_all.deb) ...
+Selecting previously unselected package build-essential.
+Unpacking build-essential (from .../build-essential_11.6_kfreebsd-amd64.deb) ...
+Selecting previously unselected package fakeroot.
+Unpacking fakeroot (from .../fakeroot_1.18.4-2_kfreebsd-amd64.deb) ...
+Setting up libgmp10:kfreebsd-amd64 (2:5.1.1+dfsg-3) ...
+Setting up libgomp1:kfreebsd-amd64 (4.8.0-7) ...
+Setting up libmpfr4:kfreebsd-amd64 (3.1.1-1) ...
+Setting up libquadmath0:kfreebsd-amd64 (4.8.0-7) ...
+Setting up libmpc3:kfreebsd-amd64 (1.0.1-1) ...
+Setting up gcc-4.7-base:kfreebsd-amd64 (4.7.3-4) ...
+Setting up bzip2 (1.0.6-4) ...
+Setting up kfreebsd-kernel-headers (0.83) ...
+Setting up libclass-isa-perl (0.36-5) ...
+Setting up patch (2.6.1-3) ...
+Setting up binutils (2.22-8) ...
+Setting up libc-dev-bin (2.17-3) ...
+Setting up libc0.1-dev:kfreebsd-amd64 (2.17-3) ...
+Setting up cpp-4.7 (4.7.3-4) ...
+Setting up cpp (4:4.7.2-1) ...
+Setting up libgcc-4.7-dev:kfreebsd-amd64 (4.7.3-4) ...
+Setting up gcc-4.7 (4.7.3-4) ...
+Setting up gcc (4:4.7.2-1) ...
+Setting up libstdc++6-4.7-dev:kfreebsd-amd64 (4.7.3-4) ...
+Setting up g++-4.7 (4.7.3-4) ...
+Setting up g++ (4:4.7.2-1) ...
+update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
+Setting up make (3.81-8.2) ...
+Setting up fakeroot (1.18.4-2) ...
+update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode
+Setting up libswitch-perl (2.16-2) ...
+Setting up perl-modules (5.14.2-21) ...
+Setting up perl (5.14.2-21) ...
+update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode
+Setting up libtimedate-perl (1.2000-1) ...
+Setting up libdpkg-perl (1.16.10) ...
+Setting up dpkg-dev (1.16.10) ...
+Setting up build-essential (11.6) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 19 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, libc-bin, login, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev
Checking for already installed dependencies...
-base-files: already installed (6.7)
-base-passwd: already installed (3.5.24)
-bash: already installed (4.2-1)
-coreutils: already installed (8.13-3.1)
+base-files: already installed (7.1)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2+dfsg-1)
+bsdutils: already installed (1:2.20.1-5.3)
+coreutils: already installed (8.13-3.3)
dash: already installed (0.5.7-3)
-debianutils: already installed (4.2.2)
-diffutils: already installed (1:3.2-2)
-dpkg: already installed (1.16.2)
-e2fsprogs: already installed (1.42.2-1)
-findutils: already installed (4.4.2-4)
-freebsd-utils: already installed (9.0+ds1-1)
-grep: already installed (2.10-1)
-gzip: already installed (1.4-5)
-hostname: already installed (3.11)
-ncurses-base: already installed (5.9-4)
-ncurses-bin: already installed (5.9-6)
-perl-base: already installed (5.14.2-9)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.5-1)
-sysvinit-utils: already installed (2.88dsf-22.1)
-sysvinit: already installed (2.88dsf-22.1)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-4)
-util-linux: already installed (2.20.1-4)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1.1)
+findutils: already installed (4.4.2-5)
+freebsd-utils: already installed (9.0+ds1-11)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+libc-bin: already installed (2.13-38)
+login: already installed (1:4.1.5.1-1)
+ncurses-base: already installed (5.9-10)
+ncurses-bin: already installed (5.9-10)
+perl-base: already installed (5.14.2-21)
+sed: already installed (4.2.1-10)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-5)
+util-linux: already installed (2.20.1-5.3)
libc6-dev: already installed (~*=PROVIDED=*=)
-gcc: already installed (4:4.6.3-4 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-4 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.2 >= 1.13.5 is satisfied)
+gcc: already installed (4:4.7.2-1 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.7.2-1 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120410
+Using default version 9.20130516
cdbs: missing
r-base-dev: missing
-Using default version 2.15.0-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- dpatch file fontconfig fontconfig-config gettext gettext-base gfortran
- gfortran-4.6 groff-base html2text intltool-debian libblas-dev libblas3gf
- libbz2-dev libcairo2 libcroco3 libdatrie1 libffi5 libfontconfig1
- libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8 libjpeg8-dev
- liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
- libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0
- libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0
- libtiff4 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6
+ bsdmainutils file fontconfig fontconfig-config fonts-dejavu-core gettext
+ gettext-base gfortran gfortran-4.7 groff-base html2text intltool-debian
+ libasprintf-dev libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2
+ libcroco3 libdatrie1 libffi6 libfontconfig1 libfreetype6 libgettextpo-dev
+ libgettextpo0 libgfortran-4.7-dev libgfortran3 libglib2.0-0 libice6 libjbig0
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5
+ libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev
+ libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff5
+ libtinfo-dev libtinfo5 libunistring0 libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
- libxrender1 libxss1 libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5
- ttf-dejavu-core unzip x11-common xdg-utils zip zlib1g-dev
+ libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf r-base-core tcl8.5
+ tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g zlib1g-dev
Suggested packages:
- devscripts dh-make curl defoma gettext-doc gfortran-multilib gfortran-doc
- gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
- ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
- r-mathlib r-base-html texlive-base texlive-latex-base
- texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
- texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
- texi2html tclreadline gvfs-bin
+ wamerican wordlist whois vacation devscripts dh-make gettext-doc
+ gfortran-multilib gfortran-doc gfortran-4.7-multilib gfortran-4.7-doc
+ libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base
+ texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
+ texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
+ texlive-latex-extra texinfo texi2html tcl-tclreadline gvfs-bin
Recommended packages:
- autotools-dev patchutils autopoint libglib2.0-data shared-mime-info xml-core
- libmail-sendmail-perl r-recommended r-doc-html xterm x-terminal-emulator
- libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
- x11-xserver-utils
+ autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
+ xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
+ x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
- cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
- gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
- libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libffi5 libfontconfig1
- libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8 libjpeg8-dev
- liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
- libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0
- libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0
- libtiff4 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6
- libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
- libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5
- tk8.5 ttf-dejavu-core unzip x11-common xdg-utils zip zlib1g-dev
+ bsdmainutils cdbs debhelper file fontconfig fontconfig-config
+ fonts-dejavu-core gettext gettext-base gfortran gfortran-4.7 groff-base
+ html2text intltool-debian libasprintf-dev libasprintf0c2 libblas-dev
+ libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libffi6 libfontconfig1
+ libfreetype6 libgettextpo-dev libgettextpo0 libgfortran-4.7-dev libgfortran3
+ libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3
+ libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3
+ libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff5
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core
+ ucf unzip x11-common xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ libncurses5 libtinfo5 ncurses-bin zlib1g
+4 upgraded, 82 newly installed, 0 to remove and 15 not upgraded.
+Need to get 61.9 MB of archives.
+After this operation, 129 MB of additional disk space will be used.
+Get:1 http://mirror-ubc.debian.org/debian/ unstable/main libtinfo5 kfreebsd-amd64 5.9+20130504-1 [296 kB]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main libcroco3 kfreebsd-amd64 0.6.8-2 [134 kB]
+Get:3 http://mirror-ubc.debian.org/debian/ unstable/main libncurses5 kfreebsd-amd64 5.9+20130504-1 [114 kB]
+Get:4 http://mirror-ubc.debian.org/debian/ unstable/main ncurses-bin kfreebsd-amd64 5.9+20130504-1 [359 kB]
+Get:5 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g kfreebsd-amd64 1:1.2.8.dfsg-1 [90.8 kB]
+Get:6 http://mirror-ubc.debian.org/debian/ unstable/main libpipeline1 kfreebsd-amd64 1.2.3-1 [40.5 kB]
+Get:7 http://mirror-ubc.debian.org/debian/ unstable/main groff-base kfreebsd-amd64 1.22.2-2 [743 kB]
+Get:8 http://mirror-ubc.debian.org/debian/ unstable/main bsdmainutils kfreebsd-amd64 9.0.5 [211 kB]
+Get:9 http://mirror-ubc.debian.org/debian/ unstable/main man-db kfreebsd-amd64 2.6.3-6 [893 kB]
+Get:10 http://mirror-ubc.debian.org/debian/ unstable/main libasprintf0c2 kfreebsd-amd64 0.18.1.1-10 [27.2 kB]
+Get:11 http://mirror-ubc.debian.org/debian/ unstable/main libmagic1 kfreebsd-amd64 1:5.14-1 [216 kB]
+Get:12 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3 kfreebsd-amd64 1:8.31-2 [247 kB]
+Get:13 http://mirror-ubc.debian.org/debian/ unstable/main libxml2 kfreebsd-amd64 2.8.0+dfsg1-7+nmu1 [914 kB]
+Get:14 http://mirror-ubc.debian.org/debian/ unstable/main libfreetype6 kfreebsd-amd64 2.4.9-1.1 [451 kB]
+Get:15 http://mirror-ubc.debian.org/debian/ unstable/main ucf all 3.0025+nmu3 [70.8 kB]
+Get:16 http://mirror-ubc.debian.org/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
+Get:17 http://mirror-ubc.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
+Get:18 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:19 http://mirror-ubc.debian.org/debian/ unstable/main libfontconfig1 kfreebsd-amd64 2.9.0-7.1 [300 kB]
+Get:20 http://mirror-ubc.debian.org/debian/ unstable/main libpixman-1-0 kfreebsd-amd64 0.26.0-4 [427 kB]
+Get:21 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-0 kfreebsd-amd64 1.2.49-4 [190 kB]
+Get:22 http://mirror-ubc.debian.org/debian/ unstable/main libxau6 kfreebsd-amd64 1:1.0.7-1 [18.8 kB]
+Get:23 http://mirror-ubc.debian.org/debian/ unstable/main libxdmcp6 kfreebsd-amd64 1:1.1.1-1 [26.3 kB]
+Get:24 http://mirror-ubc.debian.org/debian/ unstable/main libxcb1 kfreebsd-amd64 1.8.1-2 [50.1 kB]
+Get:25 http://mirror-ubc.debian.org/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:26 http://mirror-ubc.debian.org/debian/ unstable/main libx11-6 kfreebsd-amd64 2:1.5.0-1 [900 kB]
+Get:27 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-render0 kfreebsd-amd64 1.8.1-2 [18.6 kB]
+Get:28 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-shm0 kfreebsd-amd64 1.8.1-2 [10.3 kB]
+Get:29 http://mirror-ubc.debian.org/debian/ unstable/main libxext6 kfreebsd-amd64 2:1.3.1-2 [55.3 kB]
+Get:30 http://mirror-ubc.debian.org/debian/ unstable/main libxrender1 kfreebsd-amd64 1:0.9.7-1 [32.9 kB]
+Get:31 http://mirror-ubc.debian.org/debian/ unstable/main libcairo2 kfreebsd-amd64 1.12.14-4 [1006 kB]
+Get:32 http://mirror-ubc.debian.org/debian/ unstable/main libffi6 kfreebsd-amd64 3.0.13-4 [21.1 kB]
+Get:33 http://mirror-ubc.debian.org/debian/ unstable/main libglib2.0-0 kfreebsd-amd64 2.36.1-2build1 [2048 kB]
+Get:34 http://mirror-ubc.debian.org/debian/ unstable/main libdatrie1 kfreebsd-amd64 0.2.6-2 [30.3 kB]
+Get:35 http://mirror-ubc.debian.org/debian/ unstable/main libunistring0 kfreebsd-amd64 0.9.3-5 [434 kB]
+Get:36 http://mirror-ubc.debian.org/debian/ unstable/main libgettextpo0 kfreebsd-amd64 0.18.1.1-10 [145 kB]
+Get:37 http://mirror-ubc.debian.org/debian/ unstable/main libgfortran3 kfreebsd-amd64 4.8.0-7 [349 kB]
+Get:38 http://mirror-ubc.debian.org/debian/ unstable/main x11-common all 1:7.7+3 [284 kB]
+Get:39 http://mirror-ubc.debian.org/debian/ unstable/main libice6 kfreebsd-amd64 2:1.0.8-2 [63.0 kB]
+Get:40 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg8 kfreebsd-amd64 8d-1 [134 kB]
+Get:41 http://mirror-ubc.debian.org/debian/ unstable/main libthai-data all 0.1.19-2 [156 kB]
+Get:42 http://mirror-ubc.debian.org/debian/ unstable/main libthai0 kfreebsd-amd64 0.1.19-2 [43.3 kB]
+Get:43 http://mirror-ubc.debian.org/debian/ unstable/main libxft2 kfreebsd-amd64 2.3.1-1 [61.4 kB]
+Get:44 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig kfreebsd-amd64 2.9.0-7.1 [349 kB]
+Get:45 http://mirror-ubc.debian.org/debian/ unstable/main libpango1.0-0 kfreebsd-amd64 1.30.0-1 [462 kB]
+Get:46 http://mirror-ubc.debian.org/debian/ unstable/main libpaper1 kfreebsd-amd64 1.1.24+nmu2 [22.1 kB]
+Get:47 http://mirror-ubc.debian.org/debian/ unstable/main libpcrecpp0 kfreebsd-amd64 1:8.31-2 [128 kB]
+Get:48 http://mirror-ubc.debian.org/debian/ unstable/main libsm6 kfreebsd-amd64 2:1.2.1-2 [34.2 kB]
+Get:49 http://mirror-ubc.debian.org/debian/ unstable/main libjbig0 kfreebsd-amd64 2.0-2 [32.0 kB]
+Get:50 http://mirror-ubc.debian.org/debian/ unstable/main libtiff5 kfreebsd-amd64 4.0.2-6 [234 kB]
+Get:51 http://mirror-ubc.debian.org/debian/ unstable/main libxss1 kfreebsd-amd64 1:1.2.2-1 [17.7 kB]
+Get:52 http://mirror-ubc.debian.org/debian/ unstable/main libxt6 kfreebsd-amd64 1:1.1.3-1 [211 kB]
+Get:53 http://mirror-ubc.debian.org/debian/ unstable/main file kfreebsd-amd64 1:5.14-1 [54.1 kB]
+Get:54 http://mirror-ubc.debian.org/debian/ unstable/main gettext-base kfreebsd-amd64 0.18.1.1-10 [153 kB]
+Get:55 http://mirror-ubc.debian.org/debian/ unstable/main cdbs all 0.4.121 [80.5 kB]
+Get:56 http://mirror-ubc.debian.org/debian/ unstable/main html2text kfreebsd-amd64 1.3.2a-15 [104 kB]
+Get:57 http://mirror-ubc.debian.org/debian/ unstable/main libasprintf-dev kfreebsd-amd64 0.18.1.1-10 [27.0 kB]
+Get:58 http://mirror-ubc.debian.org/debian/ unstable/main libgettextpo-dev kfreebsd-amd64 0.18.1.1-10 [184 kB]
+Get:59 http://mirror-ubc.debian.org/debian/ unstable/main gettext kfreebsd-amd64 0.18.1.1-10 [1805 kB]
+Get:60 http://mirror-ubc.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:61 http://mirror-ubc.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:62 http://mirror-ubc.debian.org/debian/ unstable/main debhelper all 9.20130516 [708 kB]
+Get:63 http://mirror-ubc.debian.org/debian/ unstable/main libgfortran-4.7-dev kfreebsd-amd64 4.7.3-4 [439 kB]
+Get:64 http://mirror-ubc.debian.org/debian/ unstable/main gfortran-4.7 kfreebsd-amd64 4.7.3-4 [5611 kB]
+Get:65 http://mirror-ubc.debian.org/debian/ unstable/main gfortran kfreebsd-amd64 4:4.7.2-1 [1130 B]
+Get:66 http://mirror-ubc.debian.org/debian/ unstable/main libblas3 kfreebsd-amd64 1.2.20110419-5 [293 kB]
+Get:67 http://mirror-ubc.debian.org/debian/ unstable/main libblas-dev kfreebsd-amd64 1.2.20110419-5 [313 kB]
+Get:68 http://mirror-ubc.debian.org/debian/ unstable/main libbz2-dev kfreebsd-amd64 1.0.6-4 [32.8 kB]
+Get:69 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg8-dev kfreebsd-amd64 8d-1 [240 kB]
+Get:70 http://mirror-ubc.debian.org/debian/ unstable/main liblapack3 kfreebsd-amd64 3.4.2+dfsg-1 [5087 kB]
+Get:71 http://mirror-ubc.debian.org/debian/ unstable/main liblapack-dev kfreebsd-amd64 3.4.2+dfsg-1 [5602 kB]
+Get:72 http://mirror-ubc.debian.org/debian/ unstable/main libtinfo-dev kfreebsd-amd64 5.9+20130504-1 [108 kB]
+Get:73 http://mirror-ubc.debian.org/debian/ unstable/main libncurses5-dev kfreebsd-amd64 5.9+20130504-1 [222 kB]
+Get:74 http://mirror-ubc.debian.org/debian/ unstable/main libpaper-utils kfreebsd-amd64 1.1.24+nmu2 [18.4 kB]
+Get:75 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3-dev kfreebsd-amd64 1:8.31-2 [356 kB]
+Get:76 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g-dev kfreebsd-amd64 1:1.2.8.dfsg-1 [217 kB]
+Get:77 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-dev kfreebsd-amd64 1.2.49-4 [267 kB]
+Get:78 http://mirror-ubc.debian.org/debian/ unstable/main libreadline6-dev kfreebsd-amd64 6.2+dfsg-0.1 [193 kB]
+Get:79 http://mirror-ubc.debian.org/debian/ unstable/main libreadline-dev kfreebsd-amd64 6.2+dfsg-0.1 [898 B]
+Get:80 http://mirror-ubc.debian.org/debian/ unstable/main zip kfreebsd-amd64 3.0-7 [335 kB]
+Get:81 http://mirror-ubc.debian.org/debian/ unstable/main unzip kfreebsd-amd64 6.0-9 [194 kB]
+Get:82 http://mirror-ubc.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:83 http://mirror-ubc.debian.org/debian/ unstable/main tcl8.5 kfreebsd-amd64 8.5.11-2 [1627 kB]
+Get:84 http://mirror-ubc.debian.org/debian/ unstable/main tk8.5 kfreebsd-amd64 8.5.11-2 [1189 kB]
+Get:85 http://mirror-ubc.debian.org/debian/ unstable/main r-base-core kfreebsd-amd64 3.0.1~20130512-1 [21.5 MB]
+Get:86 http://mirror-ubc.debian.org/debian/ unstable/main r-base-dev all 3.0.1~20130512-1 [3910 B]
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 72 newly installed, 0 to remove and 10 not upgraded.
-Need to get 0 B/58.5 MB of archives.
-After this operation, 122 MB of additional disk space will be used.
+Fetched 61.9 MB in 1min 5s (940 kB/s)
+(Reading database ... 11405 files and directories currently installed.)
+Preparing to replace libtinfo5:kfreebsd-amd64 5.9-10 (using .../libtinfo5_5.9+20130504-1_kfreebsd-amd64.deb) ...
+Unpacking replacement libtinfo5:kfreebsd-amd64 ...
+Setting up libtinfo5:kfreebsd-amd64 (5.9+20130504-1) ...
+(Reading database ... 11405 files and directories currently installed.)
+Preparing to replace libncurses5:kfreebsd-amd64 5.9-10 (using .../libncurses5_5.9+20130504-1_kfreebsd-amd64.deb) ...
+Unpacking replacement libncurses5:kfreebsd-amd64 ...
+Setting up libncurses5:kfreebsd-amd64 (5.9+20130504-1) ...
+(Reading database ... 11405 files and directories currently installed.)
+Preparing to replace ncurses-bin 5.9-10 (using .../ncurses-bin_5.9+20130504-1_kfreebsd-amd64.deb) ...
+Unpacking replacement ncurses-bin ...
+Setting up ncurses-bin (5.9+20130504-1) ...
+(Reading database ... 11403 files and directories currently installed.)
+Preparing to replace zlib1g:kfreebsd-amd64 1:1.2.7.dfsg-13 (using .../zlib1g_1%3a1.2.8.dfsg-1_kfreebsd-amd64.deb) ...
+Unpacking replacement zlib1g:kfreebsd-amd64 ...
+Setting up zlib1g:kfreebsd-amd64 (1:1.2.8.dfsg-1) ...
Selecting previously unselected package libpipeline1:kfreebsd-amd64.
-(Reading database ... 11566 files and directories currently installed.)
-Unpacking libpipeline1:kfreebsd-amd64 (from .../libpipeline1_1.2.1-1_kfreebsd-amd64.deb) ...
+(Reading database ... 11403 files and directories currently installed.)
+Unpacking libpipeline1:kfreebsd-amd64 (from .../libpipeline1_1.2.3-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.22.2-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_kfreebsd-amd64.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.3-6_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libasprintf0c2:kfreebsd-amd64.
+Unpacking libasprintf0c2:kfreebsd-amd64 (from .../libasprintf0c2_0.18.1.1-10_kfreebsd-amd64.deb) ...
Selecting previously unselected package libmagic1:kfreebsd-amd64.
-Unpacking libmagic1:kfreebsd-amd64 (from .../libmagic1_5.11-1_kfreebsd-amd64.deb) ...
+Unpacking libmagic1:kfreebsd-amd64 (from .../libmagic1_1%3a5.14-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libpcre3:kfreebsd-amd64.
+Unpacking libpcre3:kfreebsd-amd64 (from .../libpcre3_1%3a8.31-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libxml2:kfreebsd-amd64.
+Unpacking libxml2:kfreebsd-amd64 (from .../libxml2_2.8.0+dfsg1-7+nmu1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libfreetype6:kfreebsd-amd64.
-Unpacking libfreetype6:kfreebsd-amd64 (from .../libfreetype6_2.4.9-1_kfreebsd-amd64.deb) ...
+Unpacking libfreetype6:kfreebsd-amd64 (from .../libfreetype6_2.4.9-1.1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ...
+Moving old data out of the way
+Selecting previously unselected package fonts-dejavu-core.
+Unpacking fonts-dejavu-core (from .../fonts-dejavu-core_2.33+svn2514-3_all.deb) ...
Selecting previously unselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33+svn2514-3_all.deb) ...
Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ...
Selecting previously unselected package libfontconfig1:kfreebsd-amd64.
-Unpacking libfontconfig1:kfreebsd-amd64 (from .../libfontconfig1_2.8.0-3.1_kfreebsd-amd64.deb) ...
+Unpacking libfontconfig1:kfreebsd-amd64 (from .../libfontconfig1_2.9.0-7.1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libpixman-1-0:kfreebsd-amd64.
-Unpacking libpixman-1-0:kfreebsd-amd64 (from .../libpixman-1-0_0.24.4-1_kfreebsd-amd64.deb) ...
+Unpacking libpixman-1-0:kfreebsd-amd64 (from .../libpixman-1-0_0.26.0-4_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libpng12-0:kfreebsd-amd64.
+Unpacking libpng12-0:kfreebsd-amd64 (from .../libpng12-0_1.2.49-4_kfreebsd-amd64.deb) ...
Selecting previously unselected package libxau6:kfreebsd-amd64.
Unpacking libxau6:kfreebsd-amd64 (from .../libxau6_1%3a1.0.7-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libxdmcp6:kfreebsd-amd64.
-Unpacking libxdmcp6:kfreebsd-amd64 (from .../libxdmcp6_1%3a1.1.0-4_kfreebsd-amd64.deb) ...
+Unpacking libxdmcp6:kfreebsd-amd64 (from .../libxdmcp6_1%3a1.1.1-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libxcb1:kfreebsd-amd64.
-Unpacking libxcb1:kfreebsd-amd64 (from .../libxcb1_1.8.1-1_kfreebsd-amd64.deb) ...
+Unpacking libxcb1:kfreebsd-amd64 (from .../libxcb1_1.8.1-2_kfreebsd-amd64.deb) ...
Selecting previously unselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
+Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ...
Selecting previously unselected package libx11-6:kfreebsd-amd64.
-Unpacking libx11-6:kfreebsd-amd64 (from .../libx11-6_2%3a1.4.4-4_kfreebsd-amd64.deb) ...
+Unpacking libx11-6:kfreebsd-amd64 (from .../libx11-6_2%3a1.5.0-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libxcb-render0:kfreebsd-amd64.
-Unpacking libxcb-render0:kfreebsd-amd64 (from .../libxcb-render0_1.8.1-1_kfreebsd-amd64.deb) ...
+Unpacking libxcb-render0:kfreebsd-amd64 (from .../libxcb-render0_1.8.1-2_kfreebsd-amd64.deb) ...
Selecting previously unselected package libxcb-shm0:kfreebsd-amd64.
-Unpacking libxcb-shm0:kfreebsd-amd64 (from .../libxcb-shm0_1.8.1-1_kfreebsd-amd64.deb) ...
+Unpacking libxcb-shm0:kfreebsd-amd64 (from .../libxcb-shm0_1.8.1-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libxext6:kfreebsd-amd64.
+Unpacking libxext6:kfreebsd-amd64 (from .../libxext6_2%3a1.3.1-2_kfreebsd-amd64.deb) ...
Selecting previously unselected package libxrender1:kfreebsd-amd64.
-Unpacking libxrender1:kfreebsd-amd64 (from .../libxrender1_1%3a0.9.6-2_kfreebsd-amd64.deb) ...
+Unpacking libxrender1:kfreebsd-amd64 (from .../libxrender1_1%3a0.9.7-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libcairo2:kfreebsd-amd64.
-Unpacking libcairo2:kfreebsd-amd64 (from .../libcairo2_1.12.0-2_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libffi5:kfreebsd-amd64.
-Unpacking libffi5:kfreebsd-amd64 (from .../libffi5_3.0.10-3_kfreebsd-amd64.deb) ...
+Unpacking libcairo2:kfreebsd-amd64 (from .../libcairo2_1.12.14-4_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libffi6:kfreebsd-amd64.
+Unpacking libffi6:kfreebsd-amd64 (from .../libffi6_3.0.13-4_kfreebsd-amd64.deb) ...
Selecting previously unselected package libglib2.0-0:kfreebsd-amd64.
-Unpacking libglib2.0-0:kfreebsd-amd64 (from .../libglib2.0-0_2.32.0-4_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-7_kfreebsd-amd64.deb) ...
+Unpacking libglib2.0-0:kfreebsd-amd64 (from .../libglib2.0-0_2.36.1-2build1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libcroco3:kfreebsd-amd64.
-Unpacking libcroco3:kfreebsd-amd64 (from .../libcroco3_0.6.5-1_kfreebsd-amd64.deb) ...
+Unpacking libcroco3:kfreebsd-amd64 (from .../libcroco3_0.6.8-2_kfreebsd-amd64.deb) ...
Selecting previously unselected package libdatrie1:kfreebsd-amd64.
-Unpacking libdatrie1:kfreebsd-amd64 (from .../libdatrie1_0.2.5-3_kfreebsd-amd64.deb) ...
+Unpacking libdatrie1:kfreebsd-amd64 (from .../libdatrie1_0.2.6-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libunistring0:kfreebsd-amd64.
+Unpacking libunistring0:kfreebsd-amd64 (from .../libunistring0_0.9.3-5_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libgettextpo0:kfreebsd-amd64.
+Unpacking libgettextpo0:kfreebsd-amd64 (from .../libgettextpo0_0.18.1.1-10_kfreebsd-amd64.deb) ...
Selecting previously unselected package libgfortran3:kfreebsd-amd64.
-Unpacking libgfortran3:kfreebsd-amd64 (from .../libgfortran3_4.7.0-3_kfreebsd-amd64.deb) ...
+Unpacking libgfortran3:kfreebsd-amd64 (from .../libgfortran3_4.8.0-7_kfreebsd-amd64.deb) ...
Selecting previously unselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
+Unpacking x11-common (from .../x11-common_1%3a7.7+3_all.deb) ...
Selecting previously unselected package libice6:kfreebsd-amd64.
Unpacking libice6:kfreebsd-amd64 (from .../libice6_2%3a1.0.8-2_kfreebsd-amd64.deb) ...
Selecting previously unselected package libjpeg8:kfreebsd-amd64.
Unpacking libjpeg8:kfreebsd-amd64 (from .../libjpeg8_8d-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.17-1_all.deb) ...
+Unpacking libthai-data (from .../libthai-data_0.1.19-2_all.deb) ...
Selecting previously unselected package libthai0:kfreebsd-amd64.
-Unpacking libthai0:kfreebsd-amd64 (from .../libthai0_0.1.17-1_kfreebsd-amd64.deb) ...
+Unpacking libthai0:kfreebsd-amd64 (from .../libthai0_0.1.19-2_kfreebsd-amd64.deb) ...
Selecting previously unselected package libxft2:kfreebsd-amd64.
-Unpacking libxft2:kfreebsd-amd64 (from .../libxft2_2.2.0-3_kfreebsd-amd64.deb) ...
+Unpacking libxft2:kfreebsd-amd64 (from .../libxft2_2.3.1-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-3.1_kfreebsd-amd64.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libpango1.0-0:kfreebsd-amd64.
Unpacking libpango1.0-0:kfreebsd-amd64 (from .../libpango1.0-0_1.30.0-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libpaper1:kfreebsd-amd64.
+Unpacking libpaper1:kfreebsd-amd64 (from .../libpaper1_1.1.24+nmu2_kfreebsd-amd64.deb) ...
Selecting previously unselected package libpcrecpp0:kfreebsd-amd64.
-Unpacking libpcrecpp0:kfreebsd-amd64 (from .../libpcrecpp0_1%3a8.30-4_kfreebsd-amd64.deb) ...
+Unpacking libpcrecpp0:kfreebsd-amd64 (from .../libpcrecpp0_1%3a8.31-2_kfreebsd-amd64.deb) ...
Selecting previously unselected package libsm6:kfreebsd-amd64.
Unpacking libsm6:kfreebsd-amd64 (from .../libsm6_2%3a1.2.1-2_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libtiff4:kfreebsd-amd64.
-Unpacking libtiff4:kfreebsd-amd64 (from .../libtiff4_3.9.6-2_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libunistring0:kfreebsd-amd64.
-Unpacking libunistring0:kfreebsd-amd64 (from .../libunistring0_0.9.3-5_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libxext6:kfreebsd-amd64.
-Unpacking libxext6:kfreebsd-amd64 (from .../libxext6_2%3a1.3.0-3_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libjbig0:kfreebsd-amd64.
+Unpacking libjbig0:kfreebsd-amd64 (from .../libjbig0_2.0-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libtiff5:kfreebsd-amd64.
+Unpacking libtiff5:kfreebsd-amd64 (from .../libtiff5_4.0.2-6_kfreebsd-amd64.deb) ...
Selecting previously unselected package libxss1:kfreebsd-amd64.
-Unpacking libxss1:kfreebsd-amd64 (from .../libxss1_1%3a1.2.1-2_kfreebsd-amd64.deb) ...
+Unpacking libxss1:kfreebsd-amd64 (from .../libxss1_1%3a1.2.2-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libxt6:kfreebsd-amd64.
-Unpacking libxt6:kfreebsd-amd64 (from .../libxt6_1%3a1.1.1-2_kfreebsd-amd64.deb) ...
-Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-7_kfreebsd-amd64.deb) ...
-Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.1-2_kfreebsd-amd64.deb) ...
+Unpacking libxt6:kfreebsd-amd64 (from .../libxt6_1%3a1.1.3-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package file.
-Unpacking file (from .../file_5.11-1_kfreebsd-amd64.deb) ...
+Unpacking file (from .../file_1%3a5.14-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_kfreebsd-amd64.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_kfreebsd-amd64.deb) ...
Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.109_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libasprintf-dev:kfreebsd-amd64.
+Unpacking libasprintf-dev:kfreebsd-amd64 (from .../libasprintf-dev_0.18.1.1-10_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libgettextpo-dev:kfreebsd-amd64.
+Unpacking libgettextpo-dev:kfreebsd-amd64 (from .../libgettextpo-dev_0.18.1.1-10_kfreebsd-amd64.deb) ...
Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-5_kfreebsd-amd64.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-10_kfreebsd-amd64.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120410_all.deb) ...
-Selecting previously unselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.35_all.deb) ...
-Selecting previously unselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-1_kfreebsd-amd64.deb) ...
+Unpacking debhelper (from .../debhelper_9.20130516_all.deb) ...
+Selecting previously unselected package libgfortran-4.7-dev:kfreebsd-amd64.
+Unpacking libgfortran-4.7-dev:kfreebsd-amd64 (from .../libgfortran-4.7-dev_4.7.3-4_kfreebsd-amd64.deb) ...
+Selecting previously unselected package gfortran-4.7.
+Unpacking gfortran-4.7 (from .../gfortran-4.7_4.7.3-4_kfreebsd-amd64.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.3-4_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_kfreebsd-amd64.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.7.2-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libblas3.
+Unpacking libblas3 (from .../libblas3_1.2.20110419-5_kfreebsd-amd64.deb) ...
Selecting previously unselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_kfreebsd-amd64.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_kfreebsd-amd64.deb) ...
Selecting previously unselected package libbz2-dev:kfreebsd-amd64.
-Unpacking libbz2-dev:kfreebsd-amd64 (from .../libbz2-dev_1.0.6-1_kfreebsd-amd64.deb) ...
+Unpacking libbz2-dev:kfreebsd-amd64 (from .../libbz2-dev_1.0.6-4_kfreebsd-amd64.deb) ...
Selecting previously unselected package libjpeg8-dev:kfreebsd-amd64.
Unpacking libjpeg8-dev:kfreebsd-amd64 (from .../libjpeg8-dev_8d-1_kfreebsd-amd64.deb) ...
-Selecting previously unselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package liblapack3.
+Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_kfreebsd-amd64.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.4.2+dfsg-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libtinfo-dev:kfreebsd-amd64.
-Unpacking libtinfo-dev:kfreebsd-amd64 (from .../libtinfo-dev_5.9-6_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-6_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libpaper1.
-Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_kfreebsd-amd64.deb) ...
+Unpacking libtinfo-dev:kfreebsd-amd64 (from .../libtinfo-dev_5.9+20130504-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libncurses5-dev:kfreebsd-amd64.
+Unpacking libncurses5-dev:kfreebsd-amd64 (from .../libncurses5-dev_5.9+20130504-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libpaper-utils.
-Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_1%3a8.30-4_kfreebsd-amd64.deb) ...
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libpcre3-dev:kfreebsd-amd64.
+Unpacking libpcre3-dev:kfreebsd-amd64 (from .../libpcre3-dev_1%3a8.31-2_kfreebsd-amd64.deb) ...
Selecting previously unselected package zlib1g-dev:kfreebsd-amd64.
-Unpacking zlib1g-dev:kfreebsd-amd64 (from .../zlib1g-dev_1%3a1.2.6.dfsg-2_kfreebsd-amd64.deb) ...
+Unpacking zlib1g-dev:kfreebsd-amd64 (from .../zlib1g-dev_1%3a1.2.8.dfsg-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-1_kfreebsd-amd64.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_kfreebsd-amd64.deb) ...
Selecting previously unselected package libreadline6-dev:kfreebsd-amd64.
-Unpacking libreadline6-dev:kfreebsd-amd64 (from .../libreadline6-dev_6.2-8_kfreebsd-amd64.deb) ...
+Unpacking libreadline6-dev:kfreebsd-amd64 (from .../libreadline6-dev_6.2+dfsg-0.1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libreadline-dev:kfreebsd-amd64.
-Unpacking libreadline-dev:kfreebsd-amd64 (from .../libreadline-dev_6.2-8_kfreebsd-amd64.deb) ...
+Unpacking libreadline-dev:kfreebsd-amd64 (from .../libreadline-dev_6.2+dfsg-0.1_kfreebsd-amd64.deb) ...
Selecting previously unselected package zip.
-Unpacking zip (from .../zip_3.0-4_kfreebsd-amd64.deb) ...
+Unpacking zip (from .../zip_3.0-7_kfreebsd-amd64.deb) ...
Selecting previously unselected package unzip.
-Unpacking unzip (from .../unzip_6.0-6_kfreebsd-amd64.deb) ...
+Unpacking unzip (from .../unzip_6.0-9_kfreebsd-amd64.deb) ...
Selecting previously unselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-6_all.deb) ...
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
Selecting previously unselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_kfreebsd-amd64.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_kfreebsd-amd64.deb) ...
Selecting previously unselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.11-1_kfreebsd-amd64.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_kfreebsd-amd64.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.15.0-1_kfreebsd-amd64.deb) ...
+Unpacking r-base-core (from .../r-base-core_3.0.1~20130512-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.15.0-1_all.deb) ...
-Setting up libpipeline1:kfreebsd-amd64 (1.2.1-1) ...
-Setting up libmagic1:kfreebsd-amd64 (5.11-1) ...
-Setting up libfreetype6:kfreebsd-amd64 (2.4.9-1) ...
-Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3.1) ...
-Setting up libfontconfig1:kfreebsd-amd64 (2.8.0-3.1) ...
-Setting up libpixman-1-0:kfreebsd-amd64 (0.24.4-1) ...
+Unpacking r-base-dev (from .../r-base-dev_3.0.1~20130512-1_all.deb) ...
+Setting up libpipeline1:kfreebsd-amd64 (1.2.3-1) ...
+Setting up groff-base (1.22.2-2) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.3-6) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:kfreebsd-amd64 (0.18.1.1-10) ...
+Setting up libmagic1:kfreebsd-amd64 (1:5.14-1) ...
+Setting up libpcre3:kfreebsd-amd64 (1:8.31-2) ...
+Setting up libxml2:kfreebsd-amd64 (2.8.0+dfsg1-7+nmu1) ...
+Setting up libfreetype6:kfreebsd-amd64 (2.4.9-1.1) ...
+Setting up ucf (3.0025+nmu3) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:kfreebsd-amd64 (2.9.0-7.1) ...
+Setting up libpixman-1-0:kfreebsd-amd64 (0.26.0-4) ...
+Setting up libpng12-0:kfreebsd-amd64 (1.2.49-4) ...
Setting up libxau6:kfreebsd-amd64 (1:1.0.7-1) ...
-Setting up libxdmcp6:kfreebsd-amd64 (1:1.1.0-4) ...
-Setting up libxcb1:kfreebsd-amd64 (1.8.1-1) ...
-Setting up libx11-data (2:1.4.4-4) ...
-Setting up libx11-6:kfreebsd-amd64 (2:1.4.4-4) ...
-Setting up libxcb-render0:kfreebsd-amd64 (1.8.1-1) ...
-Setting up libxcb-shm0:kfreebsd-amd64 (1.8.1-1) ...
-Setting up libxrender1:kfreebsd-amd64 (1:0.9.6-2) ...
-Setting up libcairo2:kfreebsd-amd64 (1.12.0-2) ...
-Setting up libffi5:kfreebsd-amd64 (3.0.10-3) ...
-Setting up libglib2.0-0:kfreebsd-amd64 (2.32.0-4) ...
+Setting up libxdmcp6:kfreebsd-amd64 (1:1.1.1-1) ...
+Setting up libxcb1:kfreebsd-amd64 (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:kfreebsd-amd64 (2:1.5.0-1) ...
+Setting up libxcb-render0:kfreebsd-amd64 (1.8.1-2) ...
+Setting up libxcb-shm0:kfreebsd-amd64 (1.8.1-2) ...
+Setting up libxext6:kfreebsd-amd64 (2:1.3.1-2) ...
+Setting up libxrender1:kfreebsd-amd64 (1:0.9.7-1) ...
+Setting up libcairo2:kfreebsd-amd64 (1.12.14-4) ...
+Setting up libffi6:kfreebsd-amd64 (3.0.13-4) ...
+Setting up libglib2.0-0:kfreebsd-amd64 (2.36.1-2build1) ...
No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-7) ...
-Setting up libcroco3:kfreebsd-amd64 (0.6.5-1) ...
-Setting up libdatrie1:kfreebsd-amd64 (0.2.5-3) ...
-Setting up libgfortran3:kfreebsd-amd64 (4.7.0-3) ...
-Setting up x11-common (1:7.6+12) ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libcroco3:kfreebsd-amd64 (0.6.8-2) ...
+Setting up libdatrie1:kfreebsd-amd64 (0.2.6-2) ...
+Setting up libunistring0:kfreebsd-amd64 (0.9.3-5) ...
+Setting up libgettextpo0:kfreebsd-amd64 (0.18.1.1-10) ...
+Setting up libgfortran3:kfreebsd-amd64 (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
+Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix.
Setting up libice6:kfreebsd-amd64 (2:1.0.8-2) ...
Setting up libjpeg8:kfreebsd-amd64 (8d-1) ...
-Setting up libthai-data (0.1.17-1) ...
-Setting up libthai0:kfreebsd-amd64 (0.1.17-1) ...
-Setting up libxft2:kfreebsd-amd64 (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3.1) ...
-Cleaning up old fontconfig caches... done.
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:kfreebsd-amd64 (0.1.19-2) ...
+Setting up libxft2:kfreebsd-amd64 (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
Regenerating fonts cache... done.
Setting up libpango1.0-0:kfreebsd-amd64 (1.30.0-1) ...
-Setting up libpcrecpp0:kfreebsd-amd64 (1:8.30-4) ...
+Setting up libpaper1:kfreebsd-amd64 (1.1.24+nmu2) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpcrecpp0:kfreebsd-amd64 (1:8.31-2) ...
Setting up libsm6:kfreebsd-amd64 (2:1.2.1-2) ...
-Setting up libtiff4:kfreebsd-amd64 (3.9.6-2) ...
-Setting up libunistring0:kfreebsd-amd64 (0.9.3-5) ...
-Setting up libxext6:kfreebsd-amd64 (2:1.3.0-3) ...
-Setting up libxss1:kfreebsd-amd64 (1:1.2.1-2) ...
-Setting up libxt6:kfreebsd-amd64 (1:1.1.1-2) ...
-Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
-Building database of manual pages ...
-Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.109) ...
+Setting up libjbig0:kfreebsd-amd64 (2.0-2) ...
+Setting up libtiff5:kfreebsd-amd64 (4.0.2-6) ...
+Setting up libxss1:kfreebsd-amd64 (1:1.2.2-1) ...
+Setting up libxt6:kfreebsd-amd64 (1:1.1.3-1) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-5) ...
+Setting up libasprintf-dev:kfreebsd-amd64 (0.18.1.1-10) ...
+Setting up libgettextpo-dev:kfreebsd-amd64 (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120410) ...
-Setting up dpatch (2.0.35) ...
-Setting up gfortran-4.6 (4.6.3-1) ...
-Setting up gfortran (4:4.6.3-4) ...
-update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev:kfreebsd-amd64 (1.0.6-1) ...
+Setting up debhelper (9.20130516) ...
+Setting up libgfortran-4.7-dev:kfreebsd-amd64 (4.7.3-4) ...
+Setting up gfortran-4.7 (4.7.3-4) ...
+Setting up gfortran (4:4.7.2-1) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:kfreebsd-amd64 (1.0.6-4) ...
Setting up libjpeg8-dev:kfreebsd-amd64 (8d-1) ...
-Setting up liblapack3gf (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev:kfreebsd-amd64 (5.9-6) ...
-Setting up libncurses5-dev (5.9-6) ...
-Setting up libpaper1 (1.1.24+nmu1) ...
-
-Creating config file /etc/papersize with new version
-Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcre3-dev (1:8.30-4) ...
-Setting up zlib1g-dev:kfreebsd-amd64 (1:1.2.6.dfsg-2) ...
-Setting up libpng12-dev (1.2.49-1) ...
-Setting up libreadline6-dev:kfreebsd-amd64 (6.2-8) ...
-Setting up libreadline-dev:kfreebsd-amd64 (6.2-8) ...
-Setting up zip (3.0-4) ...
-Setting up unzip (6.0-6) ...
-Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
-Setting up tcl8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.15.0-1) ...
-Setting R_PAPERSIZE_USER default to 'a4'
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:kfreebsd-amd64 (5.9+20130504-1) ...
+Setting up libncurses5-dev:kfreebsd-amd64 (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:kfreebsd-amd64 (1:8.31-2) ...
+Setting up zlib1g-dev:kfreebsd-amd64 (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:kfreebsd-amd64 (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:kfreebsd-amd64 (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.1~20130512-1) ...
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.15.0-1) ...
+Setting up r-base-dev (3.0.1~20130512-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
Checking correctness of dependencies...
Kernel: GNU/kFreeBSD 8.1-1-amd64 kfreebsd-amd64 (x86_64)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 kfreebsd-kernel-headers_0.78 libc0.1-dev_2.13-27 libstdc++6_4.7.0-3 libstdc++6-4.6-dev_4.6.3-1
-Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.109 coreutils_8.13-3.1 cpp_4:4.6.3-4 cpp-4.6_4.6.3-1 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120410 debian-archive-keyring_2010.08.28 debianutils_4.2.2 diffutils_1:3.2-2 dpatch_2.0.35 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-1 e2fsprogs_1.42.2-1 fakeroot_1.18.2-1 file_5.11-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 freebsd-utils_9.0+ds1-1 g++_4:4.6.3-4 g++-4.6_4.6.3-1 gcc_4:4.6.3-4 gcc-4.4-base_4.4.7-1 gcc-4.6_4.6.3-1 gcc-4.6-base_4.6.3-1 gcc-4.7-base_4.7.0-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.3-4 gfortran-4.6_4.6.3-1 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.10-1 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 kbdcontrol_9.0+ds1-1 kfreebsd-kernel-headers_0.78 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-4 libbsd0_0.3.0-2 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-27 libc-dev-bin_2.13-27 libc0.1_2.13-27 libc0.1-dev_2.13-27 libcairo2_1.12.0-2 libcam6_9.0+ds1-2 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libexpat1_2.1.0-1 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-1+b1 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-3 libgdbm3_1.8.3-10 libgeom1_9.0+ds1-2 libgfortran3_4.7.0-3 libglib2.0-0_2.32.0-4 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-3 libgssglue1_0.3-4 libice6_2:1.0.8-2 libjail1_9.0+ds1-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 libkiconv4_9.0+ds1-2 libkvm0_9.0+ds1-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-6 libncurses5-dev_5.9-6 libncursesw5_5.9-6 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_1:8.30-4 libpcre3-dev_1:8.30-4 libpcrecpp0_1:8.30-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.49-1 libpng12-dev_1.2.49-1 libprocps0_1:3.3.2-3 libquadmath0_4.7.0-3 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libsbuf6_9.0+ds1-2 libslang2_2.2.4-8 libsm6_2:1.2.1-2 libss2_1.42.1-2 libstdc++6_4.7.0-3 libstdc++6-4.6-dev_4.6.3-1 libswitch-perl_2.16-2 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-6 libtinfo5_5.9-6 libtirpc1_0.2.2-5 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 login_1:4.1.5-1 lsb-base_3.2+Debian31 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-17 multiarch-support_2.13-27 ncurses-base_5.9-4 ncurses-bin_5.9-6 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 procps_1:3.3.2-3 r-base-core_2.15.0-1 r-base-dev_2.15.0-1 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 type-handling_0.2.23 tzdata_2012b-1 ucf_3.0025+nmu2 unzip_6.0-6 util-linux_2.20.1-4 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.7_4.7.3-4 gcc-4.7_4.7.3-4 kfreebsd-kernel-headers_0.83 libc0.1-dev_2.17-3 libstdc++6_4.8.0-7 libstdc++6-4.7-dev_4.7.3-4
+Package versions: apt_0.9.7.8 base-files_7.1 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.13-3.3 cpp_4:4.7.2-1 cpp-4.7_4.7.3-4 dash_0.5.7-3 debconf_1.5.49 debconf-i18n_1.5.49 debhelper_9.20130516 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-1 findutils_4.4.2-5 fontconfig_2.9.0-7.1 fontconfig-config_2.9.0-7.1 fonts-dejavu-core_2.33+svn2514-3 freebsd-utils_9.0+ds1-11 g++_4:4.7.2-1 g++-4.7_4.7.3-4 gcc_4:4.7.2-1 gcc-4.7_4.7.3-4 gcc-4.7-base_4.7.3-4 gcc-4.8-base_4.8.0-7 gettext_0.18.1.1-10 gettext-base_0.18.1.1-10 gfortran_4:4.7.2-1 gfortran-4.7_4.7.3-4 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.14-1 groff-base_1.22.2-2 gzip_1.5-1.1 hostname_3.12 html2text_1.3.2a-15 initscripts_2.88dsf-41 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 kbdcontrol_9.0+ds1-11 kfreebsd-kernel-headers_0.83 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7.8 libasprintf-dev_0.18.1.1-10 libasprintf0c2_0.18.1.1-10 libattr1_1:2.4.46-8 libblas-dev_1.2.20110419-5 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.3 libbsd0_0.4.2-1 libbz2-1.0_1.0.6-4 libbz2-dev_1.0.6-4 libc-bin_2.13-38 libc-dev-bin_2.17-3 libc0.1_2.17-3 libc0.1-dev_2.17-3 libcairo2_1.12.14-4 libcam6_9.0+ds1-4 libclass-isa-perl_0.36-5 libcomerr2_1.42.5-1.1 libcroco3_0.6.8-2 libdatrie1_0.2.6-2 libdb5.1_5.1.29-5 libdpkg-perl_1.16.10 libexpat1_2.1.0-1 libffi6_3.0.13-4 libfontconfig1_2.9.0-7.1 libfreetype6_2.4.9-1.1 libgcc-4.7-dev_4.7.3-4 libgcc1_1:4.8.0-7 libgdbm3_1.8.3-11 libgeom1_9.0+ds1-4 libgettextpo-dev_0.18.1.1-10 libgettextpo0_0.18.1.1-10 libgfortran-4.7-dev_4.7.3-4 libgfortran3_4.8.0-7 libglib2.0-0_2.36.1-2build1 libgmp10_2:5.1.1+dfsg-3 libgomp1_4.8.0-7 libgssglue1_0.4-2 libice6_2:1.0.8-2 libjail1_9.0+ds1-4 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 libkiconv4_9.0+ds1-4 libkvm0_9.0+ds1-4 liblapack-dev_3.4.2+dfsg-1 liblapack3_3.4.2+dfsg-1 liblocale-gettext-perl_1.05-7+b1 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-1 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libncurses5_5.9+20130504-1 libncurses5-dev_5.9+20130504-1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.31-2 libpcre3-dev_1:8.31-2 libpcrecpp0_1:8.31-2 libpipeline1_1.2.3-1 libpixman-1-0_0.26.0-4 libpng12-0_1.2.49-4 libpng12-dev_1.2.49-4 libquadmath0_4.8.0-7 libreadline-dev_6.2+dfsg-0.1 libreadline6_6.2+dfsg-0.1 libreadline6-dev_6.2+dfsg-0.1 libsbuf6_9.0+ds1-4 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libss2_1.42.5-1.1 libstdc++6_4.8.0-7 libstdc++6-4.7-dev_4.7.3-4 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.19-2 libthai0_0.1.19-2 libtiff5_4.0.2-6 libtimedate-perl_1.2000-1 libtinfo-dev_5.9+20130504-1 libtinfo5_5.9+20130504-1 libtirpc1_0.2.2-5 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23+nmu1 libuuid1_2.20.1-5.3 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-2 libxcb-shm0_1.8.1-2 libxcb1_1.8.1-2 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-7+nmu1 libxrender1_1:0.9.7-1 libxss1_1:1.2.2-1 libxt6_1:1.1.3-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian9 make_3.81-8.2 man-db_2.6.3-6 mawk_1.3.3-17 multiarch-support_2.13-38 ncurses-base_5.9-10 ncurses-bin_5.9+20130504-1 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-21 perl-base_5.14.2-21 perl-modules_5.14.2-21 po-debconf_1.0.16+nmu2 r-base-core_3.0.1~20130512-1 r-base-dev_3.0.1~20130512-1 readline-common_6.2+dfsg-0.1 sed_4.2.1-10 sensible-utils_0.0.7 sysv-rc_2.88dsf-41 sysvinit_2.88dsf-41 sysvinit-utils_2.88dsf-41 tar_1.26+dfsg-5 tcl8.5_8.5.11-2 tk8.5_8.5.11-2 ttf-dejavu-core_2.33+svn2514-3 tzdata_2013b-2 ucf_3.0025+nmu3 unzip_6.0-9 util-linux_2.20.1-5.3 x11-common_1:7.7+3 xdg-utils_1.1.0~rc1+git20111210-7 xz-utils_5.1.1alpha+20120614-2 zip_3.0-7 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -466,12 +752,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Apr 12 02:45:32 2012 UTC using RSA key ID 2295D502
+gpgv: Signature made Thu May 16 14:46:42 2013 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.12.0~dfsg-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.12.0~dfsg
-dpkg-source: info: unpacking r-bioc-limma_3.12.0~dfsg.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.12.0~dfsg-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.16.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.16.3~dfsg
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg-1.debian.tar.gz
Check disc space
────────────────
@@ -481,27 +767,12 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.12.0~dfsg-1
- dpkg-source --before-build r-bioc-limma-3.12.0~dfsg
+dpkg-buildpackage: source version 3.16.3~dfsg-1
+ dpkg-source --before-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: host architecture kfreebsd-amd64
fakeroot debian/rules clean
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
-/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-amd64-kl0wMV/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-amd64-kl0wMV/r-bioc-limma-3.12.0~dfsg'
-if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "reverse-patches" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-for dir in debian/patches ; do \
- rm -f $dir/*.log ; \
- done
dh_clean
rm -f debian/r-bioc-limma.substvars
rm -f debian/r-bioc-limma.*.debhelper
@@ -522,26 +793,9 @@ if test -d src; then \
fi
rm -f config.log config.status
debian/rules build-arch
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
-/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-amd64-kl0wMV/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-amd64-kl0wMV/r-bioc-limma-3.12.0~dfsg'
-if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-amd64-kl0wMV/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-amd64-kl0wMV/r-bioc-limma-3.12.0~dfsg'
fakeroot debian/rules binary-arch
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
@@ -553,26 +807,26 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
install -d debian/r-bioc-limma/usr/lib/R/site-library
-echo "R:Depends=r-base-core (>= 2.15.0-1)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 3.0.1~20130512-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-amd64-kl0wMV/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-amd64-Cz6ptv/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-amd64-kl0wMV/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-amd64-Cz6ptv/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-amd64-kl0wMV/r-bioc-limma-3.12.0~dfsg/src'
-gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c normexp.c -o normexp.o
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-amd64-Cz6ptv/r-bioc-limma-3.16.3~dfsg/src'
+gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O2 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-amd64-kl0wMV/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-amd64-kl0wMV/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-amd64-kl0wMV/r-bioc-limma-3.12.0~dfsg/src'
-installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-amd64-kl0wMV/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-amd64-Cz6ptv/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-amd64-Cz6ptv/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-amd64-Cz6ptv/r-bioc-limma-3.16.3~dfsg/src'
+installing to /build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-amd64-Cz6ptv/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -580,22 +834,27 @@ installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-amd64-kl0wMV/r-b
*** installing help indices
** building package indices
** installing vignettes
- 'limma.Rnw'
** testing if installed package can be loaded
-
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-amd64-kl0wMV/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-amd64-kl0wMV/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-amd64-kl0wMV/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-amd64-Cz6ptv/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-amd64-Cz6ptv/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-amd64-Cz6ptv/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-amd64-kl0wMV/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-amd64-Cz6ptv/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-amd64-kl0wMV/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-amd64-Cz6ptv/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/CITATION
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/doc/*
dh_installdocs -pr-bioc-limma
install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-amd64-Cz6ptv/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/doc/r-bioc-limma \;
+ cp -a debian/README.test debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ chown -R 0:0 debian/r-bioc-limma/usr/share/doc
+ chmod -R go=rX debian/r-bioc-limma/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-limma/usr/share/doc
install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
@@ -627,9 +886,9 @@ dh_strip -pr-bioc-limma
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
cd debian/r-bioc-limma
- chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
- gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
- cd '/build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-amd64-kl0wMV/r-bioc-limma-3.12.0~dfsg'
+ chmod a-x usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ gzip -9nf usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ cd '/build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-amd64-Cz6ptv/r-bioc-limma-3.16.3~dfsg'
dh_fixperms -pr-bioc-limma
find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -651,6 +910,7 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
echo misc:Depends= >> debian/r-bioc-limma.substvars
dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-limma.substvars -Pdebian/r-bioc-limma
+dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
chmod 644 debian/r-bioc-limma/DEBIAN/control
chown 0:0 debian/r-bioc-limma/DEBIAN/control
dh_md5sums -pr-bioc-limma
@@ -659,62 +919,79 @@ dh_md5sums -pr-bioc-limma
chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
dpkg-deb --build debian/r-bioc-limma ..
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.12.0~dfsg-1_kfreebsd-amd64.deb'.
- dpkg-genchanges -B -mkfreebsd-amd64 Build Daemon (fasch) <buildd_kfreebsd-amd64-fasch at buildd.debian.org> >../r-bioc-limma_3.12.0~dfsg-1_kfreebsd-amd64.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.16.3~dfsg-1_kfreebsd-amd64.deb'.
+ dpkg-genchanges -B -mkfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org> >../r-bioc-limma_3.16.3~dfsg-1_kfreebsd-amd64.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.12.0~dfsg
+ dpkg-source --after-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120412-0618
+Build finished at 20130517-1252
-r-bioc-limma_3.12.0~dfsg-1_kfreebsd-amd64.changes:
+r-bioc-limma_3.16.3~dfsg-1_kfreebsd-amd64.changes:
Format: 1.8
-Date: Thu, 12 Apr 2012 11:40:40 +0900
+Date: Thu, 16 May 2013 15:16:13 +0200
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: kfreebsd-amd64
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
Distribution: sid
Urgency: low
-Maintainer: kfreebsd-amd64 Build Daemon (fasch) <buildd_kfreebsd-amd64-fasch at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Maintainer: kfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.12.0~dfsg-1) unstable; urgency=low
+ r-bioc-limma (3.16.3~dfsg-1) unstable; urgency=low
.
[ Charles Plessy ]
- 2d3420e Imported Upstream version 3.12.0~dfsg
- 4bbb8e4 Document LIMMA's copyright as a whole.
+ ff8c6db Imported Upstream version 3.12.1~dfsg
+ b4f097e Effective license is GPL-2, without the '+', as R is GPL-2.
.
[ Andreas Tille ]
- 8a61a4c Obtain references from inst/CITATION
+ * Imported new upstream version 3.16.3~dfsg
+ * debian/control
+ - added myself to Uploaders
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - Fake normalisation as it is done by `cme fix dpkg-control`
+ (the command did actually no change - the control file was
+ brought into shape manually)
+ - Removed versioned dependency of r-base-dev
+ * debian/copyright:
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - checked new upstream version and bumped version number
+ - Add years to Copyright fields
+ * debian/rules: Remove executable flag from doc files
+ * debian/source/format: Add explicit source format specification
Checksums-Sha1:
- 45199b85fb8720ea8e122366c956deb736ca71f6 808554 r-bioc-limma_3.12.0~dfsg-1_kfreebsd-amd64.deb
+ 9e2cdb506a59ed00fdbe7fcbe46d1334b97ec531 1619198 r-bioc-limma_3.16.3~dfsg-1_kfreebsd-amd64.deb
Checksums-Sha256:
- 0da194863792733acc6904e0635959e6f7a6cb6f3dd5d932e3469e88e0a18cf9 808554 r-bioc-limma_3.12.0~dfsg-1_kfreebsd-amd64.deb
+ 76d06838787c17ae7b1cf2776aaef3c598d6925ea535f24f9d081f815cd28fcc 1619198 r-bioc-limma_3.16.3~dfsg-1_kfreebsd-amd64.deb
Files:
- 487d77cb31f75bab5065e4d984104b9a 808554 gnu-r optional r-bioc-limma_3.12.0~dfsg-1_kfreebsd-amd64.deb
+ d269271c5a342b53001c33169e3eb840 1619198 gnu-r optional r-bioc-limma_3.16.3~dfsg-1_kfreebsd-amd64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.12.0~dfsg-1_kfreebsd-amd64.deb
+r-bioc-limma_3.16.3~dfsg-1_kfreebsd-amd64.deb
─────────────────────────────────────────────
new debian package, version 2.0.
- size 808554 bytes: control archive= 1548 bytes.
- 784 bytes, 16 lines control
- 2290 bytes, 30 lines md5sums
+ size 1619198 bytes: control archive= 1682 bytes.
+ 793 bytes, 16 lines control
+ 2621 bytes, 34 lines md5sums
Package: r-bioc-limma
- Version: 3.12.0~dfsg-1
+ Version: 3.16.3~dfsg-1
Architecture: kfreebsd-amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 931
- Depends: libc0.1 (>= 2.3), r-base-core (>= 2.15.0-1)
+ Installed-Size: 1790
+ Depends: libc0.1 (>= 2.3), r-base-core (>= 3.0.1~20130512-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -726,51 +1003,56 @@ r-bioc-limma_3.12.0~dfsg-1_kfreebsd-amd64.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2012-04-12 06:17 ./
-drwxr-xr-x root/root 0 2012-04-12 06:17 ./usr/
-drwxr-xr-x root/root 0 2012-04-12 06:17 ./usr/lib/
-drwxr-xr-x root/root 0 2012-04-12 06:17 ./usr/lib/R/
-drwxr-xr-x root/root 0 2012-04-12 06:17 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2012-04-12 06:17 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 1901 2012-04-12 06:17 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 969 2012-04-12 06:17 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2012-04-12 06:17 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 1058 2012-04-12 06:17 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 6157 2012-04-12 06:17 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5727 2012-04-12 06:17 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2943 2012-04-12 06:17 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 220 2012-04-12 06:17 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 521 2012-04-12 06:17 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
-drwxr-xr-x root/root 0 2012-04-12 06:17 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 10904 2012-04-12 06:17 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2012-04-12 06:17 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 383 2012-04-12 06:17 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 202053 2012-04-12 06:17 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3826 2012-04-12 06:17 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2012-04-12 06:17 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 91993 2012-04-12 06:17 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 673 2012-04-12 06:17 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 1711 2012-04-12 06:17 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 42743 2012-04-12 06:17 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 1230 2012-04-12 06:17 ./usr/lib/R/site-library/limma/CITATION
--rw-r--r-- root/root 3989 2012-04-12 06:17 ./usr/lib/R/site-library/limma/NEWS.Rd
-drwxr-xr-x root/root 0 2012-04-12 06:17 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1389 2012-04-12 06:17 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 474660 2012-04-12 06:17 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3359 2012-04-12 06:17 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 6317 2012-04-12 06:17 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 2431 2012-04-12 06:17 ./usr/lib/R/site-library/limma/help/aliases.rds
-drwxr-xr-x root/root 0 2012-04-12 06:17 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 35015 2012-04-12 06:17 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2012-04-12 06:17 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 9754 2012-04-12 06:17 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2012-04-12 06:17 ./usr/share/
-drwxr-xr-x root/root 0 2012-04-12 06:17 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-04-12 06:17 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 264 2012-04-12 06:17 ./usr/share/doc/r-bioc-limma/README.Debian
--rw-r--r-- root/root 2457 2012-04-12 06:17 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 27996 2012-03-30 22:32 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 683 2012-04-12 06:17 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2013-05-17 12:52 ./
+drwxr-xr-x root/root 0 2013-05-17 12:52 ./usr/
+drwxr-xr-x root/root 0 2013-05-17 12:52 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-17 12:52 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-17 12:52 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-17 12:52 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 2046 2013-05-17 12:52 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 990 2013-05-17 12:52 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2013-05-17 12:52 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 1072 2013-05-17 12:52 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 6375 2013-05-17 12:52 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5944 2013-05-17 12:52 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 3089 2013-05-17 12:52 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 219 2013-05-17 12:52 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 541 2013-05-17 12:52 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2013-05-17 12:52 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10992 2013-05-17 12:52 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2013-05-17 12:52 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 1056 2013-05-17 12:52 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 206558 2013-05-17 12:52 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 4112 2013-05-17 12:52 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2013-05-17 12:52 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 102936 2013-05-17 12:52 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 673 2013-05-17 12:52 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 1711 2013-05-17 12:52 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 45597 2013-05-17 12:52 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 806089 2013-05-17 12:52 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 963 2013-05-17 12:52 ./usr/lib/R/site-library/limma/CITATION
+-rw-r--r-- root/root 11214 2013-05-17 12:52 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2013-05-17 12:52 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1418 2013-05-17 12:52 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 496642 2013-05-17 12:52 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3426 2013-05-17 12:52 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6703 2013-05-17 12:52 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2567 2013-05-17 12:52 ./usr/lib/R/site-library/limma/help/aliases.rds
+drwxr-xr-x root/root 0 2013-05-17 12:52 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 37337 2013-05-17 12:52 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2013-05-17 12:52 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 10085 2013-05-17 12:52 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2013-05-17 12:52 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-17 12:52 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-17 12:52 ./usr/share/doc/r-bioc-limma/
+drwxr-xr-x root/root 0 2013-05-17 12:52 ./usr/share/doc/r-bioc-limma/tests/
+-rw-r--r-- root/root 2097 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.R.gz
+-rw-r--r-- root/root 14649 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save.gz
+-rw-r--r-- root/root 437 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.test
+-rw-r--r-- root/root 264 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 2605 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 31097 2013-05-02 00:02 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 1153 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -784,167 +1066,26 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-ka-sbuild-1334211213-59938/build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-amd64-kl0wMV
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages will be REMOVED:
- cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config* gettext*
- gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
- intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
- libdatrie1* libffi5* libfontconfig1* libfreetype6* libgfortran3*
- libglib2.0-0* libice6* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf*
- libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1*
- libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0* libpng12-dev*
- libreadline-dev* libreadline6-dev* libsm6* libthai-data* libthai0* libtiff4*
- libtinfo-dev* libunistring0* libx11-6* libx11-data* libxau6* libxcb-render0*
- libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2* libxml2* libxrender1*
- libxss1* libxt6* man-db* po-debconf* r-base-core* r-base-dev* tcl8.5* tk8.5*
- ttf-dejavu-core* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
-0 upgraded, 0 newly installed, 72 to remove and 10 not upgraded.
-After this operation, 122 MB disk space will be freed.
-(Reading database ... 15542 files and directories currently installed.)
-Removing r-base-dev ...
-Removing cdbs ...
-Removing debhelper ...
-Removing dpatch ...
-Purging configuration files for dpatch ...
-Removing file ...
-Removing r-base-core ...
-Purging configuration files for r-base-core ...
-Removing libpango1.0-0:kfreebsd-amd64 ...
-Purging configuration files for libpango1.0-0:kfreebsd-amd64 ...
-Removing fontconfig ...
-Purging configuration files for fontconfig ...
-Removing tk8.5 ...
-Purging configuration files for tk8.5 ...
-Removing libxft2:kfreebsd-amd64 ...
-Purging configuration files for libxft2:kfreebsd-amd64 ...
-Removing libcairo2:kfreebsd-amd64 ...
-Purging configuration files for libcairo2:kfreebsd-amd64 ...
-Removing libfontconfig1:kfreebsd-amd64 ...
-Purging configuration files for libfontconfig1:kfreebsd-amd64 ...
-Removing fontconfig-config ...
-Purging configuration files for fontconfig-config ...
-Removing po-debconf ...
-Removing intltool-debian ...
-Removing gettext ...
-Removing gettext-base ...
-Removing gfortran ...
-Removing gfortran-4.6 ...
-Removing man-db ...
-Purging configuration files for man-db ...
-Removing groff-base ...
-Purging configuration files for groff-base ...
-Removing html2text ...
-Purging configuration files for html2text ...
-Removing liblapack-dev ...
-Removing libblas-dev ...
-Removing liblapack3gf ...
-Purging configuration files for liblapack3gf ...
-Removing libblas3gf ...
-Purging configuration files for libblas3gf ...
-Removing libbz2-dev:kfreebsd-amd64 ...
-Removing libcroco3:kfreebsd-amd64 ...
-Purging configuration files for libcroco3:kfreebsd-amd64 ...
-Removing libthai0:kfreebsd-amd64 ...
-Purging configuration files for libthai0:kfreebsd-amd64 ...
-Removing libdatrie1:kfreebsd-amd64 ...
-Purging configuration files for libdatrie1:kfreebsd-amd64 ...
-Removing libglib2.0-0:kfreebsd-amd64 ...
-Purging configuration files for libglib2.0-0:kfreebsd-amd64 ...
-Removing libffi5:kfreebsd-amd64 ...
-Purging configuration files for libffi5:kfreebsd-amd64 ...
-Removing libfreetype6:kfreebsd-amd64 ...
-Purging configuration files for libfreetype6:kfreebsd-amd64 ...
-Removing libgfortran3:kfreebsd-amd64 ...
-Purging configuration files for libgfortran3:kfreebsd-amd64 ...
-Removing libxt6:kfreebsd-amd64 ...
-Purging configuration files for libxt6:kfreebsd-amd64 ...
-Removing libsm6:kfreebsd-amd64 ...
-Purging configuration files for libsm6:kfreebsd-amd64 ...
-Removing libice6:kfreebsd-amd64 ...
-Purging configuration files for libice6:kfreebsd-amd64 ...
-Removing libtiff4:kfreebsd-amd64 ...
-Purging configuration files for libtiff4:kfreebsd-amd64 ...
-Removing libjpeg8-dev:kfreebsd-amd64 ...
-Removing libjpeg8:kfreebsd-amd64 ...
-Removing libmagic1:kfreebsd-amd64 ...
-Purging configuration files for libmagic1:kfreebsd-amd64 ...
-Removing libncurses5-dev ...
-Removing libpaper-utils ...
-Removing libpaper1 ...
-Purging configuration files for libpaper1 ...
-Removing libpcre3-dev ...
-Removing libpcrecpp0:kfreebsd-amd64 ...
-Purging configuration files for libpcrecpp0:kfreebsd-amd64 ...
-Removing libpipeline1:kfreebsd-amd64 ...
-Purging configuration files for libpipeline1:kfreebsd-amd64 ...
-Removing libpixman-1-0:kfreebsd-amd64 ...
-Purging configuration files for libpixman-1-0:kfreebsd-amd64 ...
-Removing libpng12-dev ...
-Removing libreadline-dev:kfreebsd-amd64 ...
-Removing libreadline6-dev:kfreebsd-amd64 ...
-Removing libthai-data ...
-Removing libtinfo-dev:kfreebsd-amd64 ...
-Removing libunistring0:kfreebsd-amd64 ...
-Purging configuration files for libunistring0:kfreebsd-amd64 ...
-Removing libxss1:kfreebsd-amd64 ...
-Purging configuration files for libxss1:kfreebsd-amd64 ...
-Removing libxrender1:kfreebsd-amd64 ...
-Purging configuration files for libxrender1:kfreebsd-amd64 ...
-Removing libxext6:kfreebsd-amd64 ...
-Purging configuration files for libxext6:kfreebsd-amd64 ...
-Removing libx11-6:kfreebsd-amd64 ...
-Purging configuration files for libx11-6:kfreebsd-amd64 ...
-Removing libx11-data ...
-Removing libxcb-shm0:kfreebsd-amd64 ...
-Purging configuration files for libxcb-shm0:kfreebsd-amd64 ...
-Removing libxcb-render0:kfreebsd-amd64 ...
-Purging configuration files for libxcb-render0:kfreebsd-amd64 ...
-Removing libxcb1:kfreebsd-amd64 ...
-Purging configuration files for libxcb1:kfreebsd-amd64 ...
-Removing libxau6:kfreebsd-amd64 ...
-Purging configuration files for libxau6:kfreebsd-amd64 ...
-Removing libxdmcp6:kfreebsd-amd64 ...
-Purging configuration files for libxdmcp6:kfreebsd-amd64 ...
-Removing libxml2 ...
-Purging configuration files for libxml2 ...
-Removing tcl8.5 ...
-Purging configuration files for tcl8.5 ...
-Removing ttf-dejavu-core ...
-Removing unzip ...
-Purging configuration files for unzip ...
-Removing x11-common ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of stop.
-Purging configuration files for x11-common ...
-dpkg: warning: while removing x11-common, directory '/etc/X11' not empty so not removed.
-Removing xdg-utils ...
-Removing zip ...
-Removing zlib1g-dev:kfreebsd-amd64 ...
+Purging /var/lib/schroot/mount/sid-ka-sbuild-1368794888-61242/build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-amd64-Cz6ptv
+Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: kfreebsd-amd64
-Build-Space: 2950
-Build-Time: 26
+Build-Space: 5580
+Build-Time: 25
Distribution: sid
-Install-Time: 215
-Job: r-bioc-limma_3.12.0~dfsg-1
+Install-Time: 202
+Job: r-bioc-limma_3.16.3~dfsg-1
Package: r-bioc-limma
-Package-Time: 269
-Source-Version: 3.12.0~dfsg-1
-Space: 2950
+Package-Time: 275
+Source-Version: 3.16.3~dfsg-1
+Space: 5580
Status: successful
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120412-0618
-Build needed 00:04:29, 2950k disc space
-Signature with key '94C0145B' requested:
+Finished at 20130517-1252
+Build needed 00:04:35, 5580k disc space
+Signature with key '1B08409D' requested:
diff --git a/kfreebsd-i386.log b/kfreebsd-i386.log
index b7bcfd3..0094719 100644
--- a/kfreebsd-i386.log
+++ b/kfreebsd-i386.log
@@ -1,77 +1,62 @@
-From buildd at field.debian.org Thu Apr 12 04:13:50 2012
-Return-path: <buildd at field.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+From buildd at finzi.debian.org Fri May 17 13:06:19 2013
+Return-path: <buildd at finzi.debian.org>
+Received: from mailly.debian.org ([82.195.75.114])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
- by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at field.debian.org>)
- id 1SIBPp-0003Pp-Bz
- for logs at buildd.debian.org; Thu, 12 Apr 2012 04:13:50 +0000
-Received: from field.debian.org ([194.177.211.210])
+ CN=mailly.debian.org, EMAIL=hostmaster at mailly.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:DHE_RSA_AES_128_CBC_SHA1:16)
+ (Exim 4.72) (envelope-from <buildd at finzi.debian.org>)
+ id 1UdKMV-0007CO-LY
+ for logs at buildd.debian.org; Fri, 17 May 2013 13:06:19 +0000
+Received: from finzi.debian.org ([206.12.19.111])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=field.debian.org, EMAIL=hostmaster at field.debian.org (verified)
- by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at field.debian.org>)
- id 1SIBPn-0005At-Su; Thu, 12 Apr 2012 04:13:48 +0000
-Received: from buildd by field.debian.org with local (Exim 4.72)
- (envelope-from <buildd at field.debian.org>)
- id 1SIBPm-000Mur-Vp; Thu, 12 Apr 2012 04:13:47 +0000
-Message-Id: <E1SIBPm-000Mur-Vp at field.debian.org>
+ CN=finzi.debian.org, EMAIL=hostmaster at finzi.debian.org (verified)
+ by mailly.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:256)
+ (Exim 4.80) (envelope-from <buildd at finzi.debian.org>)
+ id 1UdKMU-0008IX-5E; Fri, 17 May 2013 13:06:18 +0000
+Received: from buildd by finzi.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at finzi.debian.org>)
+ id 1UdKMQ-000D35-Mf; Fri, 17 May 2013 13:06:16 +0000
+Message-Id: <E1UdKMQ-000D35-Mf at finzi.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Thu, 12 Apr 2012 04:13:46 +0000
-From: buildd on field <buildd at field.debian.org>
-To: logs at buildd.debian.org,aurelien at aurel32.net,christoph at debian.org
-Subject: Log for successful build of r-bioc-limma_3.12.0~dfsg-1 on
+Date: Fri, 17 May 2013 13:06:14 +0000
+From: buildd on finzi <buildd at finzi.debian.org>
+To: logs at buildd.debian.org,christoph at debian.org
+Subject: Log for successful build of r-bioc-limma_3.16.3~dfsg-1 on
kfreebsd-i386 (dist=sid)
-Key-Id: B2824833
+Key-Id: B31C365A
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on field.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on finzi.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.12.0~dfsg-1 (kfreebsd-i386) 12 Apr 2012 04:07 ║
+║ r-bioc-limma 3.16.3~dfsg-1 (kfreebsd-i386) 17 May 2013 13:03 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.12.0~dfsg-1
-Source Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
+Source Version: 3.16.3~dfsg-1
Architecture: kfreebsd-i386
-Hit http://ftp.gr.debian.org sid InRelease
-Hit http://ftp.gr.debian.org sid/main Sources/DiffIndex
-Hit http://incoming.debian.org sid InRelease
-Ign http://incoming.debian.org InRelease
-Hit http://ftp.gr.debian.org sid/contrib Sources/DiffIndex
-Hit http://ftp.gr.debian.org sid/non-free Sources/DiffIndex
-Hit http://ftp.gr.debian.org sid/main kfreebsd-i386 Packages/DiffIndex
-Hit http://ftp.gr.debian.org sid/contrib kfreebsd-i386 Packages/DiffIndex
-Hit http://ftp.gr.debian.org sid/non-free kfreebsd-i386 Packages/DiffIndex
-Ign http://ftp.gr.debian.org sid/contrib TranslationIndex
-Hit http://ftp.gr.debian.org sid/main TranslationIndex
-Ign http://ftp.gr.debian.org sid/non-free TranslationIndex
-Get:1 http://incoming.debian.org Release.gpg [836 B]
-Hit http://ftp.gr.debian.org sid/contrib Translation-en
-Hit http://ftp.gr.debian.org sid/main Translation-en
-Hit http://ftp.gr.debian.org sid/non-free Translation-en
-Hit http://incoming.debian.org sid/main Sources/DiffIndex
-Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
-Hit http://incoming.debian.org sid/non-free Sources/DiffIndex
-Hit http://incoming.debian.org sid/main kfreebsd-i386 Packages/DiffIndex
-Hit http://incoming.debian.org sid/contrib kfreebsd-i386 Packages/DiffIndex
-Hit http://incoming.debian.org sid/non-free kfreebsd-i386 Packages/DiffIndex
-Ign http://incoming.debian.org sid/contrib TranslationIndex
-Hit http://incoming.debian.org sid/main TranslationIndex
-Ign http://incoming.debian.org sid/non-free TranslationIndex
-Get:2 http://incoming.debian.org Release [1601 B]
-Hit http://incoming.debian.org sid/contrib Translation-en
-Hit http://incoming.debian.org sid/main Translation-en
-Hit http://incoming.debian.org sid/non-free Translation-en
-Hit http://incoming.debian.org Sources
-Get:3 http://incoming.debian.org Packages [734 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 736 kB in 5s (141 kB/s)
+Get:1 http://incoming.debian.org unstable InRelease [205 kB]
+Get:2 http://mirror-ubc.debian.org unstable InRelease [205 kB]
+Get:3 http://mirror-ubc.debian.org unstable/main Sources [6729 kB]
+Get:4 http://incoming.debian.org buildd-unstable InRelease [111 kB]
+Get:5 http://incoming.debian.org unstable/main Sources [6729 kB]
+Get:6 http://mirror-ubc.debian.org unstable/contrib Sources [53.7 kB]
+Get:7 http://mirror-ubc.debian.org unstable/non-free Sources [103 kB]
+Get:8 http://mirror-ubc.debian.org unstable/main kfreebsd-i386 Packages [5907 kB]
+Get:9 http://mirror-ubc.debian.org unstable/contrib kfreebsd-i386 Packages [36.7 kB]
+Get:10 http://incoming.debian.org unstable/contrib Sources [53.7 kB]
+Get:11 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:12 http://incoming.debian.org unstable/main kfreebsd-i386 Packages [5907 kB]
+Get:13 http://incoming.debian.org unstable/contrib kfreebsd-i386 Packages [36.7 kB]
+Get:14 http://incoming.debian.org buildd-unstable/main Sources [101 kB]
+Get:15 http://incoming.debian.org buildd-unstable/contrib Sources [873 B]
+Get:16 http://incoming.debian.org buildd-unstable/non-free Sources [2683 B]
+Get:17 http://incoming.debian.org buildd-unstable/main kfreebsd-i386 Packages [58.0 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib kfreebsd-i386 Packages [14 B]
+Fetched 26.3 MB in 17s (1490 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -92,11 +77,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 288 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (dsc) [2030 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (tar) [283 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (diff) [3098 B]
-Fetched 288 kB in 1s (181 kB/s)
+Need to get 1058 kB of source archives.
+Get:1 http://mirror-ubc.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (dsc) [1409 B]
+Get:2 http://mirror-ubc.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (tar) [1052 kB]
+Get:3 http://mirror-ubc.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (diff) [4167 B]
+Fetched 1058 kB in 0s (1924 kB/s)
Download complete and in download only mode
Check arch
@@ -109,351 +94,570 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.2-1)
+build-essential: already installed (11.6)
+fakeroot: missing
Checking for dependency conflicts...
-Installing positive dependencies:
+Installing positive dependencies: fakeroot
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
+The following NEW packages will be installed:
+ fakeroot
+0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded.
+Need to get 109 kB of archives.
+After this operation, 231 kB of additional disk space will be used.
+Get:1 http://mirror-ubc.debian.org/debian/ unstable/main fakeroot kfreebsd-i386 1.18.4-2 [109 kB]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 109 kB in 0s (5451 kB/s)
+Selecting previously unselected package fakeroot.
+(Reading database ... 11247 files and directories currently installed.)
+Unpacking fakeroot (from .../fakeroot_1.18.4-2_kfreebsd-i386.deb) ...
+Setting up fakeroot (1.18.4-2) ...
+update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, libc-bin, login, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev
Checking for already installed dependencies...
-base-files: already installed (6.7)
-base-passwd: already installed (3.5.24)
-bash: already installed (4.2-1)
-coreutils: already installed (8.13-3.1)
+base-files: already installed (7.2)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2+dfsg-1)
+bsdutils: already installed (1:2.20.1-5.3)
+coreutils: already installed (8.13-3.3)
dash: already installed (0.5.7-3)
-debianutils: already installed (4.2.2)
-diffutils: already installed (1:3.2-2)
-dpkg: already installed (1.16.2)
-e2fsprogs: already installed (1.42.2-2)
-findutils: already installed (4.4.2-4)
-freebsd-utils: already installed (9.0+ds1-1)
-grep: already installed (2.10-1)
-gzip: already installed (1.4-5)
-hostname: already installed (3.11)
-ncurses-base: already installed (5.9-4)
-ncurses-bin: already installed (5.9-6)
-perl-base: already installed (5.14.2-9)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.5-1)
-sysvinit-utils: already installed (2.88dsf-22.1)
-sysvinit: already installed (2.88dsf-22.1)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-4)
-util-linux: already installed (2.20.1-4)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1.1)
+findutils: already installed (4.4.2-5)
+freebsd-utils: already installed (9.0+ds1-11)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+libc-bin: already installed (2.13-38)
+login: already installed (1:4.1.5.1-1)
+ncurses-base: already installed (5.9-10)
+ncurses-bin: already installed (5.9-10)
+perl-base: already installed (5.14.2-21)
+sed: already installed (4.2.1-10)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-5)
+util-linux: already installed (2.20.1-5.3)
libc6-dev: already installed (~*=PROVIDED=*=)
-gcc: already installed (4:4.6.3-4 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-4 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.2 >= 1.13.5 is satisfied)
+gcc: already installed (4:4.7.2-1 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.7.2-1 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120410
+Using default version 9.20130516
cdbs: missing
r-base-dev: missing
-Using default version 2.15.0-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- dpatch file fontconfig fontconfig-config gettext gettext-base gfortran
- gfortran-4.6 groff-base html2text intltool-debian libblas-dev libblas3gf
- libbz2-dev libcairo2 libcroco3 libdatrie1 libffi5 libfontconfig1
- libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8 libjpeg8-dev
- liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
- libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0
- libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0
- libtiff4 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6
- libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
- libxrender1 libxss1 libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5
- ttf-dejavu-core unzip x11-common xdg-utils zip zlib1g-dev
+ bsdmainutils cpp-4.7 file fontconfig fontconfig-config fonts-dejavu-core
+ g++-4.7 gcc-4.7 gcc-4.7-base gcc-4.8-base gettext gettext-base gfortran
+ gfortran-4.7 groff-base html2text intltool-debian libasprintf-dev
+ libasprintf0c2 libblas-dev libblas3 libbz2-dev libc-dev-bin libc0.1
+ libc0.1-dev libcairo2 libcroco3 libdatrie1 libffi6 libfontconfig1
+ libfreetype6 libgcc-4.7-dev libgcc1 libgettextpo-dev libgettextpo0
+ libgfortran-4.7-dev libgfortran3 libglib2.0-0 libgomp1 libice6 libjbig0
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5
+ libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev
+ libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0
+ libreadline-dev libreadline6-dev libsm6 libstdc++6 libstdc++6-4.7-dev
+ libthai-data libthai0 libtiff5 libtinfo-dev libtinfo5 libunistring0 libx11-6
+ libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
+ libxft2 libxml2 libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf
+ r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+ zlib1g-dev
Suggested packages:
- devscripts dh-make curl defoma gettext-doc gfortran-doc gfortran-4.6-doc
- libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
- ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
- libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base
- texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
- texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
- texlive-latex-extra texinfo texi2html tclreadline gvfs-bin
+ wamerican wordlist whois vacation devscripts gcc-4.7-locales dh-make
+ gcc-4.7-doc libstdc++6-4.7-dbg libmudflap0-4.7-dev libgcc1-dbg libgomp1-dbg
+ libitm1-dbg libquadmath0-dbg libmudflap0-dbg gettext-doc gfortran-doc
+ gfortran-4.7-doc libgfortran3-dbg groff glibc-doc ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp libstdc++6-4.7-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
+ texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
+ texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
+ texi2html tcl-tclreadline gvfs-bin
Recommended packages:
- autotools-dev patchutils autopoint libglib2.0-data shared-mime-info xml-core
- libmail-sendmail-perl r-recommended r-doc-html xterm x-terminal-emulator
- libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
- x11-xserver-utils
+ autotools-dev curl wget lynx-cur autopoint manpages-dev libc0.1-i686
+ libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl
+ r-recommended r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl
+ libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
- cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
- gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
- libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libffi5 libfontconfig1
- libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8 libjpeg8-dev
- liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
- libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0
- libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0
- libtiff4 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6
- libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
- libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5
- tk8.5 ttf-dejavu-core unzip x11-common xdg-utils zip zlib1g-dev
+ bsdmainutils cdbs debhelper file fontconfig fontconfig-config
+ fonts-dejavu-core gettext gettext-base gfortran gfortran-4.7 groff-base
+ html2text intltool-debian libasprintf-dev libasprintf0c2 libblas-dev
+ libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libffi6 libfontconfig1
+ libfreetype6 libgettextpo-dev libgettextpo0 libgfortran-4.7-dev libgfortran3
+ libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3
+ libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3
+ libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff5
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core
+ ucf unzip x11-common xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.7 g++-4.7 gcc-4.7 gcc-4.7-base gcc-4.8-base libc-dev-bin libc0.1
+ libc0.1-dev libgcc-4.7-dev libgcc1 libgomp1 libncurses5 libquadmath0
+ libstdc++6 libstdc++6-4.7-dev libtinfo5 ncurses-bin
+17 upgraded, 82 newly installed, 0 to remove and 13 not upgraded.
+Need to get 82.3 MB of archives.
+After this operation, 118 MB of additional disk space will be used.
+Get:1 http://mirror-ubc.debian.org/debian/ unstable/main libc0.1-dev kfreebsd-i386 2.17-3 [2132 kB]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main libcroco3 kfreebsd-i386 0.6.8-2 [134 kB]
+Get:3 http://mirror-ubc.debian.org/debian/ unstable/main libc-dev-bin kfreebsd-i386 2.17-3 [229 kB]
+Get:4 http://mirror-ubc.debian.org/debian/ unstable/main libgomp1 kfreebsd-i386 4.8.0-7 [28.3 kB]
+Get:5 http://mirror-ubc.debian.org/debian/ unstable/main gcc-4.8-base kfreebsd-i386 4.8.0-7 [148 kB]
+Get:6 http://mirror-ubc.debian.org/debian/ unstable/main libgcc1 kfreebsd-i386 1:4.8.0-7 [52.8 kB]
+Get:7 http://mirror-ubc.debian.org/debian/ unstable/main libquadmath0 kfreebsd-i386 4.8.0-7 [217 kB]
+Get:8 http://mirror-ubc.debian.org/debian/ unstable/main libc0.1 kfreebsd-i386 2.17-3 [3887 kB]
+Get:9 http://mirror-ubc.debian.org/debian/ unstable/main libstdc++6 kfreebsd-i386 4.8.0-7 [349 kB]
+Get:10 http://mirror-ubc.debian.org/debian/ unstable/main libtinfo5 kfreebsd-i386 5.9+20130504-1 [289 kB]
+Get:11 http://mirror-ubc.debian.org/debian/ unstable/main libncurses5 kfreebsd-i386 5.9+20130504-1 [116 kB]
+Get:12 http://mirror-ubc.debian.org/debian/ unstable/main ncurses-bin kfreebsd-i386 5.9+20130504-1 [357 kB]
+Get:13 http://mirror-ubc.debian.org/debian/ unstable/main libpipeline1 kfreebsd-i386 1.2.3-1 [39.4 kB]
+Get:14 http://mirror-ubc.debian.org/debian/ unstable/main groff-base kfreebsd-i386 1.22.2-2 [733 kB]
+Get:15 http://mirror-ubc.debian.org/debian/ unstable/main bsdmainutils kfreebsd-i386 9.0.5 [205 kB]
+Get:16 http://mirror-ubc.debian.org/debian/ unstable/main man-db kfreebsd-i386 2.6.3-6 [889 kB]
+Get:17 http://mirror-ubc.debian.org/debian/ unstable/main libasprintf0c2 kfreebsd-i386 0.18.1.1-10 [27.0 kB]
+Get:18 http://mirror-ubc.debian.org/debian/ unstable/main libmagic1 kfreebsd-i386 1:5.14-1 [218 kB]
+Get:19 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3 kfreebsd-i386 1:8.31-2 [247 kB]
+Get:20 http://mirror-ubc.debian.org/debian/ unstable/main libxml2 kfreebsd-i386 2.8.0+dfsg1-7+nmu1 [905 kB]
+Get:21 http://mirror-ubc.debian.org/debian/ unstable/main libfreetype6 kfreebsd-i386 2.4.9-1.1 [453 kB]
+Get:22 http://mirror-ubc.debian.org/debian/ unstable/main ucf all 3.0025+nmu3 [70.8 kB]
+Get:23 http://mirror-ubc.debian.org/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
+Get:24 http://mirror-ubc.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
+Get:25 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:26 http://mirror-ubc.debian.org/debian/ unstable/main libfontconfig1 kfreebsd-i386 2.9.0-7.1 [300 kB]
+Get:27 http://mirror-ubc.debian.org/debian/ unstable/main libpixman-1-0 kfreebsd-i386 0.26.0-4 [442 kB]
+Get:28 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-0 kfreebsd-i386 1.2.49-4 [192 kB]
+Get:29 http://mirror-ubc.debian.org/debian/ unstable/main libxau6 kfreebsd-i386 1:1.0.7-1 [18.5 kB]
+Get:30 http://mirror-ubc.debian.org/debian/ unstable/main libxdmcp6 kfreebsd-i386 1:1.1.1-1 [26.4 kB]
+Get:31 http://mirror-ubc.debian.org/debian/ unstable/main libxcb1 kfreebsd-i386 1.8.1-2 [53.8 kB]
+Get:32 http://mirror-ubc.debian.org/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:33 http://mirror-ubc.debian.org/debian/ unstable/main libx11-6 kfreebsd-i386 2:1.5.0-1 [906 kB]
+Get:34 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-render0 kfreebsd-i386 1.8.1-2 [19.6 kB]
+Get:35 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-shm0 kfreebsd-i386 1.8.1-2 [10.5 kB]
+Get:36 http://mirror-ubc.debian.org/debian/ unstable/main libxext6 kfreebsd-i386 2:1.3.1-2 [55.5 kB]
+Get:37 http://mirror-ubc.debian.org/debian/ unstable/main libxrender1 kfreebsd-i386 1:0.9.7-1 [32.4 kB]
+Get:38 http://mirror-ubc.debian.org/debian/ unstable/main libcairo2 kfreebsd-i386 1.12.14-4 [1038 kB]
+Get:39 http://mirror-ubc.debian.org/debian/ unstable/main libffi6 kfreebsd-i386 3.0.13-4 [17.6 kB]
+Get:40 http://mirror-ubc.debian.org/debian/ unstable/main libglib2.0-0 kfreebsd-i386 2.36.1-2build1 [2036 kB]
+Get:41 http://mirror-ubc.debian.org/debian/ unstable/main libdatrie1 kfreebsd-i386 0.2.6-2 [30.9 kB]
+Get:42 http://mirror-ubc.debian.org/debian/ unstable/main libunistring0 kfreebsd-i386 0.9.3-5 [440 kB]
+Get:43 http://mirror-ubc.debian.org/debian/ unstable/main libgettextpo0 kfreebsd-i386 0.18.1.1-10 [141 kB]
+Get:44 http://mirror-ubc.debian.org/debian/ unstable/main libgfortran3 kfreebsd-i386 4.8.0-7 [327 kB]
+Get:45 http://mirror-ubc.debian.org/debian/ unstable/main x11-common all 1:7.7+3 [284 kB]
+Get:46 http://mirror-ubc.debian.org/debian/ unstable/main libice6 kfreebsd-i386 2:1.0.8-2 [61.5 kB]
+Get:47 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg8 kfreebsd-i386 8d-1 [132 kB]
+Get:48 http://mirror-ubc.debian.org/debian/ unstable/main libthai-data all 0.1.19-2 [156 kB]
+Get:49 http://mirror-ubc.debian.org/debian/ unstable/main libthai0 kfreebsd-i386 0.1.19-2 [43.6 kB]
+Get:50 http://mirror-ubc.debian.org/debian/ unstable/main libxft2 kfreebsd-i386 2.3.1-1 [60.9 kB]
+Get:51 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig kfreebsd-i386 2.9.0-7.1 [347 kB]
+Get:52 http://mirror-ubc.debian.org/debian/ unstable/main libpango1.0-0 kfreebsd-i386 1.30.0-1 [463 kB]
+Get:53 http://mirror-ubc.debian.org/debian/ unstable/main libpaper1 kfreebsd-i386 1.1.24+nmu2 [21.9 kB]
+Get:54 http://mirror-ubc.debian.org/debian/ unstable/main libpcrecpp0 kfreebsd-i386 1:8.31-2 [129 kB]
+Get:55 http://mirror-ubc.debian.org/debian/ unstable/main libsm6 kfreebsd-i386 2:1.2.1-2 [33.5 kB]
+Get:56 http://mirror-ubc.debian.org/debian/ unstable/main libjbig0 kfreebsd-i386 2.0-2 [31.8 kB]
+Get:57 http://mirror-ubc.debian.org/debian/ unstable/main libtiff5 kfreebsd-i386 4.0.2-6 [237 kB]
+Get:58 http://mirror-ubc.debian.org/debian/ unstable/main libxss1 kfreebsd-i386 1:1.2.2-1 [17.5 kB]
+Get:59 http://mirror-ubc.debian.org/debian/ unstable/main libxt6 kfreebsd-i386 1:1.1.3-1 [205 kB]
+Get:60 http://mirror-ubc.debian.org/debian/ unstable/main g++-4.7 kfreebsd-i386 4.7.3-4 [5452 kB]
+Get:61 http://mirror-ubc.debian.org/debian/ unstable/main gcc-4.7 kfreebsd-i386 4.7.3-4 [5420 kB]
+Get:62 http://mirror-ubc.debian.org/debian/ unstable/main libstdc++6-4.7-dev kfreebsd-i386 4.7.3-4 [1643 kB]
+Get:63 http://mirror-ubc.debian.org/debian/ unstable/main libgcc-4.7-dev kfreebsd-i386 4.7.3-4 [364 kB]
+Get:64 http://mirror-ubc.debian.org/debian/ unstable/main cpp-4.7 kfreebsd-i386 4.7.3-4 [5010 kB]
+Get:65 http://mirror-ubc.debian.org/debian/ unstable/main gcc-4.7-base kfreebsd-i386 4.7.3-4 [149 kB]
+Get:66 http://mirror-ubc.debian.org/debian/ unstable/main file kfreebsd-i386 1:5.14-1 [53.8 kB]
+Get:67 http://mirror-ubc.debian.org/debian/ unstable/main gettext-base kfreebsd-i386 0.18.1.1-10 [131 kB]
+Get:68 http://mirror-ubc.debian.org/debian/ unstable/main cdbs all 0.4.121 [80.5 kB]
+Get:69 http://mirror-ubc.debian.org/debian/ unstable/main html2text kfreebsd-i386 1.3.2a-15 [101 kB]
+Get:70 http://mirror-ubc.debian.org/debian/ unstable/main libasprintf-dev kfreebsd-i386 0.18.1.1-10 [26.6 kB]
+Get:71 http://mirror-ubc.debian.org/debian/ unstable/main libgettextpo-dev kfreebsd-i386 0.18.1.1-10 [170 kB]
+Get:72 http://mirror-ubc.debian.org/debian/ unstable/main gettext kfreebsd-i386 0.18.1.1-10 [1747 kB]
+Get:73 http://mirror-ubc.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:74 http://mirror-ubc.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:75 http://mirror-ubc.debian.org/debian/ unstable/main debhelper all 9.20130516 [708 kB]
+Get:76 http://mirror-ubc.debian.org/debian/ unstable/main libgfortran-4.7-dev kfreebsd-i386 4.7.3-4 [400 kB]
+Get:77 http://mirror-ubc.debian.org/debian/ unstable/main gfortran-4.7 kfreebsd-i386 4.7.3-4 [5325 kB]
+Get:78 http://mirror-ubc.debian.org/debian/ unstable/main gfortran kfreebsd-i386 4:4.7.2-1 [1116 B]
+Get:79 http://mirror-ubc.debian.org/debian/ unstable/main libblas3 kfreebsd-i386 1.2.20110419-5 [213 kB]
+Get:80 http://mirror-ubc.debian.org/debian/ unstable/main libblas-dev kfreebsd-i386 1.2.20110419-5 [216 kB]
+Get:81 http://mirror-ubc.debian.org/debian/ unstable/main libbz2-dev kfreebsd-i386 1.0.6-4 [31.6 kB]
+Get:82 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg8-dev kfreebsd-i386 8d-1 [232 kB]
+Get:83 http://mirror-ubc.debian.org/debian/ unstable/main liblapack3 kfreebsd-i386 3.4.2+dfsg-1 [3349 kB]
+Get:84 http://mirror-ubc.debian.org/debian/ unstable/main liblapack-dev kfreebsd-i386 3.4.2+dfsg-1 [3707 kB]
+Get:85 http://mirror-ubc.debian.org/debian/ unstable/main libtinfo-dev kfreebsd-i386 5.9+20130504-1 [97.1 kB]
+Get:86 http://mirror-ubc.debian.org/debian/ unstable/main libncurses5-dev kfreebsd-i386 5.9+20130504-1 [212 kB]
+Get:87 http://mirror-ubc.debian.org/debian/ unstable/main libpaper-utils kfreebsd-i386 1.1.24+nmu2 [18.1 kB]
+Get:88 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3-dev kfreebsd-i386 1:8.31-2 [351 kB]
+Get:89 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g-dev kfreebsd-i386 1:1.2.8.dfsg-1 [215 kB]
+Get:90 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-dev kfreebsd-i386 1.2.49-4 [266 kB]
+Get:91 http://mirror-ubc.debian.org/debian/ unstable/main libreadline6-dev kfreebsd-i386 6.2+dfsg-0.1 [177 kB]
+Get:92 http://mirror-ubc.debian.org/debian/ unstable/main libreadline-dev kfreebsd-i386 6.2+dfsg-0.1 [900 B]
+Get:93 http://mirror-ubc.debian.org/debian/ unstable/main zip kfreebsd-i386 3.0-7 [329 kB]
+Get:94 http://mirror-ubc.debian.org/debian/ unstable/main unzip kfreebsd-i386 6.0-9 [187 kB]
+Get:95 http://mirror-ubc.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:96 http://mirror-ubc.debian.org/debian/ unstable/main tcl8.5 kfreebsd-i386 8.5.11-2 [1634 kB]
+Get:97 http://mirror-ubc.debian.org/debian/ unstable/main tk8.5 kfreebsd-i386 8.5.11-2 [1185 kB]
+Get:98 http://mirror-ubc.debian.org/debian/ unstable/main r-base-core kfreebsd-i386 3.0.0-2 [21.2 MB]
+Get:99 http://mirror-ubc.debian.org/debian/ unstable/main r-base-dev all 3.0.0-2 [3900 B]
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 72 newly installed, 0 to remove and 9 not upgraded.
-Need to get 0 B/54.9 MB of archives.
-After this operation, 113 MB of additional disk space will be used.
+Fetched 82.3 MB in 8s (9285 kB/s)
+(Reading database ... 11286 files and directories currently installed.)
+Preparing to replace libc0.1-dev:kfreebsd-i386 2.13-38 (using .../libc0.1-dev_2.17-3_kfreebsd-i386.deb) ...
+Unpacking replacement libc0.1-dev:kfreebsd-i386 ...
+Preparing to replace libc-dev-bin 2.13-38 (using .../libc-dev-bin_2.17-3_kfreebsd-i386.deb) ...
+Unpacking replacement libc-dev-bin ...
+Preparing to replace libgomp1:kfreebsd-i386 4.8.0-6 (using .../libgomp1_4.8.0-7_kfreebsd-i386.deb) ...
+Unpacking replacement libgomp1:kfreebsd-i386 ...
+Preparing to replace gcc-4.8-base:kfreebsd-i386 4.8.0-6 (using .../gcc-4.8-base_4.8.0-7_kfreebsd-i386.deb) ...
+Unpacking replacement gcc-4.8-base:kfreebsd-i386 ...
+Setting up gcc-4.8-base:kfreebsd-i386 (4.8.0-7) ...
+(Reading database ... 11293 files and directories currently installed.)
+Preparing to replace libgcc1:kfreebsd-i386 1:4.8.0-6 (using .../libgcc1_1%3a4.8.0-7_kfreebsd-i386.deb) ...
+Unpacking replacement libgcc1:kfreebsd-i386 ...
+Setting up libgcc1:kfreebsd-i386 (1:4.8.0-7) ...
+(Reading database ... 11293 files and directories currently installed.)
+Preparing to replace libquadmath0:kfreebsd-i386 4.8.0-6 (using .../libquadmath0_4.8.0-7_kfreebsd-i386.deb) ...
+Unpacking replacement libquadmath0:kfreebsd-i386 ...
+Preparing to replace libc0.1:kfreebsd-i386 2.13-38 (using .../libc0.1_2.17-3_kfreebsd-i386.deb) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Unpacking replacement libc0.1:kfreebsd-i386 ...
+Setting up libc0.1:kfreebsd-i386 (2.17-3) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Nothing to restart.
+(Reading database ... 11299 files and directories currently installed.)
+Preparing to replace libstdc++6:kfreebsd-i386 4.8.0-6 (using .../libstdc++6_4.8.0-7_kfreebsd-i386.deb) ...
+Unpacking replacement libstdc++6:kfreebsd-i386 ...
+Setting up libstdc++6:kfreebsd-i386 (4.8.0-7) ...
+(Reading database ... 11299 files and directories currently installed.)
+Preparing to replace libtinfo5:kfreebsd-i386 5.9-10 (using .../libtinfo5_5.9+20130504-1_kfreebsd-i386.deb) ...
+Unpacking replacement libtinfo5:kfreebsd-i386 ...
+Setting up libtinfo5:kfreebsd-i386 (5.9+20130504-1) ...
+(Reading database ... 11299 files and directories currently installed.)
+Preparing to replace libncurses5:kfreebsd-i386 5.9-10 (using .../libncurses5_5.9+20130504-1_kfreebsd-i386.deb) ...
+Unpacking replacement libncurses5:kfreebsd-i386 ...
+Setting up libncurses5:kfreebsd-i386 (5.9+20130504-1) ...
+(Reading database ... 11299 files and directories currently installed.)
+Preparing to replace ncurses-bin 5.9-10 (using .../ncurses-bin_5.9+20130504-1_kfreebsd-i386.deb) ...
+Unpacking replacement ncurses-bin ...
+Setting up ncurses-bin (5.9+20130504-1) ...
Selecting previously unselected package libpipeline1:kfreebsd-i386.
-(Reading database ... 11655 files and directories currently installed.)
-Unpacking libpipeline1:kfreebsd-i386 (from .../libpipeline1_1.2.1-1_kfreebsd-i386.deb) ...
+(Reading database ... 11297 files and directories currently installed.)
+Unpacking libpipeline1:kfreebsd-i386 (from .../libpipeline1_1.2.3-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.22.2-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_kfreebsd-i386.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.3-6_kfreebsd-i386.deb) ...
+Selecting previously unselected package libasprintf0c2:kfreebsd-i386.
+Unpacking libasprintf0c2:kfreebsd-i386 (from .../libasprintf0c2_0.18.1.1-10_kfreebsd-i386.deb) ...
Selecting previously unselected package libmagic1:kfreebsd-i386.
-Unpacking libmagic1:kfreebsd-i386 (from .../libmagic1_5.11-1_kfreebsd-i386.deb) ...
+Unpacking libmagic1:kfreebsd-i386 (from .../libmagic1_1%3a5.14-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libpcre3:kfreebsd-i386.
+Unpacking libpcre3:kfreebsd-i386 (from .../libpcre3_1%3a8.31-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libxml2:kfreebsd-i386.
+Unpacking libxml2:kfreebsd-i386 (from .../libxml2_2.8.0+dfsg1-7+nmu1_kfreebsd-i386.deb) ...
Selecting previously unselected package libfreetype6:kfreebsd-i386.
-Unpacking libfreetype6:kfreebsd-i386 (from .../libfreetype6_2.4.9-1_kfreebsd-i386.deb) ...
+Unpacking libfreetype6:kfreebsd-i386 (from .../libfreetype6_2.4.9-1.1_kfreebsd-i386.deb) ...
+Selecting previously unselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ...
+Moving old data out of the way
+Selecting previously unselected package fonts-dejavu-core.
+Unpacking fonts-dejavu-core (from .../fonts-dejavu-core_2.33+svn2514-3_all.deb) ...
Selecting previously unselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33+svn2514-3_all.deb) ...
Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ...
Selecting previously unselected package libfontconfig1:kfreebsd-i386.
-Unpacking libfontconfig1:kfreebsd-i386 (from .../libfontconfig1_2.8.0-3.1_kfreebsd-i386.deb) ...
+Unpacking libfontconfig1:kfreebsd-i386 (from .../libfontconfig1_2.9.0-7.1_kfreebsd-i386.deb) ...
Selecting previously unselected package libpixman-1-0:kfreebsd-i386.
-Unpacking libpixman-1-0:kfreebsd-i386 (from .../libpixman-1-0_0.24.4-1_kfreebsd-i386.deb) ...
+Unpacking libpixman-1-0:kfreebsd-i386 (from .../libpixman-1-0_0.26.0-4_kfreebsd-i386.deb) ...
+Selecting previously unselected package libpng12-0:kfreebsd-i386.
+Unpacking libpng12-0:kfreebsd-i386 (from .../libpng12-0_1.2.49-4_kfreebsd-i386.deb) ...
Selecting previously unselected package libxau6:kfreebsd-i386.
Unpacking libxau6:kfreebsd-i386 (from .../libxau6_1%3a1.0.7-1_kfreebsd-i386.deb) ...
Selecting previously unselected package libxdmcp6:kfreebsd-i386.
-Unpacking libxdmcp6:kfreebsd-i386 (from .../libxdmcp6_1%3a1.1.0-4_kfreebsd-i386.deb) ...
+Unpacking libxdmcp6:kfreebsd-i386 (from .../libxdmcp6_1%3a1.1.1-1_kfreebsd-i386.deb) ...
Selecting previously unselected package libxcb1:kfreebsd-i386.
-Unpacking libxcb1:kfreebsd-i386 (from .../libxcb1_1.8.1-1_kfreebsd-i386.deb) ...
+Unpacking libxcb1:kfreebsd-i386 (from .../libxcb1_1.8.1-2_kfreebsd-i386.deb) ...
Selecting previously unselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
+Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ...
Selecting previously unselected package libx11-6:kfreebsd-i386.
-Unpacking libx11-6:kfreebsd-i386 (from .../libx11-6_2%3a1.4.4-4_kfreebsd-i386.deb) ...
+Unpacking libx11-6:kfreebsd-i386 (from .../libx11-6_2%3a1.5.0-1_kfreebsd-i386.deb) ...
Selecting previously unselected package libxcb-render0:kfreebsd-i386.
-Unpacking libxcb-render0:kfreebsd-i386 (from .../libxcb-render0_1.8.1-1_kfreebsd-i386.deb) ...
+Unpacking libxcb-render0:kfreebsd-i386 (from .../libxcb-render0_1.8.1-2_kfreebsd-i386.deb) ...
Selecting previously unselected package libxcb-shm0:kfreebsd-i386.
-Unpacking libxcb-shm0:kfreebsd-i386 (from .../libxcb-shm0_1.8.1-1_kfreebsd-i386.deb) ...
+Unpacking libxcb-shm0:kfreebsd-i386 (from .../libxcb-shm0_1.8.1-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libxext6:kfreebsd-i386.
+Unpacking libxext6:kfreebsd-i386 (from .../libxext6_2%3a1.3.1-2_kfreebsd-i386.deb) ...
Selecting previously unselected package libxrender1:kfreebsd-i386.
-Unpacking libxrender1:kfreebsd-i386 (from .../libxrender1_1%3a0.9.6-2_kfreebsd-i386.deb) ...
+Unpacking libxrender1:kfreebsd-i386 (from .../libxrender1_1%3a0.9.7-1_kfreebsd-i386.deb) ...
Selecting previously unselected package libcairo2:kfreebsd-i386.
-Unpacking libcairo2:kfreebsd-i386 (from .../libcairo2_1.12.0-2_kfreebsd-i386.deb) ...
-Selecting previously unselected package libffi5:kfreebsd-i386.
-Unpacking libffi5:kfreebsd-i386 (from .../libffi5_3.0.10-3_kfreebsd-i386.deb) ...
+Unpacking libcairo2:kfreebsd-i386 (from .../libcairo2_1.12.14-4_kfreebsd-i386.deb) ...
+Selecting previously unselected package libffi6:kfreebsd-i386.
+Unpacking libffi6:kfreebsd-i386 (from .../libffi6_3.0.13-4_kfreebsd-i386.deb) ...
Selecting previously unselected package libglib2.0-0:kfreebsd-i386.
-Unpacking libglib2.0-0:kfreebsd-i386 (from .../libglib2.0-0_2.32.0-4_kfreebsd-i386.deb) ...
-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-7_kfreebsd-i386.deb) ...
+Unpacking libglib2.0-0:kfreebsd-i386 (from .../libglib2.0-0_2.36.1-2build1_kfreebsd-i386.deb) ...
Selecting previously unselected package libcroco3:kfreebsd-i386.
-Unpacking libcroco3:kfreebsd-i386 (from .../libcroco3_0.6.5-1_kfreebsd-i386.deb) ...
+Unpacking libcroco3:kfreebsd-i386 (from .../libcroco3_0.6.8-2_kfreebsd-i386.deb) ...
Selecting previously unselected package libdatrie1:kfreebsd-i386.
-Unpacking libdatrie1:kfreebsd-i386 (from .../libdatrie1_0.2.5-3_kfreebsd-i386.deb) ...
+Unpacking libdatrie1:kfreebsd-i386 (from .../libdatrie1_0.2.6-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libunistring0:kfreebsd-i386.
+Unpacking libunistring0:kfreebsd-i386 (from .../libunistring0_0.9.3-5_kfreebsd-i386.deb) ...
+Selecting previously unselected package libgettextpo0:kfreebsd-i386.
+Unpacking libgettextpo0:kfreebsd-i386 (from .../libgettextpo0_0.18.1.1-10_kfreebsd-i386.deb) ...
Selecting previously unselected package libgfortran3:kfreebsd-i386.
-Unpacking libgfortran3:kfreebsd-i386 (from .../libgfortran3_4.7.0-3_kfreebsd-i386.deb) ...
+Unpacking libgfortran3:kfreebsd-i386 (from .../libgfortran3_4.8.0-7_kfreebsd-i386.deb) ...
Selecting previously unselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
+Unpacking x11-common (from .../x11-common_1%3a7.7+3_all.deb) ...
Selecting previously unselected package libice6:kfreebsd-i386.
Unpacking libice6:kfreebsd-i386 (from .../libice6_2%3a1.0.8-2_kfreebsd-i386.deb) ...
Selecting previously unselected package libjpeg8:kfreebsd-i386.
Unpacking libjpeg8:kfreebsd-i386 (from .../libjpeg8_8d-1_kfreebsd-i386.deb) ...
Selecting previously unselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.17-1_all.deb) ...
+Unpacking libthai-data (from .../libthai-data_0.1.19-2_all.deb) ...
Selecting previously unselected package libthai0:kfreebsd-i386.
-Unpacking libthai0:kfreebsd-i386 (from .../libthai0_0.1.17-1_kfreebsd-i386.deb) ...
+Unpacking libthai0:kfreebsd-i386 (from .../libthai0_0.1.19-2_kfreebsd-i386.deb) ...
Selecting previously unselected package libxft2:kfreebsd-i386.
-Unpacking libxft2:kfreebsd-i386 (from .../libxft2_2.2.0-3_kfreebsd-i386.deb) ...
+Unpacking libxft2:kfreebsd-i386 (from .../libxft2_2.3.1-1_kfreebsd-i386.deb) ...
Selecting previously unselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-3.1_kfreebsd-i386.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_kfreebsd-i386.deb) ...
Selecting previously unselected package libpango1.0-0:kfreebsd-i386.
Unpacking libpango1.0-0:kfreebsd-i386 (from .../libpango1.0-0_1.30.0-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libpaper1:kfreebsd-i386.
+Unpacking libpaper1:kfreebsd-i386 (from .../libpaper1_1.1.24+nmu2_kfreebsd-i386.deb) ...
Selecting previously unselected package libpcrecpp0:kfreebsd-i386.
-Unpacking libpcrecpp0:kfreebsd-i386 (from .../libpcrecpp0_1%3a8.30-4_kfreebsd-i386.deb) ...
+Unpacking libpcrecpp0:kfreebsd-i386 (from .../libpcrecpp0_1%3a8.31-2_kfreebsd-i386.deb) ...
Selecting previously unselected package libsm6:kfreebsd-i386.
Unpacking libsm6:kfreebsd-i386 (from .../libsm6_2%3a1.2.1-2_kfreebsd-i386.deb) ...
-Selecting previously unselected package libtiff4:kfreebsd-i386.
-Unpacking libtiff4:kfreebsd-i386 (from .../libtiff4_3.9.6-2_kfreebsd-i386.deb) ...
-Selecting previously unselected package libunistring0:kfreebsd-i386.
-Unpacking libunistring0:kfreebsd-i386 (from .../libunistring0_0.9.3-5_kfreebsd-i386.deb) ...
-Selecting previously unselected package libxext6:kfreebsd-i386.
-Unpacking libxext6:kfreebsd-i386 (from .../libxext6_2%3a1.3.0-3_kfreebsd-i386.deb) ...
+Selecting previously unselected package libjbig0:kfreebsd-i386.
+Unpacking libjbig0:kfreebsd-i386 (from .../libjbig0_2.0-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libtiff5:kfreebsd-i386.
+Unpacking libtiff5:kfreebsd-i386 (from .../libtiff5_4.0.2-6_kfreebsd-i386.deb) ...
Selecting previously unselected package libxss1:kfreebsd-i386.
-Unpacking libxss1:kfreebsd-i386 (from .../libxss1_1%3a1.2.1-2_kfreebsd-i386.deb) ...
+Unpacking libxss1:kfreebsd-i386 (from .../libxss1_1%3a1.2.2-1_kfreebsd-i386.deb) ...
Selecting previously unselected package libxt6:kfreebsd-i386.
-Unpacking libxt6:kfreebsd-i386 (from .../libxt6_1%3a1.1.1-2_kfreebsd-i386.deb) ...
-Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-7_kfreebsd-i386.deb) ...
-Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.1-2_kfreebsd-i386.deb) ...
+Unpacking libxt6:kfreebsd-i386 (from .../libxt6_1%3a1.1.3-1_kfreebsd-i386.deb) ...
+Preparing to replace g++-4.7 4.7.3-3 (using .../g++-4.7_4.7.3-4_kfreebsd-i386.deb) ...
+Unpacking replacement g++-4.7 ...
+Preparing to replace gcc-4.7 4.7.3-3 (using .../gcc-4.7_4.7.3-4_kfreebsd-i386.deb) ...
+Unpacking replacement gcc-4.7 ...
+Preparing to replace libstdc++6-4.7-dev:kfreebsd-i386 4.7.3-3 (using .../libstdc++6-4.7-dev_4.7.3-4_kfreebsd-i386.deb) ...
+Unpacking replacement libstdc++6-4.7-dev:kfreebsd-i386 ...
+Preparing to replace libgcc-4.7-dev:kfreebsd-i386 4.7.3-3 (using .../libgcc-4.7-dev_4.7.3-4_kfreebsd-i386.deb) ...
+Unpacking replacement libgcc-4.7-dev:kfreebsd-i386 ...
+Preparing to replace cpp-4.7 4.7.3-3 (using .../cpp-4.7_4.7.3-4_kfreebsd-i386.deb) ...
+Unpacking replacement cpp-4.7 ...
+Preparing to replace gcc-4.7-base:kfreebsd-i386 4.7.3-3 (using .../gcc-4.7-base_4.7.3-4_kfreebsd-i386.deb) ...
+Unpacking replacement gcc-4.7-base:kfreebsd-i386 ...
Selecting previously unselected package file.
-Unpacking file (from .../file_5.11-1_kfreebsd-i386.deb) ...
+Unpacking file (from .../file_1%3a5.14-1_kfreebsd-i386.deb) ...
Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_kfreebsd-i386.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_kfreebsd-i386.deb) ...
Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.109_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_kfreebsd-i386.deb) ...
+Selecting previously unselected package libasprintf-dev:kfreebsd-i386.
+Unpacking libasprintf-dev:kfreebsd-i386 (from .../libasprintf-dev_0.18.1.1-10_kfreebsd-i386.deb) ...
+Selecting previously unselected package libgettextpo-dev:kfreebsd-i386.
+Unpacking libgettextpo-dev:kfreebsd-i386 (from .../libgettextpo-dev_0.18.1.1-10_kfreebsd-i386.deb) ...
Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-5_kfreebsd-i386.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-10_kfreebsd-i386.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120410_all.deb) ...
-Selecting previously unselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.35_all.deb) ...
-Selecting previously unselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-1_kfreebsd-i386.deb) ...
+Unpacking debhelper (from .../debhelper_9.20130516_all.deb) ...
+Selecting previously unselected package libgfortran-4.7-dev:kfreebsd-i386.
+Unpacking libgfortran-4.7-dev:kfreebsd-i386 (from .../libgfortran-4.7-dev_4.7.3-4_kfreebsd-i386.deb) ...
+Selecting previously unselected package gfortran-4.7.
+Unpacking gfortran-4.7 (from .../gfortran-4.7_4.7.3-4_kfreebsd-i386.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.3-4_kfreebsd-i386.deb) ...
-Selecting previously unselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_kfreebsd-i386.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.7.2-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libblas3.
+Unpacking libblas3 (from .../libblas3_1.2.20110419-5_kfreebsd-i386.deb) ...
Selecting previously unselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_kfreebsd-i386.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_kfreebsd-i386.deb) ...
Selecting previously unselected package libbz2-dev:kfreebsd-i386.
-Unpacking libbz2-dev:kfreebsd-i386 (from .../libbz2-dev_1.0.6-1_kfreebsd-i386.deb) ...
+Unpacking libbz2-dev:kfreebsd-i386 (from .../libbz2-dev_1.0.6-4_kfreebsd-i386.deb) ...
Selecting previously unselected package libjpeg8-dev:kfreebsd-i386.
Unpacking libjpeg8-dev:kfreebsd-i386 (from .../libjpeg8-dev_8d-1_kfreebsd-i386.deb) ...
-Selecting previously unselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package liblapack3.
+Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_kfreebsd-i386.deb) ...
Selecting previously unselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_kfreebsd-i386.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.4.2+dfsg-1_kfreebsd-i386.deb) ...
Selecting previously unselected package libtinfo-dev:kfreebsd-i386.
-Unpacking libtinfo-dev:kfreebsd-i386 (from .../libtinfo-dev_5.9-6_kfreebsd-i386.deb) ...
-Selecting previously unselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-6_kfreebsd-i386.deb) ...
-Selecting previously unselected package libpaper1.
-Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_kfreebsd-i386.deb) ...
+Unpacking libtinfo-dev:kfreebsd-i386 (from .../libtinfo-dev_5.9+20130504-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libncurses5-dev:kfreebsd-i386.
+Unpacking libncurses5-dev:kfreebsd-i386 (from .../libncurses5-dev_5.9+20130504-1_kfreebsd-i386.deb) ...
Selecting previously unselected package libpaper-utils.
-Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_kfreebsd-i386.deb) ...
-Selecting previously unselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_1%3a8.30-4_kfreebsd-i386.deb) ...
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libpcre3-dev:kfreebsd-i386.
+Unpacking libpcre3-dev:kfreebsd-i386 (from .../libpcre3-dev_1%3a8.31-2_kfreebsd-i386.deb) ...
Selecting previously unselected package zlib1g-dev:kfreebsd-i386.
-Unpacking zlib1g-dev:kfreebsd-i386 (from .../zlib1g-dev_1%3a1.2.6.dfsg-2_kfreebsd-i386.deb) ...
+Unpacking zlib1g-dev:kfreebsd-i386 (from .../zlib1g-dev_1%3a1.2.8.dfsg-1_kfreebsd-i386.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-1_kfreebsd-i386.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_kfreebsd-i386.deb) ...
Selecting previously unselected package libreadline6-dev:kfreebsd-i386.
-Unpacking libreadline6-dev:kfreebsd-i386 (from .../libreadline6-dev_6.2-8_kfreebsd-i386.deb) ...
+Unpacking libreadline6-dev:kfreebsd-i386 (from .../libreadline6-dev_6.2+dfsg-0.1_kfreebsd-i386.deb) ...
Selecting previously unselected package libreadline-dev:kfreebsd-i386.
-Unpacking libreadline-dev:kfreebsd-i386 (from .../libreadline-dev_6.2-8_kfreebsd-i386.deb) ...
+Unpacking libreadline-dev:kfreebsd-i386 (from .../libreadline-dev_6.2+dfsg-0.1_kfreebsd-i386.deb) ...
Selecting previously unselected package zip.
-Unpacking zip (from .../zip_3.0-4_kfreebsd-i386.deb) ...
+Unpacking zip (from .../zip_3.0-7_kfreebsd-i386.deb) ...
Selecting previously unselected package unzip.
-Unpacking unzip (from .../unzip_6.0-6_kfreebsd-i386.deb) ...
+Unpacking unzip (from .../unzip_6.0-9_kfreebsd-i386.deb) ...
Selecting previously unselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-6_all.deb) ...
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
Selecting previously unselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_kfreebsd-i386.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_kfreebsd-i386.deb) ...
Selecting previously unselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.11-1_kfreebsd-i386.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_kfreebsd-i386.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.15.0-1_kfreebsd-i386.deb) ...
+Unpacking r-base-core (from .../r-base-core_3.0.0-2_kfreebsd-i386.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.15.0-1_all.deb) ...
-Setting up libpipeline1:kfreebsd-i386 (1.2.1-1) ...
-Setting up libmagic1:kfreebsd-i386 (5.11-1) ...
-Setting up libfreetype6:kfreebsd-i386 (2.4.9-1) ...
-Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3.1) ...
-Setting up libfontconfig1:kfreebsd-i386 (2.8.0-3.1) ...
-Setting up libpixman-1-0:kfreebsd-i386 (0.24.4-1) ...
+Unpacking r-base-dev (from .../r-base-dev_3.0.0-2_all.deb) ...
+Setting up libc-dev-bin (2.17-3) ...
+Setting up libc0.1-dev:kfreebsd-i386 (2.17-3) ...
+Setting up libgomp1:kfreebsd-i386 (4.8.0-7) ...
+Setting up libquadmath0:kfreebsd-i386 (4.8.0-7) ...
+Setting up libpipeline1:kfreebsd-i386 (1.2.3-1) ...
+Setting up groff-base (1.22.2-2) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.3-6) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:kfreebsd-i386 (0.18.1.1-10) ...
+Setting up libmagic1:kfreebsd-i386 (1:5.14-1) ...
+Setting up libpcre3:kfreebsd-i386 (1:8.31-2) ...
+Setting up libxml2:kfreebsd-i386 (2.8.0+dfsg1-7+nmu1) ...
+Setting up libfreetype6:kfreebsd-i386 (2.4.9-1.1) ...
+Setting up ucf (3.0025+nmu3) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:kfreebsd-i386 (2.9.0-7.1) ...
+Setting up libpixman-1-0:kfreebsd-i386 (0.26.0-4) ...
+Setting up libpng12-0:kfreebsd-i386 (1.2.49-4) ...
Setting up libxau6:kfreebsd-i386 (1:1.0.7-1) ...
-Setting up libxdmcp6:kfreebsd-i386 (1:1.1.0-4) ...
-Setting up libxcb1:kfreebsd-i386 (1.8.1-1) ...
-Setting up libx11-data (2:1.4.4-4) ...
-Setting up libx11-6:kfreebsd-i386 (2:1.4.4-4) ...
-Setting up libxcb-render0:kfreebsd-i386 (1.8.1-1) ...
-Setting up libxcb-shm0:kfreebsd-i386 (1.8.1-1) ...
-Setting up libxrender1:kfreebsd-i386 (1:0.9.6-2) ...
-Setting up libcairo2:kfreebsd-i386 (1.12.0-2) ...
-Setting up libffi5:kfreebsd-i386 (3.0.10-3) ...
-Setting up libglib2.0-0:kfreebsd-i386 (2.32.0-4) ...
+Setting up libxdmcp6:kfreebsd-i386 (1:1.1.1-1) ...
+Setting up libxcb1:kfreebsd-i386 (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:kfreebsd-i386 (2:1.5.0-1) ...
+Setting up libxcb-render0:kfreebsd-i386 (1.8.1-2) ...
+Setting up libxcb-shm0:kfreebsd-i386 (1.8.1-2) ...
+Setting up libxext6:kfreebsd-i386 (2:1.3.1-2) ...
+Setting up libxrender1:kfreebsd-i386 (1:0.9.7-1) ...
+Setting up libcairo2:kfreebsd-i386 (1.12.14-4) ...
+Setting up libffi6:kfreebsd-i386 (3.0.13-4) ...
+Setting up libglib2.0-0:kfreebsd-i386 (2.36.1-2build1) ...
No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-7) ...
-Setting up libcroco3:kfreebsd-i386 (0.6.5-1) ...
-Setting up libdatrie1:kfreebsd-i386 (0.2.5-3) ...
-Setting up libgfortran3:kfreebsd-i386 (4.7.0-3) ...
-Setting up x11-common (1:7.6+12) ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libcroco3:kfreebsd-i386 (0.6.8-2) ...
+Setting up libdatrie1:kfreebsd-i386 (0.2.6-2) ...
+Setting up libunistring0:kfreebsd-i386 (0.9.3-5) ...
+Setting up libgettextpo0:kfreebsd-i386 (0.18.1.1-10) ...
+Setting up libgfortran3:kfreebsd-i386 (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
+Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix.
Setting up libice6:kfreebsd-i386 (2:1.0.8-2) ...
Setting up libjpeg8:kfreebsd-i386 (8d-1) ...
-Setting up libthai-data (0.1.17-1) ...
-Setting up libthai0:kfreebsd-i386 (0.1.17-1) ...
-Setting up libxft2:kfreebsd-i386 (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3.1) ...
-Cleaning up old fontconfig caches... done.
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:kfreebsd-i386 (0.1.19-2) ...
+Setting up libxft2:kfreebsd-i386 (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
Regenerating fonts cache... done.
Setting up libpango1.0-0:kfreebsd-i386 (1.30.0-1) ...
-Setting up libpcrecpp0:kfreebsd-i386 (1:8.30-4) ...
+Setting up libpaper1:kfreebsd-i386 (1.1.24+nmu2) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpcrecpp0:kfreebsd-i386 (1:8.31-2) ...
Setting up libsm6:kfreebsd-i386 (2:1.2.1-2) ...
-Setting up libtiff4:kfreebsd-i386 (3.9.6-2) ...
-Setting up libunistring0:kfreebsd-i386 (0.9.3-5) ...
-Setting up libxext6:kfreebsd-i386 (2:1.3.0-3) ...
-Setting up libxss1:kfreebsd-i386 (1:1.2.1-2) ...
-Setting up libxt6:kfreebsd-i386 (1:1.1.1-2) ...
-Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
-Building database of manual pages ...
-Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.109) ...
+Setting up libjbig0:kfreebsd-i386 (2.0-2) ...
+Setting up libtiff5:kfreebsd-i386 (4.0.2-6) ...
+Setting up libxss1:kfreebsd-i386 (1:1.2.2-1) ...
+Setting up libxt6:kfreebsd-i386 (1:1.1.3-1) ...
+Setting up gcc-4.7-base:kfreebsd-i386 (4.7.3-4) ...
+Setting up cpp-4.7 (4.7.3-4) ...
+Setting up libgcc-4.7-dev:kfreebsd-i386 (4.7.3-4) ...
+Setting up gcc-4.7 (4.7.3-4) ...
+Setting up libstdc++6-4.7-dev:kfreebsd-i386 (4.7.3-4) ...
+Setting up g++-4.7 (4.7.3-4) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-5) ...
+Setting up libasprintf-dev:kfreebsd-i386 (0.18.1.1-10) ...
+Setting up libgettextpo-dev:kfreebsd-i386 (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120410) ...
-Setting up dpatch (2.0.35) ...
-Setting up gfortran-4.6 (4.6.3-1) ...
-Setting up gfortran (4:4.6.3-4) ...
-update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev:kfreebsd-i386 (1.0.6-1) ...
+Setting up debhelper (9.20130516) ...
+Setting up libgfortran-4.7-dev:kfreebsd-i386 (4.7.3-4) ...
+Setting up gfortran-4.7 (4.7.3-4) ...
+Setting up gfortran (4:4.7.2-1) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:kfreebsd-i386 (1.0.6-4) ...
Setting up libjpeg8-dev:kfreebsd-i386 (8d-1) ...
-Setting up liblapack3gf (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev:kfreebsd-i386 (5.9-6) ...
-Setting up libncurses5-dev (5.9-6) ...
-Setting up libpaper1 (1.1.24+nmu1) ...
-
-Creating config file /etc/papersize with new version
-Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcre3-dev (1:8.30-4) ...
-Setting up zlib1g-dev:kfreebsd-i386 (1:1.2.6.dfsg-2) ...
-Setting up libpng12-dev (1.2.49-1) ...
-Setting up libreadline6-dev:kfreebsd-i386 (6.2-8) ...
-Setting up libreadline-dev:kfreebsd-i386 (6.2-8) ...
-Setting up zip (3.0-4) ...
-Setting up unzip (6.0-6) ...
-Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
-Setting up tcl8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.15.0-1) ...
-Setting R_PAPERSIZE_USER default to 'a4'
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:kfreebsd-i386 (5.9+20130504-1) ...
+Setting up libncurses5-dev:kfreebsd-i386 (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:kfreebsd-i386 (1:8.31-2) ...
+Setting up zlib1g-dev:kfreebsd-i386 (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:kfreebsd-i386 (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:kfreebsd-i386 (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.0-2) ...
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.15.0-1) ...
+Setting up r-base-dev (3.0.0-2) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 13 not upgraded.
Checking correctness of dependencies...
Kernel: GNU/kFreeBSD 8.1-1-686-smp kfreebsd-i386 (i686)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 kfreebsd-kernel-headers_0.78 libc0.1-dev_2.13-27 libstdc++6_4.7.0-3 libstdc++6-4.6-dev_4.6.3-1
-Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.109 coreutils_8.13-3.1 cpp_4:4.6.3-4 cpp-4.6_4.6.3-1 dash_0.5.7-3 debconf_1.5.42 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_9.20120410 debian-archive-keyring_2010.08.28 debianutils_4.2.2 diffutils_1:3.2-2 dpatch_2.0.35 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.2-1 file_5.11-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 freebsd-utils_9.0+ds1-1 g++_4:4.6.3-4 g++-4.6_4.6.3-1 gcc_4:4.6.3-4 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-1 gcc-4.6-base_4.6.3-1 gcc-4.7-base_4.7.0-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.3-4 gfortran-4.6_4.6.3-1 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.10-1 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 kbdcontrol_9.0+ds1-1 kfreebsd-kernel-headers_0.78 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-4 libbsd0_0.3.0-2 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-27 libc-dev-bin_2.13-27 libc0.1_2.13-27 libc0.1-dev_2.13-27 libcairo2_1.12.0-2 libcam6_9.0+ds1-2 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libexpat1_2.1.0-1 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-1+b1 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-3 libgdbm3_1.8.3-10 libgeom1_9.0+ds1-2 libgfortran3_4.7.0-3 libglib2.0-0_2.32.0-4 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-3 libgssglue1_0.3-4 libice6_2:1.0.8-2 libjail1_9.0+ds1-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 libkiconv4_9.0+ds1-2 libkvm0_9.0+ds1-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-6 libncurses5-dev_5.9-6 libncursesw5_5.9-6 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_1:8.30-4 libpcre3-dev_1:8.30-4 libpcrecpp0_1:8.30-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.49-1 libpng12-dev_1.2.49-1 libprocps0_1:3.3.2-3 libquadmath0_4.7.0-3 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libsbuf6_9.0+ds1-2 libslang2_2.2.4-7 libsm6_2:1.2.1-2 libss2_1.42.2-1 libstdc++6_4.7.0-3 libstdc++6-4.6-dev_4.6.3-1 libswitch-perl_2.16-2 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-6 libtinfo5_5.9-6 libtirpc1_0.2.2-5 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 login_1:4.1.5-1 lsb-base_3.2+Debian31 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-17 multiarch-support_2.13-27 ncurses-base_5.9-4 ncurses-bin_5.9-6 netbase_4.47 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 procps_1:3.3.2-3 psmisc_22.16-1 r-base-core_2.15.0-1 r-base-dev_2.15.0-1 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 type-handling_0.2.23 tzdata_2012b-1 ucf_3.0025+nmu2 unzip_6.0-6 util-linux_2.20.1-4 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.7_4.7.3-4 gcc-4.7_4.7.3-4 kfreebsd-kernel-headers_0.83 libc0.1-dev_2.17-3 libstdc++6_4.8.0-7 libstdc++6-4.7-dev_4.7.3-4
+Package versions: apt_0.9.8 base-files_7.2 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.13-3.3 cpp_4:4.7.2-1 cpp-4.7_4.7.3-4 dash_0.5.7-3 debconf_1.5.50 debconf-i18n_1.5.50 debfoster_2.7-1.2 debhelper_9.20130516 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-1 findutils_4.4.2-5 fontconfig_2.9.0-7.1 fontconfig-config_2.9.0-7.1 fonts-dejavu-core_2.33+svn2514-3 freebsd-utils_9.0+ds1-11 g++_4:4.7.2-1 g++-4.7_4.7.3-4 gcc_4:4.7.2-1 gcc-4.7_4.7.3-4 gcc-4.7-base_4.7.3-4 gcc-4.8-base_4.8.0-7 gettext_0.18.1.1-10 gettext-base_0.18.1.1-10 gfortran_4:4.7.2-1 gfortran-4.7_4.7.3-4 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.14-1 groff-base_1.22.2-2 gzip_1.5-1.1 hostname_3.12 html2text_1.3.2a-15 initscripts_2.88dsf-41 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 kbdcontrol_9.0+ds1-11 kfreebsd-kernel-headers_0.83 libacl1_2.2.51-8 libapt-pkg4.12_0.9.8 libasprintf-dev_0.18.1.1-10 libasprintf0c2_0.18.1.1-10 libattr1_1:2.4.46-8 libblas-dev_1.2.20110419-5 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.3 libbsd0_0.4.2-1 libbz2-1.0_1.0.6-4 libbz2-dev_1.0.6-4 libc-bin_2.13-38 libc-dev-bin_2.17-3 libc0.1_2.17-3 libc0.1-dev_2.17-3 libcairo2_1.12.14-4 libcam6_9.0+ds1-4 libclass-isa-perl_0.36-5 libcloog-ppl1_0.16.1-2 libcomerr2_1.42.5-1.1 libcroco3_0.6.8-2 libdatrie1_0.2.6-2 libdb5.1_5.1.29-5 libdpkg-perl_1.16.10 libexpat1_2.1.0-3 libffi6_3.0.13-4 libfontconfig1_2.9.0-7.1 libfreetype6_2.4.9-1.1 libgc1c2_1:7.1-9.1 libgcc-4.7-dev_4.7.3-4 libgcc1_1:4.8.0-7 libgdbm3_1.8.3-11 libgeom1_9.0+ds1-4 libgettextpo-dev_0.18.1.1-10 libgettextpo0_0.18.1.1-10 libgfortran-4.7-dev_4.7.3-4 libgfortran3_4.8.0-7 libglib2.0-0_2.36.1-2build1 libgmp10_2:5.0.5+dfsg-2 libgmpxx4ldbl_2:5.0.5+dfsg-2 libgomp1_4.8.0-7 libgssglue1_0.4-2 libice6_2:1.0.8-2 libjail1_9.0+ds1-4 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 libkiconv4_9.0+ds1-4 libkvm0_9.0+ds1-4 liblapack-dev_3.4.2+dfsg-1 liblapack3_3.4.2+dfsg-1 liblocale-gettext-perl_1.05-7+b1 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-1 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libncurses5_5.9+20130504-1 libncurses5-dev_5.9+20130504-1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.31-2 libpcre3-dev_1:8.31-2 libpcrecpp0_1:8.31-2 libpipeline1_1.2.3-1 libpixman-1-0_0.26.0-4 libpng12-0_1.2.49-4 libpng12-dev_1.2.49-4 libppl-c4_1:1.0-6 libppl12_1:1.0-6 libquadmath0_4.8.0-7 libreadline-dev_6.2+dfsg-0.1 libreadline6_6.2+dfsg-0.1 libreadline6-dev_6.2+dfsg-0.1 libsbuf6_9.0+ds1-4 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libss2_1.42.5-1.1 libstdc++6_4.8.0-7 libstdc++6-4.7-dev_4.7.3-4 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.19-2 libthai0_0.1.19-2 libtiff5_4.0.2-6 libtimedate-perl_1.2000-1 libtinfo-dev_5.9+20130504-1 libtinfo5_5.9+20130504-1 libtirpc1_0.2.2-5 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23+nmu1 libuuid1_2.20.1-5.3 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-2 libxcb-shm0_1.8.1-2 libxcb1_1.8.1-2 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-7+nmu1 libxrender1_1:0.9.7-1 libxss1_1:1.2.2-1 libxt6_1:1.1.3-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian9 make_3.81-8.2 man-db_2.6.3-6 mawk_1.3.3-17 multiarch-support_2.13-38 ncurses-base_5.9-10 ncurses-bin_5.9+20130504-1 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-21 perl-base_5.14.2-21 perl-modules_5.14.2-21 po-debconf_1.0.16+nmu2 r-base-core_3.0.0-2 r-base-dev_3.0.0-2 readline-common_6.2+dfsg-0.1 sed_4.2.1-10 sensible-utils_0.0.7 sysv-rc_2.88dsf-41 sysvinit_2.88dsf-41 sysvinit-utils_2.88dsf-41 tar_1.26+dfsg-5 tcl8.5_8.5.11-2 tk8.5_8.5.11-2 ttf-dejavu-core_2.33+svn2514-3 tzdata_2013b-2 ucf_3.0025+nmu3 unzip_6.0-9 util-linux_2.20.1-5.3 x11-common_1:7.7+3 xdg-utils_1.1.0~rc1+git20111210-7 xz-utils_5.1.1alpha+20120614-2 zip_3.0-7 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -464,12 +668,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Apr 12 02:45:32 2012 UTC using RSA key ID 2295D502
+gpgv: Signature made Thu May 16 14:46:42 2013 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.12.0~dfsg-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.12.0~dfsg
-dpkg-source: info: unpacking r-bioc-limma_3.12.0~dfsg.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.12.0~dfsg-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.16.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.16.3~dfsg
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg-1.debian.tar.gz
Check disc space
────────────────
@@ -479,27 +683,12 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.12.0~dfsg-1
- dpkg-source --before-build r-bioc-limma-3.12.0~dfsg
+dpkg-buildpackage: source version 3.16.3~dfsg-1
+ dpkg-source --before-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: host architecture kfreebsd-i386
fakeroot debian/rules clean
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
-/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-i386-oa030Z/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-i386-oa030Z/r-bioc-limma-3.12.0~dfsg'
-if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "reverse-patches" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-for dir in debian/patches ; do \
- rm -f $dir/*.log ; \
- done
dh_clean
rm -f debian/r-bioc-limma.substvars
rm -f debian/r-bioc-limma.*.debhelper
@@ -520,26 +709,9 @@ if test -d src; then \
fi
rm -f config.log config.status
debian/rules build-arch
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
-/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-i386-oa030Z/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-i386-oa030Z/r-bioc-limma-3.12.0~dfsg'
-if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-i386-oa030Z/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-i386-oa030Z/r-bioc-limma-3.12.0~dfsg'
fakeroot debian/rules binary-arch
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
@@ -551,26 +723,26 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
install -d debian/r-bioc-limma/usr/lib/R/site-library
-echo "R:Depends=r-base-core (>= 2.15.0-1)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 3.0.0-2)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-i386-oa030Z/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-i386-D30Vqd/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-i386-oa030Z/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-i386-D30Vqd/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-i386-oa030Z/r-bioc-limma-3.12.0~dfsg/src'
-gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c normexp.c -o normexp.o
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-i386-D30Vqd/r-bioc-limma-3.16.3~dfsg/src'
+gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O2 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-i386-oa030Z/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-i386-oa030Z/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-i386-oa030Z/r-bioc-limma-3.12.0~dfsg/src'
-installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-i386-oa030Z/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-i386-D30Vqd/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-i386-D30Vqd/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-i386-D30Vqd/r-bioc-limma-3.16.3~dfsg/src'
+installing to /build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-i386-D30Vqd/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -578,22 +750,27 @@ installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-i386-oa030Z/r-bi
*** installing help indices
** building package indices
** installing vignettes
- 'limma.Rnw'
** testing if installed package can be loaded
-
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-i386-oa030Z/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-i386-oa030Z/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-i386-oa030Z/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-i386-D30Vqd/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-i386-D30Vqd/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-i386-D30Vqd/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-i386-oa030Z/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-i386-D30Vqd/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-i386-oa030Z/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-i386-D30Vqd/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/CITATION
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/doc/*
dh_installdocs -pr-bioc-limma
install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-i386-D30Vqd/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/doc/r-bioc-limma \;
+ cp -a debian/README.test debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ chown -R 0:0 debian/r-bioc-limma/usr/share/doc
+ chmod -R go=rX debian/r-bioc-limma/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-limma/usr/share/doc
install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
@@ -625,9 +802,9 @@ dh_strip -pr-bioc-limma
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
cd debian/r-bioc-limma
- chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
- gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
- cd '/build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-i386-oa030Z/r-bioc-limma-3.12.0~dfsg'
+ chmod a-x usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ gzip -9nf usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ cd '/build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-i386-D30Vqd/r-bioc-limma-3.16.3~dfsg'
dh_fixperms -pr-bioc-limma
find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -649,6 +826,7 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
echo misc:Depends= >> debian/r-bioc-limma.substvars
dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-limma.substvars -Pdebian/r-bioc-limma
+dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
chmod 644 debian/r-bioc-limma/DEBIAN/control
chown 0:0 debian/r-bioc-limma/DEBIAN/control
dh_md5sums -pr-bioc-limma
@@ -657,62 +835,79 @@ dh_md5sums -pr-bioc-limma
chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
dpkg-deb --build debian/r-bioc-limma ..
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.12.0~dfsg-1_kfreebsd-i386.deb'.
- dpkg-genchanges -B -mkfreebsd-i386 Build Daemon (field) <buildd_kfreebsd-i386-field at buildd.debian.org> >../r-bioc-limma_3.12.0~dfsg-1_kfreebsd-i386.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.16.3~dfsg-1_kfreebsd-i386.deb'.
+ dpkg-genchanges -B -mkfreebsd-i386 Build Daemon (finzi) <buildd_kfreebsd-i386-finzi at buildd.debian.org> >../r-bioc-limma_3.16.3~dfsg-1_kfreebsd-i386.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.12.0~dfsg
+ dpkg-source --after-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120412-0411
+Build finished at 20130517-1306
-r-bioc-limma_3.12.0~dfsg-1_kfreebsd-i386.changes:
+r-bioc-limma_3.16.3~dfsg-1_kfreebsd-i386.changes:
Format: 1.8
-Date: Thu, 12 Apr 2012 11:40:40 +0900
+Date: Thu, 16 May 2013 15:16:13 +0200
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: kfreebsd-i386
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
Distribution: sid
Urgency: low
-Maintainer: kfreebsd-i386 Build Daemon (field) <buildd_kfreebsd-i386-field at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Maintainer: kfreebsd-i386 Build Daemon (finzi) <buildd_kfreebsd-i386-finzi at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.12.0~dfsg-1) unstable; urgency=low
+ r-bioc-limma (3.16.3~dfsg-1) unstable; urgency=low
.
[ Charles Plessy ]
- 2d3420e Imported Upstream version 3.12.0~dfsg
- 4bbb8e4 Document LIMMA's copyright as a whole.
+ ff8c6db Imported Upstream version 3.12.1~dfsg
+ b4f097e Effective license is GPL-2, without the '+', as R is GPL-2.
.
[ Andreas Tille ]
- 8a61a4c Obtain references from inst/CITATION
+ * Imported new upstream version 3.16.3~dfsg
+ * debian/control
+ - added myself to Uploaders
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - Fake normalisation as it is done by `cme fix dpkg-control`
+ (the command did actually no change - the control file was
+ brought into shape manually)
+ - Removed versioned dependency of r-base-dev
+ * debian/copyright:
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - checked new upstream version and bumped version number
+ - Add years to Copyright fields
+ * debian/rules: Remove executable flag from doc files
+ * debian/source/format: Add explicit source format specification
Checksums-Sha1:
- 43beda643e71262fd0a3144e88beb11a242a7ad7 809482 r-bioc-limma_3.12.0~dfsg-1_kfreebsd-i386.deb
+ cf17083120b2b4a0c3b16210e87d4cec2c80e713 1616702 r-bioc-limma_3.16.3~dfsg-1_kfreebsd-i386.deb
Checksums-Sha256:
- 2a2abb8e90dcbe1c9a613529a778d814ce71c35f373fa8d13f7d76560c7061d0 809482 r-bioc-limma_3.12.0~dfsg-1_kfreebsd-i386.deb
+ bd7dac3f0f52fdff74c2aec203cc74c2f74670408af4a73d170756fe015dd5ad 1616702 r-bioc-limma_3.16.3~dfsg-1_kfreebsd-i386.deb
Files:
- ac98e95cf53fe2fc3c8b6192ee17f5ea 809482 gnu-r optional r-bioc-limma_3.12.0~dfsg-1_kfreebsd-i386.deb
+ acdc959fe934ed477bb9360ad00b9b39 1616702 gnu-r optional r-bioc-limma_3.16.3~dfsg-1_kfreebsd-i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.12.0~dfsg-1_kfreebsd-i386.deb
+r-bioc-limma_3.16.3~dfsg-1_kfreebsd-i386.deb
────────────────────────────────────────────
new debian package, version 2.0.
- size 809482 bytes: control archive= 1542 bytes.
+ size 1616702 bytes: control archive= 1675 bytes.
783 bytes, 16 lines control
- 2290 bytes, 30 lines md5sums
+ 2621 bytes, 34 lines md5sums
Package: r-bioc-limma
- Version: 3.12.0~dfsg-1
+ Version: 3.16.3~dfsg-1
Architecture: kfreebsd-i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 928
- Depends: libc0.1 (>= 2.3), r-base-core (>= 2.15.0-1)
+ Installed-Size: 1785
+ Depends: libc0.1 (>= 2.3), r-base-core (>= 3.0.0-2)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -724,51 +919,56 @@ r-bioc-limma_3.12.0~dfsg-1_kfreebsd-i386.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2012-04-12 04:11 ./
-drwxr-xr-x root/root 0 2012-04-12 04:11 ./usr/
-drwxr-xr-x root/root 0 2012-04-12 04:11 ./usr/lib/
-drwxr-xr-x root/root 0 2012-04-12 04:11 ./usr/lib/R/
-drwxr-xr-x root/root 0 2012-04-12 04:11 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2012-04-12 04:11 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 1901 2012-04-12 04:11 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 967 2012-04-12 04:11 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2012-04-12 04:11 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 1053 2012-04-12 04:11 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 6157 2012-04-12 04:11 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5727 2012-04-12 04:11 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2943 2012-04-12 04:11 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 220 2012-04-12 04:11 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 521 2012-04-12 04:11 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
-drwxr-xr-x root/root 0 2012-04-12 04:11 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 8120 2012-04-12 04:11 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2012-04-12 04:11 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 383 2012-04-12 04:11 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 202050 2012-04-12 04:11 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3822 2012-04-12 04:11 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2012-04-12 04:11 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 91993 2012-04-12 04:11 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 673 2012-04-12 04:11 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 1711 2012-04-12 04:11 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 42743 2012-04-12 04:11 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 1230 2012-04-12 04:11 ./usr/lib/R/site-library/limma/CITATION
--rw-r--r-- root/root 3989 2012-04-12 04:11 ./usr/lib/R/site-library/limma/NEWS.Rd
-drwxr-xr-x root/root 0 2012-04-12 04:11 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1390 2012-04-12 04:11 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 474464 2012-04-12 04:11 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3343 2012-04-12 04:11 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 6317 2012-04-12 04:11 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 2431 2012-04-12 04:11 ./usr/lib/R/site-library/limma/help/aliases.rds
-drwxr-xr-x root/root 0 2012-04-12 04:11 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 35015 2012-04-12 04:11 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2012-04-12 04:11 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 9754 2012-04-12 04:11 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2012-04-12 04:11 ./usr/share/
-drwxr-xr-x root/root 0 2012-04-12 04:11 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-04-12 04:11 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 264 2012-04-12 04:11 ./usr/share/doc/r-bioc-limma/README.Debian
--rw-r--r-- root/root 2457 2012-04-12 04:11 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 27996 2012-03-30 22:32 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 683 2012-04-12 04:11 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2013-05-17 13:06 ./
+drwxr-xr-x root/root 0 2013-05-17 13:06 ./usr/
+drwxr-xr-x root/root 0 2013-05-17 13:05 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-17 13:05 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-17 13:06 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-17 13:06 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 2046 2013-05-17 13:05 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 988 2013-05-17 13:05 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2013-05-17 13:06 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 1065 2013-05-17 13:05 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 6371 2013-05-17 13:06 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5941 2013-05-17 13:06 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 3084 2013-05-17 13:06 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 217 2013-05-17 13:06 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 539 2013-05-17 13:06 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2013-05-17 13:06 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 7892 2013-05-17 13:06 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2013-05-17 13:05 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 1056 2013-05-17 13:05 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 205812 2013-05-17 13:05 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 4106 2013-05-17 13:05 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2013-05-17 13:06 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 102936 2013-05-17 13:05 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 673 2013-05-17 13:05 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 1711 2013-05-17 13:05 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 45597 2013-05-17 13:05 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 806089 2013-05-17 13:05 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 963 2013-05-17 13:05 ./usr/lib/R/site-library/limma/CITATION
+-rw-r--r-- root/root 11214 2013-05-17 13:05 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2013-05-17 13:06 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1415 2013-05-17 13:05 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 495793 2013-05-17 13:06 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3416 2013-05-17 13:06 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6703 2013-05-17 13:06 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2565 2013-05-17 13:06 ./usr/lib/R/site-library/limma/help/aliases.rds
+drwxr-xr-x root/root 0 2013-05-17 13:06 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 37337 2013-05-17 13:06 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2013-05-17 13:06 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 10085 2013-05-17 13:06 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2013-05-17 13:06 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-17 13:06 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-17 13:06 ./usr/share/doc/r-bioc-limma/
+drwxr-xr-x root/root 0 2013-05-17 13:06 ./usr/share/doc/r-bioc-limma/tests/
+-rw-r--r-- root/root 2097 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.R.gz
+-rw-r--r-- root/root 14649 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save.gz
+-rw-r--r-- root/root 437 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.test
+-rw-r--r-- root/root 264 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 2605 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 31097 2013-05-02 00:02 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 1153 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -782,166 +982,26 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-ki-sbuild-1334203643-84709/build/buildd-r-bioc-limma_3.12.0~dfsg-1-kfreebsd-i386-oa030Z
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages will be REMOVED:
- cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config* gettext*
- gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
- intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
- libdatrie1* libffi5* libfontconfig1* libfreetype6* libgfortran3*
- libglib2.0-0* libice6* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf*
- libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1*
- libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0* libpng12-dev*
- libreadline-dev* libreadline6-dev* libsm6* libthai-data* libthai0* libtiff4*
- libtinfo-dev* libunistring0* libx11-6* libx11-data* libxau6* libxcb-render0*
- libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2* libxml2* libxrender1*
- libxss1* libxt6* man-db* po-debconf* r-base-core* r-base-dev* tcl8.5* tk8.5*
- ttf-dejavu-core* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
-0 upgraded, 0 newly installed, 72 to remove and 9 not upgraded.
-After this operation, 113 MB disk space will be freed.
-(Reading database ... 15631 files and directories currently installed.)
-Removing r-base-dev ...
-Removing cdbs ...
-Removing debhelper ...
-Removing dpatch ...
-Purging configuration files for dpatch ...
-Removing file ...
-Removing r-base-core ...
-Purging configuration files for r-base-core ...
-Removing libpango1.0-0:kfreebsd-i386 ...
-Purging configuration files for libpango1.0-0:kfreebsd-i386 ...
-Removing fontconfig ...
-Purging configuration files for fontconfig ...
-Removing tk8.5 ...
-Purging configuration files for tk8.5 ...
-Removing libxft2:kfreebsd-i386 ...
-Purging configuration files for libxft2:kfreebsd-i386 ...
-Removing libcairo2:kfreebsd-i386 ...
-Purging configuration files for libcairo2:kfreebsd-i386 ...
-Removing libfontconfig1:kfreebsd-i386 ...
-Purging configuration files for libfontconfig1:kfreebsd-i386 ...
-Removing fontconfig-config ...
-Purging configuration files for fontconfig-config ...
-Removing po-debconf ...
-Removing intltool-debian ...
-Removing gettext ...
-Removing gettext-base ...
-Removing gfortran ...
-Removing gfortran-4.6 ...
-Removing man-db ...
-Purging configuration files for man-db ...
-Removing groff-base ...
-Purging configuration files for groff-base ...
-Removing html2text ...
-Purging configuration files for html2text ...
-Removing liblapack-dev ...
-Removing libblas-dev ...
-Removing liblapack3gf ...
-Purging configuration files for liblapack3gf ...
-Removing libblas3gf ...
-Purging configuration files for libblas3gf ...
-Removing libbz2-dev:kfreebsd-i386 ...
-Removing libcroco3:kfreebsd-i386 ...
-Purging configuration files for libcroco3:kfreebsd-i386 ...
-Removing libthai0:kfreebsd-i386 ...
-Purging configuration files for libthai0:kfreebsd-i386 ...
-Removing libdatrie1:kfreebsd-i386 ...
-Purging configuration files for libdatrie1:kfreebsd-i386 ...
-Removing libglib2.0-0:kfreebsd-i386 ...
-Purging configuration files for libglib2.0-0:kfreebsd-i386 ...
-Removing libffi5:kfreebsd-i386 ...
-Purging configuration files for libffi5:kfreebsd-i386 ...
-Removing libfreetype6:kfreebsd-i386 ...
-Purging configuration files for libfreetype6:kfreebsd-i386 ...
-Removing libgfortran3:kfreebsd-i386 ...
-Purging configuration files for libgfortran3:kfreebsd-i386 ...
-Removing libxt6:kfreebsd-i386 ...
-Purging configuration files for libxt6:kfreebsd-i386 ...
-Removing libsm6:kfreebsd-i386 ...
-Purging configuration files for libsm6:kfreebsd-i386 ...
-Removing libice6:kfreebsd-i386 ...
-Purging configuration files for libice6:kfreebsd-i386 ...
-Removing libtiff4:kfreebsd-i386 ...
-Purging configuration files for libtiff4:kfreebsd-i386 ...
-Removing libjpeg8-dev:kfreebsd-i386 ...
-Removing libjpeg8:kfreebsd-i386 ...
-Removing libmagic1:kfreebsd-i386 ...
-Purging configuration files for libmagic1:kfreebsd-i386 ...
-Removing libncurses5-dev ...
-Removing libpaper-utils ...
-Removing libpaper1 ...
-Purging configuration files for libpaper1 ...
-Removing libpcre3-dev ...
-Removing libpcrecpp0:kfreebsd-i386 ...
-Purging configuration files for libpcrecpp0:kfreebsd-i386 ...
-Removing libpipeline1:kfreebsd-i386 ...
-Purging configuration files for libpipeline1:kfreebsd-i386 ...
-Removing libpixman-1-0:kfreebsd-i386 ...
-Purging configuration files for libpixman-1-0:kfreebsd-i386 ...
-Removing libpng12-dev ...
-Removing libreadline-dev:kfreebsd-i386 ...
-Removing libreadline6-dev:kfreebsd-i386 ...
-Removing libthai-data ...
-Removing libtinfo-dev:kfreebsd-i386 ...
-Removing libunistring0:kfreebsd-i386 ...
-Purging configuration files for libunistring0:kfreebsd-i386 ...
-Removing libxss1:kfreebsd-i386 ...
-Purging configuration files for libxss1:kfreebsd-i386 ...
-Removing libxrender1:kfreebsd-i386 ...
-Purging configuration files for libxrender1:kfreebsd-i386 ...
-Removing libxext6:kfreebsd-i386 ...
-Purging configuration files for libxext6:kfreebsd-i386 ...
-Removing libx11-6:kfreebsd-i386 ...
-Purging configuration files for libx11-6:kfreebsd-i386 ...
-Removing libx11-data ...
-Removing libxcb-shm0:kfreebsd-i386 ...
-Purging configuration files for libxcb-shm0:kfreebsd-i386 ...
-Removing libxcb-render0:kfreebsd-i386 ...
-Purging configuration files for libxcb-render0:kfreebsd-i386 ...
-Removing libxcb1:kfreebsd-i386 ...
-Purging configuration files for libxcb1:kfreebsd-i386 ...
-Removing libxau6:kfreebsd-i386 ...
-Purging configuration files for libxau6:kfreebsd-i386 ...
-Removing libxdmcp6:kfreebsd-i386 ...
-Purging configuration files for libxdmcp6:kfreebsd-i386 ...
-Removing libxml2 ...
-Purging configuration files for libxml2 ...
-Removing tcl8.5 ...
-Purging configuration files for tcl8.5 ...
-Removing ttf-dejavu-core ...
-Removing unzip ...
-Purging configuration files for unzip ...
-Removing x11-common ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of stop.
-Purging configuration files for x11-common ...
-Removing xdg-utils ...
-Removing zip ...
-Removing zlib1g-dev:kfreebsd-i386 ...
+Purging /var/lib/schroot/mount/sid-ki-sbuild-1368795825-47558/build/buildd-r-bioc-limma_3.16.3~dfsg-1-kfreebsd-i386-D30Vqd
+Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: kfreebsd-i386
-Build-Space: 2946
-Build-Time: 27
+Build-Space: 5576
+Build-Time: 25
Distribution: sid
-Install-Time: 208
-Job: r-bioc-limma_3.12.0~dfsg-1
+Install-Time: 60
+Job: r-bioc-limma_3.16.3~dfsg-1
Package: r-bioc-limma
-Package-Time: 262
-Source-Version: 3.12.0~dfsg-1
-Space: 2946
+Package-Time: 145
+Source-Version: 3.16.3~dfsg-1
+Space: 5576
Status: successful
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120412-0411
-Build needed 00:04:22, 2946k disc space
-Signature with key 'B2824833' requested:
+Finished at 20130517-1306
+Build needed 00:02:25, 5576k disc space
+Signature with key 'B31C365A' requested:
diff --git a/mips.log b/mips.log
index 67d01fb..2a41441 100644
--- a/mips.log
+++ b/mips.log
@@ -1,70 +1,63 @@
-From buildd at ball.debian.org Thu Apr 12 05:01:46 2012
-Return-path: <buildd at ball.debian.org>
+From buildd2 at lucatelli.debian.org Fri May 17 14:56:47 2013
+Return-path: <buildd2 at lucatelli.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=merikanto.debian.org,
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at ball.debian.org>)
- id 1SICAE-0000ri-M4
- for logs at buildd.debian.org; Thu, 12 Apr 2012 05:01:46 +0000
-Received: from ball.debian.org ([2001:41b8:202:deb:202:4cff:fefe:d09])
+ (Exim 4.72) (envelope-from <buildd2 at lucatelli.debian.org>)
+ id 1UdM5P-0005Ol-5K
+ for logs at buildd.debian.org; Fri, 17 May 2013 14:56:47 +0000
+Received: from lucatelli.debian.org ([2607:f8f0:610:4000:2e0:98ff:fe00:4141])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=ball.debian.org, EMAIL=hostmaster at ball.debian.org (verified)
+ CN=lucatelli.debian.org,
+ EMAIL=hostmaster at lucatelli.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at ball.debian.org>)
- id 1SICAD-00079W-RK
- for logs at buildd.debian.org; Thu, 12 Apr 2012 05:01:46 +0000
-Received: from buildd by ball.debian.org with local (Exim 4.72)
- (envelope-from <buildd at ball.debian.org>)
- id 1SICAC-00020x-Tg; Thu, 12 Apr 2012 05:01:45 +0000
-Date: Thu, 12 Apr 2012 05:01:44 +0000
-Message-Id: <E1SICAC-00020x-Tg at ball.debian.org>
-From: buildd on ball <buildd at ball.debian.org>
-To: logs at buildd.debian.org,buildd-porters at ball.debian.org
-Subject: Log for successful build of r-bioc-limma_3.12.0~dfsg-1 on mips
+ (Exim 4.72) (envelope-from <buildd2 at lucatelli.debian.org>)
+ id 1UdM5N-00021O-Qz
+ for logs at buildd.debian.org; Fri, 17 May 2013 14:56:46 +0000
+Received: from buildd2 by lucatelli.debian.org with local (Exim 4.72)
+ (envelope-from <buildd2 at lucatelli.debian.org>) id 1UdLoZ-0001IQ-6m
+ for logs at buildd.debian.org; Fri, 17 May 2013 14:39:23 +0000
+Date: Fri, 17 May 2013 14:39:23 +0000
+Message-Id: <E1UdLoZ-0001IQ-6m at lucatelli.debian.org>
+From: buildd on lucatelli <buildd2 at lucatelli.debian.org>
+To: logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.16.3~dfsg-1 on mips
(dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on ball.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on lucatelli.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.12.0~dfsg-1 (mips) 12 Apr 2012 04:51 ║
+║ r-bioc-limma 3.16.3~dfsg-1 (mips) 17 May 2013 14:28 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.12.0~dfsg-1
-Source Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
+Source Version: 3.16.3~dfsg-1
Architecture: mips
-Get:1 http://ftp.de.debian.org unstable InRelease [208 kB]
-Get:2 http://incoming.debian.org unstable InRelease [208 kB]
-Get:3 http://ftp.de.debian.org unstable/main Sources [6221 kB]
-Ign http://incoming.debian.org InRelease
-Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org unstable/main Sources [6221 kB]
-Get:6 http://ftp.de.debian.org unstable/contrib Sources [54.5 kB]
-Get:7 http://ftp.de.debian.org unstable/non-free Sources [97.7 kB]
-Get:8 http://ftp.de.debian.org unstable/main mips Packages [5775 kB]
-Get:9 http://ftp.de.debian.org unstable/contrib mips Packages [37.2 kB]
-Ign http://ftp.de.debian.org unstable/contrib TranslationIndex
-Get:10 http://ftp.de.debian.org unstable/main TranslationIndex [2223 B]
-Get:11 http://ftp.de.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:12 http://ftp.de.debian.org unstable/main Translation-en [3936 kB]
-Get:13 http://incoming.debian.org unstable/contrib Sources [54.5 kB]
-Get:14 http://incoming.debian.org unstable/non-free Sources [97.7 kB]
-Get:15 http://incoming.debian.org unstable/main mips Packages [5775 kB]
-Get:16 http://incoming.debian.org unstable/contrib mips Packages [37.2 kB]
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:17 http://incoming.debian.org unstable/main TranslationIndex [2223 B]
-Get:18 http://incoming.debian.org Release [1601 B]
-Get:19 http://incoming.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:20 http://incoming.debian.org unstable/main Translation-en [3936 kB]
-Get:21 http://incoming.debian.org Sources [42.8 kB]
-Get:22 http://incoming.debian.org Packages [744 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 33.5 MB in 1min 35s (351 kB/s)
+Get:1 http://mirror-ubc.debian.org unstable InRelease [205 kB]
+Get:2 http://incoming.debian.org unstable InRelease [205 kB]
+Get:3 http://mirror-ubc.debian.org unstable/main Sources [6729 kB]
+Get:4 http://incoming.debian.org buildd-unstable InRelease [111 kB]
+Get:5 http://incoming.debian.org unstable/main Sources [6729 kB]
+Get:6 http://mirror-ubc.debian.org unstable/contrib Sources [53.7 kB]
+Get:7 http://incoming.debian.org unstable/contrib Sources [53.7 kB]
+Get:8 http://mirror-ubc.debian.org unstable/non-free Sources [103 kB]
+Get:9 http://mirror-ubc.debian.org unstable/main mips Packages [6204 kB]
+Get:10 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:11 http://incoming.debian.org unstable/main mips Packages [6204 kB]
+Get:12 http://mirror-ubc.debian.org unstable/contrib mips Packages [37.4 kB]
+Get:13 http://incoming.debian.org unstable/contrib mips Packages [37.4 kB]
+Get:14 http://incoming.debian.org buildd-unstable/main Sources [104 kB]
+Get:15 http://incoming.debian.org buildd-unstable/contrib Sources [873 B]
+Get:16 http://incoming.debian.org buildd-unstable/non-free Sources [2683 B]
+Get:17 http://incoming.debian.org buildd-unstable/main mips Packages [55.6 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib mips Packages [14 B]
+Fetched 26.9 MB in 1min 51s (241 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -85,11 +78,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 288 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (dsc) [2030 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (tar) [283 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (diff) [3098 B]
-Fetched 288 kB in 1s (266 kB/s)
+Need to get 1058 kB of source archives.
+Get:1 http://mirror-ubc.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (dsc) [1409 B]
+Get:2 http://mirror-ubc.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (tar) [1052 kB]
+Get:3 http://mirror-ubc.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (diff) [4167 B]
+Fetched 1058 kB in 2s (510 kB/s)
Download complete and in download only mode
Check arch
@@ -102,527 +95,467 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.2-1)
+build-essential: already installed (11.6)
+fakeroot: already installed (1.19-2)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 72 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 72 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev
Checking for already installed dependencies...
-base-files: already installed (6.5)
-base-passwd: already installed (3.5.24)
-bash: already installed (4.2-1)
-coreutils: already installed (8.13-3)
-dash: already installed (0.5.7-2)
-debianutils: already installed (4.1)
-diffutils: already installed (1:3.2-1)
-dpkg: already installed (1.16.1.2)
-e2fsprogs: already installed (1.42-1)
-findutils: already installed (4.4.2-4)
-grep: already installed (2.10-1)
-gzip: already installed (1.4-2)
-hostname: already installed (3.10)
-ncurses-base: already installed (5.9-4)
-ncurses-bin: already installed (5.9-4)
-perl-base: already installed (5.14.2-6)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-18)
-sysvinit: already installed (2.88dsf-18)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-1.2)
-mount: already installed (2.20.1-1.2)
-util-linux: already installed (2.20.1-1.2)
-libc6-dev: already installed (2.13-24)
-gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
+base-files: already installed (7.2)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2+dfsg-1)
+bsdutils: already installed (1:2.20.1-5.4)
+coreutils: already installed (8.20-3)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1.1)
+findutils: already installed (4.4.2-5)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+libc-bin: already installed (2.17-2)
+login: already installed (1:4.1.5.1-1)
+mount: already installed (2.20.1-5.4)
+ncurses-base: already installed (5.9+20130504-1)
+ncurses-bin: already installed (5.9+20130504-1)
+perl-base: already installed (5.14.2-21)
+sed: already installed (4.2.2-1)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-5)
+util-linux: already installed (2.20.1-5.4)
+libc6-dev: already installed (2.17-2)
+gcc: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120410
+Using default version 9.20130516
cdbs: missing
r-base-dev: missing
-Using default version 2.15.0-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils cpp cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
- gcc gcc-4.6 gcc-4.6-base gcc-4.7-base gettext gettext-base gfortran
- gfortran-4.6 groff-base html2text intltool-debian libblas-dev libblas3gf
- libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1
- libfreetype6 libgcc1 libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5
- libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev
- libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
- libreadline-dev libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev
- libthai-data libthai0 libtiff4 libtinfo-dev libtinfo5 libunistring0 libx11-6
+ bsdmainutils file fontconfig fontconfig-config fonts-dejavu-core gettext
+ gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
+ libasprintf-dev libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6
+ libgettextpo-dev libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 libx11-6
libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
- libxft2 libxml2 libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf
- r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
- zlib1g zlib1g-dev
+ libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
+ tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts cpp-doc gcc-4.6-locales dh-make
- curl defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-multilib
- manpages-dev autoconf automake1.9 libtool flex bison gdb gcc-doc
- gcc-4.6-multilib libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg
- libquadmath-dbg libmudflap0-dbg gettext-doc gfortran-multilib gfortran-doc
- gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
- ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
- r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
- texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
- texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
- texi2html tclreadline gvfs-bin
+ wamerican wordlist whois vacation devscripts dh-make gettext-doc
+ gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
+ libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base
+ texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
+ texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
+ texlive-latex-extra texinfo texi2html tcl-tclreadline gvfs-bin
Recommended packages:
- autotools-dev patchutils autopoint libglib2.0-data shared-mime-info libgpm2
+ autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
- bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config
- gcc-4.7-base gettext gettext-base gfortran gfortran-4.6 groff-base html2text
- intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3
- libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgfortran3
- libglib2.0-0 libice6 libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf
- libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3
+ bsdmainutils cdbs debhelper file fontconfig fontconfig-config
+ fonts-dejavu-core gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libasprintf-dev libasprintf0c2 libblas-dev
+ libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi6
+ libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0 libgfortran3
+ libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3
+ libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
- libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff5
libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core
ucf unzip x11-common xdg-utils zip zlib1g-dev
-The following packages will be upgraded:
- cpp cpp-4.6 g++-4.6 gcc gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libncurses5
- libstdc++6 libstdc++6-4.6-dev libtinfo5 ncurses-bin zlib1g
-14 upgraded, 78 newly installed, 0 to remove and 58 not upgraded.
-Need to get 74.4 MB of archives.
-After this operation, 121 MB of additional disk space will be used.
-Get:1 http://ftp.de.debian.org/debian/ unstable/main ncurses-bin mips 5.9-6 [329 kB]
-Get:2 http://ftp.de.debian.org/debian/ unstable/main gcc-4.7-base mips 4.7.0-2 [139 kB]
-Get:3 http://ftp.de.debian.org/debian/ unstable/main libgcc1 mips 1:4.7.0-2 [70.4 kB]
-Get:4 http://ftp.de.debian.org/debian/ unstable/main libstdc++6 mips 4.7.0-2 [311 kB]
-Get:5 http://ftp.de.debian.org/debian/ unstable/main libtinfo5 mips 5.9-6 [268 kB]
-Get:6 http://ftp.de.debian.org/debian/ unstable/main libncurses5 mips 5.9-6 [284 kB]
-Get:7 http://ftp.de.debian.org/debian/ unstable/main zlib1g mips 1:1.2.6.dfsg-2 [85.3 kB]
-Get:8 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 mips 1.2.1-1 [36.7 kB]
-Get:9 http://ftp.de.debian.org/debian/ unstable/main libmagic1 mips 5.11-1 [253 kB]
-Get:10 http://ftp.de.debian.org/debian/ unstable/main libpcre3 mips 1:8.30-4 [244 kB]
-Get:11 http://ftp.de.debian.org/debian/ unstable/main libexpat1 mips 2.1.0-1 [145 kB]
-Get:12 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 mips 2.4.9-1 [433 kB]
-Get:13 http://ftp.de.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:14 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:15 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3.1 [219 kB]
-Get:16 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 mips 2.8.0-3.1 [286 kB]
-Get:17 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 mips 0.24.4-1 [362 kB]
-Get:18 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 mips 1.2.49-1 [184 kB]
-Get:19 http://ftp.de.debian.org/debian/ unstable/main libxau6 mips 1:1.0.7-1 [18.3 kB]
-Get:20 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 mips 1:1.1.0-4 [22.4 kB]
-Get:21 http://ftp.de.debian.org/debian/ unstable/main libxcb1 mips 1.8.1-1 [41.2 kB]
-Get:22 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-4 [187 kB]
-Get:23 http://ftp.de.debian.org/debian/ unstable/main libx11-6 mips 2:1.4.4-4 [859 kB]
-Get:24 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 mips 1.8.1-1 [16.2 kB]
-Get:25 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 mips 1.8.1-1 [9952 B]
-Get:26 http://ftp.de.debian.org/debian/ unstable/main libxrender1 mips 1:0.9.6-2 [30.2 kB]
-Get:27 http://ftp.de.debian.org/debian/ unstable/main libcairo2 mips 1.12.0-2 [901 kB]
-Get:28 http://ftp.de.debian.org/debian/ unstable/main libffi5 mips 3.0.10-3 [23.0 kB]
-Get:29 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 mips 2.32.0-4 [1968 kB]
-Get:30 http://ftp.de.debian.org/debian/ unstable/main libxml2 mips 2.7.8.dfsg-7 [859 kB]
-Get:31 http://ftp.de.debian.org/debian/ unstable/main libcroco3 mips 0.6.5-1 [140 kB]
-Get:32 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 mips 0.2.5-3 [28.1 kB]
-Get:33 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 mips 4.7.0-2 [240 kB]
-Get:34 http://ftp.de.debian.org/debian/ unstable/main libgomp1 mips 4.7.0-2 [28.8 kB]
-Get:35 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.6+12 [283 kB]
-Get:36 http://ftp.de.debian.org/debian/ unstable/main libice6 mips 2:1.0.8-2 [56.5 kB]
-Get:37 http://ftp.de.debian.org/debian/ unstable/main libjpeg8 mips 8d-1 [146 kB]
-Get:38 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.17-1 [205 kB]
-Get:39 http://ftp.de.debian.org/debian/ unstable/main libthai0 mips 0.1.17-1 [43.7 kB]
-Get:40 http://ftp.de.debian.org/debian/ unstable/main libxft2 mips 2.2.0-3 [56.7 kB]
-Get:41 http://ftp.de.debian.org/debian/ unstable/main fontconfig mips 2.8.0-3.1 [334 kB]
-Get:42 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 mips 1.30.0-1 [440 kB]
-Get:43 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 mips 1:8.30-4 [125 kB]
-Get:44 http://ftp.de.debian.org/debian/ unstable/main libsm6 mips 2:1.2.1-2 [32.6 kB]
-Get:45 http://ftp.de.debian.org/debian/ unstable/main libtiff4 mips 3.9.6-2 [191 kB]
-Get:46 http://ftp.de.debian.org/debian/ unstable/main libunistring0 mips 0.9.3-5 [411 kB]
-Get:47 http://ftp.de.debian.org/debian/ unstable/main libxext6 mips 2:1.3.0-3 [48.4 kB]
-Get:48 http://ftp.de.debian.org/debian/ unstable/main libxss1 mips 1:1.2.1-2 [16.5 kB]
-Get:49 http://ftp.de.debian.org/debian/ unstable/main libxt6 mips 1:1.1.1-2 [189 kB]
-Get:50 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils mips 9.0.1 [207 kB]
-Get:51 http://ftp.de.debian.org/debian/ unstable/main groff-base mips 1.21-7 [1154 kB]
-Get:52 http://ftp.de.debian.org/debian/ unstable/main man-db mips 2.6.1-2 [1024 kB]
-Get:53 http://ftp.de.debian.org/debian/ unstable/main g++-4.6 mips 4.6.3-3 [6301 kB]
-Get:54 http://ftp.de.debian.org/debian/ unstable/main libstdc++6-4.6-dev mips 4.6.3-3 [1725 kB]
-Get:55 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6 mips 4.6.3-3 [4048 kB]
-Get:56 http://ftp.de.debian.org/debian/ unstable/main cpp-4.6 mips 4.6.3-3 [3771 kB]
-Get:57 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6-base mips 4.6.3-3 [140 kB]
-Get:58 http://ftp.de.debian.org/debian/ unstable/main file mips 5.11-1 [53.2 kB]
-Get:59 http://ftp.de.debian.org/debian/ unstable/main gettext-base mips 0.18.1.1-5 [136 kB]
-Get:60 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.109 [79.4 kB]
-Get:61 http://ftp.de.debian.org/debian/ unstable/main cpp mips 4:4.6.3-4 [16.3 kB]
-Get:62 http://ftp.de.debian.org/debian/ unstable/main html2text mips 1.3.2a-15 [103 kB]
-Get:63 http://ftp.de.debian.org/debian/ unstable/main gettext mips 0.18.1.1-5 [2032 kB]
-Get:64 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:65 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:66 http://ftp.de.debian.org/debian/ unstable/main debhelper all 9.20120410 [694 kB]
-Get:67 http://ftp.de.debian.org/debian/ unstable/main dpatch all 2.0.35 [95.2 kB]
-Get:68 http://ftp.de.debian.org/debian/ unstable/main gcc mips 4:4.6.3-4 [5030 B]
-Get:69 http://ftp.de.debian.org/debian/ unstable/main gfortran-4.6 mips 4.6.3-3 [4377 kB]
-Get:70 http://ftp.de.debian.org/debian/ unstable/main gfortran mips 4:4.6.3-4 [1134 B]
-Get:71 http://ftp.de.debian.org/debian/ unstable/main libblas3gf mips 1.2.20110419-2 [203 kB]
-Get:72 http://ftp.de.debian.org/debian/ unstable/main libblas-dev mips 1.2.20110419-2 [243 kB]
-Get:73 http://ftp.de.debian.org/debian/ unstable/main libbz2-dev mips 1.0.6-1 [37.3 kB]
-Get:74 http://ftp.de.debian.org/debian/ unstable/main libjpeg8-dev mips 8d-1 [258 kB]
-Get:75 http://ftp.de.debian.org/debian/ unstable/main liblapack3gf mips 3.3.1-1 [4250 kB]
-Get:76 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev mips 3.3.1-1 [4908 kB]
-Get:77 http://ftp.de.debian.org/debian/ unstable/main libtinfo-dev mips 5.9-6 [104 kB]
-Get:78 http://ftp.de.debian.org/debian/ unstable/main libncurses5-dev mips 5.9-6 [406 kB]
-Get:79 http://ftp.de.debian.org/debian/ unstable/main libpaper1 mips 1.1.24+nmu1 [21.3 kB]
-Get:80 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils mips 1.1.24+nmu1 [18.2 kB]
-Get:81 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev mips 1:8.30-4 [360 kB]
-Get:82 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev mips 1:1.2.6.dfsg-2 [211 kB]
-Get:83 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev mips 1.2.49-1 [275 kB]
-Get:84 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev mips 6.2-8 [270 kB]
-Get:85 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev mips 6.2-8 [890 B]
-Get:86 http://ftp.de.debian.org/debian/ unstable/main zip mips 3.0-4 [332 kB]
-Get:87 http://ftp.de.debian.org/debian/ unstable/main unzip mips 6.0-6 [188 kB]
-Get:88 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB]
-Get:89 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 mips 8.5.11-1 [1613 kB]
-Get:90 http://ftp.de.debian.org/debian/ unstable/main tk8.5 mips 8.5.11-1 [1173 kB]
-Get:91 http://ftp.de.debian.org/debian/ unstable/main r-base-core mips 2.15.0-1 [20.0 MB]
-Get:92 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 2.15.0-1 [3900 B]
+0 upgraded, 81 newly installed, 0 to remove and 0 not upgraded.
+Need to get 56.7 MB of archives.
+After this operation, 122 MB of additional disk space will be used.
+Get:1 http://incoming.debian.org/debian-buildd/ buildd-unstable/main libcroco3 mips 0.6.8-2 [119 kB]
+Get:2 http://mirror-ubc.debian.org/debian/ unstable/main libpipeline1 mips 1.2.3-1 [37.7 kB]
+Get:3 http://mirror-ubc.debian.org/debian/ unstable/main groff-base mips 1.22.2-2 [708 kB]
+Get:4 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-base-core mips 3.0.1-1 [21.0 MB]
+Get:5 http://mirror-ubc.debian.org/debian/ unstable/main bsdmainutils mips 9.0.5 [210 kB]
+Get:6 http://mirror-ubc.debian.org/debian/ unstable/main man-db mips 2.6.3-6 [868 kB]
+Get:7 http://mirror-ubc.debian.org/debian/ unstable/main libasprintf0c2 mips 0.18.1.1-10 [27.1 kB]
+Get:8 http://mirror-ubc.debian.org/debian/ unstable/main libmagic1 mips 1:5.14-1 [216 kB]
+Get:9 http://mirror-ubc.debian.org/debian/ unstable/main libxml2 mips 2.8.0+dfsg1-7+nmu1 [870 kB]
+Get:10 http://mirror-ubc.debian.org/debian/ unstable/main libexpat1 mips 2.1.0-3 [145 kB]
+Get:11 http://mirror-ubc.debian.org/debian/ unstable/main libfreetype6 mips 2.4.9-1.1 [433 kB]
+Get:12 http://mirror-ubc.debian.org/debian/ unstable/main ucf all 3.0025+nmu3 [70.8 kB]
+Get:13 http://mirror-ubc.debian.org/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
+Get:14 http://mirror-ubc.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
+Get:15 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:16 http://mirror-ubc.debian.org/debian/ unstable/main libfontconfig1 mips 2.9.0-7.1 [302 kB]
+Get:17 http://mirror-ubc.debian.org/debian/ unstable/main libpixman-1-0 mips 0.26.0-4 [383 kB]
+Get:18 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-0 mips 1.2.49-4 [184 kB]
+Get:19 http://mirror-ubc.debian.org/debian/ unstable/main libxau6 mips 1:1.0.7-1 [18.3 kB]
+Get:20 http://mirror-ubc.debian.org/debian/ unstable/main libxdmcp6 mips 1:1.1.1-1 [25.5 kB]
+Get:21 http://mirror-ubc.debian.org/debian/ unstable/main libxcb1 mips 1.8.1-2 [41.6 kB]
+Get:22 http://mirror-ubc.debian.org/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:23 http://mirror-ubc.debian.org/debian/ unstable/main libx11-6 mips 2:1.5.0-1 [870 kB]
+Get:24 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-render0 mips 1.8.1-2 [16.3 kB]
+Get:25 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-shm0 mips 1.8.1-2 [10.1 kB]
+Get:26 http://mirror-ubc.debian.org/debian/ unstable/main libxext6 mips 2:1.3.1-2 [51.4 kB]
+Get:27 http://mirror-ubc.debian.org/debian/ unstable/main libxrender1 mips 1:0.9.7-1 [30.6 kB]
+Get:28 http://mirror-ubc.debian.org/debian/ unstable/main libcairo2 mips 1.12.14-4 [1012 kB]
+Get:29 http://mirror-ubc.debian.org/debian/ unstable/main libffi6 mips 3.0.13-4 [19.9 kB]
+Get:30 http://mirror-ubc.debian.org/debian/ unstable/main libglib2.0-0 mips 2.36.1-2build1 [1891 kB]
+Get:31 http://mirror-ubc.debian.org/debian/ unstable/main libdatrie1 mips 0.2.6-2 [29.1 kB]
+Get:32 http://mirror-ubc.debian.org/debian/ unstable/main libunistring0 mips 0.9.3-5 [411 kB]
+Get:33 http://mirror-ubc.debian.org/debian/ unstable/main libgettextpo0 mips 0.18.1.1-10 [140 kB]
+Get:34 http://mirror-ubc.debian.org/debian/ unstable/main libgfortran3 mips 4.8.0-7 [237 kB]
+Get:35 http://mirror-ubc.debian.org/debian/ unstable/main x11-common all 1:7.7+3 [284 kB]
+Get:36 http://mirror-ubc.debian.org/debian/ unstable/main libice6 mips 2:1.0.8-2 [56.5 kB]
+Get:37 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg8 mips 8d-1 [146 kB]
+Get:38 http://mirror-ubc.debian.org/debian/ unstable/main libthai-data all 0.1.19-2 [156 kB]
+Get:39 http://mirror-ubc.debian.org/debian/ unstable/main libthai0 mips 0.1.19-2 [41.4 kB]
+Get:40 http://mirror-ubc.debian.org/debian/ unstable/main libxft2 mips 2.3.1-1 [59.8 kB]
+Get:41 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig mips 2.9.0-7.1 [347 kB]
+Get:42 http://mirror-ubc.debian.org/debian/ unstable/main libpango1.0-0 mips 1.30.0-1 [440 kB]
+Get:43 http://mirror-ubc.debian.org/debian/ unstable/main libpaper1 mips 1.1.24+nmu2 [21.5 kB]
+Get:44 http://mirror-ubc.debian.org/debian/ unstable/main libpcrecpp0 mips 1:8.31-2 [128 kB]
+Get:45 http://mirror-ubc.debian.org/debian/ unstable/main libsm6 mips 2:1.2.1-2 [32.6 kB]
+Get:46 http://mirror-ubc.debian.org/debian/ unstable/main libjbig0 mips 2.0-2 [32.5 kB]
+Get:47 http://mirror-ubc.debian.org/debian/ unstable/main libtiff5 mips 4.0.2-6 [229 kB]
+Get:48 http://mirror-ubc.debian.org/debian/ unstable/main libxss1 mips 1:1.2.2-1 [17.3 kB]
+Get:49 http://mirror-ubc.debian.org/debian/ unstable/main libxt6 mips 1:1.1.3-1 [192 kB]
+Get:50 http://mirror-ubc.debian.org/debian/ unstable/main file mips 1:5.14-1 [53.8 kB]
+Get:51 http://mirror-ubc.debian.org/debian/ unstable/main gettext-base mips 0.18.1.1-10 [141 kB]
+Get:52 http://mirror-ubc.debian.org/debian/ unstable/main cdbs all 0.4.121 [80.5 kB]
+Get:53 http://mirror-ubc.debian.org/debian/ unstable/main html2text mips 1.3.2a-15 [103 kB]
+Get:54 http://mirror-ubc.debian.org/debian/ unstable/main libasprintf-dev mips 0.18.1.1-10 [26.9 kB]
+Get:55 http://mirror-ubc.debian.org/debian/ unstable/main libgettextpo-dev mips 0.18.1.1-10 [189 kB]
+Get:56 http://mirror-ubc.debian.org/debian/ unstable/main gettext mips 0.18.1.1-10 [1753 kB]
+Get:57 http://mirror-ubc.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:58 http://mirror-ubc.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:59 http://mirror-ubc.debian.org/debian/ unstable/main debhelper all 9.20130516 [708 kB]
+Get:60 http://mirror-ubc.debian.org/debian/ unstable/main gfortran-4.6 mips 4.6.4-2 [4302 kB]
+Get:61 http://mirror-ubc.debian.org/debian/ unstable/main gfortran mips 4:4.6.3-8 [1136 B]
+Get:62 http://mirror-ubc.debian.org/debian/ unstable/main libblas3 mips 1.2.20110419-5 [201 kB]
+Get:63 http://mirror-ubc.debian.org/debian/ unstable/main libblas-dev mips 1.2.20110419-5 [241 kB]
+Get:64 http://mirror-ubc.debian.org/debian/ unstable/main libbz2-dev mips 1.0.6-4 [37.2 kB]
+Get:65 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg8-dev mips 8d-1 [258 kB]
+Get:66 http://mirror-ubc.debian.org/debian/ unstable/main liblapack3 mips 3.4.2+dfsg-1 [4361 kB]
+Get:67 http://mirror-ubc.debian.org/debian/ unstable/main liblapack-dev mips 3.4.2+dfsg-1 [5141 kB]
+Get:68 http://mirror-ubc.debian.org/debian/ unstable/main libtinfo-dev mips 5.9+20130504-1 [108 kB]
+Get:69 http://mirror-ubc.debian.org/debian/ unstable/main libncurses5-dev mips 5.9+20130504-1 [226 kB]
+Get:70 http://mirror-ubc.debian.org/debian/ unstable/main libpaper-utils mips 1.1.24+nmu2 [18.3 kB]
+Get:71 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3-dev mips 1:8.31-2 [367 kB]
+Get:72 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g-dev mips 1:1.2.8.dfsg-1 [217 kB]
+Get:73 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-dev mips 1.2.49-4 [275 kB]
+Get:74 http://mirror-ubc.debian.org/debian/ unstable/main libreadline6-dev mips 6.2+dfsg-0.1 [198 kB]
+Get:75 http://mirror-ubc.debian.org/debian/ unstable/main libreadline-dev mips 6.2+dfsg-0.1 [894 B]
+Get:76 http://mirror-ubc.debian.org/debian/ unstable/main zip mips 3.0-7 [332 kB]
+Get:77 http://mirror-ubc.debian.org/debian/ unstable/main unzip mips 6.0-9 [189 kB]
+Get:78 http://mirror-ubc.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:79 http://mirror-ubc.debian.org/debian/ unstable/main tcl8.5 mips 8.5.11-2 [1617 kB]
+Get:80 http://mirror-ubc.debian.org/debian/ unstable/main tk8.5 mips 8.5.11-2 [1175 kB]
+Get:81 http://mirror-ubc.debian.org/debian/ unstable/main r-base-dev all 3.0.1~20130512-1 [3910 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 74.4 MB in 9s (7919 kB/s)
-(Reading database ... 10640 files and directories currently installed.)
-Preparing to replace ncurses-bin 5.9-4 (using .../ncurses-bin_5.9-6_mips.deb) ...
-Unpacking replacement ncurses-bin ...
-Setting up ncurses-bin (5.9-6) ...
-Selecting previously unselected package gcc-4.7-base.
-(Reading database ... 10640 files and directories currently installed.)
-Unpacking gcc-4.7-base (from .../gcc-4.7-base_4.7.0-2_mips.deb) ...
-Setting up gcc-4.7-base (4.7.0-2) ...
-(Reading database ... 10648 files and directories currently installed.)
-Preparing to replace libgcc1 1:4.6.2-12 (using .../libgcc1_1%3a4.7.0-2_mips.deb) ...
-Unpacking replacement libgcc1 ...
-Setting up libgcc1 (1:4.7.0-2) ...
-(Reading database ... 10648 files and directories currently installed.)
-Preparing to replace libstdc++6 4.6.2-12 (using .../libstdc++6_4.7.0-2_mips.deb) ...
-Unpacking replacement libstdc++6 ...
-Setting up libstdc++6 (4.7.0-2) ...
-(Reading database ... 10648 files and directories currently installed.)
-Preparing to replace libtinfo5 5.9-4 (using .../libtinfo5_5.9-6_mips.deb) ...
-Unpacking replacement libtinfo5 ...
-Setting up libtinfo5 (5.9-6) ...
-(Reading database ... 10648 files and directories currently installed.)
-Preparing to replace libncurses5 5.9-4 (using .../libncurses5_5.9-6_mips.deb) ...
-Unpacking replacement libncurses5 ...
-Setting up libncurses5 (5.9-6) ...
-(Reading database ... 10648 files and directories currently installed.)
-Preparing to replace zlib1g 1:1.2.3.4.dfsg-3 (using .../zlib1g_1%3a1.2.6.dfsg-2_mips.deb) ...
-Unpacking replacement zlib1g ...
-Setting up zlib1g (1:1.2.6.dfsg-2) ...
-Selecting previously unselected package libpipeline1.
-(Reading database ... 10648 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_mips.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.11-1_mips.deb) ...
-Selecting previously unselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_1%3a8.30-4_mips.deb) ...
-Selecting previously unselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.1.0-1_mips.deb) ...
-Selecting previously unselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.9-1_mips.deb) ...
+Fetched 56.7 MB in 33s (1690 kB/s)
+Selecting previously unselected package libpipeline1:mips.
+(Reading database ... 10865 files and directories currently installed.)
+Unpacking libpipeline1:mips (from .../libpipeline1_1.2.3-1_mips.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.22.2-2_mips.deb) ...
+Selecting previously unselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_mips.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.3-6_mips.deb) ...
+Selecting previously unselected package libasprintf0c2:mips.
+Unpacking libasprintf0c2:mips (from .../libasprintf0c2_0.18.1.1-10_mips.deb) ...
+Selecting previously unselected package libmagic1:mips.
+Unpacking libmagic1:mips (from .../libmagic1_1%3a5.14-1_mips.deb) ...
+Selecting previously unselected package libxml2:mips.
+Unpacking libxml2:mips (from .../libxml2_2.8.0+dfsg1-7+nmu1_mips.deb) ...
+Selecting previously unselected package libexpat1:mips.
+Unpacking libexpat1:mips (from .../libexpat1_2.1.0-3_mips.deb) ...
+Selecting previously unselected package libfreetype6:mips.
+Unpacking libfreetype6:mips (from .../libfreetype6_2.4.9-1.1_mips.deb) ...
Selecting previously unselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ...
Moving old data out of the way
+Selecting previously unselected package fonts-dejavu-core.
+Unpacking fonts-dejavu-core (from .../fonts-dejavu-core_2.33+svn2514-3_all.deb) ...
Selecting previously unselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33+svn2514-3_all.deb) ...
Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
-Selecting previously unselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3.1_mips.deb) ...
-Selecting previously unselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.4-1_mips.deb) ...
-Selecting previously unselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.49-1_mips.deb) ...
-Selecting previously unselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.7-1_mips.deb) ...
-Selecting previously unselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_mips.deb) ...
-Selecting previously unselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.8.1-1_mips.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ...
+Selecting previously unselected package libfontconfig1:mips.
+Unpacking libfontconfig1:mips (from .../libfontconfig1_2.9.0-7.1_mips.deb) ...
+Selecting previously unselected package libpixman-1-0:mips.
+Unpacking libpixman-1-0:mips (from .../libpixman-1-0_0.26.0-4_mips.deb) ...
+Selecting previously unselected package libpng12-0:mips.
+Unpacking libpng12-0:mips (from .../libpng12-0_1.2.49-4_mips.deb) ...
+Selecting previously unselected package libxau6:mips.
+Unpacking libxau6:mips (from .../libxau6_1%3a1.0.7-1_mips.deb) ...
+Selecting previously unselected package libxdmcp6:mips.
+Unpacking libxdmcp6:mips (from .../libxdmcp6_1%3a1.1.1-1_mips.deb) ...
+Selecting previously unselected package libxcb1:mips.
+Unpacking libxcb1:mips (from .../libxcb1_1.8.1-2_mips.deb) ...
Selecting previously unselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
-Selecting previously unselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4_mips.deb) ...
-Selecting previously unselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.8.1-1_mips.deb) ...
-Selecting previously unselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.8.1-1_mips.deb) ...
-Selecting previously unselected package libxrender1.
-Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_mips.deb) ...
-Selecting previously unselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.12.0-2_mips.deb) ...
-Selecting previously unselected package libffi5.
-Unpacking libffi5 (from .../libffi5_3.0.10-3_mips.deb) ...
-Selecting previously unselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.32.0-4_mips.deb) ...
-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-7_mips.deb) ...
-Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.5-1_mips.deb) ...
-Selecting previously unselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.5-3_mips.deb) ...
-Selecting previously unselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.7.0-2_mips.deb) ...
-Preparing to replace libgomp1 4.6.2-12 (using .../libgomp1_4.7.0-2_mips.deb) ...
-Unpacking replacement libgomp1 ...
+Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ...
+Selecting previously unselected package libx11-6:mips.
+Unpacking libx11-6:mips (from .../libx11-6_2%3a1.5.0-1_mips.deb) ...
+Selecting previously unselected package libxcb-render0:mips.
+Unpacking libxcb-render0:mips (from .../libxcb-render0_1.8.1-2_mips.deb) ...
+Selecting previously unselected package libxcb-shm0:mips.
+Unpacking libxcb-shm0:mips (from .../libxcb-shm0_1.8.1-2_mips.deb) ...
+Selecting previously unselected package libxext6:mips.
+Unpacking libxext6:mips (from .../libxext6_2%3a1.3.1-2_mips.deb) ...
+Selecting previously unselected package libxrender1:mips.
+Unpacking libxrender1:mips (from .../libxrender1_1%3a0.9.7-1_mips.deb) ...
+Selecting previously unselected package libcairo2:mips.
+Unpacking libcairo2:mips (from .../libcairo2_1.12.14-4_mips.deb) ...
+Selecting previously unselected package libffi6:mips.
+Unpacking libffi6:mips (from .../libffi6_3.0.13-4_mips.deb) ...
+Selecting previously unselected package libglib2.0-0:mips.
+Unpacking libglib2.0-0:mips (from .../libglib2.0-0_2.36.1-2build1_mips.deb) ...
+Selecting previously unselected package libcroco3:mips.
+Unpacking libcroco3:mips (from .../libcroco3_0.6.8-2_mips.deb) ...
+Selecting previously unselected package libdatrie1:mips.
+Unpacking libdatrie1:mips (from .../libdatrie1_0.2.6-2_mips.deb) ...
+Selecting previously unselected package libunistring0:mips.
+Unpacking libunistring0:mips (from .../libunistring0_0.9.3-5_mips.deb) ...
+Selecting previously unselected package libgettextpo0:mips.
+Unpacking libgettextpo0:mips (from .../libgettextpo0_0.18.1.1-10_mips.deb) ...
+Selecting previously unselected package libgfortran3:mips.
+Unpacking libgfortran3:mips (from .../libgfortran3_4.8.0-7_mips.deb) ...
Selecting previously unselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
-Selecting previously unselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.8-2_mips.deb) ...
-Selecting previously unselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8d-1_mips.deb) ...
+Unpacking x11-common (from .../x11-common_1%3a7.7+3_all.deb) ...
+Selecting previously unselected package libice6:mips.
+Unpacking libice6:mips (from .../libice6_2%3a1.0.8-2_mips.deb) ...
+Selecting previously unselected package libjpeg8:mips.
+Unpacking libjpeg8:mips (from .../libjpeg8_8d-1_mips.deb) ...
Selecting previously unselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.17-1_all.deb) ...
-Selecting previously unselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.17-1_mips.deb) ...
-Selecting previously unselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-3_mips.deb) ...
+Unpacking libthai-data (from .../libthai-data_0.1.19-2_all.deb) ...
+Selecting previously unselected package libthai0:mips.
+Unpacking libthai0:mips (from .../libthai0_0.1.19-2_mips.deb) ...
+Selecting previously unselected package libxft2:mips.
+Unpacking libxft2:mips (from .../libxft2_2.3.1-1_mips.deb) ...
Selecting previously unselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-3.1_mips.deb) ...
-Selecting previously unselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.30.0-1_mips.deb) ...
-Selecting previously unselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_1%3a8.30-4_mips.deb) ...
-Selecting previously unselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.1-2_mips.deb) ...
-Selecting previously unselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.6-2_mips.deb) ...
-Selecting previously unselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-5_mips.deb) ...
-Selecting previously unselected package libxext6.
-Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_mips.deb) ...
-Selecting previously unselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_mips.deb) ...
-Selecting previously unselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_mips.deb) ...
-Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_mips.deb) ...
-Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-7_mips.deb) ...
-Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.1-2_mips.deb) ...
-Preparing to replace g++-4.6 4.6.2-12 (using .../g++-4.6_4.6.3-3_mips.deb) ...
-Unpacking replacement g++-4.6 ...
-Preparing to replace libstdc++6-4.6-dev 4.6.2-12 (using .../libstdc++6-4.6-dev_4.6.3-3_mips.deb) ...
-Unpacking replacement libstdc++6-4.6-dev ...
-Preparing to replace gcc-4.6 4.6.2-12 (using .../gcc-4.6_4.6.3-3_mips.deb) ...
-Unpacking replacement gcc-4.6 ...
-Preparing to replace cpp-4.6 4.6.2-12 (using .../cpp-4.6_4.6.3-3_mips.deb) ...
-Unpacking replacement cpp-4.6 ...
-Preparing to replace gcc-4.6-base 4.6.2-12 (using .../gcc-4.6-base_4.6.3-3_mips.deb) ...
-Unpacking replacement gcc-4.6-base ...
+Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_mips.deb) ...
+Selecting previously unselected package libpango1.0-0:mips.
+Unpacking libpango1.0-0:mips (from .../libpango1.0-0_1.30.0-1_mips.deb) ...
+Selecting previously unselected package libpaper1:mips.
+Unpacking libpaper1:mips (from .../libpaper1_1.1.24+nmu2_mips.deb) ...
+Selecting previously unselected package libpcrecpp0:mips.
+Unpacking libpcrecpp0:mips (from .../libpcrecpp0_1%3a8.31-2_mips.deb) ...
+Selecting previously unselected package libsm6:mips.
+Unpacking libsm6:mips (from .../libsm6_2%3a1.2.1-2_mips.deb) ...
+Selecting previously unselected package libjbig0:mips.
+Unpacking libjbig0:mips (from .../libjbig0_2.0-2_mips.deb) ...
+Selecting previously unselected package libtiff5:mips.
+Unpacking libtiff5:mips (from .../libtiff5_4.0.2-6_mips.deb) ...
+Selecting previously unselected package libxss1:mips.
+Unpacking libxss1:mips (from .../libxss1_1%3a1.2.2-1_mips.deb) ...
+Selecting previously unselected package libxt6:mips.
+Unpacking libxt6:mips (from .../libxt6_1%3a1.1.3-1_mips.deb) ...
Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.11-1_mips.deb) ...
+Unpacking file (from .../file_1%3a5.14-1_mips.deb) ...
Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_mips.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_mips.deb) ...
Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.109_all.deb) ...
-Preparing to replace cpp 4:4.6.2-4 (using .../cpp_4%3a4.6.3-4_mips.deb) ...
-Unpacking replacement cpp ...
+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_mips.deb) ...
+Selecting previously unselected package libasprintf-dev:mips.
+Unpacking libasprintf-dev:mips (from .../libasprintf-dev_0.18.1.1-10_mips.deb) ...
+Selecting previously unselected package libgettextpo-dev:mips.
+Unpacking libgettextpo-dev:mips (from .../libgettextpo-dev_0.18.1.1-10_mips.deb) ...
Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-5_mips.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-10_mips.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120410_all.deb) ...
-Selecting previously unselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.35_all.deb) ...
-Preparing to replace gcc 4:4.6.2-4 (using .../gcc_4%3a4.6.3-4_mips.deb) ...
-Removing old gcc doc directory.
-Unpacking replacement gcc ...
+Unpacking debhelper (from .../debhelper_9.20130516_all.deb) ...
Selecting previously unselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-3_mips.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.4-2_mips.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.3-4_mips.deb) ...
-Selecting previously unselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_mips.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.3-8_mips.deb) ...
+Selecting previously unselected package libblas3.
+Unpacking libblas3 (from .../libblas3_1.2.20110419-5_mips.deb) ...
Selecting previously unselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_mips.deb) ...
-Selecting previously unselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.6-1_mips.deb) ...
-Selecting previously unselected package libjpeg8-dev.
-Unpacking libjpeg8-dev (from .../libjpeg8-dev_8d-1_mips.deb) ...
-Selecting previously unselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_mips.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_mips.deb) ...
+Selecting previously unselected package libbz2-dev:mips.
+Unpacking libbz2-dev:mips (from .../libbz2-dev_1.0.6-4_mips.deb) ...
+Selecting previously unselected package libjpeg8-dev:mips.
+Unpacking libjpeg8-dev:mips (from .../libjpeg8-dev_8d-1_mips.deb) ...
+Selecting previously unselected package liblapack3.
+Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_mips.deb) ...
Selecting previously unselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_mips.deb) ...
-Selecting previously unselected package libtinfo-dev.
-Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-6_mips.deb) ...
-Selecting previously unselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-6_mips.deb) ...
-Selecting previously unselected package libpaper1.
-Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_mips.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.4.2+dfsg-1_mips.deb) ...
+Selecting previously unselected package libtinfo-dev:mips.
+Unpacking libtinfo-dev:mips (from .../libtinfo-dev_5.9+20130504-1_mips.deb) ...
+Selecting previously unselected package libncurses5-dev:mips.
+Unpacking libncurses5-dev:mips (from .../libncurses5-dev_5.9+20130504-1_mips.deb) ...
Selecting previously unselected package libpaper-utils.
-Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_mips.deb) ...
-Selecting previously unselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_1%3a8.30-4_mips.deb) ...
-Selecting previously unselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.6.dfsg-2_mips.deb) ...
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_mips.deb) ...
+Selecting previously unselected package libpcre3-dev:mips.
+Unpacking libpcre3-dev:mips (from .../libpcre3-dev_1%3a8.31-2_mips.deb) ...
+Selecting previously unselected package zlib1g-dev:mips.
+Unpacking zlib1g-dev:mips (from .../zlib1g-dev_1%3a1.2.8.dfsg-1_mips.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-1_mips.deb) ...
-Selecting previously unselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-8_mips.deb) ...
-Selecting previously unselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-8_mips.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_mips.deb) ...
+Selecting previously unselected package libreadline6-dev:mips.
+Unpacking libreadline6-dev:mips (from .../libreadline6-dev_6.2+dfsg-0.1_mips.deb) ...
+Selecting previously unselected package libreadline-dev:mips.
+Unpacking libreadline-dev:mips (from .../libreadline-dev_6.2+dfsg-0.1_mips.deb) ...
Selecting previously unselected package zip.
-Unpacking zip (from .../archives/zip_3.0-4_mips.deb) ...
+Unpacking zip (from .../archives/zip_3.0-7_mips.deb) ...
Selecting previously unselected package unzip.
-Unpacking unzip (from .../archives/unzip_6.0-6_mips.deb) ...
+Unpacking unzip (from .../archives/unzip_6.0-9_mips.deb) ...
Selecting previously unselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-6_all.deb) ...
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
Selecting previously unselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_mips.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_mips.deb) ...
Selecting previously unselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.11-1_mips.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_mips.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.15.0-1_mips.deb) ...
+Unpacking r-base-core (from .../r-base-core_3.0.1-1_mips.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.15.0-1_all.deb) ...
-Setting up libpipeline1 (1.2.1-1) ...
-Setting up libmagic1 (5.11-1) ...
-Setting up libpcre3 (1:8.30-4) ...
-Setting up libexpat1 (2.1.0-1) ...
-Setting up libfreetype6 (2.4.9-1) ...
-Setting up ucf (3.0025+nmu2) ...
-Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3.1) ...
-Setting up libfontconfig1 (2.8.0-3.1) ...
-Setting up libpixman-1-0 (0.24.4-1) ...
-Setting up libpng12-0 (1.2.49-1) ...
-Setting up libxau6 (1:1.0.7-1) ...
-Setting up libxdmcp6 (1:1.1.0-4) ...
-Setting up libxcb1 (1.8.1-1) ...
-Setting up libx11-data (2:1.4.4-4) ...
-Setting up libx11-6 (2:1.4.4-4) ...
-Setting up libxcb-render0 (1.8.1-1) ...
-Setting up libxcb-shm0 (1.8.1-1) ...
-Setting up libxrender1 (1:0.9.6-2) ...
-Setting up libcairo2 (1.12.0-2) ...
-Setting up libffi5 (3.0.10-3) ...
-Setting up libglib2.0-0 (2.32.0-4) ...
+Unpacking r-base-dev (from .../r-base-dev_3.0.1~20130512-1_all.deb) ...
+Setting up libpipeline1:mips (1.2.3-1) ...
+Setting up groff-base (1.22.2-2) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.3-6) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:mips (0.18.1.1-10) ...
+Setting up libmagic1:mips (1:5.14-1) ...
+Setting up libxml2:mips (2.8.0+dfsg1-7+nmu1) ...
+Setting up libexpat1:mips (2.1.0-3) ...
+Setting up libfreetype6:mips (2.4.9-1.1) ...
+Setting up ucf (3.0025+nmu3) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:mips (2.9.0-7.1) ...
+Setting up libpixman-1-0:mips (0.26.0-4) ...
+Setting up libpng12-0:mips (1.2.49-4) ...
+Setting up libxau6:mips (1:1.0.7-1) ...
+Setting up libxdmcp6:mips (1:1.1.1-1) ...
+Setting up libxcb1:mips (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:mips (2:1.5.0-1) ...
+Setting up libxcb-render0:mips (1.8.1-2) ...
+Setting up libxcb-shm0:mips (1.8.1-2) ...
+Setting up libxext6:mips (2:1.3.1-2) ...
+Setting up libxrender1:mips (1:0.9.7-1) ...
+Setting up libcairo2:mips (1.12.14-4) ...
+Setting up libffi6:mips (3.0.13-4) ...
+Setting up libglib2.0-0:mips (2.36.1-2build1) ...
No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-7) ...
-Setting up libcroco3 (0.6.5-1) ...
-Setting up libdatrie1 (0.2.5-3) ...
-Setting up libgfortran3 (4.7.0-2) ...
-Setting up libgomp1 (4.7.0-2) ...
-Setting up x11-common (1:7.6+12) ...
+Setting up libcroco3:mips (0.6.8-2) ...
+Setting up libdatrie1:mips (0.2.6-2) ...
+Setting up libunistring0:mips (0.9.3-5) ...
+Setting up libgettextpo0:mips (0.18.1.1-10) ...
+Setting up libgfortran3:mips (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6 (2:1.0.8-2) ...
-Setting up libjpeg8 (8d-1) ...
-Setting up libthai-data (0.1.17-1) ...
-Setting up libthai0 (0.1.17-1) ...
-Setting up libxft2 (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3.1) ...
-Cleaning up old fontconfig caches... done.
+Setting up libice6:mips (2:1.0.8-2) ...
+Setting up libjpeg8:mips (8d-1) ...
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:mips (0.1.19-2) ...
+Setting up libxft2:mips (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.30.0-1) ...
-Setting up libpcrecpp0 (1:8.30-4) ...
-Setting up libsm6 (2:1.2.1-2) ...
-Setting up libtiff4 (3.9.6-2) ...
-Setting up libunistring0 (0.9.3-5) ...
-Setting up libxext6 (2:1.3.0-3) ...
-Setting up libxss1 (1:1.2.1-2) ...
-Setting up libxt6 (1:1.1.1-2) ...
-Setting up bsdmainutils (9.0.1) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
-Building database of manual pages ...
-Setting up gcc-4.6-base (4.6.3-3) ...
-Setting up cpp-4.6 (4.6.3-3) ...
-Setting up gcc-4.6 (4.6.3-3) ...
-Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.109) ...
-Setting up cpp (4:4.6.3-4) ...
+Setting up libpango1.0-0:mips (1.30.0-1) ...
+Setting up libpaper1:mips (1.1.24+nmu2) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpcrecpp0:mips (1:8.31-2) ...
+Setting up libsm6:mips (2:1.2.1-2) ...
+Setting up libjbig0:mips (2.0-2) ...
+Setting up libtiff5:mips (4.0.2-6) ...
+Setting up libxss1:mips (1:1.2.2-1) ...
+Setting up libxt6:mips (1:1.1.3-1) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-5) ...
+Setting up libasprintf-dev:mips (0.18.1.1-10) ...
+Setting up libgettextpo-dev:mips (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120410) ...
-Setting up dpatch (2.0.35) ...
-Setting up gcc (4:4.6.3-4) ...
-Setting up gfortran-4.6 (4.6.3-3) ...
-Setting up gfortran (4:4.6.3-4) ...
-update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.6-1) ...
-Setting up libjpeg8-dev (8d-1) ...
-Setting up liblapack3gf (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev (5.9-6) ...
-Setting up libncurses5-dev (5.9-6) ...
-Setting up libpaper1 (1.1.24+nmu1) ...
-
-Creating config file /etc/papersize with new version
-Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcre3-dev (1:8.30-4) ...
-Setting up zlib1g-dev (1:1.2.6.dfsg-2) ...
-Setting up libpng12-dev (1.2.49-1) ...
-Setting up libreadline6-dev (6.2-8) ...
-Setting up libreadline-dev (6.2-8) ...
-Setting up zip (3.0-4) ...
-Setting up unzip (6.0-6) ...
-Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
-Setting up tcl8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.15.0-1) ...
-Setting R_PAPERSIZE_USER default to 'a4'
+Setting up debhelper (9.20130516) ...
+Setting up gfortran-4.6 (4.6.4-2) ...
+Setting up gfortran (4:4.6.3-8) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:mips (1.0.6-4) ...
+Setting up libjpeg8-dev:mips (8d-1) ...
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:mips (5.9+20130504-1) ...
+Setting up libncurses5-dev:mips (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:mips (1:8.31-2) ...
+Setting up zlib1g-dev:mips (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:mips (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:mips (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.1-1) ...
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.15.0-1) ...
-Setting up g++-4.6 (4.6.3-3) ...
-Setting up libstdc++6-4.6-dev (4.6.3-3) ...
+Setting up r-base-dev (3.0.1~20130512-1) ...
+Processing triggers for libc-bin ...
+ldconfig deferred processing now taking place
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 58 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-sb1-bcm91250a mips (mips64)
-Toolchain package versions: binutils_2.22-5 dpkg-dev_1.16.1.2 g++-4.6_4.6.3-3 gcc-4.6_4.6.3-3 libc6-dev_2.13-24 libstdc++6_4.7.0-2 libstdc++6-4.6-dev_4.6.3-3 linux-libc-dev_3.2.1-2
-Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-5 bsdmainutils_9.0.1 bsdutils_1:2.20.1-1.2 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.109 coreutils_8.13-3 cpp_4:4.6.3-4 cpp-4.6_4.6.3-3 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_9.20120410 debian-archive-keyring_2010.08.28 debianutils_4.1 diffutils_1:3.2-1 dpatch_2.0.35 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.11-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.2-4 g++-4.6_4.6.3-3 gcc_4:4.6.3-4 gcc-4.6_4.6.3-3 gcc-4.6-base_4.6.3-3 gcc-4.7-base_4.7.0-2 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.3-4 gfortran-4.6_4.6.3-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.10-1 groff-base_1.21-7 gzip_1.4-2 hostname_3.10 html2text_1.3.2a-15 initscripts_2.88dsf-18 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-1.2 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-24 libc-dev-bin_2.13-24 libc6_2.13-24 libc6-dev_2.13-24 libcairo2_1.12.0-2 libclass-isa-perl_0.36-3 libcomerr2_1.42-1 libcroco3_0.6.5-1 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libexpat1_2.1.0-1 libffi5_3.0.10-3 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-2 libgdbm3_1.8.3-10 libgfortran3_4.7.0-2 libglib2.0-0_2.32.0-4 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.7.0-2 libice6_2:1.0.8-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-1.2 libmpc2_0.9-4 libmpfr4_3.1.0-3 libncurses5_5.9-6 libncurses5-dev_5.9-6 libpam-modules_1.1.3-6 libpam-modules-bin_1.1.3-6 libpam-runtime_1.1.3-6 libpam0g_1.1.3-6 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_1:8.30-4 libpcre3-dev_1:8.30-4 libpcrecpp0_1:8.30-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.49-1 libpng12-dev_1.2.49-1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.0-4.1 libsepol1_2.1.0-1.2 libslang2_2.2.4-5 libsm6_2:1.2.1-2 libss2_1.42-1 libstdc++6_4.7.0-2 libstdc++6-4.6-dev_4.6.3-3 libswitch-perl_2.16-2 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-6 libtinfo5_5.9-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-1.2 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.2.1-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28.1 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-16 mount_2.20.1-1.2 multiarch-support_2.13-24 ncurses-base_5.9-4 ncurses-bin_5.9-6 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-3 perl_5.14.2-6 perl-base_5.14.2-6 perl-modules_5.14.2-6 po-debconf_1.0.16+nmu2 r-base-core_2.15.0-1 r-base-dev_2.15.0-1 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p1-3 sysv-rc_2.88dsf-18 sysvinit_2.88dsf-18 sysvinit-utils_2.88dsf-18 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2011n-2 ucf_3.0025+nmu2 unzip_6.0-6 util-linux_2.20.1-1.2 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
+Kernel: Linux 3.2.0-0.bpo.4-octeon mips (mips64)
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.6_4.6.4-2 gcc-4.6_4.6.4-2 libc6-dev_2.17-2 libstdc++6_4.8.0-7 libstdc++6-4.6-dev_4.6.4-2 linux-libc-dev_3.2.41-2
+Package versions: apt_0.9.8.1 base-files_7.2 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.4 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.20-3 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2 dash_0.5.7-3 debconf_1.5.50 debfoster_2.7-1.2 debhelper_9.20130516 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.19-2 file_1:5.14-1 findutils_4.4.2-5 fontconfig_2.9.0-7.1 fontconfig-config_2.9.0-7.1 fonts-dejavu-core_2.33+svn2514-3 g++_4:4.6.3-8 g++-4.6_4.6.4-2 gcc_4:4.6.3-8 gcc-4.6_4.6.4-2 gcc-4.6-base_4.6.4-2 gcc-4.7-base_4.7.3-4 gcc-4.8-base_4.8.0-7 gettext_0.18.1.1-10 gettext-base_0.18.1.1-10 gfortran_4:4.6.3-8 gfortran-4.6_4.6.4-2 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.14-1 groff-base_1.22.2-2 gzip_1.5-1.1 hostname_3.12 html2text_1.3.2a-15 initscripts_2.88dsf-41 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.8.1 libasprintf-dev_0.18.1.1-10 libasprintf0c2_0.18.1.1-10 libattr1_1:2.4.46-8 libblas-dev_1.2.20110419-5 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.4 libbz2-1.0_1.0.6-4 libbz2-dev_1.0.6-4 libc-bin_2.17-2 libc-dev-bin_2.17-2 libc6_2.17-2 libc6-dev_2.17-2 libcairo2_1.12.14-4 libcap2_1:2.22-1.2 libclass-isa-perl_0.36-5 libcomerr2_1.42.5-1.1 libcroco3_0.6.8-2 libdatrie1_0.2.6-2 libdb5.1_5.1.29-5 libdpkg-perl_1.16.10 libexpat1_2.1.0-3 libffi6_3.0.13-4 libfile-fcntllock-perl_0.14-2 libfontconfig1_2.9.0-7.1 libfreetype6_2.4.9-1.1 libgc1c2_1:7.1-9.1 libgcc1_1:4.8.0-7 libgdbm3_1.8.3-11 libgettextpo-dev_0.18.1.1-10 libgettextpo0_0.18.1.1-10 libgfortran3_4.8.0-7 libglib2.0-0_2.36.1-2build1 libgmp10_2:5.1.1+dfsg-3 libgomp1_4.8.0-7 libice6_2:1.0.8-2 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.4.2+dfsg-1 liblapack3_3.4.2+dfsg-1 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-1 libmount1_2.20.1-5.4 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libncurses5_5.9+20130504-1 libncurses5-dev_5.9+20130504-1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.31-2 libpcre3-dev_1:8.31-2 libpcrecpp0_1:8.31-2 libpipeline1_1.2.3-1 libpixman-1-0_0.26.0-4 libpng12-0_1.2.49-4 libpng12-dev_1.2.49-4 libreadline-dev_6.2+dfsg-0.1 libreadline6_6.2+dfsg-0.1 libreadline6-dev_6.2+dfsg-0.1 libselinux1_2.1.13-1 libsemanage-common_2.1.10-1 libsemanage1_2.1.10-1 libsepol1_2.1.9-1 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libss2_1.42.5-1.1 libstdc++6_4.8.0-7 libstdc++6-4.6-dev_4.6.4-2 libswitch-perl_2.16-2 libthai-data_0.1.19-2 libthai0_0.1.19-2 libtiff5_4.0.2-6 libtimedate-perl_1.2000-1 libtinfo-dev_5.9+20130504-1 libtinfo5_5.9+20130504-1 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23+nmu1 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.4 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-2 libxcb-shm0_1.8.1-2 libxcb1_1.8.1-2 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-7+nmu1 libxrender1_1:0.9.7-1 libxss1_1:1.2.2-1 libxt6_1:1.1.3-1 linux-libc-dev_3.2.41-2 login_1:4.1.5.1-1 lsb-base_4.1+Debian11 make_3.81-8.2 man-db_2.6.3-6 mawk_1.3.3-17 mount_2.20.1-5.4 multiarch-support_2.17-2 ncurses-base_5.9+20130504-1 ncurses-bin_5.9+20130504-1 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-21 perl-base_5.14.2-21 perl-modules_5.14.2-21 po-debconf_1.0.16+nmu2 r-base-core_3.0.1-1 r-base-dev_3.0.1~20130512-1 readline-common_6.2+dfsg-0.1 sed_4.2.2-1 sensible-utils_0.0.7 sudo_1.8.5p2-1+nmu1 sysv-rc_2.88dsf-41 sysvinit_2.88dsf-41 sysvinit-utils_2.88dsf-41 tar_1.26+dfsg-5 tcl8.5_8.5.11-2 tk8.5_8.5.11-2 ttf-dejavu-core_2.33+svn2514-3 tzdata_2013b-2 ucf_3.0025+nmu3 unzip_6.0-9 util-linux_2.20.1-5.4 x11-common_1:7.7+3 xdg-utils_1.1.0~rc1+git20111210-7 xz-utils_5.1.1alpha+20120614-2 zip_3.0-7 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -632,13 +565,13 @@ Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binu
Unpack source
─────────────
-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Apr 12 02:45:32 2012 UTC using RSA key ID 2295D502
+gpgv: keyblock resource `/home/buildd2/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Thu May 16 14:46:42 2013 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.12.0~dfsg-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.12.0~dfsg
-dpkg-source: info: unpacking r-bioc-limma_3.12.0~dfsg.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.12.0~dfsg-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.16.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.16.3~dfsg
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg-1.debian.tar.gz
Check disc space
────────────────
@@ -648,27 +581,12 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.12.0~dfsg-1
- dpkg-source --before-build r-bioc-limma-3.12.0~dfsg
+dpkg-buildpackage: source version 3.16.3~dfsg-1
+ dpkg-source --before-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: host architecture mips
fakeroot debian/rules clean
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
-/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mips-IcD0GQ/r-bioc-limma-3.12.0~dfsg'
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mips-IcD0GQ/r-bioc-limma-3.12.0~dfsg'
-if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "reverse-patches" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-for dir in debian/patches ; do \
- rm -f $dir/*.log ; \
- done
dh_clean
rm -f debian/r-bioc-limma.substvars
rm -f debian/r-bioc-limma.*.debhelper
@@ -688,27 +606,10 @@ if test -d src; then \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
- debian/rules build
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+ debian/rules build-arch
test -x debian/rules
mkdir -p "."
-/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mips-IcD0GQ/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mips-IcD0GQ/r-bioc-limma-3.12.0~dfsg'
-if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mips-IcD0GQ/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mips-IcD0GQ/r-bioc-limma-3.12.0~dfsg'
fakeroot debian/rules binary-arch
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
@@ -720,26 +621,26 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
install -d debian/r-bioc-limma/usr/lib/R/site-library
-echo "R:Depends=r-base-core (>= 2.15.0-1)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 3.0.1~20130512-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mips-IcD0GQ/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd2-r-bioc-limma_3.16.3~dfsg-1-mips-mFsuhn/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mips-IcD0GQ/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd2-r-bioc-limma_3.16.3~dfsg-1-mips-mFsuhn/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mips-IcD0GQ/r-bioc-limma-3.12.0~dfsg/src'
+make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.16.3~dfsg-1-mips-mFsuhn/r-bioc-limma-3.16.3~dfsg/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g0 -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mips-IcD0GQ/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mips-IcD0GQ/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mips-IcD0GQ/r-bioc-limma-3.12.0~dfsg/src'
-installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mips-IcD0GQ/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.16.3~dfsg-1-mips-mFsuhn/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.16.3~dfsg-1-mips-mFsuhn/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.16.3~dfsg-1-mips-mFsuhn/r-bioc-limma-3.16.3~dfsg/src'
+installing to /build/buildd2-r-bioc-limma_3.16.3~dfsg-1-mips-mFsuhn/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -747,22 +648,27 @@ installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mips-IcD0GQ/r-bioc-limma-
*** installing help indices
** building package indices
** installing vignettes
- 'limma.Rnw'
** testing if installed package can be loaded
-
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mips-IcD0GQ/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mips-IcD0GQ/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mips-IcD0GQ/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd2-r-bioc-limma_3.16.3~dfsg-1-mips-mFsuhn/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd2-r-bioc-limma_3.16.3~dfsg-1-mips-mFsuhn/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd2-r-bioc-limma_3.16.3~dfsg-1-mips-mFsuhn/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mips-IcD0GQ/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd2-r-bioc-limma_3.16.3~dfsg-1-mips-mFsuhn/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mips-IcD0GQ/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd2-r-bioc-limma_3.16.3~dfsg-1-mips-mFsuhn/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/CITATION
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/doc/*
dh_installdocs -pr-bioc-limma
install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd2-r-bioc-limma_3.16.3~dfsg-1-mips-mFsuhn/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/doc/r-bioc-limma \;
+ cp -a debian/README.test debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ chown -R 0:0 debian/r-bioc-limma/usr/share/doc
+ chmod -R go=rX debian/r-bioc-limma/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-limma/usr/share/doc
install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
@@ -794,9 +700,9 @@ dh_strip -pr-bioc-limma
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
cd debian/r-bioc-limma
- chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
- gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
- cd '/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mips-IcD0GQ/r-bioc-limma-3.12.0~dfsg'
+ chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save
+ gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save
+ cd '/build/buildd2-r-bioc-limma_3.16.3~dfsg-1-mips-mFsuhn/r-bioc-limma-3.16.3~dfsg'
dh_fixperms -pr-bioc-limma
find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -826,62 +732,79 @@ dh_md5sums -pr-bioc-limma
chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
dpkg-deb --build debian/r-bioc-limma ..
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.12.0~dfsg-1_mips.deb'.
- dpkg-genchanges -B -mDebian Build Daemon <buildd_mips-ball at buildd.debian.org> >../r-bioc-limma_3.12.0~dfsg-1_mips.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.16.3~dfsg-1_mips.deb'.
+ dpkg-genchanges -B -mmips Build Daemon (lucatelli) <buildd_mips-lucatelli2 at buildd.debian.org> >../r-bioc-limma_3.16.3~dfsg-1_mips.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.12.0~dfsg
+ dpkg-source --after-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120412-0501
+Build finished at 20130517-1439
-r-bioc-limma_3.12.0~dfsg-1_mips.changes:
+r-bioc-limma_3.16.3~dfsg-1_mips.changes:
Format: 1.8
-Date: Thu, 12 Apr 2012 11:40:40 +0900
+Date: Thu, 16 May 2013 15:16:13 +0200
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: mips
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
Distribution: sid
Urgency: low
-Maintainer: Debian Build Daemon <buildd_mips-ball at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Maintainer: mips Build Daemon (lucatelli) <buildd_mips-lucatelli2 at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.12.0~dfsg-1) unstable; urgency=low
+ r-bioc-limma (3.16.3~dfsg-1) unstable; urgency=low
.
[ Charles Plessy ]
- 2d3420e Imported Upstream version 3.12.0~dfsg
- 4bbb8e4 Document LIMMA's copyright as a whole.
+ ff8c6db Imported Upstream version 3.12.1~dfsg
+ b4f097e Effective license is GPL-2, without the '+', as R is GPL-2.
.
[ Andreas Tille ]
- 8a61a4c Obtain references from inst/CITATION
+ * Imported new upstream version 3.16.3~dfsg
+ * debian/control
+ - added myself to Uploaders
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - Fake normalisation as it is done by `cme fix dpkg-control`
+ (the command did actually no change - the control file was
+ brought into shape manually)
+ - Removed versioned dependency of r-base-dev
+ * debian/copyright:
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - checked new upstream version and bumped version number
+ - Add years to Copyright fields
+ * debian/rules: Remove executable flag from doc files
+ * debian/source/format: Add explicit source format specification
Checksums-Sha1:
- 1edf8622d3f6c1812c33320e3945b7bf61773196 807418 r-bioc-limma_3.12.0~dfsg-1_mips.deb
+ 9acc5a114a331ab99d1180b8edb854635a9030e0 1616028 r-bioc-limma_3.16.3~dfsg-1_mips.deb
Checksums-Sha256:
- f86fb0db3bbf93f0adbfefc6ffa098b083dbccf2d9b160e55820f39f685d7023 807418 r-bioc-limma_3.12.0~dfsg-1_mips.deb
+ 2adbf337c3eb2bce21d4f881f76546b0ca4255be61d4cf57722281fba7bcc237 1616028 r-bioc-limma_3.16.3~dfsg-1_mips.deb
Files:
- c0650fcfa558cce7ff8e3c5b2420b764 807418 gnu-r optional r-bioc-limma_3.12.0~dfsg-1_mips.deb
+ 38f7a880c0d02bbc7ff593894ef483a5 1616028 gnu-r optional r-bioc-limma_3.16.3~dfsg-1_mips.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.12.0~dfsg-1_mips.deb
+r-bioc-limma_3.16.3~dfsg-1_mips.deb
───────────────────────────────────
new debian package, version 2.0.
- size 807418 bytes: control archive= 1542 bytes.
- 772 bytes, 16 lines control
- 2290 bytes, 30 lines md5sums
+ size 1616028 bytes: control archive= 1677 bytes.
+ 781 bytes, 16 lines control
+ 2621 bytes, 34 lines md5sums
Package: r-bioc-limma
- Version: 3.12.0~dfsg-1
+ Version: 3.16.3~dfsg-1
Architecture: mips
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 985
- Depends: libc6 (>= 2.2), r-base-core (>= 2.15.0-1)
+ Installed-Size: 1847
+ Depends: libc6 (>= 2.2), r-base-core (>= 3.0.1~20130512-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -893,51 +816,56 @@ r-bioc-limma_3.12.0~dfsg-1_mips.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2012-04-12 05:01 ./
-drwxr-xr-x root/root 0 2012-04-12 05:01 ./usr/
-drwxr-xr-x root/root 0 2012-04-12 05:01 ./usr/share/
-drwxr-xr-x root/root 0 2012-04-12 05:01 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-04-12 05:01 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 2457 2012-04-12 04:59 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 27998 2012-03-30 22:32 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 264 2012-04-12 04:59 ./usr/share/doc/r-bioc-limma/README.Debian
--rw-r--r-- root/root 683 2012-04-12 04:59 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
-drwxr-xr-x root/root 0 2012-04-12 05:00 ./usr/lib/
-drwxr-xr-x root/root 0 2012-04-12 05:00 ./usr/lib/R/
-drwxr-xr-x root/root 0 2012-04-12 05:01 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2012-04-12 05:01 ./usr/lib/R/site-library/limma/
-drwxr-xr-x root/root 0 2012-04-12 05:00 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 3827 2012-04-12 05:00 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 383 2012-04-12 05:00 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 202046 2012-04-12 05:00 ./usr/lib/R/site-library/limma/R/limma.rdb
-drwxr-xr-x root/root 0 2012-04-12 05:01 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 91993 2012-04-12 05:00 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 1711 2012-04-12 05:00 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rwxr-xr-x root/root 673 2012-04-12 05:00 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 42743 2012-04-12 05:00 ./usr/lib/R/site-library/limma/doc/limma.pdf
-drwxr-xr-x root/root 0 2012-04-12 05:01 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 220 2012-04-12 05:01 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 5727 2012-04-12 05:01 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 6157 2012-04-12 05:01 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 2943 2012-04-12 05:01 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 521 2012-04-12 05:01 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 1055 2012-04-12 05:00 ./usr/lib/R/site-library/limma/Meta/package.rds
-drwxr-xr-x root/root 0 2012-04-12 05:00 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 3359 2012-04-12 05:00 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 1371 2012-04-12 05:00 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 2431 2012-04-12 05:00 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 6317 2012-04-12 05:00 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 472530 2012-04-12 05:00 ./usr/lib/R/site-library/limma/help/limma.rdb
-drwxr-xr-x root/root 0 2012-04-12 05:00 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 1179 2012-04-12 05:00 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 35015 2012-04-12 05:00 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 9754 2012-04-12 05:01 ./usr/lib/R/site-library/limma/INDEX
--rwxr-xr-x root/root 1230 2012-04-12 05:00 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2012-04-12 05:01 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 10704 2012-04-12 05:01 ./usr/lib/R/site-library/limma/libs/limma.so
--rw-r--r-- root/root 3989 2012-04-12 05:00 ./usr/lib/R/site-library/limma/NEWS.Rd
--rw-r--r-- root/root 969 2012-04-12 05:00 ./usr/lib/R/site-library/limma/DESCRIPTION
--rw-r--r-- root/root 1901 2012-04-12 05:00 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2013-05-17 14:38 ./
+drwxr-xr-x root/root 0 2013-05-17 14:38 ./usr/
+drwxr-xr-x root/root 0 2013-05-17 14:36 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-17 14:36 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-17 14:38 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-17 14:37 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 2046 2013-05-17 14:36 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 963 2013-05-17 14:36 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2013-05-17 14:36 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 4106 2013-05-17 14:36 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 1056 2013-05-17 14:36 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 206552 2013-05-17 14:36 ./usr/lib/R/site-library/limma/R/limma.rdb
+drwxr-xr-x root/root 0 2013-05-17 14:37 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 6703 2013-05-17 14:37 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 3418 2013-05-17 14:37 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 2567 2013-05-17 14:37 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 1396 2013-05-17 14:36 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 494336 2013-05-17 14:37 ./usr/lib/R/site-library/limma/help/limma.rdb
+drwxr-xr-x root/root 0 2013-05-17 14:37 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2013-05-17 14:37 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 37337 2013-05-17 14:37 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 11214 2013-05-17 14:36 ./usr/lib/R/site-library/limma/NEWS.Rd
+-rw-r--r-- root/root 990 2013-05-17 14:36 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2013-05-17 14:37 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 806089 2013-05-17 14:36 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 673 2013-05-17 14:36 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 45597 2013-05-17 14:36 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 102936 2013-05-17 14:36 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 1711 2013-05-17 14:36 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+drwxr-xr-x root/root 0 2013-05-17 14:38 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10704 2013-05-17 14:38 ./usr/lib/R/site-library/limma/libs/limma.so
+-rw-r--r-- root/root 10085 2013-05-17 14:37 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2013-05-17 14:37 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 3089 2013-05-17 14:37 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 219 2013-05-17 14:37 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 1068 2013-05-17 14:36 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 541 2013-05-17 14:37 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 5944 2013-05-17 14:37 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 6375 2013-05-17 14:37 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+drwxr-xr-x root/root 0 2013-05-17 14:38 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-17 14:38 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-17 14:38 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 1153 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 31097 2013-05-02 00:02 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 2605 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 437 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.test
+drwxr-xr-x root/root 0 2013-05-17 14:38 ./usr/share/doc/r-bioc-limma/tests/
+-rw-r--r-- root/root 2097 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.R.gz
+-rw-r--r-- root/root 14649 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save.gz
+-rw-r--r-- root/root 264 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.Debian
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -951,55 +879,57 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-mips-sbuild-630c4b5b-e203-46f1-8e4a-fe4e56945a3e/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mips-IcD0GQ
+Purging /var/lib/schroot/mount/sid-mips-sbuild-63d3f535-faf2-4514-a9d5-9d0f0f970ba9/build/buildd2-r-bioc-limma_3.16.3~dfsg-1-mips-mFsuhn
Not cleaning session: cloned chroot in use
+Can't open average time db /var/lib/sbuild/avg-build-times
+Can't open average space db /var/lib/sbuild/avg-build-space
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: mips
-Build-Space: 3272
-Build-Time: 110
+Build-Space: 5884
+Build-Time: 255
Distribution: sid
-Install-Time: 322
-Job: r-bioc-limma_3.12.0~dfsg-1
+Install-Time: 218
+Job: r-bioc-limma_3.16.3~dfsg-1
Package: r-bioc-limma
-Package-Time: 597
-Source-Version: 3.12.0~dfsg-1
-Space: 3272
+Package-Time: 638
+Source-Version: 3.16.3~dfsg-1
+Space: 5884
Status: successful
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120412-0501
-Build needed 00:09:57, 3272k disc space
-Signature with key 'E348DA45' requested:
+Finished at 20130517-1439
+Build needed 00:10:38, 5884k disc space
+Signature with key 'A2DB4074' requested:
-From buildd at eysler.debian.org Thu Apr 12 05:09:35 2012
+From buildd at eysler.debian.org Fri May 17 18:31:24 2013
Return-path: <buildd at eysler.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at eysler.debian.org>)
- id 1SICHn-0001fs-2M
- for logs at buildd.debian.org; Thu, 12 Apr 2012 05:09:35 +0000
+ id 1UdPR5-0005DQ-Lu
+ for logs at buildd.debian.org; Fri, 17 May 2013 18:31:24 +0000
Received: from eysler.debian.org ([2001:858:2:2:1a1a:0:563b:7698])
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- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at eysler.debian.org>)
- id 1SICHm-0002uY-1a
- for logs at buildd.debian.org; Thu, 12 Apr 2012 05:09:34 +0000
+ id 1UdPR4-0000ij-Ke
+ for logs at buildd.debian.org; Fri, 17 May 2013 18:31:22 +0000
Received: from buildd by eysler.debian.org with local (Exim 4.72)
- (envelope-from <buildd at eysler.debian.org>) id 1SICHj-0003MN-GL
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-Date: Thu, 12 Apr 2012 05:09:31 +0000
-Message-Id: <E1SICHj-0003MN-GL at eysler.debian.org>
+ (envelope-from <buildd at eysler.debian.org>) id 1UdPR3-0007Hr-Oy
+ for logs at buildd.debian.org; Fri, 17 May 2013 18:31:21 +0000
+Date: Fri, 17 May 2013 18:31:21 +0000
+Message-Id: <E1UdPR3-0007Hr-Oy at eysler.debian.org>
From: buildd on eysler <buildd at eysler.debian.org>
To: logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.12.0~dfsg-1 on mipsel
+Subject: Log for successful build of r-bioc-limma_3.16.3~dfsg-1 on mipsel
(dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
@@ -1008,40 +938,35 @@ Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on eysler.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.12.0~dfsg-1 (mipsel) 12 Apr 2012 04:59 ║
+║ r-bioc-limma 3.16.3~dfsg-1 (mipsel) 17 May 2013 18:21 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.12.0~dfsg-1
-Source Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
+Source Version: 3.16.3~dfsg-1
Architecture: mipsel
-Get:1 http://ftp.at.debian.org unstable InRelease [208 kB]
-Get:2 http://incoming.debian.org unstable InRelease [208 kB]
-Get:3 http://ftp.at.debian.org unstable/main Sources [6221 kB]
-Ign http://incoming.debian.org InRelease
-Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org Release [1601 B]
-Get:6 http://incoming.debian.org unstable/main Sources [6221 kB]
-Get:7 http://ftp.at.debian.org unstable/contrib Sources [54.5 kB]
-Get:8 http://ftp.at.debian.org unstable/non-free Sources [97.7 kB]
-Get:9 http://ftp.at.debian.org unstable/main mipsel Packages [5836 kB]
-Get:10 http://incoming.debian.org unstable/contrib Sources [54.5 kB]
-Get:11 http://incoming.debian.org unstable/non-free Sources [97.7 kB]
-Get:12 http://incoming.debian.org unstable/main mipsel Packages [5836 kB]
-Get:13 http://ftp.at.debian.org unstable/contrib mipsel Packages [37.3 kB]
-Ign http://ftp.at.debian.org unstable/contrib TranslationIndex
-Get:14 http://ftp.at.debian.org unstable/main TranslationIndex [2223 B]
-Get:15 http://ftp.at.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:16 http://ftp.at.debian.org unstable/main Translation-en [3936 kB]
-Get:17 http://incoming.debian.org unstable/contrib mipsel Packages [37.3 kB]
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:18 http://incoming.debian.org unstable/main TranslationIndex [2223 B]
-Get:19 http://incoming.debian.org Sources [42.8 kB]
-Get:20 http://incoming.debian.org Packages [744 kB]
-Get:21 http://incoming.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:22 http://incoming.debian.org unstable/main Translation-en [3936 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 33.6 MB in 1min 38s (342 kB/s)
+Get:1 http://ftp.at.debian.org unstable Release.gpg [1571 B]
+Get:2 http://ftp.at.debian.org unstable Release [203 kB]
+Get:3 http://incoming.debian.org unstable Release.gpg [1571 B]
+Get:4 http://ftp.at.debian.org unstable/main Sources [6727 kB]
+Get:5 http://incoming.debian.org buildd-unstable Release.gpg [1571 B]
+Get:6 http://incoming.debian.org unstable Release [203 kB]
+Get:7 http://incoming.debian.org buildd-unstable Release [109 kB]
+Get:8 http://incoming.debian.org unstable/main Sources [6727 kB]
+Get:9 http://ftp.at.debian.org unstable/contrib Sources [53.7 kB]
+Get:10 http://ftp.at.debian.org unstable/non-free Sources [103 kB]
+Get:11 http://ftp.at.debian.org unstable/main mipsel Packages [6199 kB]
+Get:12 http://incoming.debian.org unstable/contrib Sources [53.7 kB]
+Get:13 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:14 http://incoming.debian.org unstable/main mipsel Packages [6199 kB]
+Get:15 http://incoming.debian.org unstable/contrib mipsel Packages [37.4 kB]
+Get:16 http://incoming.debian.org buildd-unstable/main Sources [97.6 kB]
+Get:17 http://ftp.at.debian.org unstable/contrib mipsel Packages [37.4 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib Sources [14 B]
+Get:19 http://incoming.debian.org buildd-unstable/non-free Sources [2211 B]
+Get:20 http://incoming.debian.org buildd-unstable/main mipsel Packages [82.9 kB]
+Get:21 http://incoming.debian.org buildd-unstable/contrib mipsel Packages [14 B]
+Fetched 26.9 MB in 1min 43s (260 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -1062,11 +987,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 288 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (dsc) [2030 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (tar) [283 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (diff) [3098 B]
-Fetched 288 kB in 1s (207 kB/s)
+Need to get 1058 kB of source archives.
+Get:1 http://ftp.at.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (dsc) [1409 B]
+Get:2 http://ftp.at.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (tar) [1052 kB]
+Get:3 http://ftp.at.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (diff) [4167 B]
+Fetched 1058 kB in 0s (2213 kB/s)
Download complete and in download only mode
Check arch
@@ -1079,522 +1004,509 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.2-1)
+build-essential: already installed (11.6)
+fakeroot: already installed (1.18.4-2)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 68 not upgraded.
+The following packages were automatically installed and are no longer required:
+ groff-base libpipeline1 man-db
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 48 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 68 not upgraded.
+The following packages were automatically installed and are no longer required:
+ groff-base libpipeline1 man-db
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 48 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev
Checking for already installed dependencies...
-base-files: already installed (6.5)
-base-passwd: already installed (3.5.24)
-bash: already installed (4.2-1)
-coreutils: already installed (8.13-3)
-dash: already installed (0.5.7-2)
-debianutils: already installed (4.2.1)
-diffutils: already installed (1:3.2-1)
-dpkg: already installed (1.16.1.2)
-e2fsprogs: already installed (1.42-1)
-findutils: already installed (4.4.2-4)
-grep: already installed (2.10-1)
-gzip: already installed (1.4-2)
-hostname: already installed (3.10)
-ncurses-base: already installed (5.9-4)
-ncurses-bin: already installed (5.9-4)
-perl-base: already installed (5.14.2-7)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-22)
-sysvinit: already installed (2.88dsf-22)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-1.2)
-mount: already installed (2.20.1-1.2)
-util-linux: already installed (2.20.1-1.2)
-libc6-dev: already installed (2.13-26)
-gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
+base-files: already installed (7.1)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2+dfsg-0.1)
+bsdutils: already installed (1:2.20.1-5.3)
+coreutils: already installed (8.20-3)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1.1)
+findutils: already installed (4.4.2-5)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+libc-bin: already installed (2.13-38)
+login: already installed (1:4.1.5.1-1)
+mount: already installed (2.20.1-5.3)
+ncurses-base: already installed (5.9-10)
+ncurses-bin: already installed (5.9-10)
+perl-base: already installed (5.14.2-20)
+sed: already installed (4.2.1-10)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-0.1)
+util-linux: already installed (2.20.1-5.3)
+libc6-dev: already installed (2.13-38)
+gcc: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120410
+Using default version 9.20130516
cdbs: missing
r-base-dev: missing
-Using default version 2.15.0-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils cpp cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
- gcc gcc-4.6 gcc-4.6-base gcc-4.7-base gettext gettext-base gfortran
- gfortran-4.6 groff-base html2text intltool-debian libblas-dev libblas3gf
- libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1
- libfreetype6 libgcc1 libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5
- libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev
- libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
- libreadline-dev libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev
- libthai-data libthai0 libtiff4 libtinfo-dev libtinfo5 libunistring0 libx11-6
- libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
- libxft2 libxml2 libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf
- r-base-core tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common xdg-utils zip
- zlib1g zlib1g-dev
+ cpp-4.6 file fontconfig fontconfig-config fonts-dejavu-core g++-4.6 gcc-4.6
+ gcc-4.6-base gcc-4.8-base gettext gettext-base gfortran gfortran-4.6
+ html2text intltool-debian libasprintf-dev libasprintf0c2 libblas-dev
+ libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi6
+ libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0 libgfortran3
+ libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3
+ libmagic1 libmpc3 libncurses5 libncurses5-dev libpango1.0-0 libpaper-utils
+ libpaper1 libpcre3-dev libpcrecpp0 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libstdc++6-4.6-dev libthai-data
+ libthai0 libtiff5 libtinfo-dev libtinfo5 libunistring0 libx11-6 libx11-data
+ libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
+ libxml2 libxrender1 libxss1 libxt6 ncurses-bin po-debconf r-base-core tcl8.5
+ tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts cpp-doc gcc-4.6-locales dh-make
- curl defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-multilib
- manpages-dev autoconf automake1.9 libtool flex bison gdb gcc-doc
- gcc-4.6-multilib libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg
- libquadmath-dbg libmudflap0-dbg gettext-doc gfortran-multilib gfortran-doc
- gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
+ devscripts gcc-4.6-locales dh-make g++-4.6-multilib gcc-4.6-doc
+ libstdc++6-4.6-dbg gcc-4.6-multilib libmudflap0-4.6-dev libgcc1-dbg
+ libgomp1-dbg libquadmath-dbg libmudflap0-dbg libcloog-ppl1 libcloog-ppl0
+ libppl-c4 libppl12 libppl9 gettext-doc gfortran-multilib gfortran-doc
+ gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg ncurses-doc
ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
- r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc libmail-box-perl ess r-doc-info
+ r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
- texi2html tclreadline gvfs-bin
+ texi2html tcl-tclreadline gvfs-bin
Recommended packages:
- autotools-dev patchutils autopoint libglib2.0-data shared-mime-info libgpm2
- xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
+ autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
+ libgpm2 xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
- bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config
- gcc-4.7-base gettext gettext-base gfortran gfortran-4.6 groff-base html2text
- intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3
- libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgfortran3
- libglib2.0-0 libice6 libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf
- libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3
- libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
- libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
- libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
- libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
- libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core
- unzip x11-common xdg-utils zip zlib1g-dev
+ cdbs debhelper file fontconfig fontconfig-config fonts-dejavu-core
+ gcc-4.8-base gettext gettext-base gfortran gfortran-4.6 html2text
+ intltool-debian libasprintf-dev libasprintf0c2 libblas-dev libblas3
+ libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi6 libfontconfig1
+ libfreetype6 libgettextpo-dev libgettextpo0 libgfortran3 libglib2.0-0
+ libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1
+ libmpc3 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev
+ libpcrecpp0 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff5 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
The following packages will be upgraded:
- cpp cpp-4.6 g++-4.6 gcc gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libncurses5
- libstdc++6 libstdc++6-4.6-dev libtinfo5 ncurses-bin zlib1g
-14 upgraded, 77 newly installed, 0 to remove and 54 not upgraded.
-Need to get 74.2 MB of archives.
-After this operation, 121 MB of additional disk space will be used.
-Get:1 http://ftp.at.debian.org/debian/ unstable/main ncurses-bin mipsel 5.9-6 [329 kB]
-Get:2 http://ftp.at.debian.org/debian/ unstable/main gcc-4.7-base mipsel 4.7.0-2 [139 kB]
-Get:3 http://ftp.at.debian.org/debian/ unstable/main libgcc1 mipsel 1:4.7.0-2 [69.1 kB]
-Get:4 http://ftp.at.debian.org/debian/ unstable/main libstdc++6 mipsel 4.7.0-2 [305 kB]
-Get:5 http://ftp.at.debian.org/debian/ unstable/main libtinfo5 mipsel 5.9-6 [265 kB]
-Get:6 http://ftp.at.debian.org/debian/ unstable/main libncurses5 mipsel 5.9-6 [284 kB]
-Get:7 http://ftp.at.debian.org/debian/ unstable/main zlib1g mipsel 1:1.2.6.dfsg-2 [85.7 kB]
-Get:8 http://ftp.at.debian.org/debian/ unstable/main libpipeline1 mipsel 1.2.1-1 [36.7 kB]
-Get:9 http://ftp.at.debian.org/debian/ unstable/main libmagic1 mipsel 5.11-1 [251 kB]
-Get:10 http://ftp.at.debian.org/debian/ unstable/main libpcre3 mipsel 1:8.30-4 [245 kB]
-Get:11 http://ftp.at.debian.org/debian/ unstable/main libexpat1 mipsel 2.1.0-1 [144 kB]
-Get:12 http://ftp.at.debian.org/debian/ unstable/main libfreetype6 mipsel 2.4.9-1 [434 kB]
-Get:13 http://ftp.at.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:14 http://ftp.at.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3.1 [219 kB]
-Get:15 http://ftp.at.debian.org/debian/ unstable/main libfontconfig1 mipsel 2.8.0-3.1 [285 kB]
-Get:16 http://ftp.at.debian.org/debian/ unstable/main libpixman-1-0 mipsel 0.24.4-1 [362 kB]
-Get:17 http://ftp.at.debian.org/debian/ unstable/main libpng12-0 mipsel 1.2.49-1 [185 kB]
-Get:18 http://ftp.at.debian.org/debian/ unstable/main libxau6 mipsel 1:1.0.7-1 [18.2 kB]
-Get:19 http://ftp.at.debian.org/debian/ unstable/main libxdmcp6 mipsel 1:1.1.0-4 [22.4 kB]
-Get:20 http://ftp.at.debian.org/debian/ unstable/main libxcb1 mipsel 1.8.1-1 [41.0 kB]
-Get:21 http://ftp.at.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-4 [187 kB]
-Get:22 http://ftp.at.debian.org/debian/ unstable/main libx11-6 mipsel 2:1.4.4-4 [857 kB]
-Get:23 http://ftp.at.debian.org/debian/ unstable/main libxcb-render0 mipsel 1.8.1-1 [16.1 kB]
-Get:24 http://ftp.at.debian.org/debian/ unstable/main libxcb-shm0 mipsel 1.8.1-1 [9950 B]
-Get:25 http://ftp.at.debian.org/debian/ unstable/main libxrender1 mipsel 1:0.9.6-2 [30.2 kB]
-Get:26 http://ftp.at.debian.org/debian/ unstable/main libcairo2 mipsel 1.12.0-2 [904 kB]
-Get:27 http://ftp.at.debian.org/debian/ unstable/main libffi5 mipsel 3.0.10-3 [22.8 kB]
-Get:28 http://ftp.at.debian.org/debian/ unstable/main libglib2.0-0 mipsel 2.32.0-3 [1960 kB]
-Get:29 http://ftp.at.debian.org/debian/ unstable/main libxml2 mipsel 2.7.8.dfsg-7 [859 kB]
-Get:30 http://ftp.at.debian.org/debian/ unstable/main libcroco3 mipsel 0.6.5-1 [139 kB]
-Get:31 http://ftp.at.debian.org/debian/ unstable/main libdatrie1 mipsel 0.2.5-3 [28.1 kB]
-Get:32 http://ftp.at.debian.org/debian/ unstable/main libgfortran3 mipsel 4.7.0-2 [240 kB]
-Get:33 http://ftp.at.debian.org/debian/ unstable/main libgomp1 mipsel 4.7.0-2 [28.8 kB]
-Get:34 http://ftp.at.debian.org/debian/ unstable/main x11-common all 1:7.6+12 [283 kB]
-Get:35 http://ftp.at.debian.org/debian/ unstable/main libice6 mipsel 2:1.0.8-2 [56.7 kB]
-Get:36 http://ftp.at.debian.org/debian/ unstable/main libjpeg8 mipsel 8d-1 [145 kB]
-Get:37 http://ftp.at.debian.org/debian/ unstable/main libthai-data all 0.1.17-1 [205 kB]
-Get:38 http://ftp.at.debian.org/debian/ unstable/main libthai0 mipsel 0.1.17-1 [43.5 kB]
-Get:39 http://ftp.at.debian.org/debian/ unstable/main libxft2 mipsel 2.2.0-3 [56.8 kB]
-Get:40 http://ftp.at.debian.org/debian/ unstable/main fontconfig mipsel 2.8.0-3.1 [334 kB]
-Get:41 http://ftp.at.debian.org/debian/ unstable/main libpango1.0-0 mipsel 1.30.0-1 [439 kB]
-Get:42 http://ftp.at.debian.org/debian/ unstable/main libpcrecpp0 mipsel 1:8.30-4 [125 kB]
-Get:43 http://ftp.at.debian.org/debian/ unstable/main libsm6 mipsel 2:1.2.1-2 [32.5 kB]
-Get:44 http://ftp.at.debian.org/debian/ unstable/main libtiff4 mipsel 3.9.6-2 [192 kB]
-Get:45 http://ftp.at.debian.org/debian/ unstable/main libunistring0 mipsel 0.9.3-5 [407 kB]
-Get:46 http://ftp.at.debian.org/debian/ unstable/main libxext6 mipsel 2:1.3.0-3 [48.8 kB]
-Get:47 http://ftp.at.debian.org/debian/ unstable/main libxss1 mipsel 1:1.2.1-2 [16.5 kB]
-Get:48 http://ftp.at.debian.org/debian/ unstable/main libxt6 mipsel 1:1.1.1-2 [189 kB]
-Get:49 http://ftp.at.debian.org/debian/ unstable/main bsdmainutils mipsel 9.0.1 [206 kB]
-Get:50 http://ftp.at.debian.org/debian/ unstable/main groff-base mipsel 1.21-7 [1106 kB]
-Get:51 http://ftp.at.debian.org/debian/ unstable/main man-db mipsel 2.6.1-2 [1026 kB]
-Get:52 http://ftp.at.debian.org/debian/ unstable/main g++-4.6 mipsel 4.6.3-2 [6334 kB]
-Get:53 http://ftp.at.debian.org/debian/ unstable/main libstdc++6-4.6-dev mipsel 4.6.3-2 [1671 kB]
-Get:54 http://ftp.at.debian.org/debian/ unstable/main gcc-4.6 mipsel 4.6.3-2 [4062 kB]
-Get:55 http://ftp.at.debian.org/debian/ unstable/main cpp-4.6 mipsel 4.6.3-2 [3789 kB]
-Get:56 http://ftp.at.debian.org/debian/ unstable/main gcc-4.6-base mipsel 4.6.3-2 [139 kB]
-Get:57 http://ftp.at.debian.org/debian/ unstable/main file mipsel 5.11-1 [53.0 kB]
-Get:58 http://ftp.at.debian.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-5 [133 kB]
-Get:59 http://ftp.at.debian.org/debian/ unstable/main cdbs all 0.4.109 [79.4 kB]
-Get:60 http://ftp.at.debian.org/debian/ unstable/main cpp mipsel 4:4.6.3-4 [16.3 kB]
-Get:61 http://ftp.at.debian.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
-Get:62 http://ftp.at.debian.org/debian/ unstable/main gettext mipsel 0.18.1.1-5 [2008 kB]
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libncurses5 libstdc++6-4.6-dev
+ libtinfo5 ncurses-bin zlib1g
+9 upgraded, 79 newly installed, 0 to remove and 39 not upgraded.
+Need to get 69.6 MB of archives.
+After this operation, 114 MB of additional disk space will be used.
+Get:1 http://ftp.at.debian.org/debian/ unstable/main libtinfo5 mipsel 5.9+20130504-1 [287 kB]
+Get:2 http://ftp.at.debian.org/debian/ unstable/main libncurses5 mipsel 5.9+20130504-1 [99.9 kB]
+Get:3 http://ftp.at.debian.org/debian/ unstable/main ncurses-bin mipsel 5.9+20130504-1 [359 kB]
+Get:4 http://ftp.at.debian.org/debian/ unstable/main zlib1g mipsel 1:1.2.8.dfsg-1 [89.3 kB]
+Get:5 http://ftp.at.debian.org/debian/ unstable/main libasprintf0c2 mipsel 0.18.1.1-10 [27.1 kB]
+Get:6 http://ftp.at.debian.org/debian/ unstable/main libmagic1 mipsel 1:5.14-1 [217 kB]
+Get:7 http://ftp.at.debian.org/debian/ unstable/main libxml2 mipsel 2.8.0+dfsg1-7+nmu1 [868 kB]
+Get:8 http://ftp.at.debian.org/debian/ unstable/main libexpat1 mipsel 2.1.0-3 [144 kB]
+Get:9 http://ftp.at.debian.org/debian/ unstable/main libfreetype6 mipsel 2.4.9-1.1 [434 kB]
+Get:10 http://ftp.at.debian.org/debian/ unstable/main ucf all 3.0025+nmu3 [70.8 kB]
+Get:11 http://ftp.at.debian.org/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
+Get:12 http://ftp.at.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
+Get:13 http://ftp.at.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:14 http://ftp.at.debian.org/debian/ unstable/main libfontconfig1 mipsel 2.9.0-7.1 [301 kB]
+Get:15 http://ftp.at.debian.org/debian/ unstable/main libpixman-1-0 mipsel 0.26.0-4 [383 kB]
+Get:16 http://ftp.at.debian.org/debian/ unstable/main libpng12-0 mipsel 1.2.49-4 [185 kB]
+Get:17 http://ftp.at.debian.org/debian/ unstable/main libxau6 mipsel 1:1.0.7-1 [18.2 kB]
+Get:18 http://ftp.at.debian.org/debian/ unstable/main libxdmcp6 mipsel 1:1.1.1-1 [26.1 kB]
+Get:19 http://ftp.at.debian.org/debian/ unstable/main libxcb1 mipsel 1.8.1-2 [41.2 kB]
+Get:20 http://ftp.at.debian.org/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:21 http://ftp.at.debian.org/debian/ unstable/main libx11-6 mipsel 2:1.5.0-1 [868 kB]
+Get:22 http://ftp.at.debian.org/debian/ unstable/main libxcb-render0 mipsel 1.8.1-2 [16.3 kB]
+Get:23 http://ftp.at.debian.org/debian/ unstable/main libxcb-shm0 mipsel 1.8.1-2 [10.2 kB]
+Get:24 http://ftp.at.debian.org/debian/ unstable/main libxext6 mipsel 2:1.3.1-2 [51.3 kB]
+Get:25 http://ftp.at.debian.org/debian/ unstable/main libxrender1 mipsel 1:0.9.7-1 [30.6 kB]
+Get:26 http://ftp.at.debian.org/debian/ unstable/main libcairo2 mipsel 1.12.14-4 [1015 kB]
+Get:27 http://ftp.at.debian.org/debian/ unstable/main libffi6 mipsel 3.0.13-4 [19.9 kB]
+Get:28 http://ftp.at.debian.org/debian/ unstable/main libglib2.0-0 mipsel 2.36.1-2build1 [1906 kB]
+Get:29 http://ftp.at.debian.org/debian/ unstable/main libcroco3 mipsel 0.6.8-2 [120 kB]
+Get:30 http://ftp.at.debian.org/debian/ unstable/main libdatrie1 mipsel 0.2.6-2 [29.2 kB]
+Get:31 http://ftp.at.debian.org/debian/ unstable/main libunistring0 mipsel 0.9.3-5 [407 kB]
+Get:32 http://ftp.at.debian.org/debian/ unstable/main libgettextpo0 mipsel 0.18.1.1-10 [140 kB]
+Get:33 http://ftp.at.debian.org/debian/ unstable/main gcc-4.8-base mipsel 4.8.0-7 [148 kB]
+Get:34 http://ftp.at.debian.org/debian/ unstable/main libgfortran3 mipsel 4.8.0-7 [237 kB]
+Get:35 http://ftp.at.debian.org/debian/ unstable/main x11-common all 1:7.7+3 [284 kB]
+Get:36 http://ftp.at.debian.org/debian/ unstable/main libice6 mipsel 2:1.0.8-2 [56.7 kB]
+Get:37 http://ftp.at.debian.org/debian/ unstable/main libjpeg8 mipsel 8d-1 [145 kB]
+Get:38 http://ftp.at.debian.org/debian/ unstable/main libthai-data all 0.1.19-2 [156 kB]
+Get:39 http://ftp.at.debian.org/debian/ unstable/main libthai0 mipsel 0.1.19-2 [41.6 kB]
+Get:40 http://ftp.at.debian.org/debian/ unstable/main libxft2 mipsel 2.3.1-1 [59.8 kB]
+Get:41 http://ftp.at.debian.org/debian/ unstable/main fontconfig mipsel 2.9.0-7.1 [348 kB]
+Get:42 http://ftp.at.debian.org/debian/ unstable/main libpango1.0-0 mipsel 1.30.0-1 [439 kB]
+Get:43 http://ftp.at.debian.org/debian/ unstable/main libpaper1 mipsel 1.1.24+nmu2 [21.4 kB]
+Get:44 http://ftp.at.debian.org/debian/ unstable/main libpcrecpp0 mipsel 1:8.31-2 [127 kB]
+Get:45 http://ftp.at.debian.org/debian/ unstable/main libsm6 mipsel 2:1.2.1-2 [32.5 kB]
+Get:46 http://ftp.at.debian.org/debian/ unstable/main libjbig0 mipsel 2.0-2 [32.4 kB]
+Get:47 http://ftp.at.debian.org/debian/ unstable/main libtiff5 mipsel 4.0.2-6 [229 kB]
+Get:48 http://ftp.at.debian.org/debian/ unstable/main libxss1 mipsel 1:1.2.2-1 [17.3 kB]
+Get:49 http://ftp.at.debian.org/debian/ unstable/main libxt6 mipsel 1:1.1.3-1 [192 kB]
+Get:50 http://ftp.at.debian.org/debian/ unstable/main libmpc3 mipsel 1.0.1-1 [40.4 kB]
+Get:51 http://ftp.at.debian.org/debian/ unstable/main file mipsel 1:5.14-1 [53.9 kB]
+Get:52 http://ftp.at.debian.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-10 [148 kB]
+Get:53 http://ftp.at.debian.org/debian/ unstable/main cdbs all 0.4.121 [80.5 kB]
+Get:54 http://ftp.at.debian.org/debian/ unstable/main libstdc++6-4.6-dev mipsel 4.6.4-2 [1698 kB]
+Get:55 http://ftp.at.debian.org/debian/ unstable/main g++-4.6 mipsel 4.6.4-2 [4089 kB]
+Get:56 http://ftp.at.debian.org/debian/ unstable/main gcc-4.6 mipsel 4.6.4-2 [3990 kB]
+Get:57 http://ftp.at.debian.org/debian/ unstable/main cpp-4.6 mipsel 4.6.4-2 [3713 kB]
+Get:58 http://ftp.at.debian.org/debian/ unstable/main gcc-4.6-base mipsel 4.6.4-2 [143 kB]
+Get:59 http://ftp.at.debian.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
+Get:60 http://ftp.at.debian.org/debian/ unstable/main libasprintf-dev mipsel 0.18.1.1-10 [26.9 kB]
+Get:61 http://ftp.at.debian.org/debian/ unstable/main libgettextpo-dev mipsel 0.18.1.1-10 [188 kB]
+Get:62 http://ftp.at.debian.org/debian/ unstable/main gettext mipsel 0.18.1.1-10 [1734 kB]
Get:63 http://ftp.at.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
Get:64 http://ftp.at.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:65 http://ftp.at.debian.org/debian/ unstable/main debhelper all 9.20120410 [694 kB]
-Get:66 http://ftp.at.debian.org/debian/ unstable/main dpatch all 2.0.35 [95.2 kB]
-Get:67 http://ftp.at.debian.org/debian/ unstable/main gcc mipsel 4:4.6.3-4 [5026 B]
-Get:68 http://ftp.at.debian.org/debian/ unstable/main gfortran-4.6 mipsel 4.6.3-2 [4390 kB]
-Get:69 http://ftp.at.debian.org/debian/ unstable/main gfortran mipsel 4:4.6.3-4 [1134 B]
-Get:70 http://ftp.at.debian.org/debian/ unstable/main libblas3gf mipsel 1.2.20110419-2 [203 kB]
-Get:71 http://ftp.at.debian.org/debian/ unstable/main libblas-dev mipsel 1.2.20110419-2 [244 kB]
-Get:72 http://ftp.at.debian.org/debian/ unstable/main libbz2-dev mipsel 1.0.6-1 [37.2 kB]
-Get:73 http://ftp.at.debian.org/debian/ unstable/main libjpeg8-dev mipsel 8d-1 [257 kB]
-Get:74 http://ftp.at.debian.org/debian/ unstable/main liblapack3gf mipsel 3.3.1-1 [4277 kB]
-Get:75 http://ftp.at.debian.org/debian/ unstable/main liblapack-dev mipsel 3.3.1-1 [4906 kB]
-Get:76 http://ftp.at.debian.org/debian/ unstable/main libtinfo-dev mipsel 5.9-6 [102 kB]
-Get:77 http://ftp.at.debian.org/debian/ unstable/main libncurses5-dev mipsel 5.9-6 [403 kB]
-Get:78 http://ftp.at.debian.org/debian/ unstable/main libpaper1 mipsel 1.1.24+nmu1 [21.2 kB]
-Get:79 http://ftp.at.debian.org/debian/ unstable/main libpaper-utils mipsel 1.1.24+nmu1 [18.2 kB]
-Get:80 http://ftp.at.debian.org/debian/ unstable/main libpcre3-dev mipsel 1:8.30-4 [357 kB]
-Get:81 http://ftp.at.debian.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.6.dfsg-2 [212 kB]
-Get:82 http://ftp.at.debian.org/debian/ unstable/main libpng12-dev mipsel 1.2.49-1 [275 kB]
-Get:83 http://ftp.at.debian.org/debian/ unstable/main libreadline6-dev mipsel 6.2-8 [270 kB]
-Get:84 http://ftp.at.debian.org/debian/ unstable/main libreadline-dev mipsel 6.2-8 [892 B]
-Get:85 http://ftp.at.debian.org/debian/ unstable/main zip mipsel 3.0-4 [334 kB]
-Get:86 http://ftp.at.debian.org/debian/ unstable/main unzip mipsel 6.0-6 [189 kB]
-Get:87 http://ftp.at.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB]
-Get:88 http://ftp.at.debian.org/debian/ unstable/main tcl8.5 mipsel 8.5.11-1 [1613 kB]
-Get:89 http://ftp.at.debian.org/debian/ unstable/main tk8.5 mipsel 8.5.11-1 [1170 kB]
-Get:90 http://ftp.at.debian.org/debian/ unstable/main r-base-core mipsel 2.15.0-1 [19.9 MB]
-Get:91 http://ftp.at.debian.org/debian/ unstable/main r-base-dev all 2.15.0-1 [3900 B]
+Get:65 http://ftp.at.debian.org/debian/ unstable/main debhelper all 9.20130516 [708 kB]
+Get:66 http://ftp.at.debian.org/debian/ unstable/main gfortran-4.6 mipsel 4.6.4-2 [4314 kB]
+Get:67 http://ftp.at.debian.org/debian/ unstable/main gfortran mipsel 4:4.6.3-8 [1142 B]
+Get:68 http://ftp.at.debian.org/debian/ unstable/main libblas3 mipsel 1.2.20110419-5 [202 kB]
+Get:69 http://ftp.at.debian.org/debian/ unstable/main libblas-dev mipsel 1.2.20110419-5 [241 kB]
+Get:70 http://ftp.at.debian.org/debian/ unstable/main libbz2-dev mipsel 1.0.6-4 [37.3 kB]
+Get:71 http://ftp.at.debian.org/debian/ unstable/main libjpeg8-dev mipsel 8d-1 [257 kB]
+Get:72 http://ftp.at.debian.org/debian/ unstable/main liblapack3 mipsel 3.4.2+dfsg-1 [4388 kB]
+Get:73 http://ftp.at.debian.org/debian/ unstable/main liblapack-dev mipsel 3.4.2+dfsg-1 [5139 kB]
+Get:74 http://ftp.at.debian.org/debian/ unstable/main libtinfo-dev mipsel 5.9+20130504-1 [105 kB]
+Get:75 http://ftp.at.debian.org/debian/ unstable/main libncurses5-dev mipsel 5.9+20130504-1 [226 kB]
+Get:76 http://ftp.at.debian.org/debian/ unstable/main libpaper-utils mipsel 1.1.24+nmu2 [18.3 kB]
+Get:77 http://ftp.at.debian.org/debian/ unstable/main libpcre3-dev mipsel 1:8.31-2 [365 kB]
+Get:78 http://ftp.at.debian.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.8.dfsg-1 [216 kB]
+Get:79 http://ftp.at.debian.org/debian/ unstable/main libpng12-dev mipsel 1.2.49-4 [275 kB]
+Get:80 http://ftp.at.debian.org/debian/ unstable/main libreadline6-dev mipsel 6.2+dfsg-0.1 [199 kB]
+Get:81 http://ftp.at.debian.org/debian/ unstable/main libreadline-dev mipsel 6.2+dfsg-0.1 [896 B]
+Get:82 http://ftp.at.debian.org/debian/ unstable/main zip mipsel 3.0-7 [334 kB]
+Get:83 http://ftp.at.debian.org/debian/ unstable/main unzip mipsel 6.0-9 [189 kB]
+Get:84 http://ftp.at.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:85 http://ftp.at.debian.org/debian/ unstable/main tcl8.5 mipsel 8.5.11-2 [1612 kB]
+Get:86 http://ftp.at.debian.org/debian/ unstable/main tk8.5 mipsel 8.5.11-2 [1167 kB]
+Get:87 http://ftp.at.debian.org/debian/ unstable/main r-base-core mipsel 3.0.1~20130512-1 [21.0 MB]
+Get:88 http://ftp.at.debian.org/debian/ unstable/main r-base-dev all 3.0.1~20130512-1 [3910 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 74.2 MB in 21s (3414 kB/s)
-(Reading database ... 10674 files and directories currently installed.)
-Preparing to replace ncurses-bin 5.9-4 (using .../ncurses-bin_5.9-6_mipsel.deb) ...
+Fetched 69.6 MB in 33s (2063 kB/s)
+(Reading database ... 11331 files and directories currently installed.)
+Preparing to replace libtinfo5:mipsel 5.9-10 (using .../libtinfo5_5.9+20130504-1_mipsel.deb) ...
+Unpacking replacement libtinfo5:mipsel ...
+Setting up libtinfo5:mipsel (5.9+20130504-1) ...
+(Reading database ... 11331 files and directories currently installed.)
+Preparing to replace libncurses5:mipsel 5.9-10 (using .../libncurses5_5.9+20130504-1_mipsel.deb) ...
+Unpacking replacement libncurses5:mipsel ...
+Setting up libncurses5:mipsel (5.9+20130504-1) ...
+(Reading database ... 11331 files and directories currently installed.)
+Preparing to replace ncurses-bin 5.9-10 (using .../ncurses-bin_5.9+20130504-1_mipsel.deb) ...
Unpacking replacement ncurses-bin ...
-Setting up ncurses-bin (5.9-6) ...
-Selecting previously unselected package gcc-4.7-base.
-(Reading database ... 10674 files and directories currently installed.)
-Unpacking gcc-4.7-base (from .../gcc-4.7-base_4.7.0-2_mipsel.deb) ...
-Setting up gcc-4.7-base (4.7.0-2) ...
-(Reading database ... 10682 files and directories currently installed.)
-Preparing to replace libgcc1 1:4.6.2-12 (using .../libgcc1_1%3a4.7.0-2_mipsel.deb) ...
-Unpacking replacement libgcc1 ...
-Setting up libgcc1 (1:4.7.0-2) ...
-(Reading database ... 10682 files and directories currently installed.)
-Preparing to replace libstdc++6 4.6.2-12 (using .../libstdc++6_4.7.0-2_mipsel.deb) ...
-Unpacking replacement libstdc++6 ...
-Setting up libstdc++6 (4.7.0-2) ...
-(Reading database ... 10682 files and directories currently installed.)
-Preparing to replace libtinfo5 5.9-4 (using .../libtinfo5_5.9-6_mipsel.deb) ...
-Unpacking replacement libtinfo5 ...
-Setting up libtinfo5 (5.9-6) ...
-(Reading database ... 10682 files and directories currently installed.)
-Preparing to replace libncurses5 5.9-4 (using .../libncurses5_5.9-6_mipsel.deb) ...
-Unpacking replacement libncurses5 ...
-Setting up libncurses5 (5.9-6) ...
-(Reading database ... 10682 files and directories currently installed.)
-Preparing to replace zlib1g 1:1.2.3.4.dfsg-3 (using .../zlib1g_1%3a1.2.6.dfsg-2_mipsel.deb) ...
-Unpacking replacement zlib1g ...
-Setting up zlib1g (1:1.2.6.dfsg-2) ...
-Selecting previously unselected package libpipeline1.
-(Reading database ... 10682 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_mipsel.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.11-1_mipsel.deb) ...
-Selecting previously unselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_1%3a8.30-4_mipsel.deb) ...
-Selecting previously unselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.1.0-1_mipsel.deb) ...
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Selecting previously unselected package file.
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Selecting previously unselected package cdbs.
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Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_mipsel.deb) ...
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Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-5_mipsel.deb) ...
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Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
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-Preparing to replace gcc 4:4.6.2-4 (using .../gcc_4%3a4.6.3-4_mipsel.deb) ...
-Removing old gcc doc directory.
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Selecting previously unselected package gfortran-4.6.
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Selecting previously unselected package gfortran.
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+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
Selecting previously unselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_mipsel.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_mipsel.deb) ...
Selecting previously unselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.11-1_mipsel.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_mipsel.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.15.0-1_mipsel.deb) ...
+Unpacking r-base-core (from .../r-base-core_3.0.1~20130512-1_mipsel.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.15.0-1_all.deb) ...
-Setting up libpipeline1 (1.2.1-1) ...
-Setting up libmagic1 (5.11-1) ...
-Setting up libpcre3 (1:8.30-4) ...
-Setting up libexpat1 (2.1.0-1) ...
-Setting up libfreetype6 (2.4.9-1) ...
-Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3.1) ...
-Setting up libfontconfig1 (2.8.0-3.1) ...
-Setting up libpixman-1-0 (0.24.4-1) ...
-Setting up libpng12-0 (1.2.49-1) ...
-Setting up libxau6 (1:1.0.7-1) ...
-Setting up libxdmcp6 (1:1.1.0-4) ...
-Setting up libxcb1 (1.8.1-1) ...
-Setting up libx11-data (2:1.4.4-4) ...
-Setting up libx11-6 (2:1.4.4-4) ...
-Setting up libxcb-render0 (1.8.1-1) ...
-Setting up libxcb-shm0 (1.8.1-1) ...
-Setting up libxrender1 (1:0.9.6-2) ...
-Setting up libcairo2 (1.12.0-2) ...
-Setting up libffi5 (3.0.10-3) ...
-Setting up libglib2.0-0 (2.32.0-3) ...
+Unpacking r-base-dev (from .../r-base-dev_3.0.1~20130512-1_all.deb) ...
+Processing triggers for man-db ...
+Setting up libasprintf0c2:mipsel (0.18.1.1-10) ...
+Setting up libmagic1:mipsel (1:5.14-1) ...
+Setting up libxml2:mipsel (2.8.0+dfsg1-7+nmu1) ...
+Setting up libexpat1:mipsel (2.1.0-3) ...
+Setting up libfreetype6:mipsel (2.4.9-1.1) ...
+Setting up ucf (3.0025+nmu3) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:mipsel (2.9.0-7.1) ...
+Setting up libpixman-1-0:mipsel (0.26.0-4) ...
+Setting up libpng12-0:mipsel (1.2.49-4) ...
+Setting up libxau6:mipsel (1:1.0.7-1) ...
+Setting up libxdmcp6:mipsel (1:1.1.1-1) ...
+Setting up libxcb1:mipsel (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:mipsel (2:1.5.0-1) ...
+Setting up libxcb-render0:mipsel (1.8.1-2) ...
+Setting up libxcb-shm0:mipsel (1.8.1-2) ...
+Setting up libxext6:mipsel (2:1.3.1-2) ...
+Setting up libxrender1:mipsel (1:0.9.7-1) ...
+Setting up libcairo2:mipsel (1.12.14-4) ...
+Setting up libffi6:mipsel (3.0.13-4) ...
+Setting up libglib2.0-0:mipsel (2.36.1-2build1) ...
No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-7) ...
-Setting up libcroco3 (0.6.5-1) ...
-Setting up libdatrie1 (0.2.5-3) ...
-Setting up libgfortran3 (4.7.0-2) ...
-Setting up libgomp1 (4.7.0-2) ...
-Setting up x11-common (1:7.6+12) ...
+Setting up libcroco3:mipsel (0.6.8-2) ...
+Setting up libdatrie1:mipsel (0.2.6-2) ...
+Setting up libunistring0:mipsel (0.9.3-5) ...
+Setting up libgettextpo0:mipsel (0.18.1.1-10) ...
+Setting up gcc-4.8-base:mipsel (4.8.0-7) ...
+Setting up libgfortran3:mipsel (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6 (2:1.0.8-2) ...
-Setting up libjpeg8 (8d-1) ...
-Setting up libthai-data (0.1.17-1) ...
-Setting up libthai0 (0.1.17-1) ...
-Setting up libxft2 (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3.1) ...
-Cleaning up old fontconfig caches... done.
+Setting up libice6:mipsel (2:1.0.8-2) ...
+Setting up libjpeg8:mipsel (8d-1) ...
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:mipsel (0.1.19-2) ...
+Setting up libxft2:mipsel (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.30.0-1) ...
-Setting up libpcrecpp0 (1:8.30-4) ...
-Setting up libsm6 (2:1.2.1-2) ...
-Setting up libtiff4 (3.9.6-2) ...
-Setting up libunistring0 (0.9.3-5) ...
-Setting up libxext6 (2:1.3.0-3) ...
-Setting up libxss1 (1:1.2.1-2) ...
-Setting up libxt6 (1:1.1.1-2) ...
-Setting up bsdmainutils (9.0.1) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
-Building database of manual pages ...
-Setting up gcc-4.6-base (4.6.3-2) ...
-Setting up cpp-4.6 (4.6.3-2) ...
-Setting up gcc-4.6 (4.6.3-2) ...
-Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.109) ...
-Setting up cpp (4:4.6.3-4) ...
+Setting up libpango1.0-0:mipsel (1.30.0-1) ...
+Setting up libpaper1:mipsel (1.1.24+nmu2) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpcrecpp0:mipsel (1:8.31-2) ...
+Setting up libsm6:mipsel (2:1.2.1-2) ...
+Setting up libjbig0:mipsel (2.0-2) ...
+Setting up libtiff5:mipsel (4.0.2-6) ...
+Setting up libxss1:mipsel (1:1.2.2-1) ...
+Setting up libxt6:mipsel (1:1.1.3-1) ...
+Setting up libmpc3:mipsel (1.0.1-1) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
+Setting up gcc-4.6-base:mipsel (4.6.4-2) ...
+Setting up cpp-4.6 (4.6.4-2) ...
+Setting up gcc-4.6 (4.6.4-2) ...
Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-5) ...
+Setting up libasprintf-dev:mipsel (0.18.1.1-10) ...
+Setting up libgettextpo-dev:mipsel (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120410) ...
-Setting up dpatch (2.0.35) ...
-Setting up gcc (4:4.6.3-4) ...
-Setting up gfortran-4.6 (4.6.3-2) ...
-Setting up gfortran (4:4.6.3-4) ...
-update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.6-1) ...
-Setting up libjpeg8-dev (8d-1) ...
-Setting up liblapack3gf (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev (5.9-6) ...
-Setting up libncurses5-dev (5.9-6) ...
-Setting up libpaper1 (1.1.24+nmu1) ...
-
-Creating config file /etc/papersize with new version
-Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcre3-dev (1:8.30-4) ...
-Setting up zlib1g-dev (1:1.2.6.dfsg-2) ...
-Setting up libpng12-dev (1.2.49-1) ...
-Setting up libreadline6-dev (6.2-8) ...
-Setting up libreadline-dev (6.2-8) ...
-Setting up zip (3.0-4) ...
-Setting up unzip (6.0-6) ...
-Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
-Setting up tcl8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.15.0-1) ...
-Setting R_PAPERSIZE_USER default to 'a4'
+Setting up debhelper (9.20130516) ...
+Setting up gfortran-4.6 (4.6.4-2) ...
+Setting up gfortran (4:4.6.3-8) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:mipsel (1.0.6-4) ...
+Setting up libjpeg8-dev:mipsel (8d-1) ...
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:mipsel (5.9+20130504-1) ...
+Setting up libncurses5-dev:mipsel (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:mipsel (1:8.31-2) ...
+Setting up zlib1g-dev:mipsel (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:mipsel (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:mipsel (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.1~20130512-1) ...
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.15.0-1) ...
-Setting up g++-4.6 (4.6.3-2) ...
-Setting up libstdc++6-4.6-dev (4.6.3-2) ...
+Setting up r-base-dev (3.0.1~20130512-1) ...
+Setting up g++-4.6 (4.6.4-2) ...
+Setting up libstdc++6-4.6-dev (4.6.4-2) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 54 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 39 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.39-3-loongson-2e mipsel (mips64)
-Toolchain package versions: binutils_2.22-5 dpkg-dev_1.16.1.2 g++-4.6_4.6.3-2 gcc-4.6_4.6.3-2 libc6-dev_2.13-26 libstdc++6_4.7.0-2 libstdc++6-4.6-dev_4.6.3-2 linux-libc-dev_3.2.4-1
-Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-5 bsdmainutils_9.0.1 bsdutils_1:2.20.1-1.2 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.109 coreutils_8.13-3 cpp_4:4.6.3-4 cpp-4.6_4.6.3-2 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_9.20120410 debian-archive-keyring_2010.08.28 debianutils_4.2.1 diffutils_1:3.2-1 dpatch_2.0.35 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.11-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.2-4 g++-4.6_4.6.3-2 gcc_4:4.6.3-4 gcc-4.4-base_4.4.6-14 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-2 gcc-4.6-base_4.6.3-2 gcc-4.7-base_4.7.0-2 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.3-4 gfortran-4.6_4.6.3-2 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.10-1 groff-base_1.21-7 gzip_1.4-2 hostname_3.10 html2text_1.3.2a-15 initscripts_2.88dsf-22 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-1.2 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-26 libc-dev-bin_2.13-26 libc6_2.13-26 libc6-dev_2.13-26 libcairo2_1.12.0-2 libclass-isa-perl_0.36-3 libcomerr2_1.42-1 libcroco3_0.6.5-1 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libexpat1_2.1.0-1 libffi5_3.0.10-3 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-2 libgdbm3_1.8.3-10 libgfortran3_4.7.0-2 libglib2.0-0_2.32.0-3 libgmp10_2:5.0.3+dfsg-1 libgomp1_4.7.0-2 libice6_2:1.0.8-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-1.2 libmpc2_0.9-4 libmpfr4_3.1.0-3 libncurses5_5.9-6 libncurses5-dev_5.9-6 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_1:8.30-4 libpcre3-dev_1:8.30-4 libpcrecpp0_1:8.30-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.49-1 libpng12-dev_1.2.49-1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.0-4.1 libsepol1_2.1.0-1.2 libslang2_2.2.4-6 libsm6_2:1.2.1-2 libss2_1.42-1 libstdc++6_4.7.0-2 libstdc++6-4.6-dev_4.6.3-2 libswitch-perl_2.16-2 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-6 libtinfo5_5.9-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-1.2 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.2.4-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28.1 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-16 mount_2.20.1-1.2 multiarch-support_2.13-26 ncurses-base_5.9-4 ncurses-bin_5.9-6 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-3 perl_5.14.2-7 perl-base_5.14.2-7 perl-modules_5.14.2-7 po-debconf_1.0.16+nmu2 r-base-core_2.15.0-1 r-base-dev_2.15.0-1 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22 sysvinit_2.88dsf-22 sysvinit-utils_2.88dsf-22 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2011n-2 ucf_3.0025+nmu2 unzip_6.0-6 util-linux_2.20.1-1.2 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.6_4.6.4-2 gcc-4.6_4.6.4-2 libc6-dev_2.13-38 libstdc++6_4.7.2-5 libstdc++6-4.6-dev_4.6.4-2 linux-libc-dev_3.2.39-2
+Package versions: apt_0.9.7.8 base-files_7.1 base-passwd_3.5.26 bash_4.2+dfsg-0.1 binutils_2.22-8 bsdmainutils_9.0.4 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.20-3 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2 dash_0.5.7-3 debconf_1.5.49 debfoster_2.7-1.2 debhelper_9.20130516 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-1 findutils_4.4.2-5 fontconfig_2.9.0-7.1 fontconfig-config_2.9.0-7.1 fonts-dejavu-core_2.33+svn2514-3 g++_4:4.6.3-8 g++-4.6_4.6.4-2 gcc_4:4.6.3-8 gcc-4.4-base_4.4.7-3 gcc-4.6_4.6.4-2 gcc-4.6-base_4.6.4-2 gcc-4.7-base_4.7.2-5 gcc-4.8-base_4.8.0-7 gettext_0.18.1.1-10 gettext-base_0.18.1.1-10 gfortran_4:4.6.3-8 gfortran-4.6_4.6.4-2 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.14-1 groff-base_1.22.2-1 gzip_1.5-1.1 hostname_3.12 html2text_1.3.2a-15 initscripts_2.88dsf-41 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7.8 libasprintf-dev_0.18.1.1-10 libasprintf0c2_0.18.1.1-10 libattr1_1:2.4.46-8 libblas-dev_1.2.20110419-5 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.3 libbz2-1.0_1.0.6-4 libbz2-dev_1.0.6-4 libc-bin_2.13-38 libc-dev-bin_2.13-38 libc6_2.13-38 libc6-dev_2.13-38 libcairo2_1.12.14-4 libclass-isa-perl_0.36-5 libcomerr2_1.42.5-1.1 libcroco3_0.6.8-2 libdatrie1_0.2.6-2 libdb5.1_5.1.29-5 libdpkg-perl_1.16.10 libexpat1_2.1.0-3 libffi6_3.0.13-4 libfile-fcntllock-perl_0.14-2 libfontconfig1_2.9.0-7.1 libfreetype6_2.4.9-1.1 libgc1c2_1:7.1-9.1 libgcc1_1:4.7.2-5 libgdbm3_1.8.3-11 libgettextpo-dev_0.18.1.1-10 libgettextpo0_0.18.1.1-10 libgfortran3_4.8.0-7 libglib2.0-0_2.36.1-2build1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.2-5 libice6_2:1.0.8-2 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.4.2+dfsg-1 liblapack3_3.4.2+dfsg-1 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-1 libmount1_2.20.1-5.3 libmpc2_0.9-4 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libncurses5_5.9+20130504-1 libncurses5-dev_5.9+20130504-1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.31-2 libpcre3-dev_1:8.31-2 libpcrecpp0_1:8.31-2 libpipeline1_1.2.2-1 libpixman-1-0_0.26.0-4 libpng12-0_1.2.49-4 libpng12-dev_1.2.49-4 libreadline-dev_6.2+dfsg-0.1 libreadline6_6.2+dfsg-0.1 libreadline6-dev_6.2+dfsg-0.1 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libss2_1.42.5-1.1 libstdc++6_4.7.2-5 libstdc++6-4.6-dev_4.6.4-2 libswitch-perl_2.16-2 libthai-data_0.1.19-2 libthai0_0.1.19-2 libtiff5_4.0.2-6 libtimedate-perl_1.2000-1 libtinfo-dev_5.9+20130504-1 libtinfo5_5.9+20130504-1 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23+nmu1 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.3 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-2 libxcb-shm0_1.8.1-2 libxcb1_1.8.1-2 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-7+nmu1 libxrender1_1:0.9.7-1 libxss1_1:1.2.2-1 libxt6_1:1.1.3-1 linux-libc-dev_3.2.39-2 login_1:4.1.5.1-1 lsb-base_4.1+Debian9 make_3.81-8.2 man-db_2.6.3-3 mawk_1.3.3-17 mount_2.20.1-5.3 multiarch-support_2.13-38 ncurses-base_5.9-10 ncurses-bin_5.9+20130504-1 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-20 perl-base_5.14.2-20 perl-modules_5.14.2-20 po-debconf_1.0.16+nmu2 r-base-core_3.0.1~20130512-1 r-base-dev_3.0.1~20130512-1 readline-common_6.2+dfsg-0.1 sed_4.2.1-10 sensible-utils_0.0.7 sudo_1.8.5p2-1+nmu1 sysv-rc_2.88dsf-41 sysvinit_2.88dsf-41 sysvinit-utils_2.88dsf-41 tar_1.26+dfsg-0.1 tcl8.5_8.5.11-2 tk8.5_8.5.11-2 ttf-dejavu-core_2.33+svn2514-3 tzdata_2013b-1 ucf_3.0025+nmu3 unzip_6.0-9 util-linux_2.20.1-5.3 x11-common_1:7.7+3 xdg-utils_1.1.0~rc1+git20111210-7 xz-utils_5.1.1alpha+20120614-2 zip_3.0-7 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -1605,12 +1517,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Apr 12 02:45:32 2012 UTC using RSA key ID 2295D502
+gpgv: Signature made Thu May 16 14:46:42 2013 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.12.0~dfsg-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.12.0~dfsg
-dpkg-source: info: unpacking r-bioc-limma_3.12.0~dfsg.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.12.0~dfsg-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.16.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.16.3~dfsg
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg-1.debian.tar.gz
Check disc space
────────────────
@@ -1620,27 +1532,12 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.12.0~dfsg-1
- dpkg-source --before-build r-bioc-limma-3.12.0~dfsg
+dpkg-buildpackage: source version 3.16.3~dfsg-1
+ dpkg-source --before-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: host architecture mipsel
fakeroot debian/rules clean
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
-/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg'
-if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "reverse-patches" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-for dir in debian/patches ; do \
- rm -f $dir/*.log ; \
- done
dh_clean
rm -f debian/r-bioc-limma.substvars
rm -f debian/r-bioc-limma.*.debhelper
@@ -1660,27 +1557,10 @@ if test -d src; then \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
- debian/rules build
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+ debian/rules build-arch
test -x debian/rules
mkdir -p "."
-/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) insteadmake[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg'
-
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg'
-if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg'
fakeroot debian/rules binary-arch
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
@@ -1692,26 +1572,26 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
install -d debian/r-bioc-limma/usr/lib/R/site-library
-echo "R:Depends=r-base-core (>= 2.15.0-1)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 3.0.1~20130512-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g0 -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg/src'
-installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/src'
+installing to /build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -1719,22 +1599,27 @@ installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limm
*** installing help indices
** building package indices
** installing vignettes
- 'limma.Rnw'
** testing if installed package can be loaded
-
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/CITATION
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/doc/*
dh_installdocs -pr-bioc-limma
install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/doc/r-bioc-limma \;
+ cp -a debian/README.test debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ chown -R 0:0 debian/r-bioc-limma/usr/share/doc
+ chmod -R go=rX debian/r-bioc-limma/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-limma/usr/share/doc
install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
@@ -1766,9 +1651,9 @@ dh_strip -pr-bioc-limma
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
cd debian/r-bioc-limma
- chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
- gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
- cd '/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg'
+ chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save usr/share/doc/r-bioc-limma/changelog
+ gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save usr/share/doc/r-bioc-limma/changelog
+ cd '/build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg'
dh_fixperms -pr-bioc-limma
find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -1798,62 +1683,79 @@ dh_md5sums -pr-bioc-limma
chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
dpkg-deb --build debian/r-bioc-limma ..
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.12.0~dfsg-1_mipsel.deb'.
- dpkg-genchanges -B -mmipsel Build Daemon (eysler) <buildd_mipsel-eysler at buildd.debian.org> >../r-bioc-limma_3.12.0~dfsg-1_mipsel.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.16.3~dfsg-1_mipsel.deb'.
+ dpkg-genchanges -B -mmipsel Build Daemon (eysler) <buildd_mipsel-eysler at buildd.debian.org> >../r-bioc-limma_3.16.3~dfsg-1_mipsel.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.12.0~dfsg
+ dpkg-source --after-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120412-0509
+Build finished at 20130517-1831
-r-bioc-limma_3.12.0~dfsg-1_mipsel.changes:
+r-bioc-limma_3.16.3~dfsg-1_mipsel.changes:
Format: 1.8
-Date: Thu, 12 Apr 2012 11:40:40 +0900
+Date: Thu, 16 May 2013 15:16:13 +0200
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: mipsel
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
Distribution: sid
Urgency: low
Maintainer: mipsel Build Daemon (eysler) <buildd_mipsel-eysler at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.12.0~dfsg-1) unstable; urgency=low
+ r-bioc-limma (3.16.3~dfsg-1) unstable; urgency=low
.
[ Charles Plessy ]
- 2d3420e Imported Upstream version 3.12.0~dfsg
- 4bbb8e4 Document LIMMA's copyright as a whole.
+ ff8c6db Imported Upstream version 3.12.1~dfsg
+ b4f097e Effective license is GPL-2, without the '+', as R is GPL-2.
.
[ Andreas Tille ]
- 8a61a4c Obtain references from inst/CITATION
+ * Imported new upstream version 3.16.3~dfsg
+ * debian/control
+ - added myself to Uploaders
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - Fake normalisation as it is done by `cme fix dpkg-control`
+ (the command did actually no change - the control file was
+ brought into shape manually)
+ - Removed versioned dependency of r-base-dev
+ * debian/copyright:
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - checked new upstream version and bumped version number
+ - Add years to Copyright fields
+ * debian/rules: Remove executable flag from doc files
+ * debian/source/format: Add explicit source format specification
Checksums-Sha1:
- 51aa09c772e3c5510f3207dcbe29181953ad4abb 806304 r-bioc-limma_3.12.0~dfsg-1_mipsel.deb
+ f474bb4af7bd722d3dcb86a4395437cd76d853a0 1618156 r-bioc-limma_3.16.3~dfsg-1_mipsel.deb
Checksums-Sha256:
- 0c6604b3c9e483e70ff6a548bb04c45e314031b499c0184f26a2b6d32262eeec 806304 r-bioc-limma_3.12.0~dfsg-1_mipsel.deb
+ 069965fbe8f452bb699604f5a07c1f882ea0e1e0391dc2fcd07ceb95fb51376b 1618156 r-bioc-limma_3.16.3~dfsg-1_mipsel.deb
Files:
- a751dac436d9bce200b7b445102f1ef1 806304 gnu-r optional r-bioc-limma_3.12.0~dfsg-1_mipsel.deb
+ af1f5e65629acc4e07863f7193a399f4 1618156 gnu-r optional r-bioc-limma_3.16.3~dfsg-1_mipsel.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.12.0~dfsg-1_mipsel.deb
+r-bioc-limma_3.16.3~dfsg-1_mipsel.deb
─────────────────────────────────────
new debian package, version 2.0.
- size 806304 bytes: control archive= 1545 bytes.
- 774 bytes, 16 lines control
- 2290 bytes, 30 lines md5sums
+ size 1618156 bytes: control archive= 1678 bytes.
+ 783 bytes, 16 lines control
+ 2621 bytes, 34 lines md5sums
Package: r-bioc-limma
- Version: 3.12.0~dfsg-1
+ Version: 3.16.3~dfsg-1
Architecture: mipsel
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 984
- Depends: libc6 (>= 2.2), r-base-core (>= 2.15.0-1)
+ Installed-Size: 1847
+ Depends: libc6 (>= 2.2), r-base-core (>= 3.0.1~20130512-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -1865,51 +1767,56 @@ r-bioc-limma_3.12.0~dfsg-1_mipsel.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2012-04-12 05:08 ./
-drwxr-xr-x root/root 0 2012-04-12 05:08 ./usr/
-drwxr-xr-x root/root 0 2012-04-12 05:08 ./usr/share/
-drwxr-xr-x root/root 0 2012-04-12 05:08 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-04-12 05:09 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 27998 2012-03-30 22:32 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 264 2012-04-12 05:06 ./usr/share/doc/r-bioc-limma/README.Debian
--rw-r--r-- root/root 683 2012-04-12 05:06 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 2457 2012-04-12 05:06 ./usr/share/doc/r-bioc-limma/copyright
-drwxr-xr-x root/root 0 2012-04-12 05:07 ./usr/lib/
-drwxr-xr-x root/root 0 2012-04-12 05:07 ./usr/lib/R/
-drwxr-xr-x root/root 0 2012-04-12 05:08 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2012-04-12 05:08 ./usr/lib/R/site-library/limma/
-drwxr-xr-x root/root 0 2012-04-12 05:08 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 472367 2012-04-12 05:08 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 1372 2012-04-12 05:08 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 2431 2012-04-12 05:08 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 3334 2012-04-12 05:08 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 6317 2012-04-12 05:08 ./usr/lib/R/site-library/limma/help/AnIndex
-drwxr-xr-x root/root 0 2012-04-12 05:07 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 383 2012-04-12 05:07 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 202044 2012-04-12 05:07 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3819 2012-04-12 05:07 ./usr/lib/R/site-library/limma/R/limma.rdx
--rwxr-xr-x root/root 1230 2012-04-12 05:07 ./usr/lib/R/site-library/limma/CITATION
--rw-r--r-- root/root 9754 2012-04-12 05:08 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2012-04-12 05:08 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 91993 2012-04-12 05:07 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rw-r--r-- root/root 42743 2012-04-12 05:07 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 673 2012-04-12 05:07 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 1711 2012-04-12 05:07 ./usr/lib/R/site-library/limma/doc/limma.Rnw
-drwxr-xr-x root/root 0 2012-04-12 05:08 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 1179 2012-04-12 05:08 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 35015 2012-04-12 05:08 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 971 2012-04-12 05:07 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2012-04-12 05:08 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 521 2012-04-12 05:08 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 220 2012-04-12 05:08 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 2943 2012-04-12 05:08 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 5727 2012-04-12 05:08 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 1055 2012-04-12 05:07 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 6157 2012-04-12 05:08 ./usr/lib/R/site-library/limma/Meta/Rd.rds
-drwxr-xr-x root/root 0 2012-04-12 05:09 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 10704 2012-04-12 05:09 ./usr/lib/R/site-library/limma/libs/limma.so
--rw-r--r-- root/root 1901 2012-04-12 05:07 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 3989 2012-04-12 05:07 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2013-05-17 18:30 ./
+drwxr-xr-x root/root 0 2013-05-17 18:30 ./usr/
+drwxr-xr-x root/root 0 2013-05-17 18:30 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-17 18:30 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-17 18:31 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 31097 2013-05-02 00:02 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 264 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 1153 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2013-05-17 18:31 ./usr/share/doc/r-bioc-limma/tests/
+-rw-r--r-- root/root 2097 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.R.gz
+-rw-r--r-- root/root 14649 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save.gz
+-rw-r--r-- root/root 2605 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 437 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.test
+drwxr-xr-x root/root 0 2013-05-17 18:29 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-17 18:29 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-17 18:30 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-17 18:30 ./usr/lib/R/site-library/limma/
+drwxr-xr-x root/root 0 2013-05-17 18:30 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 494649 2013-05-17 18:30 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 1406 2013-05-17 18:30 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 2567 2013-05-17 18:30 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 3403 2013-05-17 18:30 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6703 2013-05-17 18:30 ./usr/lib/R/site-library/limma/help/AnIndex
+drwxr-xr-x root/root 0 2013-05-17 18:29 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 1056 2013-05-17 18:29 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 206554 2013-05-17 18:29 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 4116 2013-05-17 18:29 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 963 2013-05-17 18:29 ./usr/lib/R/site-library/limma/CITATION
+-rw-r--r-- root/root 10085 2013-05-17 18:30 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2013-05-17 18:30 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 102936 2013-05-17 18:29 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 45597 2013-05-17 18:29 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 673 2013-05-17 18:29 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 1711 2013-05-17 18:29 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 806089 2013-05-17 18:29 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+drwxr-xr-x root/root 0 2013-05-17 18:30 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2013-05-17 18:30 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 37337 2013-05-17 18:30 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 992 2013-05-17 18:29 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2013-05-17 18:30 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 541 2013-05-17 18:30 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 219 2013-05-17 18:30 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 3089 2013-05-17 18:30 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 5944 2013-05-17 18:30 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 1072 2013-05-17 18:29 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 6375 2013-05-17 18:30 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+drwxr-xr-x root/root 0 2013-05-17 18:31 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10704 2013-05-17 18:31 ./usr/lib/R/site-library/limma/libs/limma.so
+-rw-r--r-- root/root 2046 2013-05-17 18:29 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 11214 2013-05-17 18:29 ./usr/lib/R/site-library/limma/NEWS.Rd
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -1923,7 +1830,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-mipsel-sbuild-5b96f965-8ec0-4630-8a72-dc3bf7b7f74c/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b
+Purging /var/lib/schroot/mount/sid-mipsel-sbuild-10ee009b-bf9f-41cc-8ef1-e3fdfcc5afaa/build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -1931,19 +1838,19 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: mipsel
-Build-Space: 3268
-Build-Time: 145
+Build-Space: 5888
+Build-Time: 132
Distribution: sid
-Install-Time: 278
-Job: r-bioc-limma_3.12.0~dfsg-1
+Install-Time: 284
+Job: r-bioc-limma_3.16.3~dfsg-1
Package: r-bioc-limma
-Package-Time: 581
-Source-Version: 3.12.0~dfsg-1
-Space: 3268
+Package-Time: 563
+Source-Version: 3.16.3~dfsg-1
+Space: 5888
Status: successful
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120412-0509
-Build needed 00:09:41, 3268k disc space
-Signature with key '7550FB2E' requested:
+Finished at 20130517-1831
+Build needed 00:09:23, 5888k disc space
+Signature with key '6EE6C7C2' requested:
diff --git a/mipsel.log b/mipsel.log
index 1400e04..855dfa1 100644
--- a/mipsel.log
+++ b/mipsel.log
@@ -1,28 +1,28 @@
-From buildd at eysler.debian.org Thu Apr 12 05:09:35 2012
+From buildd at eysler.debian.org Fri May 17 18:31:24 2013
Return-path: <buildd at eysler.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at eysler.debian.org>)
- id 1SICHn-0001fs-2M
- for logs at buildd.debian.org; Thu, 12 Apr 2012 05:09:35 +0000
+ id 1UdPR5-0005DQ-Lu
+ for logs at buildd.debian.org; Fri, 17 May 2013 18:31:24 +0000
Received: from eysler.debian.org ([2001:858:2:2:1a1a:0:563b:7698])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=eysler.debian.org, EMAIL=hostmaster at eysler.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at eysler.debian.org>)
- id 1SICHm-0002uY-1a
- for logs at buildd.debian.org; Thu, 12 Apr 2012 05:09:34 +0000
+ id 1UdPR4-0000ij-Ke
+ for logs at buildd.debian.org; Fri, 17 May 2013 18:31:22 +0000
Received: from buildd by eysler.debian.org with local (Exim 4.72)
- (envelope-from <buildd at eysler.debian.org>) id 1SICHj-0003MN-GL
- for logs at buildd.debian.org; Thu, 12 Apr 2012 05:09:31 +0000
-Date: Thu, 12 Apr 2012 05:09:31 +0000
-Message-Id: <E1SICHj-0003MN-GL at eysler.debian.org>
+ (envelope-from <buildd at eysler.debian.org>) id 1UdPR3-0007Hr-Oy
+ for logs at buildd.debian.org; Fri, 17 May 2013 18:31:21 +0000
+Date: Fri, 17 May 2013 18:31:21 +0000
+Message-Id: <E1UdPR3-0007Hr-Oy at eysler.debian.org>
From: buildd on eysler <buildd at eysler.debian.org>
To: logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.12.0~dfsg-1 on mipsel
+Subject: Log for successful build of r-bioc-limma_3.16.3~dfsg-1 on mipsel
(dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
@@ -31,40 +31,35 @@ Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on eysler.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.12.0~dfsg-1 (mipsel) 12 Apr 2012 04:59 ║
+║ r-bioc-limma 3.16.3~dfsg-1 (mipsel) 17 May 2013 18:21 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.12.0~dfsg-1
-Source Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
+Source Version: 3.16.3~dfsg-1
Architecture: mipsel
-Get:1 http://ftp.at.debian.org unstable InRelease [208 kB]
-Get:2 http://incoming.debian.org unstable InRelease [208 kB]
-Get:3 http://ftp.at.debian.org unstable/main Sources [6221 kB]
-Ign http://incoming.debian.org InRelease
-Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org Release [1601 B]
-Get:6 http://incoming.debian.org unstable/main Sources [6221 kB]
-Get:7 http://ftp.at.debian.org unstable/contrib Sources [54.5 kB]
-Get:8 http://ftp.at.debian.org unstable/non-free Sources [97.7 kB]
-Get:9 http://ftp.at.debian.org unstable/main mipsel Packages [5836 kB]
-Get:10 http://incoming.debian.org unstable/contrib Sources [54.5 kB]
-Get:11 http://incoming.debian.org unstable/non-free Sources [97.7 kB]
-Get:12 http://incoming.debian.org unstable/main mipsel Packages [5836 kB]
-Get:13 http://ftp.at.debian.org unstable/contrib mipsel Packages [37.3 kB]
-Ign http://ftp.at.debian.org unstable/contrib TranslationIndex
-Get:14 http://ftp.at.debian.org unstable/main TranslationIndex [2223 B]
-Get:15 http://ftp.at.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:16 http://ftp.at.debian.org unstable/main Translation-en [3936 kB]
-Get:17 http://incoming.debian.org unstable/contrib mipsel Packages [37.3 kB]
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:18 http://incoming.debian.org unstable/main TranslationIndex [2223 B]
-Get:19 http://incoming.debian.org Sources [42.8 kB]
-Get:20 http://incoming.debian.org Packages [744 kB]
-Get:21 http://incoming.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:22 http://incoming.debian.org unstable/main Translation-en [3936 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 33.6 MB in 1min 38s (342 kB/s)
+Get:1 http://ftp.at.debian.org unstable Release.gpg [1571 B]
+Get:2 http://ftp.at.debian.org unstable Release [203 kB]
+Get:3 http://incoming.debian.org unstable Release.gpg [1571 B]
+Get:4 http://ftp.at.debian.org unstable/main Sources [6727 kB]
+Get:5 http://incoming.debian.org buildd-unstable Release.gpg [1571 B]
+Get:6 http://incoming.debian.org unstable Release [203 kB]
+Get:7 http://incoming.debian.org buildd-unstable Release [109 kB]
+Get:8 http://incoming.debian.org unstable/main Sources [6727 kB]
+Get:9 http://ftp.at.debian.org unstable/contrib Sources [53.7 kB]
+Get:10 http://ftp.at.debian.org unstable/non-free Sources [103 kB]
+Get:11 http://ftp.at.debian.org unstable/main mipsel Packages [6199 kB]
+Get:12 http://incoming.debian.org unstable/contrib Sources [53.7 kB]
+Get:13 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:14 http://incoming.debian.org unstable/main mipsel Packages [6199 kB]
+Get:15 http://incoming.debian.org unstable/contrib mipsel Packages [37.4 kB]
+Get:16 http://incoming.debian.org buildd-unstable/main Sources [97.6 kB]
+Get:17 http://ftp.at.debian.org unstable/contrib mipsel Packages [37.4 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib Sources [14 B]
+Get:19 http://incoming.debian.org buildd-unstable/non-free Sources [2211 B]
+Get:20 http://incoming.debian.org buildd-unstable/main mipsel Packages [82.9 kB]
+Get:21 http://incoming.debian.org buildd-unstable/contrib mipsel Packages [14 B]
+Fetched 26.9 MB in 1min 43s (260 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -85,11 +80,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 288 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (dsc) [2030 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (tar) [283 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (diff) [3098 B]
-Fetched 288 kB in 1s (207 kB/s)
+Need to get 1058 kB of source archives.
+Get:1 http://ftp.at.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (dsc) [1409 B]
+Get:2 http://ftp.at.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (tar) [1052 kB]
+Get:3 http://ftp.at.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (diff) [4167 B]
+Fetched 1058 kB in 0s (2213 kB/s)
Download complete and in download only mode
Check arch
@@ -102,522 +97,509 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.2-1)
+build-essential: already installed (11.6)
+fakeroot: already installed (1.18.4-2)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 68 not upgraded.
+The following packages were automatically installed and are no longer required:
+ groff-base libpipeline1 man-db
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 48 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 68 not upgraded.
+The following packages were automatically installed and are no longer required:
+ groff-base libpipeline1 man-db
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 48 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev
Checking for already installed dependencies...
-base-files: already installed (6.5)
-base-passwd: already installed (3.5.24)
-bash: already installed (4.2-1)
-coreutils: already installed (8.13-3)
-dash: already installed (0.5.7-2)
-debianutils: already installed (4.2.1)
-diffutils: already installed (1:3.2-1)
-dpkg: already installed (1.16.1.2)
-e2fsprogs: already installed (1.42-1)
-findutils: already installed (4.4.2-4)
-grep: already installed (2.10-1)
-gzip: already installed (1.4-2)
-hostname: already installed (3.10)
-ncurses-base: already installed (5.9-4)
-ncurses-bin: already installed (5.9-4)
-perl-base: already installed (5.14.2-7)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-22)
-sysvinit: already installed (2.88dsf-22)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-1.2)
-mount: already installed (2.20.1-1.2)
-util-linux: already installed (2.20.1-1.2)
-libc6-dev: already installed (2.13-26)
-gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
+base-files: already installed (7.1)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2+dfsg-0.1)
+bsdutils: already installed (1:2.20.1-5.3)
+coreutils: already installed (8.20-3)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1.1)
+findutils: already installed (4.4.2-5)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+libc-bin: already installed (2.13-38)
+login: already installed (1:4.1.5.1-1)
+mount: already installed (2.20.1-5.3)
+ncurses-base: already installed (5.9-10)
+ncurses-bin: already installed (5.9-10)
+perl-base: already installed (5.14.2-20)
+sed: already installed (4.2.1-10)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-0.1)
+util-linux: already installed (2.20.1-5.3)
+libc6-dev: already installed (2.13-38)
+gcc: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120410
+Using default version 9.20130516
cdbs: missing
r-base-dev: missing
-Using default version 2.15.0-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils cpp cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
- gcc gcc-4.6 gcc-4.6-base gcc-4.7-base gettext gettext-base gfortran
- gfortran-4.6 groff-base html2text intltool-debian libblas-dev libblas3gf
- libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1
- libfreetype6 libgcc1 libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5
- libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev
- libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
- libreadline-dev libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev
- libthai-data libthai0 libtiff4 libtinfo-dev libtinfo5 libunistring0 libx11-6
- libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
- libxft2 libxml2 libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf
- r-base-core tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common xdg-utils zip
- zlib1g zlib1g-dev
+ cpp-4.6 file fontconfig fontconfig-config fonts-dejavu-core g++-4.6 gcc-4.6
+ gcc-4.6-base gcc-4.8-base gettext gettext-base gfortran gfortran-4.6
+ html2text intltool-debian libasprintf-dev libasprintf0c2 libblas-dev
+ libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi6
+ libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0 libgfortran3
+ libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3
+ libmagic1 libmpc3 libncurses5 libncurses5-dev libpango1.0-0 libpaper-utils
+ libpaper1 libpcre3-dev libpcrecpp0 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libstdc++6-4.6-dev libthai-data
+ libthai0 libtiff5 libtinfo-dev libtinfo5 libunistring0 libx11-6 libx11-data
+ libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
+ libxml2 libxrender1 libxss1 libxt6 ncurses-bin po-debconf r-base-core tcl8.5
+ tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts cpp-doc gcc-4.6-locales dh-make
- curl defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-multilib
- manpages-dev autoconf automake1.9 libtool flex bison gdb gcc-doc
- gcc-4.6-multilib libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg
- libquadmath-dbg libmudflap0-dbg gettext-doc gfortran-multilib gfortran-doc
- gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
+ devscripts gcc-4.6-locales dh-make g++-4.6-multilib gcc-4.6-doc
+ libstdc++6-4.6-dbg gcc-4.6-multilib libmudflap0-4.6-dev libgcc1-dbg
+ libgomp1-dbg libquadmath-dbg libmudflap0-dbg libcloog-ppl1 libcloog-ppl0
+ libppl-c4 libppl12 libppl9 gettext-doc gfortran-multilib gfortran-doc
+ gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg ncurses-doc
ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
- r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc libmail-box-perl ess r-doc-info
+ r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
- texi2html tclreadline gvfs-bin
+ texi2html tcl-tclreadline gvfs-bin
Recommended packages:
- autotools-dev patchutils autopoint libglib2.0-data shared-mime-info libgpm2
- xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
+ autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
+ libgpm2 xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
- bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config
- gcc-4.7-base gettext gettext-base gfortran gfortran-4.6 groff-base html2text
- intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3
- libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgfortran3
- libglib2.0-0 libice6 libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf
- libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3
- libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
- libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
- libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
- libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
- libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core
- unzip x11-common xdg-utils zip zlib1g-dev
+ cdbs debhelper file fontconfig fontconfig-config fonts-dejavu-core
+ gcc-4.8-base gettext gettext-base gfortran gfortran-4.6 html2text
+ intltool-debian libasprintf-dev libasprintf0c2 libblas-dev libblas3
+ libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi6 libfontconfig1
+ libfreetype6 libgettextpo-dev libgettextpo0 libgfortran3 libglib2.0-0
+ libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1
+ libmpc3 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev
+ libpcrecpp0 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff5 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
The following packages will be upgraded:
- cpp cpp-4.6 g++-4.6 gcc gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libncurses5
- libstdc++6 libstdc++6-4.6-dev libtinfo5 ncurses-bin zlib1g
-14 upgraded, 77 newly installed, 0 to remove and 54 not upgraded.
-Need to get 74.2 MB of archives.
-After this operation, 121 MB of additional disk space will be used.
-Get:1 http://ftp.at.debian.org/debian/ unstable/main ncurses-bin mipsel 5.9-6 [329 kB]
-Get:2 http://ftp.at.debian.org/debian/ unstable/main gcc-4.7-base mipsel 4.7.0-2 [139 kB]
-Get:3 http://ftp.at.debian.org/debian/ unstable/main libgcc1 mipsel 1:4.7.0-2 [69.1 kB]
-Get:4 http://ftp.at.debian.org/debian/ unstable/main libstdc++6 mipsel 4.7.0-2 [305 kB]
-Get:5 http://ftp.at.debian.org/debian/ unstable/main libtinfo5 mipsel 5.9-6 [265 kB]
-Get:6 http://ftp.at.debian.org/debian/ unstable/main libncurses5 mipsel 5.9-6 [284 kB]
-Get:7 http://ftp.at.debian.org/debian/ unstable/main zlib1g mipsel 1:1.2.6.dfsg-2 [85.7 kB]
-Get:8 http://ftp.at.debian.org/debian/ unstable/main libpipeline1 mipsel 1.2.1-1 [36.7 kB]
-Get:9 http://ftp.at.debian.org/debian/ unstable/main libmagic1 mipsel 5.11-1 [251 kB]
-Get:10 http://ftp.at.debian.org/debian/ unstable/main libpcre3 mipsel 1:8.30-4 [245 kB]
-Get:11 http://ftp.at.debian.org/debian/ unstable/main libexpat1 mipsel 2.1.0-1 [144 kB]
-Get:12 http://ftp.at.debian.org/debian/ unstable/main libfreetype6 mipsel 2.4.9-1 [434 kB]
-Get:13 http://ftp.at.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:14 http://ftp.at.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3.1 [219 kB]
-Get:15 http://ftp.at.debian.org/debian/ unstable/main libfontconfig1 mipsel 2.8.0-3.1 [285 kB]
-Get:16 http://ftp.at.debian.org/debian/ unstable/main libpixman-1-0 mipsel 0.24.4-1 [362 kB]
-Get:17 http://ftp.at.debian.org/debian/ unstable/main libpng12-0 mipsel 1.2.49-1 [185 kB]
-Get:18 http://ftp.at.debian.org/debian/ unstable/main libxau6 mipsel 1:1.0.7-1 [18.2 kB]
-Get:19 http://ftp.at.debian.org/debian/ unstable/main libxdmcp6 mipsel 1:1.1.0-4 [22.4 kB]
-Get:20 http://ftp.at.debian.org/debian/ unstable/main libxcb1 mipsel 1.8.1-1 [41.0 kB]
-Get:21 http://ftp.at.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-4 [187 kB]
-Get:22 http://ftp.at.debian.org/debian/ unstable/main libx11-6 mipsel 2:1.4.4-4 [857 kB]
-Get:23 http://ftp.at.debian.org/debian/ unstable/main libxcb-render0 mipsel 1.8.1-1 [16.1 kB]
-Get:24 http://ftp.at.debian.org/debian/ unstable/main libxcb-shm0 mipsel 1.8.1-1 [9950 B]
-Get:25 http://ftp.at.debian.org/debian/ unstable/main libxrender1 mipsel 1:0.9.6-2 [30.2 kB]
-Get:26 http://ftp.at.debian.org/debian/ unstable/main libcairo2 mipsel 1.12.0-2 [904 kB]
-Get:27 http://ftp.at.debian.org/debian/ unstable/main libffi5 mipsel 3.0.10-3 [22.8 kB]
-Get:28 http://ftp.at.debian.org/debian/ unstable/main libglib2.0-0 mipsel 2.32.0-3 [1960 kB]
-Get:29 http://ftp.at.debian.org/debian/ unstable/main libxml2 mipsel 2.7.8.dfsg-7 [859 kB]
-Get:30 http://ftp.at.debian.org/debian/ unstable/main libcroco3 mipsel 0.6.5-1 [139 kB]
-Get:31 http://ftp.at.debian.org/debian/ unstable/main libdatrie1 mipsel 0.2.5-3 [28.1 kB]
-Get:32 http://ftp.at.debian.org/debian/ unstable/main libgfortran3 mipsel 4.7.0-2 [240 kB]
-Get:33 http://ftp.at.debian.org/debian/ unstable/main libgomp1 mipsel 4.7.0-2 [28.8 kB]
-Get:34 http://ftp.at.debian.org/debian/ unstable/main x11-common all 1:7.6+12 [283 kB]
-Get:35 http://ftp.at.debian.org/debian/ unstable/main libice6 mipsel 2:1.0.8-2 [56.7 kB]
-Get:36 http://ftp.at.debian.org/debian/ unstable/main libjpeg8 mipsel 8d-1 [145 kB]
-Get:37 http://ftp.at.debian.org/debian/ unstable/main libthai-data all 0.1.17-1 [205 kB]
-Get:38 http://ftp.at.debian.org/debian/ unstable/main libthai0 mipsel 0.1.17-1 [43.5 kB]
-Get:39 http://ftp.at.debian.org/debian/ unstable/main libxft2 mipsel 2.2.0-3 [56.8 kB]
-Get:40 http://ftp.at.debian.org/debian/ unstable/main fontconfig mipsel 2.8.0-3.1 [334 kB]
-Get:41 http://ftp.at.debian.org/debian/ unstable/main libpango1.0-0 mipsel 1.30.0-1 [439 kB]
-Get:42 http://ftp.at.debian.org/debian/ unstable/main libpcrecpp0 mipsel 1:8.30-4 [125 kB]
-Get:43 http://ftp.at.debian.org/debian/ unstable/main libsm6 mipsel 2:1.2.1-2 [32.5 kB]
-Get:44 http://ftp.at.debian.org/debian/ unstable/main libtiff4 mipsel 3.9.6-2 [192 kB]
-Get:45 http://ftp.at.debian.org/debian/ unstable/main libunistring0 mipsel 0.9.3-5 [407 kB]
-Get:46 http://ftp.at.debian.org/debian/ unstable/main libxext6 mipsel 2:1.3.0-3 [48.8 kB]
-Get:47 http://ftp.at.debian.org/debian/ unstable/main libxss1 mipsel 1:1.2.1-2 [16.5 kB]
-Get:48 http://ftp.at.debian.org/debian/ unstable/main libxt6 mipsel 1:1.1.1-2 [189 kB]
-Get:49 http://ftp.at.debian.org/debian/ unstable/main bsdmainutils mipsel 9.0.1 [206 kB]
-Get:50 http://ftp.at.debian.org/debian/ unstable/main groff-base mipsel 1.21-7 [1106 kB]
-Get:51 http://ftp.at.debian.org/debian/ unstable/main man-db mipsel 2.6.1-2 [1026 kB]
-Get:52 http://ftp.at.debian.org/debian/ unstable/main g++-4.6 mipsel 4.6.3-2 [6334 kB]
-Get:53 http://ftp.at.debian.org/debian/ unstable/main libstdc++6-4.6-dev mipsel 4.6.3-2 [1671 kB]
-Get:54 http://ftp.at.debian.org/debian/ unstable/main gcc-4.6 mipsel 4.6.3-2 [4062 kB]
-Get:55 http://ftp.at.debian.org/debian/ unstable/main cpp-4.6 mipsel 4.6.3-2 [3789 kB]
-Get:56 http://ftp.at.debian.org/debian/ unstable/main gcc-4.6-base mipsel 4.6.3-2 [139 kB]
-Get:57 http://ftp.at.debian.org/debian/ unstable/main file mipsel 5.11-1 [53.0 kB]
-Get:58 http://ftp.at.debian.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-5 [133 kB]
-Get:59 http://ftp.at.debian.org/debian/ unstable/main cdbs all 0.4.109 [79.4 kB]
-Get:60 http://ftp.at.debian.org/debian/ unstable/main cpp mipsel 4:4.6.3-4 [16.3 kB]
-Get:61 http://ftp.at.debian.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
-Get:62 http://ftp.at.debian.org/debian/ unstable/main gettext mipsel 0.18.1.1-5 [2008 kB]
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libncurses5 libstdc++6-4.6-dev
+ libtinfo5 ncurses-bin zlib1g
+9 upgraded, 79 newly installed, 0 to remove and 39 not upgraded.
+Need to get 69.6 MB of archives.
+After this operation, 114 MB of additional disk space will be used.
+Get:1 http://ftp.at.debian.org/debian/ unstable/main libtinfo5 mipsel 5.9+20130504-1 [287 kB]
+Get:2 http://ftp.at.debian.org/debian/ unstable/main libncurses5 mipsel 5.9+20130504-1 [99.9 kB]
+Get:3 http://ftp.at.debian.org/debian/ unstable/main ncurses-bin mipsel 5.9+20130504-1 [359 kB]
+Get:4 http://ftp.at.debian.org/debian/ unstable/main zlib1g mipsel 1:1.2.8.dfsg-1 [89.3 kB]
+Get:5 http://ftp.at.debian.org/debian/ unstable/main libasprintf0c2 mipsel 0.18.1.1-10 [27.1 kB]
+Get:6 http://ftp.at.debian.org/debian/ unstable/main libmagic1 mipsel 1:5.14-1 [217 kB]
+Get:7 http://ftp.at.debian.org/debian/ unstable/main libxml2 mipsel 2.8.0+dfsg1-7+nmu1 [868 kB]
+Get:8 http://ftp.at.debian.org/debian/ unstable/main libexpat1 mipsel 2.1.0-3 [144 kB]
+Get:9 http://ftp.at.debian.org/debian/ unstable/main libfreetype6 mipsel 2.4.9-1.1 [434 kB]
+Get:10 http://ftp.at.debian.org/debian/ unstable/main ucf all 3.0025+nmu3 [70.8 kB]
+Get:11 http://ftp.at.debian.org/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
+Get:12 http://ftp.at.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
+Get:13 http://ftp.at.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:14 http://ftp.at.debian.org/debian/ unstable/main libfontconfig1 mipsel 2.9.0-7.1 [301 kB]
+Get:15 http://ftp.at.debian.org/debian/ unstable/main libpixman-1-0 mipsel 0.26.0-4 [383 kB]
+Get:16 http://ftp.at.debian.org/debian/ unstable/main libpng12-0 mipsel 1.2.49-4 [185 kB]
+Get:17 http://ftp.at.debian.org/debian/ unstable/main libxau6 mipsel 1:1.0.7-1 [18.2 kB]
+Get:18 http://ftp.at.debian.org/debian/ unstable/main libxdmcp6 mipsel 1:1.1.1-1 [26.1 kB]
+Get:19 http://ftp.at.debian.org/debian/ unstable/main libxcb1 mipsel 1.8.1-2 [41.2 kB]
+Get:20 http://ftp.at.debian.org/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:21 http://ftp.at.debian.org/debian/ unstable/main libx11-6 mipsel 2:1.5.0-1 [868 kB]
+Get:22 http://ftp.at.debian.org/debian/ unstable/main libxcb-render0 mipsel 1.8.1-2 [16.3 kB]
+Get:23 http://ftp.at.debian.org/debian/ unstable/main libxcb-shm0 mipsel 1.8.1-2 [10.2 kB]
+Get:24 http://ftp.at.debian.org/debian/ unstable/main libxext6 mipsel 2:1.3.1-2 [51.3 kB]
+Get:25 http://ftp.at.debian.org/debian/ unstable/main libxrender1 mipsel 1:0.9.7-1 [30.6 kB]
+Get:26 http://ftp.at.debian.org/debian/ unstable/main libcairo2 mipsel 1.12.14-4 [1015 kB]
+Get:27 http://ftp.at.debian.org/debian/ unstable/main libffi6 mipsel 3.0.13-4 [19.9 kB]
+Get:28 http://ftp.at.debian.org/debian/ unstable/main libglib2.0-0 mipsel 2.36.1-2build1 [1906 kB]
+Get:29 http://ftp.at.debian.org/debian/ unstable/main libcroco3 mipsel 0.6.8-2 [120 kB]
+Get:30 http://ftp.at.debian.org/debian/ unstable/main libdatrie1 mipsel 0.2.6-2 [29.2 kB]
+Get:31 http://ftp.at.debian.org/debian/ unstable/main libunistring0 mipsel 0.9.3-5 [407 kB]
+Get:32 http://ftp.at.debian.org/debian/ unstable/main libgettextpo0 mipsel 0.18.1.1-10 [140 kB]
+Get:33 http://ftp.at.debian.org/debian/ unstable/main gcc-4.8-base mipsel 4.8.0-7 [148 kB]
+Get:34 http://ftp.at.debian.org/debian/ unstable/main libgfortran3 mipsel 4.8.0-7 [237 kB]
+Get:35 http://ftp.at.debian.org/debian/ unstable/main x11-common all 1:7.7+3 [284 kB]
+Get:36 http://ftp.at.debian.org/debian/ unstable/main libice6 mipsel 2:1.0.8-2 [56.7 kB]
+Get:37 http://ftp.at.debian.org/debian/ unstable/main libjpeg8 mipsel 8d-1 [145 kB]
+Get:38 http://ftp.at.debian.org/debian/ unstable/main libthai-data all 0.1.19-2 [156 kB]
+Get:39 http://ftp.at.debian.org/debian/ unstable/main libthai0 mipsel 0.1.19-2 [41.6 kB]
+Get:40 http://ftp.at.debian.org/debian/ unstable/main libxft2 mipsel 2.3.1-1 [59.8 kB]
+Get:41 http://ftp.at.debian.org/debian/ unstable/main fontconfig mipsel 2.9.0-7.1 [348 kB]
+Get:42 http://ftp.at.debian.org/debian/ unstable/main libpango1.0-0 mipsel 1.30.0-1 [439 kB]
+Get:43 http://ftp.at.debian.org/debian/ unstable/main libpaper1 mipsel 1.1.24+nmu2 [21.4 kB]
+Get:44 http://ftp.at.debian.org/debian/ unstable/main libpcrecpp0 mipsel 1:8.31-2 [127 kB]
+Get:45 http://ftp.at.debian.org/debian/ unstable/main libsm6 mipsel 2:1.2.1-2 [32.5 kB]
+Get:46 http://ftp.at.debian.org/debian/ unstable/main libjbig0 mipsel 2.0-2 [32.4 kB]
+Get:47 http://ftp.at.debian.org/debian/ unstable/main libtiff5 mipsel 4.0.2-6 [229 kB]
+Get:48 http://ftp.at.debian.org/debian/ unstable/main libxss1 mipsel 1:1.2.2-1 [17.3 kB]
+Get:49 http://ftp.at.debian.org/debian/ unstable/main libxt6 mipsel 1:1.1.3-1 [192 kB]
+Get:50 http://ftp.at.debian.org/debian/ unstable/main libmpc3 mipsel 1.0.1-1 [40.4 kB]
+Get:51 http://ftp.at.debian.org/debian/ unstable/main file mipsel 1:5.14-1 [53.9 kB]
+Get:52 http://ftp.at.debian.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-10 [148 kB]
+Get:53 http://ftp.at.debian.org/debian/ unstable/main cdbs all 0.4.121 [80.5 kB]
+Get:54 http://ftp.at.debian.org/debian/ unstable/main libstdc++6-4.6-dev mipsel 4.6.4-2 [1698 kB]
+Get:55 http://ftp.at.debian.org/debian/ unstable/main g++-4.6 mipsel 4.6.4-2 [4089 kB]
+Get:56 http://ftp.at.debian.org/debian/ unstable/main gcc-4.6 mipsel 4.6.4-2 [3990 kB]
+Get:57 http://ftp.at.debian.org/debian/ unstable/main cpp-4.6 mipsel 4.6.4-2 [3713 kB]
+Get:58 http://ftp.at.debian.org/debian/ unstable/main gcc-4.6-base mipsel 4.6.4-2 [143 kB]
+Get:59 http://ftp.at.debian.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
+Get:60 http://ftp.at.debian.org/debian/ unstable/main libasprintf-dev mipsel 0.18.1.1-10 [26.9 kB]
+Get:61 http://ftp.at.debian.org/debian/ unstable/main libgettextpo-dev mipsel 0.18.1.1-10 [188 kB]
+Get:62 http://ftp.at.debian.org/debian/ unstable/main gettext mipsel 0.18.1.1-10 [1734 kB]
Get:63 http://ftp.at.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
Get:64 http://ftp.at.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:65 http://ftp.at.debian.org/debian/ unstable/main debhelper all 9.20120410 [694 kB]
-Get:66 http://ftp.at.debian.org/debian/ unstable/main dpatch all 2.0.35 [95.2 kB]
-Get:67 http://ftp.at.debian.org/debian/ unstable/main gcc mipsel 4:4.6.3-4 [5026 B]
-Get:68 http://ftp.at.debian.org/debian/ unstable/main gfortran-4.6 mipsel 4.6.3-2 [4390 kB]
-Get:69 http://ftp.at.debian.org/debian/ unstable/main gfortran mipsel 4:4.6.3-4 [1134 B]
-Get:70 http://ftp.at.debian.org/debian/ unstable/main libblas3gf mipsel 1.2.20110419-2 [203 kB]
-Get:71 http://ftp.at.debian.org/debian/ unstable/main libblas-dev mipsel 1.2.20110419-2 [244 kB]
-Get:72 http://ftp.at.debian.org/debian/ unstable/main libbz2-dev mipsel 1.0.6-1 [37.2 kB]
-Get:73 http://ftp.at.debian.org/debian/ unstable/main libjpeg8-dev mipsel 8d-1 [257 kB]
-Get:74 http://ftp.at.debian.org/debian/ unstable/main liblapack3gf mipsel 3.3.1-1 [4277 kB]
-Get:75 http://ftp.at.debian.org/debian/ unstable/main liblapack-dev mipsel 3.3.1-1 [4906 kB]
-Get:76 http://ftp.at.debian.org/debian/ unstable/main libtinfo-dev mipsel 5.9-6 [102 kB]
-Get:77 http://ftp.at.debian.org/debian/ unstable/main libncurses5-dev mipsel 5.9-6 [403 kB]
-Get:78 http://ftp.at.debian.org/debian/ unstable/main libpaper1 mipsel 1.1.24+nmu1 [21.2 kB]
-Get:79 http://ftp.at.debian.org/debian/ unstable/main libpaper-utils mipsel 1.1.24+nmu1 [18.2 kB]
-Get:80 http://ftp.at.debian.org/debian/ unstable/main libpcre3-dev mipsel 1:8.30-4 [357 kB]
-Get:81 http://ftp.at.debian.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.6.dfsg-2 [212 kB]
-Get:82 http://ftp.at.debian.org/debian/ unstable/main libpng12-dev mipsel 1.2.49-1 [275 kB]
-Get:83 http://ftp.at.debian.org/debian/ unstable/main libreadline6-dev mipsel 6.2-8 [270 kB]
-Get:84 http://ftp.at.debian.org/debian/ unstable/main libreadline-dev mipsel 6.2-8 [892 B]
-Get:85 http://ftp.at.debian.org/debian/ unstable/main zip mipsel 3.0-4 [334 kB]
-Get:86 http://ftp.at.debian.org/debian/ unstable/main unzip mipsel 6.0-6 [189 kB]
-Get:87 http://ftp.at.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB]
-Get:88 http://ftp.at.debian.org/debian/ unstable/main tcl8.5 mipsel 8.5.11-1 [1613 kB]
-Get:89 http://ftp.at.debian.org/debian/ unstable/main tk8.5 mipsel 8.5.11-1 [1170 kB]
-Get:90 http://ftp.at.debian.org/debian/ unstable/main r-base-core mipsel 2.15.0-1 [19.9 MB]
-Get:91 http://ftp.at.debian.org/debian/ unstable/main r-base-dev all 2.15.0-1 [3900 B]
+Get:65 http://ftp.at.debian.org/debian/ unstable/main debhelper all 9.20130516 [708 kB]
+Get:66 http://ftp.at.debian.org/debian/ unstable/main gfortran-4.6 mipsel 4.6.4-2 [4314 kB]
+Get:67 http://ftp.at.debian.org/debian/ unstable/main gfortran mipsel 4:4.6.3-8 [1142 B]
+Get:68 http://ftp.at.debian.org/debian/ unstable/main libblas3 mipsel 1.2.20110419-5 [202 kB]
+Get:69 http://ftp.at.debian.org/debian/ unstable/main libblas-dev mipsel 1.2.20110419-5 [241 kB]
+Get:70 http://ftp.at.debian.org/debian/ unstable/main libbz2-dev mipsel 1.0.6-4 [37.3 kB]
+Get:71 http://ftp.at.debian.org/debian/ unstable/main libjpeg8-dev mipsel 8d-1 [257 kB]
+Get:72 http://ftp.at.debian.org/debian/ unstable/main liblapack3 mipsel 3.4.2+dfsg-1 [4388 kB]
+Get:73 http://ftp.at.debian.org/debian/ unstable/main liblapack-dev mipsel 3.4.2+dfsg-1 [5139 kB]
+Get:74 http://ftp.at.debian.org/debian/ unstable/main libtinfo-dev mipsel 5.9+20130504-1 [105 kB]
+Get:75 http://ftp.at.debian.org/debian/ unstable/main libncurses5-dev mipsel 5.9+20130504-1 [226 kB]
+Get:76 http://ftp.at.debian.org/debian/ unstable/main libpaper-utils mipsel 1.1.24+nmu2 [18.3 kB]
+Get:77 http://ftp.at.debian.org/debian/ unstable/main libpcre3-dev mipsel 1:8.31-2 [365 kB]
+Get:78 http://ftp.at.debian.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.8.dfsg-1 [216 kB]
+Get:79 http://ftp.at.debian.org/debian/ unstable/main libpng12-dev mipsel 1.2.49-4 [275 kB]
+Get:80 http://ftp.at.debian.org/debian/ unstable/main libreadline6-dev mipsel 6.2+dfsg-0.1 [199 kB]
+Get:81 http://ftp.at.debian.org/debian/ unstable/main libreadline-dev mipsel 6.2+dfsg-0.1 [896 B]
+Get:82 http://ftp.at.debian.org/debian/ unstable/main zip mipsel 3.0-7 [334 kB]
+Get:83 http://ftp.at.debian.org/debian/ unstable/main unzip mipsel 6.0-9 [189 kB]
+Get:84 http://ftp.at.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:85 http://ftp.at.debian.org/debian/ unstable/main tcl8.5 mipsel 8.5.11-2 [1612 kB]
+Get:86 http://ftp.at.debian.org/debian/ unstable/main tk8.5 mipsel 8.5.11-2 [1167 kB]
+Get:87 http://ftp.at.debian.org/debian/ unstable/main r-base-core mipsel 3.0.1~20130512-1 [21.0 MB]
+Get:88 http://ftp.at.debian.org/debian/ unstable/main r-base-dev all 3.0.1~20130512-1 [3910 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 74.2 MB in 21s (3414 kB/s)
-(Reading database ... 10674 files and directories currently installed.)
-Preparing to replace ncurses-bin 5.9-4 (using .../ncurses-bin_5.9-6_mipsel.deb) ...
+Fetched 69.6 MB in 33s (2063 kB/s)
+(Reading database ... 11331 files and directories currently installed.)
+Preparing to replace libtinfo5:mipsel 5.9-10 (using .../libtinfo5_5.9+20130504-1_mipsel.deb) ...
+Unpacking replacement libtinfo5:mipsel ...
+Setting up libtinfo5:mipsel (5.9+20130504-1) ...
+(Reading database ... 11331 files and directories currently installed.)
+Preparing to replace libncurses5:mipsel 5.9-10 (using .../libncurses5_5.9+20130504-1_mipsel.deb) ...
+Unpacking replacement libncurses5:mipsel ...
+Setting up libncurses5:mipsel (5.9+20130504-1) ...
+(Reading database ... 11331 files and directories currently installed.)
+Preparing to replace ncurses-bin 5.9-10 (using .../ncurses-bin_5.9+20130504-1_mipsel.deb) ...
Unpacking replacement ncurses-bin ...
-Setting up ncurses-bin (5.9-6) ...
-Selecting previously unselected package gcc-4.7-base.
-(Reading database ... 10674 files and directories currently installed.)
-Unpacking gcc-4.7-base (from .../gcc-4.7-base_4.7.0-2_mipsel.deb) ...
-Setting up gcc-4.7-base (4.7.0-2) ...
-(Reading database ... 10682 files and directories currently installed.)
-Preparing to replace libgcc1 1:4.6.2-12 (using .../libgcc1_1%3a4.7.0-2_mipsel.deb) ...
-Unpacking replacement libgcc1 ...
-Setting up libgcc1 (1:4.7.0-2) ...
-(Reading database ... 10682 files and directories currently installed.)
-Preparing to replace libstdc++6 4.6.2-12 (using .../libstdc++6_4.7.0-2_mipsel.deb) ...
-Unpacking replacement libstdc++6 ...
-Setting up libstdc++6 (4.7.0-2) ...
-(Reading database ... 10682 files and directories currently installed.)
-Preparing to replace libtinfo5 5.9-4 (using .../libtinfo5_5.9-6_mipsel.deb) ...
-Unpacking replacement libtinfo5 ...
-Setting up libtinfo5 (5.9-6) ...
-(Reading database ... 10682 files and directories currently installed.)
-Preparing to replace libncurses5 5.9-4 (using .../libncurses5_5.9-6_mipsel.deb) ...
-Unpacking replacement libncurses5 ...
-Setting up libncurses5 (5.9-6) ...
-(Reading database ... 10682 files and directories currently installed.)
-Preparing to replace zlib1g 1:1.2.3.4.dfsg-3 (using .../zlib1g_1%3a1.2.6.dfsg-2_mipsel.deb) ...
-Unpacking replacement zlib1g ...
-Setting up zlib1g (1:1.2.6.dfsg-2) ...
-Selecting previously unselected package libpipeline1.
-(Reading database ... 10682 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_mipsel.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.11-1_mipsel.deb) ...
-Selecting previously unselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_1%3a8.30-4_mipsel.deb) ...
-Selecting previously unselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.1.0-1_mipsel.deb) ...
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Selecting previously unselected package file.
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Selecting previously unselected package cdbs.
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Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_mipsel.deb) ...
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Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-5_mipsel.deb) ...
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Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
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-Preparing to replace gcc 4:4.6.2-4 (using .../gcc_4%3a4.6.3-4_mipsel.deb) ...
-Removing old gcc doc directory.
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Selecting previously unselected package gfortran-4.6.
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Selecting previously unselected package gfortran.
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+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
Selecting previously unselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_mipsel.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_mipsel.deb) ...
Selecting previously unselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.11-1_mipsel.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_mipsel.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.15.0-1_mipsel.deb) ...
+Unpacking r-base-core (from .../r-base-core_3.0.1~20130512-1_mipsel.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.15.0-1_all.deb) ...
-Setting up libpipeline1 (1.2.1-1) ...
-Setting up libmagic1 (5.11-1) ...
-Setting up libpcre3 (1:8.30-4) ...
-Setting up libexpat1 (2.1.0-1) ...
-Setting up libfreetype6 (2.4.9-1) ...
-Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3.1) ...
-Setting up libfontconfig1 (2.8.0-3.1) ...
-Setting up libpixman-1-0 (0.24.4-1) ...
-Setting up libpng12-0 (1.2.49-1) ...
-Setting up libxau6 (1:1.0.7-1) ...
-Setting up libxdmcp6 (1:1.1.0-4) ...
-Setting up libxcb1 (1.8.1-1) ...
-Setting up libx11-data (2:1.4.4-4) ...
-Setting up libx11-6 (2:1.4.4-4) ...
-Setting up libxcb-render0 (1.8.1-1) ...
-Setting up libxcb-shm0 (1.8.1-1) ...
-Setting up libxrender1 (1:0.9.6-2) ...
-Setting up libcairo2 (1.12.0-2) ...
-Setting up libffi5 (3.0.10-3) ...
-Setting up libglib2.0-0 (2.32.0-3) ...
+Unpacking r-base-dev (from .../r-base-dev_3.0.1~20130512-1_all.deb) ...
+Processing triggers for man-db ...
+Setting up libasprintf0c2:mipsel (0.18.1.1-10) ...
+Setting up libmagic1:mipsel (1:5.14-1) ...
+Setting up libxml2:mipsel (2.8.0+dfsg1-7+nmu1) ...
+Setting up libexpat1:mipsel (2.1.0-3) ...
+Setting up libfreetype6:mipsel (2.4.9-1.1) ...
+Setting up ucf (3.0025+nmu3) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:mipsel (2.9.0-7.1) ...
+Setting up libpixman-1-0:mipsel (0.26.0-4) ...
+Setting up libpng12-0:mipsel (1.2.49-4) ...
+Setting up libxau6:mipsel (1:1.0.7-1) ...
+Setting up libxdmcp6:mipsel (1:1.1.1-1) ...
+Setting up libxcb1:mipsel (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:mipsel (2:1.5.0-1) ...
+Setting up libxcb-render0:mipsel (1.8.1-2) ...
+Setting up libxcb-shm0:mipsel (1.8.1-2) ...
+Setting up libxext6:mipsel (2:1.3.1-2) ...
+Setting up libxrender1:mipsel (1:0.9.7-1) ...
+Setting up libcairo2:mipsel (1.12.14-4) ...
+Setting up libffi6:mipsel (3.0.13-4) ...
+Setting up libglib2.0-0:mipsel (2.36.1-2build1) ...
No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-7) ...
-Setting up libcroco3 (0.6.5-1) ...
-Setting up libdatrie1 (0.2.5-3) ...
-Setting up libgfortran3 (4.7.0-2) ...
-Setting up libgomp1 (4.7.0-2) ...
-Setting up x11-common (1:7.6+12) ...
+Setting up libcroco3:mipsel (0.6.8-2) ...
+Setting up libdatrie1:mipsel (0.2.6-2) ...
+Setting up libunistring0:mipsel (0.9.3-5) ...
+Setting up libgettextpo0:mipsel (0.18.1.1-10) ...
+Setting up gcc-4.8-base:mipsel (4.8.0-7) ...
+Setting up libgfortran3:mipsel (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6 (2:1.0.8-2) ...
-Setting up libjpeg8 (8d-1) ...
-Setting up libthai-data (0.1.17-1) ...
-Setting up libthai0 (0.1.17-1) ...
-Setting up libxft2 (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3.1) ...
-Cleaning up old fontconfig caches... done.
+Setting up libice6:mipsel (2:1.0.8-2) ...
+Setting up libjpeg8:mipsel (8d-1) ...
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:mipsel (0.1.19-2) ...
+Setting up libxft2:mipsel (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.30.0-1) ...
-Setting up libpcrecpp0 (1:8.30-4) ...
-Setting up libsm6 (2:1.2.1-2) ...
-Setting up libtiff4 (3.9.6-2) ...
-Setting up libunistring0 (0.9.3-5) ...
-Setting up libxext6 (2:1.3.0-3) ...
-Setting up libxss1 (1:1.2.1-2) ...
-Setting up libxt6 (1:1.1.1-2) ...
-Setting up bsdmainutils (9.0.1) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
-Building database of manual pages ...
-Setting up gcc-4.6-base (4.6.3-2) ...
-Setting up cpp-4.6 (4.6.3-2) ...
-Setting up gcc-4.6 (4.6.3-2) ...
-Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.109) ...
-Setting up cpp (4:4.6.3-4) ...
+Setting up libpango1.0-0:mipsel (1.30.0-1) ...
+Setting up libpaper1:mipsel (1.1.24+nmu2) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpcrecpp0:mipsel (1:8.31-2) ...
+Setting up libsm6:mipsel (2:1.2.1-2) ...
+Setting up libjbig0:mipsel (2.0-2) ...
+Setting up libtiff5:mipsel (4.0.2-6) ...
+Setting up libxss1:mipsel (1:1.2.2-1) ...
+Setting up libxt6:mipsel (1:1.1.3-1) ...
+Setting up libmpc3:mipsel (1.0.1-1) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
+Setting up gcc-4.6-base:mipsel (4.6.4-2) ...
+Setting up cpp-4.6 (4.6.4-2) ...
+Setting up gcc-4.6 (4.6.4-2) ...
Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-5) ...
+Setting up libasprintf-dev:mipsel (0.18.1.1-10) ...
+Setting up libgettextpo-dev:mipsel (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120410) ...
-Setting up dpatch (2.0.35) ...
-Setting up gcc (4:4.6.3-4) ...
-Setting up gfortran-4.6 (4.6.3-2) ...
-Setting up gfortran (4:4.6.3-4) ...
-update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.6-1) ...
-Setting up libjpeg8-dev (8d-1) ...
-Setting up liblapack3gf (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev (5.9-6) ...
-Setting up libncurses5-dev (5.9-6) ...
-Setting up libpaper1 (1.1.24+nmu1) ...
-
-Creating config file /etc/papersize with new version
-Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcre3-dev (1:8.30-4) ...
-Setting up zlib1g-dev (1:1.2.6.dfsg-2) ...
-Setting up libpng12-dev (1.2.49-1) ...
-Setting up libreadline6-dev (6.2-8) ...
-Setting up libreadline-dev (6.2-8) ...
-Setting up zip (3.0-4) ...
-Setting up unzip (6.0-6) ...
-Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
-Setting up tcl8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.15.0-1) ...
-Setting R_PAPERSIZE_USER default to 'a4'
+Setting up debhelper (9.20130516) ...
+Setting up gfortran-4.6 (4.6.4-2) ...
+Setting up gfortran (4:4.6.3-8) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:mipsel (1.0.6-4) ...
+Setting up libjpeg8-dev:mipsel (8d-1) ...
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:mipsel (5.9+20130504-1) ...
+Setting up libncurses5-dev:mipsel (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:mipsel (1:8.31-2) ...
+Setting up zlib1g-dev:mipsel (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:mipsel (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:mipsel (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.1~20130512-1) ...
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.15.0-1) ...
-Setting up g++-4.6 (4.6.3-2) ...
-Setting up libstdc++6-4.6-dev (4.6.3-2) ...
+Setting up r-base-dev (3.0.1~20130512-1) ...
+Setting up g++-4.6 (4.6.4-2) ...
+Setting up libstdc++6-4.6-dev (4.6.4-2) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 54 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 39 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.39-3-loongson-2e mipsel (mips64)
-Toolchain package versions: binutils_2.22-5 dpkg-dev_1.16.1.2 g++-4.6_4.6.3-2 gcc-4.6_4.6.3-2 libc6-dev_2.13-26 libstdc++6_4.7.0-2 libstdc++6-4.6-dev_4.6.3-2 linux-libc-dev_3.2.4-1
-Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-5 bsdmainutils_9.0.1 bsdutils_1:2.20.1-1.2 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.109 coreutils_8.13-3 cpp_4:4.6.3-4 cpp-4.6_4.6.3-2 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_9.20120410 debian-archive-keyring_2010.08.28 debianutils_4.2.1 diffutils_1:3.2-1 dpatch_2.0.35 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.11-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.2-4 g++-4.6_4.6.3-2 gcc_4:4.6.3-4 gcc-4.4-base_4.4.6-14 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-2 gcc-4.6-base_4.6.3-2 gcc-4.7-base_4.7.0-2 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.3-4 gfortran-4.6_4.6.3-2 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.10-1 groff-base_1.21-7 gzip_1.4-2 hostname_3.10 html2text_1.3.2a-15 initscripts_2.88dsf-22 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-1.2 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-26 libc-dev-bin_2.13-26 libc6_2.13-26 libc6-dev_2.13-26 libcairo2_1.12.0-2 libclass-isa-perl_0.36-3 libcomerr2_1.42-1 libcroco3_0.6.5-1 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libexpat1_2.1.0-1 libffi5_3.0.10-3 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-2 libgdbm3_1.8.3-10 libgfortran3_4.7.0-2 libglib2.0-0_2.32.0-3 libgmp10_2:5.0.3+dfsg-1 libgomp1_4.7.0-2 libice6_2:1.0.8-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-1.2 libmpc2_0.9-4 libmpfr4_3.1.0-3 libncurses5_5.9-6 libncurses5-dev_5.9-6 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_1:8.30-4 libpcre3-dev_1:8.30-4 libpcrecpp0_1:8.30-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.49-1 libpng12-dev_1.2.49-1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.0-4.1 libsepol1_2.1.0-1.2 libslang2_2.2.4-6 libsm6_2:1.2.1-2 libss2_1.42-1 libstdc++6_4.7.0-2 libstdc++6-4.6-dev_4.6.3-2 libswitch-perl_2.16-2 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-6 libtinfo5_5.9-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-1.2 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.2.4-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28.1 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-16 mount_2.20.1-1.2 multiarch-support_2.13-26 ncurses-base_5.9-4 ncurses-bin_5.9-6 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-3 perl_5.14.2-7 perl-base_5.14.2-7 perl-modules_5.14.2-7 po-debconf_1.0.16+nmu2 r-base-core_2.15.0-1 r-base-dev_2.15.0-1 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22 sysvinit_2.88dsf-22 sysvinit-utils_2.88dsf-22 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2011n-2 ucf_3.0025+nmu2 unzip_6.0-6 util-linux_2.20.1-1.2 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.6_4.6.4-2 gcc-4.6_4.6.4-2 libc6-dev_2.13-38 libstdc++6_4.7.2-5 libstdc++6-4.6-dev_4.6.4-2 linux-libc-dev_3.2.39-2
+Package versions: apt_0.9.7.8 base-files_7.1 base-passwd_3.5.26 bash_4.2+dfsg-0.1 binutils_2.22-8 bsdmainutils_9.0.4 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.20-3 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2 dash_0.5.7-3 debconf_1.5.49 debfoster_2.7-1.2 debhelper_9.20130516 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-1 findutils_4.4.2-5 fontconfig_2.9.0-7.1 fontconfig-config_2.9.0-7.1 fonts-dejavu-core_2.33+svn2514-3 g++_4:4.6.3-8 g++-4.6_4.6.4-2 gcc_4:4.6.3-8 gcc-4.4-base_4.4.7-3 gcc-4.6_4.6.4-2 gcc-4.6-base_4.6.4-2 gcc-4.7-base_4.7.2-5 gcc-4.8-base_4.8.0-7 gettext_0.18.1.1-10 gettext-base_0.18.1.1-10 gfortran_4:4.6.3-8 gfortran-4.6_4.6.4-2 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.14-1 groff-base_1.22.2-1 gzip_1.5-1.1 hostname_3.12 html2text_1.3.2a-15 initscripts_2.88dsf-41 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7.8 libasprintf-dev_0.18.1.1-10 libasprintf0c2_0.18.1.1-10 libattr1_1:2.4.46-8 libblas-dev_1.2.20110419-5 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.3 libbz2-1.0_1.0.6-4 libbz2-dev_1.0.6-4 libc-bin_2.13-38 libc-dev-bin_2.13-38 libc6_2.13-38 libc6-dev_2.13-38 libcairo2_1.12.14-4 libclass-isa-perl_0.36-5 libcomerr2_1.42.5-1.1 libcroco3_0.6.8-2 libdatrie1_0.2.6-2 libdb5.1_5.1.29-5 libdpkg-perl_1.16.10 libexpat1_2.1.0-3 libffi6_3.0.13-4 libfile-fcntllock-perl_0.14-2 libfontconfig1_2.9.0-7.1 libfreetype6_2.4.9-1.1 libgc1c2_1:7.1-9.1 libgcc1_1:4.7.2-5 libgdbm3_1.8.3-11 libgettextpo-dev_0.18.1.1-10 libgettextpo0_0.18.1.1-10 libgfortran3_4.8.0-7 libglib2.0-0_2.36.1-2build1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.2-5 libice6_2:1.0.8-2 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.4.2+dfsg-1 liblapack3_3.4.2+dfsg-1 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-1 libmount1_2.20.1-5.3 libmpc2_0.9-4 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libncurses5_5.9+20130504-1 libncurses5-dev_5.9+20130504-1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.31-2 libpcre3-dev_1:8.31-2 libpcrecpp0_1:8.31-2 libpipeline1_1.2.2-1 libpixman-1-0_0.26.0-4 libpng12-0_1.2.49-4 libpng12-dev_1.2.49-4 libreadline-dev_6.2+dfsg-0.1 libreadline6_6.2+dfsg-0.1 libreadline6-dev_6.2+dfsg-0.1 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libss2_1.42.5-1.1 libstdc++6_4.7.2-5 libstdc++6-4.6-dev_4.6.4-2 libswitch-perl_2.16-2 libthai-data_0.1.19-2 libthai0_0.1.19-2 libtiff5_4.0.2-6 libtimedate-perl_1.2000-1 libtinfo-dev_5.9+20130504-1 libtinfo5_5.9+20130504-1 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23+nmu1 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.3 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-2 libxcb-shm0_1.8.1-2 libxcb1_1.8.1-2 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-7+nmu1 libxrender1_1:0.9.7-1 libxss1_1:1.2.2-1 libxt6_1:1.1.3-1 linux-libc-dev_3.2.39-2 login_1:4.1.5.1-1 lsb-base_4.1+Debian9 make_3.81-8.2 man-db_2.6.3-3 mawk_1.3.3-17 mount_2.20.1-5.3 multiarch-support_2.13-38 ncurses-base_5.9-10 ncurses-bin_5.9+20130504-1 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-20 perl-base_5.14.2-20 perl-modules_5.14.2-20 po-debconf_1.0.16+nmu2 r-base-core_3.0.1~20130512-1 r-base-dev_3.0.1~20130512-1 readline-common_6.2+dfsg-0.1 sed_4.2.1-10 sensible-utils_0.0.7 sudo_1.8.5p2-1+nmu1 sysv-rc_2.88dsf-41 sysvinit_2.88dsf-41 sysvinit-utils_2.88dsf-41 tar_1.26+dfsg-0.1 tcl8.5_8.5.11-2 tk8.5_8.5.11-2 ttf-dejavu-core_2.33+svn2514-3 tzdata_2013b-1 ucf_3.0025+nmu3 unzip_6.0-9 util-linux_2.20.1-5.3 x11-common_1:7.7+3 xdg-utils_1.1.0~rc1+git20111210-7 xz-utils_5.1.1alpha+20120614-2 zip_3.0-7 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -628,12 +610,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Apr 12 02:45:32 2012 UTC using RSA key ID 2295D502
+gpgv: Signature made Thu May 16 14:46:42 2013 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.12.0~dfsg-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.12.0~dfsg
-dpkg-source: info: unpacking r-bioc-limma_3.12.0~dfsg.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.12.0~dfsg-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.16.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.16.3~dfsg
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg-1.debian.tar.gz
Check disc space
────────────────
@@ -643,27 +625,12 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.12.0~dfsg-1
- dpkg-source --before-build r-bioc-limma-3.12.0~dfsg
+dpkg-buildpackage: source version 3.16.3~dfsg-1
+ dpkg-source --before-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: host architecture mipsel
fakeroot debian/rules clean
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
-/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg'
-if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "reverse-patches" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-for dir in debian/patches ; do \
- rm -f $dir/*.log ; \
- done
dh_clean
rm -f debian/r-bioc-limma.substvars
rm -f debian/r-bioc-limma.*.debhelper
@@ -683,27 +650,10 @@ if test -d src; then \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
- debian/rules build
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+ debian/rules build-arch
test -x debian/rules
mkdir -p "."
-/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) insteadmake[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg'
-
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg'
-if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg'
fakeroot debian/rules binary-arch
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
@@ -715,26 +665,26 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
install -d debian/r-bioc-limma/usr/lib/R/site-library
-echo "R:Depends=r-base-core (>= 2.15.0-1)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 3.0.1~20130512-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g0 -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg/src'
-installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/src'
+installing to /build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -742,22 +692,27 @@ installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limm
*** installing help indices
** building package indices
** installing vignettes
- 'limma.Rnw'
** testing if installed package can be loaded
-
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/CITATION
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/doc/*
dh_installdocs -pr-bioc-limma
install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/doc/r-bioc-limma \;
+ cp -a debian/README.test debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ chown -R 0:0 debian/r-bioc-limma/usr/share/doc
+ chmod -R go=rX debian/r-bioc-limma/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-limma/usr/share/doc
install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
@@ -789,9 +744,9 @@ dh_strip -pr-bioc-limma
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
cd debian/r-bioc-limma
- chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
- gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
- cd '/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b/r-bioc-limma-3.12.0~dfsg'
+ chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save usr/share/doc/r-bioc-limma/changelog
+ gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save usr/share/doc/r-bioc-limma/changelog
+ cd '/build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S/r-bioc-limma-3.16.3~dfsg'
dh_fixperms -pr-bioc-limma
find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -821,62 +776,79 @@ dh_md5sums -pr-bioc-limma
chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
dpkg-deb --build debian/r-bioc-limma ..
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.12.0~dfsg-1_mipsel.deb'.
- dpkg-genchanges -B -mmipsel Build Daemon (eysler) <buildd_mipsel-eysler at buildd.debian.org> >../r-bioc-limma_3.12.0~dfsg-1_mipsel.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.16.3~dfsg-1_mipsel.deb'.
+ dpkg-genchanges -B -mmipsel Build Daemon (eysler) <buildd_mipsel-eysler at buildd.debian.org> >../r-bioc-limma_3.16.3~dfsg-1_mipsel.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.12.0~dfsg
+ dpkg-source --after-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120412-0509
+Build finished at 20130517-1831
-r-bioc-limma_3.12.0~dfsg-1_mipsel.changes:
+r-bioc-limma_3.16.3~dfsg-1_mipsel.changes:
Format: 1.8
-Date: Thu, 12 Apr 2012 11:40:40 +0900
+Date: Thu, 16 May 2013 15:16:13 +0200
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: mipsel
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
Distribution: sid
Urgency: low
Maintainer: mipsel Build Daemon (eysler) <buildd_mipsel-eysler at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.12.0~dfsg-1) unstable; urgency=low
+ r-bioc-limma (3.16.3~dfsg-1) unstable; urgency=low
.
[ Charles Plessy ]
- 2d3420e Imported Upstream version 3.12.0~dfsg
- 4bbb8e4 Document LIMMA's copyright as a whole.
+ ff8c6db Imported Upstream version 3.12.1~dfsg
+ b4f097e Effective license is GPL-2, without the '+', as R is GPL-2.
.
[ Andreas Tille ]
- 8a61a4c Obtain references from inst/CITATION
+ * Imported new upstream version 3.16.3~dfsg
+ * debian/control
+ - added myself to Uploaders
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - Fake normalisation as it is done by `cme fix dpkg-control`
+ (the command did actually no change - the control file was
+ brought into shape manually)
+ - Removed versioned dependency of r-base-dev
+ * debian/copyright:
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - checked new upstream version and bumped version number
+ - Add years to Copyright fields
+ * debian/rules: Remove executable flag from doc files
+ * debian/source/format: Add explicit source format specification
Checksums-Sha1:
- 51aa09c772e3c5510f3207dcbe29181953ad4abb 806304 r-bioc-limma_3.12.0~dfsg-1_mipsel.deb
+ f474bb4af7bd722d3dcb86a4395437cd76d853a0 1618156 r-bioc-limma_3.16.3~dfsg-1_mipsel.deb
Checksums-Sha256:
- 0c6604b3c9e483e70ff6a548bb04c45e314031b499c0184f26a2b6d32262eeec 806304 r-bioc-limma_3.12.0~dfsg-1_mipsel.deb
+ 069965fbe8f452bb699604f5a07c1f882ea0e1e0391dc2fcd07ceb95fb51376b 1618156 r-bioc-limma_3.16.3~dfsg-1_mipsel.deb
Files:
- a751dac436d9bce200b7b445102f1ef1 806304 gnu-r optional r-bioc-limma_3.12.0~dfsg-1_mipsel.deb
+ af1f5e65629acc4e07863f7193a399f4 1618156 gnu-r optional r-bioc-limma_3.16.3~dfsg-1_mipsel.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.12.0~dfsg-1_mipsel.deb
+r-bioc-limma_3.16.3~dfsg-1_mipsel.deb
─────────────────────────────────────
new debian package, version 2.0.
- size 806304 bytes: control archive= 1545 bytes.
- 774 bytes, 16 lines control
- 2290 bytes, 30 lines md5sums
+ size 1618156 bytes: control archive= 1678 bytes.
+ 783 bytes, 16 lines control
+ 2621 bytes, 34 lines md5sums
Package: r-bioc-limma
- Version: 3.12.0~dfsg-1
+ Version: 3.16.3~dfsg-1
Architecture: mipsel
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 984
- Depends: libc6 (>= 2.2), r-base-core (>= 2.15.0-1)
+ Installed-Size: 1847
+ Depends: libc6 (>= 2.2), r-base-core (>= 3.0.1~20130512-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -888,51 +860,56 @@ r-bioc-limma_3.12.0~dfsg-1_mipsel.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2012-04-12 05:08 ./
-drwxr-xr-x root/root 0 2012-04-12 05:08 ./usr/
-drwxr-xr-x root/root 0 2012-04-12 05:08 ./usr/share/
-drwxr-xr-x root/root 0 2012-04-12 05:08 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-04-12 05:09 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 27998 2012-03-30 22:32 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 264 2012-04-12 05:06 ./usr/share/doc/r-bioc-limma/README.Debian
--rw-r--r-- root/root 683 2012-04-12 05:06 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 2457 2012-04-12 05:06 ./usr/share/doc/r-bioc-limma/copyright
-drwxr-xr-x root/root 0 2012-04-12 05:07 ./usr/lib/
-drwxr-xr-x root/root 0 2012-04-12 05:07 ./usr/lib/R/
-drwxr-xr-x root/root 0 2012-04-12 05:08 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2012-04-12 05:08 ./usr/lib/R/site-library/limma/
-drwxr-xr-x root/root 0 2012-04-12 05:08 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 472367 2012-04-12 05:08 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 1372 2012-04-12 05:08 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 2431 2012-04-12 05:08 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 3334 2012-04-12 05:08 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 6317 2012-04-12 05:08 ./usr/lib/R/site-library/limma/help/AnIndex
-drwxr-xr-x root/root 0 2012-04-12 05:07 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 383 2012-04-12 05:07 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 202044 2012-04-12 05:07 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3819 2012-04-12 05:07 ./usr/lib/R/site-library/limma/R/limma.rdx
--rwxr-xr-x root/root 1230 2012-04-12 05:07 ./usr/lib/R/site-library/limma/CITATION
--rw-r--r-- root/root 9754 2012-04-12 05:08 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2012-04-12 05:08 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 91993 2012-04-12 05:07 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rw-r--r-- root/root 42743 2012-04-12 05:07 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 673 2012-04-12 05:07 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 1711 2012-04-12 05:07 ./usr/lib/R/site-library/limma/doc/limma.Rnw
-drwxr-xr-x root/root 0 2012-04-12 05:08 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 1179 2012-04-12 05:08 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 35015 2012-04-12 05:08 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 971 2012-04-12 05:07 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2012-04-12 05:08 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 521 2012-04-12 05:08 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 220 2012-04-12 05:08 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 2943 2012-04-12 05:08 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 5727 2012-04-12 05:08 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 1055 2012-04-12 05:07 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 6157 2012-04-12 05:08 ./usr/lib/R/site-library/limma/Meta/Rd.rds
-drwxr-xr-x root/root 0 2012-04-12 05:09 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 10704 2012-04-12 05:09 ./usr/lib/R/site-library/limma/libs/limma.so
--rw-r--r-- root/root 1901 2012-04-12 05:07 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 3989 2012-04-12 05:07 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2013-05-17 18:30 ./
+drwxr-xr-x root/root 0 2013-05-17 18:30 ./usr/
+drwxr-xr-x root/root 0 2013-05-17 18:30 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-17 18:30 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-17 18:31 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 31097 2013-05-02 00:02 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 264 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 1153 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2013-05-17 18:31 ./usr/share/doc/r-bioc-limma/tests/
+-rw-r--r-- root/root 2097 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.R.gz
+-rw-r--r-- root/root 14649 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save.gz
+-rw-r--r-- root/root 2605 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 437 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.test
+drwxr-xr-x root/root 0 2013-05-17 18:29 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-17 18:29 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-17 18:30 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-17 18:30 ./usr/lib/R/site-library/limma/
+drwxr-xr-x root/root 0 2013-05-17 18:30 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 494649 2013-05-17 18:30 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 1406 2013-05-17 18:30 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 2567 2013-05-17 18:30 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 3403 2013-05-17 18:30 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6703 2013-05-17 18:30 ./usr/lib/R/site-library/limma/help/AnIndex
+drwxr-xr-x root/root 0 2013-05-17 18:29 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 1056 2013-05-17 18:29 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 206554 2013-05-17 18:29 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 4116 2013-05-17 18:29 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 963 2013-05-17 18:29 ./usr/lib/R/site-library/limma/CITATION
+-rw-r--r-- root/root 10085 2013-05-17 18:30 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2013-05-17 18:30 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 102936 2013-05-17 18:29 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 45597 2013-05-17 18:29 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 673 2013-05-17 18:29 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 1711 2013-05-17 18:29 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 806089 2013-05-17 18:29 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+drwxr-xr-x root/root 0 2013-05-17 18:30 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2013-05-17 18:30 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 37337 2013-05-17 18:30 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 992 2013-05-17 18:29 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2013-05-17 18:30 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 541 2013-05-17 18:30 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 219 2013-05-17 18:30 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 3089 2013-05-17 18:30 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 5944 2013-05-17 18:30 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 1072 2013-05-17 18:29 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 6375 2013-05-17 18:30 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+drwxr-xr-x root/root 0 2013-05-17 18:31 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10704 2013-05-17 18:31 ./usr/lib/R/site-library/limma/libs/limma.so
+-rw-r--r-- root/root 2046 2013-05-17 18:29 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 11214 2013-05-17 18:29 ./usr/lib/R/site-library/limma/NEWS.Rd
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -946,7 +923,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-mipsel-sbuild-5b96f965-8ec0-4630-8a72-dc3bf7b7f74c/build/buildd-r-bioc-limma_3.12.0~dfsg-1-mipsel-ghcb_b
+Purging /var/lib/schroot/mount/sid-mipsel-sbuild-10ee009b-bf9f-41cc-8ef1-e3fdfcc5afaa/build/buildd-r-bioc-limma_3.16.3~dfsg-1-mipsel-rgDx7S
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -954,19 +931,19 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: mipsel
-Build-Space: 3268
-Build-Time: 145
+Build-Space: 5888
+Build-Time: 132
Distribution: sid
-Install-Time: 278
-Job: r-bioc-limma_3.12.0~dfsg-1
+Install-Time: 284
+Job: r-bioc-limma_3.16.3~dfsg-1
Package: r-bioc-limma
-Package-Time: 581
-Source-Version: 3.12.0~dfsg-1
-Space: 3268
+Package-Time: 563
+Source-Version: 3.16.3~dfsg-1
+Space: 5888
Status: successful
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120412-0509
-Build needed 00:09:41, 3268k disc space
-Signature with key '7550FB2E' requested:
+Finished at 20130517-1831
+Build needed 00:09:23, 5888k disc space
+Signature with key '6EE6C7C2' requested:
diff --git a/powerpc.log b/powerpc.log
index 42bad40..661e822 100644
--- a/powerpc.log
+++ b/powerpc.log
@@ -1,69 +1,63 @@
-From buildd at parry.debian.org Thu Apr 12 03:35:44 2012
-Return-path: <buildd at parry.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+From buildd at praetorius.debian.org Thu May 16 15:40:37 2013
+Return-path: <buildd at praetorius.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at parry.debian.org>)
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- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
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-Date: Thu, 12 Apr 2012 03:35:42 +0000
-Message-Id: <E1SIAow-000651-1s at parry.debian.org>
-From: buildd on parry <buildd at parry.debian.org>
-To: phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.12.0~dfsg-1 on powerpc
+ CN=praetorius.debian.org,
+ EMAIL=hostmaster at praetorius.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at praetorius.debian.org>)
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+Date: Thu, 16 May 2013 15:40:13 +0000
+Message-Id: <E1Ud0Ht-0004KF-Tu at praetorius.debian.org>
+From: buildd on praetorius <buildd at praetorius.debian.org>
+To: wouter at debian.org,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.16.3~dfsg-1 on powerpc
(dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on parry.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on praetorius.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.12.0~dfsg-1 (powerpc) 12 Apr 2012 03:31 ║
+║ r-bioc-limma 3.16.3~dfsg-1 (powerpc) 16 May 2013 15:35 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.12.0~dfsg-1
-Source Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
+Source Version: 3.16.3~dfsg-1
Architecture: powerpc
-Get:1 http://debian.osuosl.org unstable InRelease [208 kB]
-Get:2 http://debian.osuosl.org unstable/main Sources [6216 kB]
-Get:3 http://incoming.debian.org unstable InRelease [208 kB]
-Get:4 http://debian.osuosl.org unstable/contrib Sources [54.5 kB]
-Get:5 http://debian.osuosl.org unstable/non-free Sources [97.8 kB]
-Get:6 http://debian.osuosl.org unstable/main powerpc Packages [5871 kB]
-Get:7 http://debian.osuosl.org unstable/contrib powerpc Packages [36.9 kB]
-Ign http://debian.osuosl.org unstable/contrib TranslationIndex
-Get:8 http://debian.osuosl.org unstable/main TranslationIndex [2223 B]
-Get:9 http://debian.osuosl.org unstable/contrib Translation-en [37.0 kB]
-Get:10 http://debian.osuosl.org unstable/main Translation-en [3936 kB]
-Ign http://incoming.debian.org InRelease
-Get:11 http://incoming.debian.org Release.gpg [836 B]
-Get:12 http://incoming.debian.org unstable/main Sources [6221 kB]
-Get:13 http://incoming.debian.org unstable/contrib Sources [54.5 kB]
-Get:14 http://incoming.debian.org unstable/non-free Sources [97.7 kB]
-Get:15 http://incoming.debian.org unstable/main powerpc Packages [5871 kB]
-Get:16 http://incoming.debian.org unstable/contrib powerpc Packages [36.9 kB]
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:17 http://incoming.debian.org unstable/main TranslationIndex [2223 B]
-Get:18 http://incoming.debian.org Release [1601 B]
-Get:19 http://incoming.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:20 http://incoming.debian.org unstable/main Translation-en [3936 kB]
-Get:21 http://incoming.debian.org Sources [42.9 kB]
-Get:22 http://incoming.debian.org Packages [682 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 33.7 MB in 18s (1852 kB/s)
+Get:1 http://ftp.se.debian.org unstable InRelease [205 kB]
+Get:2 http://ftp.se.debian.org unstable/main Sources [6710 kB]
+Get:3 http://incoming.debian.org unstable InRelease [205 kB]
+Get:4 http://ftp.se.debian.org unstable/contrib Sources [53.3 kB]
+Get:5 http://ftp.se.debian.org unstable/non-free Sources [103 kB]
+Get:6 http://ftp.se.debian.org unstable/main powerpc Packages [6296 kB]
+Get:7 http://incoming.debian.org buildd-unstable InRelease [111 kB]
+Get:8 http://incoming.debian.org unstable/main Sources [6728 kB]
+Get:9 http://ftp.se.debian.org unstable/contrib powerpc Packages [37.1 kB]
+Get:10 http://incoming.debian.org unstable/contrib Sources [53.7 kB]
+Get:11 http://incoming.debian.org unstable/non-free Sources [102 kB]
+Get:12 http://incoming.debian.org unstable/main powerpc Packages [6284 kB]
+Get:13 http://incoming.debian.org unstable/contrib powerpc Packages [37.1 kB]
+Get:14 http://incoming.debian.org buildd-unstable/main Sources [119 kB]
+Get:15 http://incoming.debian.org buildd-unstable/contrib Sources [2481 B]
+Get:16 http://incoming.debian.org buildd-unstable/non-free Sources [2167 B]
+Get:17 http://incoming.debian.org buildd-unstable/main powerpc Packages [76.3 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib powerpc Packages [1481 B]
+Fetched 27.1 MB in 22s (1190 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -84,11 +78,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 288 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (dsc) [2030 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (tar) [283 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (diff) [3098 B]
-Fetched 288 kB in 0s (351 kB/s)
+Need to get 1058 kB of source archives.
+Get:1 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-bioc-limma 3.16.3~dfsg-1 (dsc) [1409 B]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-bioc-limma 3.16.3~dfsg-1 (tar) [1052 kB]
+Get:3 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-bioc-limma 3.16.3~dfsg-1 (diff) [4167 B]
+Fetched 1058 kB in 2s (441 kB/s)
Download complete and in download only mode
Check arch
@@ -102,516 +96,552 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.18.2-1)
+fakeroot: already installed (1.18.4-2)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 32 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 69 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 32 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 69 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev
Checking for already installed dependencies...
-base-files: already installed (6.7)
-base-passwd: already installed (3.5.24)
-bash: already installed (4.2-1)
-coreutils: already installed (8.13-3.1)
+base-files: already installed (7.1)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2-5.1)
+coreutils: already installed (8.13-3.2)
dash: already installed (0.5.7-3)
-debianutils: already installed (4.2.1)
-diffutils: already installed (1:3.2-2)
-dpkg: already installed (1.16.2)
-e2fsprogs: already installed (1.42.1-2)
-findutils: already installed (4.4.2-4)
-grep: already installed (2.10-1)
-gzip: already installed (1.4-5)
-hostname: already installed (3.11)
-ncurses-base: already installed (5.9-4)
-ncurses-bin: already installed (5.9-4)
-perl-base: already installed (5.14.2-9)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.5-1)
-sysvinit-utils: already installed (2.88dsf-22.1)
-sysvinit: already installed (2.88dsf-22.1)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-7)
+dpkg: already installed (1.16.9)
+e2fsprogs: already installed (1.42.5-1)
+findutils: already installed (4.4.2-5)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+ncurses-base: already installed (5.9-10)
+ncurses-bin: already installed (5.9-10)
+perl-base: already installed (5.14.2-16)
+sed: already installed (4.2.1-10)
+login: already installed (1:4.1.5.1-1)
+sysvinit-utils: already installed (2.88dsf-35)
+sysvinit: already installed (2.88dsf-35)
tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-4)
-mount: already installed (2.20.1-4)
-util-linux: already installed (2.20.1-4)
-libc6-dev: already installed (2.13-27)
-gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.2 >= 1.13.5 is satisfied)
+bsdutils: already installed (1:2.20.1-5.3)
+mount: already installed (2.20.1-5.3)
+util-linux: already installed (2.20.1-5.3)
+libc6-dev: already installed (2.13-37)
+gcc: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.9 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120410
+Using default version 9.20130509
cdbs: missing
r-base-dev: missing
-Using default version 2.15.0-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils cpp cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
- gcc gcc-4.6 gcc-4.6-base gcc-4.7-base gettext gettext-base gfortran
- gfortran-4.6 groff-base html2text intltool-debian libblas-dev libblas3gf
- libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1
- libfreetype6 libgcc1 libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5
- libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev
- libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
- libreadline-dev libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev
- libthai-data libthai0 libtiff4 libtinfo-dev libtinfo5 libunistring0 libx11-6
+ bsdmainutils cpp-4.6 file fontconfig fontconfig-config fonts-dejavu-core
+ g++-4.6 gcc-4.6 gcc-4.6-base gcc-4.8-base gettext gettext-base gfortran
+ gfortran-4.6 groff-base html2text intltool-debian libasprintf-dev
+ libasprintf0c2 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6 libc6-dev
+ libcairo2 libcroco3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6
+ libgettextpo-dev libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libmpc3 libmpfr4
+ libncurses5 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3
+ libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6 libreadline6-dev libsm6 libstdc++6-4.6-dev
+ libthai-data libthai0 libtiff5 libtinfo-dev libtinfo5 libunistring0 libx11-6
libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
libxft2 libxml2 libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf
- r-base-core tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common xdg-utils zip
- zlib1g-dev
+ r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+ zlib1g zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts cpp-doc gcc-4.6-locales dh-make
- curl defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-multilib
- manpages-dev autoconf automake1.9 libtool flex bison gdb gcc-doc
- gcc-4.6-multilib libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg
- libquadmath-dbg libmudflap0-dbg binutils-gold gettext-doc gfortran-multilib
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make
+ g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ libcloog-ppl0 libppl-c2 libppl7 binutils-gold gettext-doc gfortran-multilib
gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff
- ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp
+ glibc-doc ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp
ttf-arphic-gkai00mp ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser
libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base
texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
- texlive-latex-extra texinfo texi2html tclreadline gvfs-bin
+ texlive-latex-extra texinfo texi2html tcl-tclreadline gvfs-bin
Recommended packages:
- autotools-dev patchutils autopoint libglib2.0-data shared-mime-info libgpm2
- xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
- x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ autotools-dev curl wget lynx-cur autopoint manpages-dev libglib2.0-data
+ shared-mime-info libgpm2 xml-core libmail-sendmail-perl r-recommended
+ r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
- bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config
- gcc-4.7-base gettext gettext-base gfortran gfortran-4.6 groff-base html2text
- intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3
- libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6 libgfortran3
- libglib2.0-0 libice6 libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf
- libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
- libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
- libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
- libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
- libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
- libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core
- unzip x11-common xdg-utils zip zlib1g-dev
+ bsdmainutils cdbs debhelper file fontconfig fontconfig-config
+ fonts-dejavu-core gcc-4.8-base gettext gettext-base gfortran gfortran-4.6
+ groff-base html2text intltool-debian libasprintf-dev libasprintf0c2
+ libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libffi6 libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0
+ libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3 libmagic1 libmpc3 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 libx11-6
+ libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
+ libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
+ r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+ zlib1g-dev
The following packages will be upgraded:
- cpp cpp-4.6 g++-4.6 gcc gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libncurses5
- libpcre3 libstdc++6 libstdc++6-4.6-dev libtinfo5 ncurses-bin
-14 upgraded, 76 newly installed, 0 to remove and 18 not upgraded.
-Need to get 76.8 MB of archives.
-After this operation, 117 MB of additional disk space will be used.
-Get:1 http://debian.osuosl.org/debian/ unstable/main ncurses-bin powerpc 5.9-6 [331 kB]
-Get:2 http://debian.osuosl.org/debian/ unstable/main gcc-4.7-base powerpc 4.7.0-3 [139 kB]
-Get:3 http://debian.osuosl.org/debian/ unstable/main libgcc1 powerpc 1:4.7.0-3 [43.4 kB]
-Get:4 http://debian.osuosl.org/debian/ unstable/main libstdc++6 powerpc 4.7.0-3 [379 kB]
-Get:5 http://debian.osuosl.org/debian/ unstable/main libtinfo5 powerpc 5.9-6 [271 kB]
-Get:6 http://debian.osuosl.org/debian/ unstable/main libncurses5 powerpc 5.9-6 [289 kB]
-Get:7 http://debian.osuosl.org/debian/ unstable/main libpipeline1 powerpc 1.2.1-1 [38.5 kB]
-Get:8 http://debian.osuosl.org/debian/ unstable/main libmagic1 powerpc 5.11-1 [257 kB]
-Get:9 http://debian.osuosl.org/debian/ unstable/main libpcre3 powerpc 1:8.30-4 [241 kB]
-Get:10 http://debian.osuosl.org/debian/ unstable/main libexpat1 powerpc 2.1.0-1 [142 kB]
-Get:11 http://debian.osuosl.org/debian/ unstable/main libfreetype6 powerpc 2.4.9-1 [432 kB]
-Get:12 http://debian.osuosl.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:13 http://debian.osuosl.org/debian/ unstable/main fontconfig-config all 2.8.0-3.1 [219 kB]
-Get:14 http://debian.osuosl.org/debian/ unstable/main libfontconfig1 powerpc 2.8.0-3.1 [281 kB]
-Get:15 http://debian.osuosl.org/debian/ unstable/main libpixman-1-0 powerpc 0.24.4-1 [364 kB]
-Get:16 http://debian.osuosl.org/debian/ unstable/main libpng12-0 powerpc 1.2.49-1 [185 kB]
-Get:17 http://debian.osuosl.org/debian/ unstable/main libxau6 powerpc 1:1.0.7-1 [18.5 kB]
-Get:18 http://debian.osuosl.org/debian/ unstable/main libxdmcp6 powerpc 1:1.1.0-4 [23.0 kB]
-Get:19 http://debian.osuosl.org/debian/ unstable/main libxcb1 powerpc 1.8.1-1 [45.3 kB]
-Get:20 http://debian.osuosl.org/debian/ unstable/main libx11-data all 2:1.4.4-4 [187 kB]
-Get:21 http://debian.osuosl.org/debian/ unstable/main libx11-6 powerpc 2:1.4.4-4 [868 kB]
-Get:22 http://debian.osuosl.org/debian/ unstable/main libxcb-render0 powerpc 1.8.1-1 [17.2 kB]
-Get:23 http://debian.osuosl.org/debian/ unstable/main libxcb-shm0 powerpc 1.8.1-1 [10.1 kB]
-Get:24 http://debian.osuosl.org/debian/ unstable/main libxrender1 powerpc 1:0.9.6-2 [30.7 kB]
-Get:25 http://debian.osuosl.org/debian/ unstable/main libcairo2 powerpc 1.12.0-2 [882 kB]
-Get:26 http://debian.osuosl.org/debian/ unstable/main libffi5 powerpc 3.0.10-3 [25.5 kB]
-Get:27 http://debian.osuosl.org/debian/ unstable/main libglib2.0-0 powerpc 2.32.0-4 [2019 kB]
-Get:28 http://debian.osuosl.org/debian/ unstable/main libxml2 powerpc 2.7.8.dfsg-7 [842 kB]
-Get:29 http://debian.osuosl.org/debian/ unstable/main libcroco3 powerpc 0.6.5-1 [143 kB]
-Get:30 http://debian.osuosl.org/debian/ unstable/main libdatrie1 powerpc 0.2.5-3 [27.7 kB]
-Get:31 http://debian.osuosl.org/debian/ unstable/main libgfortran3 powerpc 4.7.0-3 [286 kB]
-Get:32 http://debian.osuosl.org/debian/ unstable/main libgomp1 powerpc 4.7.0-3 [29.1 kB]
-Get:33 http://debian.osuosl.org/debian/ unstable/main x11-common all 1:7.6+12 [283 kB]
-Get:34 http://debian.osuosl.org/debian/ unstable/main libice6 powerpc 2:1.0.7-2 [53.0 kB]
-Get:35 http://debian.osuosl.org/debian/ unstable/main libjpeg8 powerpc 8d-1 [130 kB]
-Get:36 http://debian.osuosl.org/debian/ unstable/main libthai-data all 0.1.17-1 [205 kB]
-Get:37 http://debian.osuosl.org/debian/ unstable/main libthai0 powerpc 0.1.17-1 [44.0 kB]
-Get:38 http://debian.osuosl.org/debian/ unstable/main libxft2 powerpc 2.2.0-3 [57.6 kB]
-Get:39 http://debian.osuosl.org/debian/ unstable/main fontconfig powerpc 2.8.0-3.1 [334 kB]
-Get:40 http://debian.osuosl.org/debian/ unstable/main libpango1.0-0 powerpc 1.30.0-1 [451 kB]
-Get:41 http://debian.osuosl.org/debian/ unstable/main libpcrecpp0 powerpc 1:8.30-4 [126 kB]
-Get:42 http://debian.osuosl.org/debian/ unstable/main libsm6 powerpc 2:1.2.1-2 [33.2 kB]
-Get:43 http://debian.osuosl.org/debian/ unstable/main libtiff4 powerpc 3.9.6-2 [200 kB]
-Get:44 http://debian.osuosl.org/debian/ unstable/main libunistring0 powerpc 0.9.3-5 [421 kB]
-Get:45 http://debian.osuosl.org/debian/ unstable/main libxext6 powerpc 2:1.3.0-3 [49.3 kB]
-Get:46 http://debian.osuosl.org/debian/ unstable/main libxss1 powerpc 1:1.2.1-2 [16.5 kB]
-Get:47 http://debian.osuosl.org/debian/ unstable/main libxt6 powerpc 1:1.1.1-2 [191 kB]
-Get:48 http://debian.osuosl.org/debian/ unstable/main bsdmainutils powerpc 9.0.1 [208 kB]
-Get:49 http://debian.osuosl.org/debian/ unstable/main groff-base powerpc 1.21-7 [1179 kB]
-Get:50 http://debian.osuosl.org/debian/ unstable/main man-db powerpc 2.6.1-2 [1054 kB]
-Get:51 http://debian.osuosl.org/debian/ unstable/main g++-4.6 powerpc 4.6.3-3 [6677 kB]
-Get:52 http://debian.osuosl.org/debian/ unstable/main libstdc++6-4.6-dev powerpc 4.6.3-3 [1696 kB]
-Get:53 http://debian.osuosl.org/debian/ unstable/main gcc-4.6 powerpc 4.6.3-3 [4961 kB]
-Get:54 http://debian.osuosl.org/debian/ unstable/main cpp-4.6 powerpc 4.6.3-3 [4619 kB]
-Get:55 http://debian.osuosl.org/debian/ unstable/main gcc-4.6-base powerpc 4.6.3-3 [140 kB]
-Get:56 http://debian.osuosl.org/debian/ unstable/main file powerpc 5.11-1 [53.1 kB]
-Get:57 http://debian.osuosl.org/debian/ unstable/main gettext-base powerpc 0.18.1.1-5 [132 kB]
-Get:58 http://debian.osuosl.org/debian/ unstable/main cdbs all 0.4.109 [79.4 kB]
-Get:59 http://debian.osuosl.org/debian/ unstable/main cpp powerpc 4:4.6.3-4 [16.4 kB]
-Get:60 http://debian.osuosl.org/debian/ unstable/main html2text powerpc 1.3.2a-15 [105 kB]
-Get:61 http://debian.osuosl.org/debian/ unstable/main gettext powerpc 0.18.1.1-5 [2036 kB]
-Get:62 http://debian.osuosl.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:63 http://debian.osuosl.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:64 http://debian.osuosl.org/debian/ unstable/main debhelper all 9.20120410 [694 kB]
-Get:65 http://debian.osuosl.org/debian/ unstable/main dpatch all 2.0.35 [95.2 kB]
-Get:66 http://debian.osuosl.org/debian/ unstable/main gcc powerpc 4:4.6.3-4 [5028 B]
-Get:67 http://debian.osuosl.org/debian/ unstable/main gfortran-4.6 powerpc 4.6.3-3 [5273 kB]
-Get:68 http://debian.osuosl.org/debian/ unstable/main gfortran powerpc 4:4.6.3-4 [1134 B]
-Get:69 http://debian.osuosl.org/debian/ unstable/main libblas3gf powerpc 1.2.20110419-2 [192 kB]
-Get:70 http://debian.osuosl.org/debian/ unstable/main libblas-dev powerpc 1.2.20110419-2 [206 kB]
-Get:71 http://debian.osuosl.org/debian/ unstable/main libbz2-dev powerpc 1.0.6-1 [34.5 kB]
-Get:72 http://debian.osuosl.org/debian/ unstable/main libjpeg8-dev powerpc 8d-1 [236 kB]
-Get:73 http://debian.osuosl.org/debian/ unstable/main liblapack3gf powerpc 3.3.1-1 [3956 kB]
-Get:74 http://debian.osuosl.org/debian/ unstable/main liblapack-dev powerpc 3.3.1-1 [4261 kB]
-Get:75 http://debian.osuosl.org/debian/ unstable/main libtinfo-dev powerpc 5.9-6 [105 kB]
-Get:76 http://debian.osuosl.org/debian/ unstable/main libncurses5-dev powerpc 5.9-6 [393 kB]
-Get:77 http://debian.osuosl.org/debian/ unstable/main libpaper1 powerpc 1.1.24+nmu1 [21.5 kB]
-Get:78 http://debian.osuosl.org/debian/ unstable/main libpaper-utils powerpc 1.1.24+nmu1 [18.0 kB]
-Get:79 http://debian.osuosl.org/debian/ unstable/main libpcre3-dev powerpc 1:8.30-4 [357 kB]
-Get:80 http://debian.osuosl.org/debian/ unstable/main zlib1g-dev powerpc 1:1.2.6.dfsg-2 [209 kB]
-Get:81 http://debian.osuosl.org/debian/ unstable/main libpng12-dev powerpc 1.2.49-1 [266 kB]
-Get:82 http://debian.osuosl.org/debian/ unstable/main libreadline6-dev powerpc 6.2-8 [258 kB]
-Get:83 http://debian.osuosl.org/debian/ unstable/main libreadline-dev powerpc 6.2-8 [896 B]
-Get:84 http://debian.osuosl.org/debian/ unstable/main zip powerpc 3.0-4 [340 kB]
-Get:85 http://debian.osuosl.org/debian/ unstable/main unzip powerpc 6.0-6 [190 kB]
-Get:86 http://debian.osuosl.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB]
-Get:87 http://debian.osuosl.org/debian/ unstable/main tcl8.5 powerpc 8.5.11-1 [1628 kB]
-Get:88 http://debian.osuosl.org/debian/ unstable/main tk8.5 powerpc 8.5.11-1 [1167 kB]
-Get:89 http://debian.osuosl.org/debian/ unstable/main r-base-core powerpc 2.15.0-1 [20.3 MB]
-Get:90 http://debian.osuosl.org/debian/ unstable/main r-base-dev all 2.15.0-1 [3900 B]
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libc-dev-bin libc6 libc6-dev libmpfr4
+ libncurses5 libreadline6 libstdc++6-4.6-dev libtinfo5 ncurses-bin zlib1g
+14 upgraded, 84 newly installed, 0 to remove and 55 not upgraded.
+Need to get 84.5 MB of archives.
+After this operation, 119 MB of additional disk space will be used.
+Get:1 http://ftp.se.debian.org/debian/ unstable/main libc6-dev powerpc 2.17-2 [2955 kB]
+Get:2 http://incoming.debian.org/debian/ unstable/main r-base-core powerpc 3.0.1-1 [21.4 MB]
+Get:3 http://ftp.se.debian.org/debian/ unstable/main libc-dev-bin powerpc 2.17-2 [231 kB]
+Get:4 http://ftp.se.debian.org/debian/ unstable/main libc6 powerpc 2.17-2 [4479 kB]
+Get:5 http://ftp.se.debian.org/debian/ unstable/main libtinfo5 powerpc 5.9+20130504-1 [293 kB]
+Get:6 http://ftp.se.debian.org/debian/ unstable/main libncurses5 powerpc 5.9+20130504-1 [105 kB]
+Get:7 http://ftp.se.debian.org/debian/ unstable/main ncurses-bin powerpc 5.9+20130504-1 [359 kB]
+Get:8 http://ftp.se.debian.org/debian/ unstable/main libreadline6 powerpc 6.2+dfsg-0.1 [154 kB]
+Get:9 http://ftp.se.debian.org/debian/ unstable/main zlib1g powerpc 1:1.2.8.dfsg-1 [88.3 kB]
+Get:10 http://ftp.se.debian.org/debian/ unstable/main libpipeline1 powerpc 1.2.3-1 [39.5 kB]
+Get:11 http://ftp.se.debian.org/debian/ unstable/main groff-base powerpc 1.22.2-2 [727 kB]
+Get:12 http://ftp.se.debian.org/debian/ unstable/main bsdmainutils powerpc 9.0.5 [211 kB]
+Get:13 http://ftp.se.debian.org/debian/ unstable/main man-db powerpc 2.6.3-6 [873 kB]
+Get:14 http://ftp.se.debian.org/debian/ unstable/main libasprintf0c2 powerpc 0.18.1.1-10 [27.4 kB]
+Get:15 http://ftp.se.debian.org/debian/ unstable/main libmagic1 powerpc 1:5.14-1 [215 kB]
+Get:16 http://ftp.se.debian.org/debian/ unstable/main libpcre3 powerpc 1:8.31-2 [246 kB]
+Get:17 http://ftp.se.debian.org/debian/ unstable/main libxml2 powerpc 2.8.0+dfsg1-7+nmu1 [852 kB]
+Get:18 http://ftp.se.debian.org/debian/ unstable/main libexpat1 powerpc 2.1.0-3 [143 kB]
+Get:19 http://ftp.se.debian.org/debian/ unstable/main libfreetype6 powerpc 2.4.9-1.1 [431 kB]
+Get:20 http://ftp.se.debian.org/debian/ unstable/main ucf all 3.0025+nmu3 [70.8 kB]
+Get:21 http://ftp.se.debian.org/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
+Get:22 http://ftp.se.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
+Get:23 http://ftp.se.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:24 http://ftp.se.debian.org/debian/ unstable/main libfontconfig1 powerpc 2.9.0-7.1 [297 kB]
+Get:25 http://ftp.se.debian.org/debian/ unstable/main libpixman-1-0 powerpc 0.26.0-4 [384 kB]
+Get:26 http://ftp.se.debian.org/debian/ unstable/main libpng12-0 powerpc 1.2.49-4 [186 kB]
+Get:27 http://ftp.se.debian.org/debian/ unstable/main libxau6 powerpc 1:1.0.7-1 [18.5 kB]
+Get:28 http://ftp.se.debian.org/debian/ unstable/main libxdmcp6 powerpc 1:1.1.1-1 [25.9 kB]
+Get:29 http://ftp.se.debian.org/debian/ unstable/main libxcb1 powerpc 1.8.1-2 [45.7 kB]
+Get:30 http://ftp.se.debian.org/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:31 http://ftp.se.debian.org/debian/ unstable/main libx11-6 powerpc 2:1.5.0-1 [880 kB]
+Get:32 http://ftp.se.debian.org/debian/ unstable/main libxcb-render0 powerpc 1.8.1-2 [17.4 kB]
+Get:33 http://ftp.se.debian.org/debian/ unstable/main libxcb-shm0 powerpc 1.8.1-2 [10.3 kB]
+Get:34 http://ftp.se.debian.org/debian/ unstable/main libxext6 powerpc 2:1.3.1-2 [52.1 kB]
+Get:35 http://ftp.se.debian.org/debian/ unstable/main libxrender1 powerpc 1:0.9.7-1 [31.6 kB]
+Get:36 http://ftp.se.debian.org/debian/ unstable/main libcairo2 powerpc 1.12.14-4 [993 kB]
+Get:37 http://ftp.se.debian.org/debian/ unstable/main libffi6 powerpc 3.0.13-4 [22.3 kB]
+Get:38 http://ftp.se.debian.org/debian/ unstable/main libglib2.0-0 powerpc 2.36.1-2build1 [1922 kB]
+Get:39 http://ftp.se.debian.org/debian/ unstable/main libcroco3 powerpc 0.6.6-2 [121 kB]
+Get:40 http://ftp.se.debian.org/debian/ unstable/main libdatrie1 powerpc 0.2.6-2 [28.8 kB]
+Get:41 http://ftp.se.debian.org/debian/ unstable/main libunistring0 powerpc 0.9.3-5 [421 kB]
+Get:42 http://ftp.se.debian.org/debian/ unstable/main libgettextpo0 powerpc 0.18.1.1-10 [138 kB]
+Get:43 http://ftp.se.debian.org/debian/ unstable/main gcc-4.8-base powerpc 4.8.0-7 [148 kB]
+Get:44 http://ftp.se.debian.org/debian/ unstable/main libgfortran3 powerpc 4.8.0-7 [278 kB]
+Get:45 http://ftp.se.debian.org/debian/ unstable/main x11-common all 1:7.7+3 [284 kB]
+Get:46 http://ftp.se.debian.org/debian/ unstable/main libice6 powerpc 2:1.0.8-2 [59.7 kB]
+Get:47 http://ftp.se.debian.org/debian/ unstable/main libjpeg8 powerpc 8d-1 [130 kB]
+Get:48 http://ftp.se.debian.org/debian/ unstable/main libmpfr4 powerpc 3.1.1-1 [553 kB]
+Get:49 http://ftp.se.debian.org/debian/ unstable/main libthai-data all 0.1.19-2 [156 kB]
+Get:50 http://ftp.se.debian.org/debian/ unstable/main libthai0 powerpc 0.1.19-2 [41.9 kB]
+Get:51 http://ftp.se.debian.org/debian/ unstable/main libxft2 powerpc 2.3.1-1 [60.6 kB]
+Get:52 http://ftp.se.debian.org/debian/ unstable/main fontconfig powerpc 2.9.0-7.1 [347 kB]
+Get:53 http://ftp.se.debian.org/debian/ unstable/main libpango1.0-0 powerpc 1.30.0-1 [451 kB]
+Get:54 http://ftp.se.debian.org/debian/ unstable/main libpaper1 powerpc 1.1.24+nmu2 [21.7 kB]
+Get:55 http://ftp.se.debian.org/debian/ unstable/main libpcrecpp0 powerpc 1:8.31-2 [129 kB]
+Get:56 http://ftp.se.debian.org/debian/ unstable/main libsm6 powerpc 2:1.2.1-2 [33.2 kB]
+Get:57 http://ftp.se.debian.org/debian/ unstable/main libjbig0 powerpc 2.0-2 [31.9 kB]
+Get:58 http://ftp.se.debian.org/debian/ unstable/main libtiff5 powerpc 4.0.2-6 [238 kB]
+Get:59 http://ftp.se.debian.org/debian/ unstable/main libxss1 powerpc 1:1.2.2-1 [17.3 kB]
+Get:60 http://ftp.se.debian.org/debian/ unstable/main libxt6 powerpc 1:1.1.3-1 [196 kB]
+Get:61 http://ftp.se.debian.org/debian/ unstable/main libmpc3 powerpc 1.0.1-1 [44.7 kB]
+Get:62 http://ftp.se.debian.org/debian/ unstable/main file powerpc 1:5.14-1 [54.1 kB]
+Get:63 http://ftp.se.debian.org/debian/ unstable/main gettext-base powerpc 0.18.1.1-10 [130 kB]
+Get:64 http://ftp.se.debian.org/debian/ unstable/main cdbs all 0.4.121 [80.5 kB]
+Get:65 http://ftp.se.debian.org/debian/ unstable/main libstdc++6-4.6-dev powerpc 4.6.4-2 [1699 kB]
+Get:66 http://incoming.debian.org/debian/ unstable/main r-base-dev all 3.0.1-1 [3896 B]
+Get:67 http://ftp.se.debian.org/debian/ unstable/main g++-4.6 powerpc 4.6.4-2 [6599 kB]
+Get:68 http://ftp.se.debian.org/debian/ unstable/main gcc-4.6 powerpc 4.6.4-2 [4885 kB]
+Get:69 http://ftp.se.debian.org/debian/ unstable/main cpp-4.6 powerpc 4.6.4-2 [4537 kB]
+Get:70 http://ftp.se.debian.org/debian/ unstable/main gcc-4.6-base powerpc 4.6.4-2 [143 kB]
+Get:71 http://ftp.se.debian.org/debian/ unstable/main html2text powerpc 1.3.2a-15 [105 kB]
+Get:72 http://ftp.se.debian.org/debian/ unstable/main libasprintf-dev powerpc 0.18.1.1-10 [26.9 kB]
+Get:73 http://ftp.se.debian.org/debian/ unstable/main libgettextpo-dev powerpc 0.18.1.1-10 [184 kB]
+Get:74 http://ftp.se.debian.org/debian/ unstable/main gettext powerpc 0.18.1.1-10 [1766 kB]
+Get:75 http://ftp.se.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:76 http://ftp.se.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:77 http://ftp.se.debian.org/debian/ unstable/main debhelper all 9.20130509 [707 kB]
+Get:78 http://ftp.se.debian.org/debian/ unstable/main gfortran-4.6 powerpc 4.6.4-2 [5190 kB]
+Get:79 http://ftp.se.debian.org/debian/ unstable/main gfortran powerpc 4:4.6.3-8 [1136 B]
+Get:80 http://ftp.se.debian.org/debian/ unstable/main libblas3 powerpc 1.2.20110419-5 [192 kB]
+Get:81 http://ftp.se.debian.org/debian/ unstable/main libblas-dev powerpc 1.2.20110419-5 [204 kB]
+Get:82 http://ftp.se.debian.org/debian/ unstable/main libbz2-dev powerpc 1.0.6-4 [35.5 kB]
+Get:83 http://ftp.se.debian.org/debian/ unstable/main libjpeg8-dev powerpc 8d-1 [236 kB]
+Get:84 http://ftp.se.debian.org/debian/ unstable/main liblapack3 powerpc 3.4.2+dfsg-1 [4105 kB]
+Get:85 http://ftp.se.debian.org/debian/ unstable/main liblapack-dev powerpc 3.4.2+dfsg-1 [4363 kB]
+Get:86 http://ftp.se.debian.org/debian/ unstable/main libtinfo-dev powerpc 5.9+20130504-1 [107 kB]
+Get:87 http://ftp.se.debian.org/debian/ unstable/main libncurses5-dev powerpc 5.9+20130504-1 [214 kB]
+Get:88 http://ftp.se.debian.org/debian/ unstable/main libpaper-utils powerpc 1.1.24+nmu2 [18.2 kB]
+Get:89 http://ftp.se.debian.org/debian/ unstable/main libpcre3-dev powerpc 1:8.31-2 [363 kB]
+Get:90 http://ftp.se.debian.org/debian/ unstable/main zlib1g-dev powerpc 1:1.2.8.dfsg-1 [214 kB]
+Get:91 http://ftp.se.debian.org/debian/ unstable/main libpng12-dev powerpc 1.2.49-4 [266 kB]
+Get:92 http://ftp.se.debian.org/debian/ unstable/main libreadline6-dev powerpc 6.2+dfsg-0.1 [187 kB]
+Get:93 http://ftp.se.debian.org/debian/ unstable/main libreadline-dev powerpc 6.2+dfsg-0.1 [900 B]
+Get:94 http://ftp.se.debian.org/debian/ unstable/main zip powerpc 3.0-7 [339 kB]
+Get:95 http://ftp.se.debian.org/debian/ unstable/main unzip powerpc 6.0-9 [191 kB]
+Get:96 http://ftp.se.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:97 http://ftp.se.debian.org/debian/ unstable/main tcl8.5 powerpc 8.5.11-2 [1634 kB]
+Get:98 http://ftp.se.debian.org/debian/ unstable/main tk8.5 powerpc 8.5.11-2 [1174 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 76.8 MB in 10s (7142 kB/s)
-(Reading database ... 10945 files and directories currently installed.)
-Preparing to replace ncurses-bin 5.9-4 (using .../ncurses-bin_5.9-6_powerpc.deb) ...
-Unpacking replacement ncurses-bin ...
-Setting up ncurses-bin (5.9-6) ...
-Selecting previously unselected package gcc-4.7-base:powerpc.
-(Reading database ... 10945 files and directories currently installed.)
-Unpacking gcc-4.7-base:powerpc (from .../gcc-4.7-base_4.7.0-3_powerpc.deb) ...
-Setting up gcc-4.7-base:powerpc (4.7.0-3) ...
-(Reading database ... 10957 files and directories currently installed.)
-Preparing to replace libgcc1:powerpc 1:4.6.3-1 (using .../libgcc1_1%3a4.7.0-3_powerpc.deb) ...
-Unpacking replacement libgcc1:powerpc ...
-Setting up libgcc1:powerpc (1:4.7.0-3) ...
-(Reading database ... 10957 files and directories currently installed.)
-Preparing to replace libstdc++6:powerpc 4.6.3-1 (using .../libstdc++6_4.7.0-3_powerpc.deb) ...
-Unpacking replacement libstdc++6:powerpc ...
-Setting up libstdc++6:powerpc (4.7.0-3) ...
-(Reading database ... 10957 files and directories currently installed.)
-Preparing to replace libtinfo5:powerpc 5.9-4 (using .../libtinfo5_5.9-6_powerpc.deb) ...
+Fetched 84.5 MB in 10s (8310 kB/s)
+(Reading database ... 10827 files and directories currently installed.)
+Preparing to replace libc6-dev:powerpc 2.13-37 (using .../libc6-dev_2.17-2_powerpc.deb) ...
+Unpacking replacement libc6-dev:powerpc ...
+Preparing to replace libc-dev-bin 2.13-37 (using .../libc-dev-bin_2.17-2_powerpc.deb) ...
+Unpacking replacement libc-dev-bin ...
+Preparing to replace libc6:powerpc 2.13-37 (using .../libc6_2.17-2_powerpc.deb) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Unpacking replacement libc6:powerpc ...
+Setting up libc6:powerpc (2.17-2) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Nothing to restart.
+(Reading database ... 10852 files and directories currently installed.)
+Preparing to replace libtinfo5:powerpc 5.9-10 (using .../libtinfo5_5.9+20130504-1_powerpc.deb) ...
Unpacking replacement libtinfo5:powerpc ...
-Setting up libtinfo5:powerpc (5.9-6) ...
-(Reading database ... 10957 files and directories currently installed.)
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+Setting up libtinfo5:powerpc (5.9+20130504-1) ...
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Unpacking replacement libncurses5:powerpc ...
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+Preparing to replace ncurses-bin 5.9-10 (using .../ncurses-bin_5.9+20130504-1_powerpc.deb) ...
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+Setting up ncurses-bin (5.9+20130504-1) ...
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+Setting up libreadline6:powerpc (6.2+dfsg-0.1) ...
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+Setting up zlib1g:powerpc (1:1.2.8.dfsg-1) ...
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+Selecting previously unselected package gcc-4.8-base:powerpc.
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+Selecting previously unselected package libtiff5:powerpc.
+Unpacking libtiff5:powerpc (from .../libtiff5_4.0.2-6_powerpc.deb) ...
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+Unpacking libxt6:powerpc (from .../libxt6_1%3a1.1.3-1_powerpc.deb) ...
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+Unpacking libmpc3:powerpc (from .../libmpc3_1.0.1-1_powerpc.deb) ...
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+Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_powerpc.deb) ...
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+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
+Preparing to replace libstdc++6-4.6-dev 4.6.3-14 (using .../libstdc++6-4.6-dev_4.6.4-2_powerpc.deb) ...
Unpacking replacement libstdc++6-4.6-dev ...
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+Preparing to replace g++-4.6 4.6.3-14 (using .../g++-4.6_4.6.4-2_powerpc.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.3-14 (using .../gcc-4.6_4.6.4-2_powerpc.deb) ...
Unpacking replacement gcc-4.6 ...
-Preparing to replace cpp-4.6 4.6.3-1 (using .../cpp-4.6_4.6.3-3_powerpc.deb) ...
+Preparing to replace cpp-4.6 4.6.3-14 (using .../cpp-4.6_4.6.4-2_powerpc.deb) ...
Unpacking replacement cpp-4.6 ...
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+Preparing to replace gcc-4.6-base:powerpc 4.6.3-14 (using .../gcc-4.6-base_4.6.4-2_powerpc.deb) ...
Unpacking replacement gcc-4.6-base:powerpc ...
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Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_powerpc.deb) ...
+Selecting previously unselected package libasprintf-dev:powerpc.
+Unpacking libasprintf-dev:powerpc (from .../libasprintf-dev_0.18.1.1-10_powerpc.deb) ...
+Selecting previously unselected package libgettextpo-dev:powerpc.
+Unpacking libgettextpo-dev:powerpc (from .../libgettextpo-dev_0.18.1.1-10_powerpc.deb) ...
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-Preparing to replace gcc 4:4.6.2-4 (using .../gcc_4%3a4.6.3-4_powerpc.deb) ...
-Removing old gcc doc directory.
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+Unpacking debhelper (from .../debhelper_9.20130509_all.deb) ...
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+Unpacking gfortran (from .../gfortran_4%3a4.6.3-8_powerpc.deb) ...
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+Unpacking libblas3 (from .../libblas3_1.2.20110419-5_powerpc.deb) ...
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Unpacking libjpeg8-dev:powerpc (from .../libjpeg8-dev_8d-1_powerpc.deb) ...
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+Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_powerpc.deb) ...
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+Unpacking libtinfo-dev:powerpc (from .../libtinfo-dev_5.9+20130504-1_powerpc.deb) ...
+Selecting previously unselected package libncurses5-dev:powerpc.
+Unpacking libncurses5-dev:powerpc (from .../libncurses5-dev_5.9+20130504-1_powerpc.deb) ...
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+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_powerpc.deb) ...
+Selecting previously unselected package libpcre3-dev:powerpc.
+Unpacking libpcre3-dev:powerpc (from .../libpcre3-dev_1%3a8.31-2_powerpc.deb) ...
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+Unpacking zlib1g-dev:powerpc (from .../zlib1g-dev_1%3a1.2.8.dfsg-1_powerpc.deb) ...
Selecting previously unselected package libpng12-dev.
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+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_powerpc.deb) ...
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+Unpacking libreadline6-dev:powerpc (from .../libreadline6-dev_6.2+dfsg-0.1_powerpc.deb) ...
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+Unpacking libreadline-dev:powerpc (from .../libreadline-dev_6.2+dfsg-0.1_powerpc.deb) ...
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+Unpacking zip (from .../archives/zip_3.0-7_powerpc.deb) ...
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+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
Selecting previously unselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_powerpc.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_powerpc.deb) ...
Selecting previously unselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.11-1_powerpc.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_powerpc.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.15.0-1_powerpc.deb) ...
+Unpacking r-base-core (from .../r-base-core_3.0.1-1_powerpc.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.15.0-1_all.deb) ...
-Setting up libpipeline1:powerpc (1.2.1-1) ...
-Setting up libmagic1:powerpc (5.11-1) ...
-Setting up libpcre3:powerpc (1:8.30-4) ...
-Setting up libexpat1:powerpc (2.1.0-1) ...
-Setting up libfreetype6:powerpc (2.4.9-1) ...
-Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3.1) ...
-Setting up libfontconfig1:powerpc (2.8.0-3.1) ...
-Setting up libpixman-1-0:powerpc (0.24.4-1) ...
-Setting up libpng12-0:powerpc (1.2.49-1) ...
+Unpacking r-base-dev (from .../r-base-dev_3.0.1-1_all.deb) ...
+Setting up libc-dev-bin (2.17-2) ...
+Setting up libc6-dev:powerpc (2.17-2) ...
+Setting up libpipeline1:powerpc (1.2.3-1) ...
+Setting up groff-base (1.22.2-2) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.3-6) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:powerpc (0.18.1.1-10) ...
+Setting up libmagic1:powerpc (1:5.14-1) ...
+Setting up libpcre3:powerpc (1:8.31-2) ...
+Setting up libxml2:powerpc (2.8.0+dfsg1-7+nmu1) ...
+Setting up libexpat1:powerpc (2.1.0-3) ...
+Setting up libfreetype6:powerpc (2.4.9-1.1) ...
+Setting up ucf (3.0025+nmu3) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:powerpc (2.9.0-7.1) ...
+Setting up libpixman-1-0:powerpc (0.26.0-4) ...
+Setting up libpng12-0:powerpc (1.2.49-4) ...
Setting up libxau6:powerpc (1:1.0.7-1) ...
-Setting up libxdmcp6:powerpc (1:1.1.0-4) ...
-Setting up libxcb1:powerpc (1.8.1-1) ...
-Setting up libx11-data (2:1.4.4-4) ...
-Setting up libx11-6:powerpc (2:1.4.4-4) ...
-Setting up libxcb-render0:powerpc (1.8.1-1) ...
-Setting up libxcb-shm0:powerpc (1.8.1-1) ...
-Setting up libxrender1:powerpc (1:0.9.6-2) ...
-Setting up libcairo2:powerpc (1.12.0-2) ...
-Setting up libffi5:powerpc (3.0.10-3) ...
-Setting up libglib2.0-0:powerpc (2.32.0-4) ...
+Setting up libxdmcp6:powerpc (1:1.1.1-1) ...
+Setting up libxcb1:powerpc (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:powerpc (2:1.5.0-1) ...
+Setting up libxcb-render0:powerpc (1.8.1-2) ...
+Setting up libxcb-shm0:powerpc (1.8.1-2) ...
+Setting up libxext6:powerpc (2:1.3.1-2) ...
+Setting up libxrender1:powerpc (1:0.9.7-1) ...
+Setting up libcairo2:powerpc (1.12.14-4) ...
+Setting up libffi6:powerpc (3.0.13-4) ...
+Setting up libglib2.0-0:powerpc (2.36.1-2build1) ...
No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-7) ...
-Setting up libcroco3:powerpc (0.6.5-1) ...
-Setting up libdatrie1:powerpc (0.2.5-3) ...
-Setting up libgfortran3:powerpc (4.7.0-3) ...
-Setting up libgomp1:powerpc (4.7.0-3) ...
-Setting up x11-common (1:7.6+12) ...
+Setting up libcroco3:powerpc (0.6.6-2) ...
+Setting up libdatrie1:powerpc (0.2.6-2) ...
+Setting up libunistring0:powerpc (0.9.3-5) ...
+Setting up libgettextpo0:powerpc (0.18.1.1-10) ...
+Setting up gcc-4.8-base:powerpc (4.8.0-7) ...
+Setting up libgfortran3:powerpc (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6:powerpc (2:1.0.7-2) ...
+Setting up libice6:powerpc (2:1.0.8-2) ...
Setting up libjpeg8:powerpc (8d-1) ...
-Setting up libthai-data (0.1.17-1) ...
-Setting up libthai0:powerpc (0.1.17-1) ...
-Setting up libxft2:powerpc (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3.1) ...
-Cleaning up old fontconfig caches... done.
+Setting up libmpfr4:powerpc (3.1.1-1) ...
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:powerpc (0.1.19-2) ...
+Setting up libxft2:powerpc (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
Regenerating fonts cache... done.
Setting up libpango1.0-0:powerpc (1.30.0-1) ...
-Setting up libpcrecpp0:powerpc (1:8.30-4) ...
+Setting up libpaper1:powerpc (1.1.24+nmu2) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpcrecpp0:powerpc (1:8.31-2) ...
Setting up libsm6:powerpc (2:1.2.1-2) ...
-Setting up libtiff4:powerpc (3.9.6-2) ...
-Setting up libunistring0:powerpc (0.9.3-5) ...
-Setting up libxext6:powerpc (2:1.3.0-3) ...
-Setting up libxss1:powerpc (1:1.2.1-2) ...
-Setting up libxt6:powerpc (1:1.1.1-2) ...
-Setting up bsdmainutils (9.0.1) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
-Building database of manual pages ...
-Setting up gcc-4.6-base:powerpc (4.6.3-3) ...
-Setting up cpp-4.6 (4.6.3-3) ...
-Setting up gcc-4.6 (4.6.3-3) ...
-Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.109) ...
-Setting up cpp (4:4.6.3-4) ...
+Setting up libjbig0:powerpc (2.0-2) ...
+Setting up libtiff5:powerpc (4.0.2-6) ...
+Setting up libxss1:powerpc (1:1.2.2-1) ...
+Setting up libxt6:powerpc (1:1.1.3-1) ...
+Setting up libmpc3:powerpc (1.0.1-1) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
+Setting up gcc-4.6-base:powerpc (4.6.4-2) ...
+Setting up cpp-4.6 (4.6.4-2) ...
+Setting up gcc-4.6 (4.6.4-2) ...
Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-5) ...
+Setting up libasprintf-dev:powerpc (0.18.1.1-10) ...
+Setting up libgettextpo-dev:powerpc (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120410) ...
-Setting up dpatch (2.0.35) ...
-Setting up gcc (4:4.6.3-4) ...
-Setting up gfortran-4.6 (4.6.3-3) ...
-Setting up gfortran (4:4.6.3-4) ...
-update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev:powerpc (1.0.6-1) ...
+Setting up debhelper (9.20130509) ...
+Setting up gfortran-4.6 (4.6.4-2) ...
+Setting up gfortran (4:4.6.3-8) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:powerpc (1.0.6-4) ...
Setting up libjpeg8-dev:powerpc (8d-1) ...
-Setting up liblapack3gf (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev:powerpc (5.9-6) ...
-Setting up libncurses5-dev (5.9-6) ...
-Setting up libpaper1 (1.1.24+nmu1) ...
-
-Creating config file /etc/papersize with new version
-Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcre3-dev (1:8.30-4) ...
-Setting up zlib1g-dev:powerpc (1:1.2.6.dfsg-2) ...
-Setting up libpng12-dev (1.2.49-1) ...
-Setting up libreadline6-dev:powerpc (6.2-8) ...
-Setting up libreadline-dev:powerpc (6.2-8) ...
-Setting up zip (3.0-4) ...
-Setting up unzip (6.0-6) ...
-Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
-Setting up tcl8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.15.0-1) ...
-Setting R_PAPERSIZE_USER default to 'a4'
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:powerpc (5.9+20130504-1) ...
+Setting up libncurses5-dev:powerpc (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:powerpc (1:8.31-2) ...
+Setting up zlib1g-dev:powerpc (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:powerpc (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:powerpc (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.1-1) ...
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.15.0-1) ...
-Setting up g++-4.6 (4.6.3-3) ...
-Setting up libstdc++6-4.6-dev (4.6.3-3) ...
+Setting up r-base-dev (3.0.1-1) ...
+Setting up g++-4.6 (4.6.4-2) ...
+Setting up libstdc++6-4.6-dev (4.6.4-2) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 18 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 55 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-powerpc64 powerpc (ppc64)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-3 gcc-4.6_4.6.3-3 libc6-dev_2.13-27 libstdc++6_4.7.0-3 libstdc++6-4.6-dev_4.6.3-3 linux-libc-dev_3.2.12-1
-Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.109 coreutils_8.13-3.1 cpp_4:4.6.3-4 cpp-4.6_4.6.3-3 dash_0.5.7-3 debconf_1.5.42 debconf-i18n_1.5.42 debfoster_2.7-1.1 debhelper_9.20120410 debian-archive-keyring_2010.08.28 debianutils_4.2.1 diffutils_1:3.2-2 dpatch_2.0.35 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.1-2 e2fsprogs_1.42.1-2 fakeroot_1.18.2-1 file_5.11-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.2-4 g++-4.6_4.6.3-3 gcc_4:4.6.3-4 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-3 gcc-4.6-base_4.6.3-3 gcc-4.7-base_4.7.0-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.3-4 gfortran-4.6_4.6.3-3 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.10-1 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-27 libc-dev-bin_2.13-27 libc6_2.13-27 libc6-dev_2.13-27 libcairo2_1.12.0-2 libclass-isa-perl_0.36-3 libcomerr2_1.42.1-2 libcroco3_0.6.5-1 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libexpat1_2.1.0-1 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-1+b1 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-3 libgdbm3_1.8.3-10 libgfortran3_4.7.0-3 libglib2.0-0_2.32.0-4 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-3 libice6_2:1.0.7-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7+b1 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-6 libncurses5-dev_5.9-6 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_1:8.30-4 libpcre3-dev_1:8.30-4 libpcrecpp0_1:8.30-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.49-1 libpng12-dev_1.2.49-1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-2 libslang2_2.2.4-7 libsm6_2:1.2.1-2 libss2_1.42.1-2 libstdc++6_4.7.0-3 libstdc++6-4.6-dev_4.6.3-3 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-6 libtinfo5_5.9-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.2.12-1 login_1:4.1.5-1 lsb-base_3.2+Debian31 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-16 mount_2.20.1-4 multiarch-support_2.13-27 ncurses-base_5.9-4 ncurses-bin_5.9-6 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 r-base-core_2.15.0-1 r-base-dev_2.15.0-1 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2012b-1 ucf_3.0025+nmu2 unzip_6.0-6 util-linux_2.20.1-4 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
+Toolchain package versions: binutils_2.22-7.1 dpkg-dev_1.16.9 g++-4.6_4.6.4-2 gcc-4.6_4.6.4-2 libc6-dev_2.17-2 libstdc++6_4.7.2-4 libstdc++6-4.6-dev_4.6.4-2 linux-libc-dev_3.2.35-2
+Package versions: apt_0.9.7.7 base-files_7.1 base-passwd_3.5.26 bash_4.2-5.1 binutils_2.22-7.1 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.3 build-essential_11.5 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.13-3.2 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2 dash_0.5.7-3 debconf_1.5.48 debfoster_2.7-1.2 debhelper_9.20130509 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-7 dpkg_1.16.9 dpkg-dev_1.16.9 e2fslibs_1.42.5-1 e2fsprogs_1.42.5-1 fakeroot_1.18.4-2 file_1:5.14-1 findutils_4.4.2-5 fontconfig_2.9.0-7.1 fontconfig-config_2.9.0-7.1 fonts-dejavu-core_2.33+svn2514-3 g++_4:4.6.3-8 g++-4.6_4.6.4-2 gcc_4:4.6.3-8 gcc-4.4-base_4.4.7-3 gcc-4.5-base_4.5.4-1 gcc-4.6_4.6.4-2 gcc-4.6-base_4.6.4-2 gcc-4.7-base_4.7.2-4 gcc-4.8-base_4.8.0-7 gettext_0.18.1.1-10 gettext-base_0.18.1.1-10 gfortran_4:4.6.3-8 gfortran-4.6_4.6.4-2 gnupg_1.4.12-6 gpgv_1.4.12-6 grep_2.14-1 groff-base_1.22.2-2 gzip_1.5-1.1 hostname_3.12 html2text_1.3.2a-15 initscripts_2.88dsf-35 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7.7 libasprintf-dev_0.18.1.1-10 libasprintf0c2_0.18.1.1-10 libattr1_1:2.4.46-8 libblas-dev_1.2.20110419-5 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.3 libbz2-1.0_1.0.6-4 libbz2-dev_1.0.6-4 libc-bin_2.13-37 libc-dev-bin_2.17-2 libc6_2.17-2 libc6-dev_2.17-2 libcairo2_1.12.14-4 libclass-isa-perl_0.36-5 libcomerr2_1.42.5-1 libcroco3_0.6.6-2 libdatrie1_0.2.6-2 libdb5.1_5.1.29-5 libdpkg-perl_1.16.9 libexpat1_2.1.0-3 libffi6_3.0.13-4 libfile-fcntllock-perl_0.14-2 libfontconfig1_2.9.0-7.1 libfreetype6_2.4.9-1.1 libgc1c2_1:7.1-9 libgcc1_1:4.7.2-4 libgdbm3_1.8.3-11 libgettextpo-dev_0.18.1.1-10 libgettextpo0_0.18.1.1-10 libgfortran3_4.8.0-7 libglib2.0-0_2.36.1-2build1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.2-4 libice6_2:1.0.8-2 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.4.2+dfsg-1 liblapack3_3.4.2+dfsg-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-1 libmount1_2.20.1-5.3 libmpc2_0.9-4 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libncurses5_5.9+20130504-1 libncurses5-dev_5.9+20130504-1 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.31-2 libpcre3-dev_1:8.31-2 libpcrecpp0_1:8.31-2 libpipeline1_1.2.3-1 libpixman-1-0_0.26.0-4 libpng12-0_1.2.49-4 libpng12-dev_1.2.49-4 libreadline-dev_6.2+dfsg-0.1 libreadline6_6.2+dfsg-0.1 libreadline6-dev_6.2+dfsg-0.1 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libss2_1.42.5-1 libstdc++6_4.7.2-4 libstdc++6-4.6-dev_4.6.4-2 libswitch-perl_2.16-2 libthai-data_0.1.19-2 libthai0_0.1.19-2 libtiff5_4.0.2-6 libtimedate-perl_1.2000-1 libtinfo-dev_5.9+20130504-1 libtinfo5_5.9+20130504-1 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23+nmu1 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.3 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-2 libxcb-shm0_1.8.1-2 libxcb1_1.8.1-2 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-7+nmu1 libxrender1_1:0.9.7-1 libxss1_1:1.2.2-1 libxt6_1:1.1.3-1 linux-libc-dev_3.2.35-2 login_1:4.1.5.1-1 lsb-base_4.1+Debian9 make_3.81-8.2 man-db_2.6.3-6 mawk_1.3.3-17 mount_2.20.1-5.3 multiarch-support_2.13-37 ncurses-base_5.9-10 ncurses-bin_5.9+20130504-1 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-16 perl-base_5.14.2-16 perl-modules_5.14.2-16 po-debconf_1.0.16+nmu2 r-base-core_3.0.1-1 r-base-dev_3.0.1-1 readline-common_6.2-9 sed_4.2.1-10 sensible-utils_0.0.7 sudo_1.8.5p2-1 sysv-rc_2.88dsf-35 sysvinit_2.88dsf-35 sysvinit-utils_2.88dsf-35 tar_1.26-4 tcl8.5_8.5.11-2 tk8.5_8.5.11-2 ttf-dejavu-core_2.33+svn2514-3 tzdata_2012j-1 ucf_3.0025+nmu3 unzip_6.0-9 util-linux_2.20.1-5.3 x11-common_1:7.7+3 xdg-utils_1.1.0~rc1+git20111210-7 xz-utils_5.1.1alpha+20120614-2 zip_3.0-7 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -622,12 +652,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Apr 12 02:45:32 2012 UTC using RSA key ID 2295D502
+gpgv: Signature made Thu May 16 14:46:42 2013 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.12.0~dfsg-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.12.0~dfsg
-dpkg-source: info: unpacking r-bioc-limma_3.12.0~dfsg.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.12.0~dfsg-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.16.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.16.3~dfsg
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg-1.debian.tar.gz
Check disc space
────────────────
@@ -637,27 +667,12 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.12.0~dfsg-1
- dpkg-source --before-build r-bioc-limma-3.12.0~dfsg
+dpkg-buildpackage: source version 3.16.3~dfsg-1
+ dpkg-source --before-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: host architecture powerpc
fakeroot debian/rules clean
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
-/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-powerpc-RURGuK/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-powerpc-RURGuK/r-bioc-limma-3.12.0~dfsg'
-if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "reverse-patches" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-for dir in debian/patches ; do \
- rm -f $dir/*.log ; \
- done
dh_clean
rm -f debian/r-bioc-limma.substvars
rm -f debian/r-bioc-limma.*.debhelper
@@ -678,26 +693,9 @@ if test -d src; then \
fi
rm -f config.log config.status
debian/rules build-arch
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
-/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-powerpc-RURGuK/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-powerpc-RURGuK/r-bioc-limma-3.12.0~dfsg'
-if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-powerpc-RURGuK/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-powerpc-RURGuK/r-bioc-limma-3.12.0~dfsg'
fakeroot debian/rules binary-arch
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
@@ -709,26 +707,26 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
install -d debian/r-bioc-limma/usr/lib/R/site-library
-echo "R:Depends=r-base-core (>= 2.15.0-1)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 3.0.1-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-powerpc-RURGuK/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-powerpc-rUwN9C/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-powerpc-RURGuK/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-powerpc-rUwN9C/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-powerpc-RURGuK/r-bioc-limma-3.12.0~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-powerpc-rUwN9C/r-bioc-limma-3.16.3~dfsg/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-powerpc-RURGuK/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-powerpc-RURGuK/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-powerpc-RURGuK/r-bioc-limma-3.12.0~dfsg/src'
-installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-powerpc-RURGuK/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-powerpc-rUwN9C/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-powerpc-rUwN9C/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-powerpc-rUwN9C/r-bioc-limma-3.16.3~dfsg/src'
+installing to /build/buildd-r-bioc-limma_3.16.3~dfsg-1-powerpc-rUwN9C/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -736,22 +734,27 @@ installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-powerpc-RURGuK/r-bioc-lim
*** installing help indices
** building package indices
** installing vignettes
- 'limma.Rnw'
** testing if installed package can be loaded
-
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.12.0~dfsg-1-powerpc-RURGuK/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-powerpc-RURGuK/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-powerpc-RURGuK/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.16.3~dfsg-1-powerpc-rUwN9C/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-powerpc-rUwN9C/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-powerpc-rUwN9C/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.12.0~dfsg-1-powerpc-RURGuK/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.16.3~dfsg-1-powerpc-rUwN9C/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-powerpc-RURGuK/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-powerpc-rUwN9C/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/CITATION
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/doc/*
dh_installdocs -pr-bioc-limma
install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-limma_3.16.3~dfsg-1-powerpc-rUwN9C/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/doc/r-bioc-limma \;
+ cp -a debian/README.test debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ chown -R 0:0 debian/r-bioc-limma/usr/share/doc
+ chmod -R go=rX debian/r-bioc-limma/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-limma/usr/share/doc
install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
@@ -783,9 +786,9 @@ dh_strip -pr-bioc-limma
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
cd debian/r-bioc-limma
- chmod a-x usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/changelog.Debian
- gzip -9nf usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/changelog.Debian
- cd '/build/buildd-r-bioc-limma_3.12.0~dfsg-1-powerpc-RURGuK/r-bioc-limma-3.12.0~dfsg'
+ chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save
+ gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save
+ cd '/build/buildd-r-bioc-limma_3.16.3~dfsg-1-powerpc-rUwN9C/r-bioc-limma-3.16.3~dfsg'
dh_fixperms -pr-bioc-limma
find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -815,62 +818,79 @@ dh_md5sums -pr-bioc-limma
chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
dpkg-deb --build debian/r-bioc-limma ..
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.12.0~dfsg-1_powerpc.deb'.
- dpkg-genchanges -B -mpowerpc Build Daemon (parry) <buildd_powerpc-parry at buildd.debian.org> >../r-bioc-limma_3.12.0~dfsg-1_powerpc.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.16.3~dfsg-1_powerpc.deb'.
+ dpkg-genchanges -B -mpowerpc Build Daemon (praetorius) <buildd_powerpc-praetorius at buildd.debian.org> >../r-bioc-limma_3.16.3~dfsg-1_powerpc.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.12.0~dfsg
+ dpkg-source --after-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120412-0335
+Build finished at 20130516-1540
-r-bioc-limma_3.12.0~dfsg-1_powerpc.changes:
+r-bioc-limma_3.16.3~dfsg-1_powerpc.changes:
Format: 1.8
-Date: Thu, 12 Apr 2012 11:40:40 +0900
+Date: Thu, 16 May 2013 15:16:13 +0200
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: powerpc
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
Distribution: sid
Urgency: low
-Maintainer: powerpc Build Daemon (parry) <buildd_powerpc-parry at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Maintainer: powerpc Build Daemon (praetorius) <buildd_powerpc-praetorius at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.12.0~dfsg-1) unstable; urgency=low
+ r-bioc-limma (3.16.3~dfsg-1) unstable; urgency=low
.
[ Charles Plessy ]
- 2d3420e Imported Upstream version 3.12.0~dfsg
- 4bbb8e4 Document LIMMA's copyright as a whole.
+ ff8c6db Imported Upstream version 3.12.1~dfsg
+ b4f097e Effective license is GPL-2, without the '+', as R is GPL-2.
.
[ Andreas Tille ]
- 8a61a4c Obtain references from inst/CITATION
+ * Imported new upstream version 3.16.3~dfsg
+ * debian/control
+ - added myself to Uploaders
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - Fake normalisation as it is done by `cme fix dpkg-control`
+ (the command did actually no change - the control file was
+ brought into shape manually)
+ - Removed versioned dependency of r-base-dev
+ * debian/copyright:
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - checked new upstream version and bumped version number
+ - Add years to Copyright fields
+ * debian/rules: Remove executable flag from doc files
+ * debian/source/format: Add explicit source format specification
Checksums-Sha1:
- 58c09bb61449f5b4b4ce32db0129cf9e2be830fa 808668 r-bioc-limma_3.12.0~dfsg-1_powerpc.deb
+ bdbde945a715490a1530b174014b4d50e1306475 1618464 r-bioc-limma_3.16.3~dfsg-1_powerpc.deb
Checksums-Sha256:
- 31140a344b9f0747ff4e777fbb0985b83c83e573305e916ec232670e7010fe42 808668 r-bioc-limma_3.12.0~dfsg-1_powerpc.deb
+ b4bfe463c59d8e12e9129dc61189a1508e32118925bce9dd94066fc9699bf982 1618464 r-bioc-limma_3.16.3~dfsg-1_powerpc.deb
Files:
- 99a3d7a373691e2dbf45ec4ef1b47ea3 808668 gnu-r optional r-bioc-limma_3.12.0~dfsg-1_powerpc.deb
+ d157c01a405c4c1219da6f25859d78ae 1618464 gnu-r optional r-bioc-limma_3.16.3~dfsg-1_powerpc.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.12.0~dfsg-1_powerpc.deb
+r-bioc-limma_3.16.3~dfsg-1_powerpc.deb
──────────────────────────────────────
new debian package, version 2.0.
- size 808668 bytes: control archive= 1545 bytes.
+ size 1618464 bytes: control archive= 1674 bytes.
777 bytes, 16 lines control
- 2290 bytes, 30 lines md5sums
+ 2621 bytes, 34 lines md5sums
Package: r-bioc-limma
- Version: 3.12.0~dfsg-1
+ Version: 3.16.3~dfsg-1
Architecture: powerpc
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 983
- Depends: libc6 (>= 2.1.3), r-base-core (>= 2.15.0-1)
+ Installed-Size: 1846
+ Depends: libc6 (>= 2.1.3), r-base-core (>= 3.0.1-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -882,51 +902,56 @@ r-bioc-limma_3.12.0~dfsg-1_powerpc.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2012-04-12 03:35 ./
-drwxr-xr-x root/root 0 2012-04-12 03:35 ./usr/
-drwxr-xr-x root/root 0 2012-04-12 03:35 ./usr/share/
-drwxr-xr-x root/root 0 2012-04-12 03:35 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-04-12 03:35 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 683 2012-04-12 03:35 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 2457 2012-04-12 03:35 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 27996 2012-03-30 22:32 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 264 2012-04-12 03:35 ./usr/share/doc/r-bioc-limma/README.Debian
-drwxr-xr-x root/root 0 2012-04-12 03:35 ./usr/lib/
-drwxr-xr-x root/root 0 2012-04-12 03:35 ./usr/lib/R/
-drwxr-xr-x root/root 0 2012-04-12 03:35 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2012-04-12 03:35 ./usr/lib/R/site-library/limma/
-drwxr-xr-x root/root 0 2012-04-12 03:35 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 8456 2012-04-12 03:35 ./usr/lib/R/site-library/limma/libs/limma.so
--rw-r--r-- root/root 9754 2012-04-12 03:35 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2012-04-12 03:35 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 1179 2012-04-12 03:35 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 35015 2012-04-12 03:35 ./usr/lib/R/site-library/limma/html/00Index.html
-drwxr-xr-x root/root 0 2012-04-12 03:35 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 202049 2012-04-12 03:35 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 383 2012-04-12 03:35 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 3827 2012-04-12 03:35 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2012-04-12 03:35 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1375 2012-04-12 03:35 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 6317 2012-04-12 03:35 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 473118 2012-04-12 03:35 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3329 2012-04-12 03:35 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 2431 2012-04-12 03:35 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 3989 2012-04-12 03:35 ./usr/lib/R/site-library/limma/NEWS.Rd
-drwxr-xr-x root/root 0 2012-04-12 03:35 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 5727 2012-04-12 03:35 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 220 2012-04-12 03:35 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 6157 2012-04-12 03:35 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 1055 2012-04-12 03:35 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 521 2012-04-12 03:35 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 2943 2012-04-12 03:35 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 972 2012-04-12 03:35 ./usr/lib/R/site-library/limma/DESCRIPTION
--rwxr-xr-x root/root 1230 2012-04-12 03:35 ./usr/lib/R/site-library/limma/CITATION
--rw-r--r-- root/root 1901 2012-04-12 03:35 ./usr/lib/R/site-library/limma/NAMESPACE
-drwxr-xr-x root/root 0 2012-04-12 03:35 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 91993 2012-04-12 03:35 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 673 2012-04-12 03:35 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 1711 2012-04-12 03:35 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 42743 2012-04-12 03:35 ./usr/lib/R/site-library/limma/doc/limma.pdf
+drwxr-xr-x root/root 0 2013-05-16 15:40 ./
+drwxr-xr-x root/root 0 2013-05-16 15:40 ./usr/
+drwxr-xr-x root/root 0 2013-05-16 15:39 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-16 15:39 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-16 15:40 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-16 15:39 ./usr/lib/R/site-library/limma/
+drwxr-xr-x root/root 0 2013-05-16 15:40 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8444 2013-05-16 15:40 ./usr/lib/R/site-library/limma/libs/limma.so
+-rw-r--r-- root/root 963 2013-05-16 15:39 ./usr/lib/R/site-library/limma/CITATION
+-rw-r--r-- root/root 11214 2013-05-16 15:39 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2013-05-16 15:39 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 6375 2013-05-16 15:39 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 219 2013-05-16 15:39 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 1073 2013-05-16 15:39 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 5944 2013-05-16 15:39 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 3089 2013-05-16 15:39 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 541 2013-05-16 15:39 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 10085 2013-05-16 15:39 ./usr/lib/R/site-library/limma/INDEX
+-rw-r--r-- root/root 2046 2013-05-16 15:39 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2013-05-16 15:39 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 2567 2013-05-16 15:39 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 3417 2013-05-16 15:39 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 1408 2013-05-16 15:39 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 6703 2013-05-16 15:39 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 495137 2013-05-16 15:39 ./usr/lib/R/site-library/limma/help/limma.rdb
+drwxr-xr-x root/root 0 2013-05-16 15:39 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 37337 2013-05-16 15:39 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2013-05-16 15:39 ./usr/lib/R/site-library/limma/html/R.css
+drwxr-xr-x root/root 0 2013-05-16 15:39 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 1711 2013-05-16 15:39 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 102936 2013-05-16 15:39 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 806089 2013-05-16 15:39 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 45597 2013-05-16 15:39 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 673 2013-05-16 15:39 ./usr/lib/R/site-library/limma/doc/index.html
+drwxr-xr-x root/root 0 2013-05-16 15:39 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 1056 2013-05-16 15:39 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 4103 2013-05-16 15:39 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 206556 2013-05-16 15:39 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 993 2013-05-16 15:39 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2013-05-16 15:40 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-16 15:40 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-16 15:40 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 264 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 1153 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 2605 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 437 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.test
+drwxr-xr-x root/root 0 2013-05-16 15:40 ./usr/share/doc/r-bioc-limma/tests/
+-rw-r--r-- root/root 2097 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.R.gz
+-rw-r--r-- root/root 14649 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save.gz
+-rw-r--r-- root/root 31097 2013-05-02 00:02 ./usr/share/doc/r-bioc-limma/changelog.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -940,7 +965,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-powerpc-sbuild-500c82fc-2ed8-4e1a-929c-206cd8a10dab/build/buildd-r-bioc-limma_3.12.0~dfsg-1-powerpc-RURGuK
+Purging /var/lib/schroot/mount/sid-powerpc-sbuild-b95decec-5ca4-4026-936e-72d0c9b45524/build/buildd-r-bioc-limma_3.16.3~dfsg-1-powerpc-rUwN9C
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -948,19 +973,19 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: powerpc
-Build-Space: 3248
-Build-Time: 16
+Build-Space: 5888
+Build-Time: 23
Distribution: sid
-Install-Time: 205
-Job: r-bioc-limma_3.12.0~dfsg-1
+Install-Time: 188
+Job: r-bioc-limma_3.16.3~dfsg-1
Package: r-bioc-limma
-Package-Time: 249
-Source-Version: 3.12.0~dfsg-1
-Space: 3248
+Package-Time: 252
+Source-Version: 3.16.3~dfsg-1
+Space: 5888
Status: successful
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120412-0335
-Build needed 00:04:09, 3248k disc space
-Signature with key '9811BFE6' requested:
+Finished at 20130516-1540
+Build needed 00:04:12, 5888k disc space
+Signature with key '0E6E7223' requested:
diff --git a/s390.log b/s390.log
index 1c31a99..a5c864f 100644
--- a/s390.log
+++ b/s390.log
@@ -1,72 +1,65 @@
-From buildd at zandonai.debian.org Thu Apr 12 03:32:53 2012
-Return-path: <buildd at zandonai.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+From buildd at zappa.debian.org Fri May 17 14:12:53 2013
+Return-path: <buildd at zappa.debian.org>
+Received: from mailly.debian.org ([82.195.75.114])
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- by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
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+ (Exim 4.72) (envelope-from <buildd at zappa.debian.org>)
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+ CN=zappa.debian.org, EMAIL=hostmaster at zappa.debian.org (verified)
+ by mailly.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:256)
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MIME-Version: 1.0
Content-Transfer-Encoding: binary
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-Date: Thu, 12 Apr 2012 03:32:52 +0000
-From: buildd on zandonai <buildd at zandonai.debian.org>
+Date: Fri, 17 May 2013 14:12:50 +0000
+From: buildd on zappa <buildd at zappa.debian.org>
To: phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.12.0~dfsg-1 on s390
+Subject: Log for successful build of r-bioc-limma_3.16.3~dfsg-1 on s390
(dist=sid)
-Key-Id: E7C67939
+Key-Id: 09D4EA98
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zandonai.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zappa.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.12.0~dfsg-1 (s390) 12 Apr 2012 03:31 ║
+║ r-bioc-limma 3.16.3~dfsg-1 (s390) 17 May 2013 14:09 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.12.0~dfsg-1
-Source Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
+Source Version: 3.16.3~dfsg-1
Architecture: s390
-Get:1 http://ftp.de.debian.org unstable InRelease [208 kB]
-Get:2 http://ftp.de.debian.org unstable/main Sources [6216 kB]
-Get:3 http://incoming.debian.org unstable InRelease [208 kB]
-Ign http://incoming.debian.org InRelease
-Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://ftp.de.debian.org unstable/contrib Sources [54.5 kB]
-Get:6 http://ftp.de.debian.org unstable/non-free Sources [97.8 kB]
-Get:7 http://ftp.de.debian.org unstable/main s390 Packages [5802 kB]
-Get:8 http://incoming.debian.org unstable/main Sources [6221 kB]
-Get:9 http://ftp.de.debian.org unstable/contrib s390 Packages [36.7 kB]
-Ign http://ftp.de.debian.org unstable/contrib TranslationIndex
-Get:10 http://ftp.de.debian.org unstable/main TranslationIndex [2223 B]
-Get:11 http://ftp.de.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:12 http://ftp.de.debian.org unstable/main Translation-en [3936 kB]
-Get:13 http://incoming.debian.org unstable/contrib Sources [54.5 kB]
-Get:14 http://incoming.debian.org unstable/non-free Sources [97.7 kB]
-Get:15 http://incoming.debian.org unstable/main s390 Packages [5802 kB]
-Get:16 http://incoming.debian.org unstable/contrib s390 Packages [36.7 kB]
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:17 http://incoming.debian.org unstable/main TranslationIndex [2223 B]
-Get:18 http://incoming.debian.org Release [1601 B]
-Get:19 http://incoming.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:20 http://incoming.debian.org unstable/main Translation-en [3936 kB]
-Get:21 http://incoming.debian.org Sources [42.9 kB]
-Get:22 http://incoming.debian.org Packages [682 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 33.5 MB in 19s (1755 kB/s)
+Get:1 http://ftp.us.debian.org unstable Release.gpg [1571 B]
+Get:2 http://ftp.us.debian.org unstable Release [203 kB]
+Get:3 http://incoming.debian.org unstable Release.gpg [1571 B]
+Get:4 http://incoming.debian.org buildd-unstable Release.gpg [1571 B]
+Get:5 http://incoming.debian.org unstable Release [203 kB]
+Get:6 http://ftp.us.debian.org unstable/main Sources [6729 kB]
+Get:7 http://incoming.debian.org buildd-unstable Release [109 kB]
+Get:8 http://incoming.debian.org unstable/main Sources [6729 kB]
+Get:9 http://ftp.us.debian.org unstable/contrib Sources [53.7 kB]
+Get:10 http://ftp.us.debian.org unstable/non-free Sources [103 kB]
+Get:11 http://ftp.us.debian.org unstable/main s390 Packages [6191 kB]
+Get:12 http://ftp.us.debian.org unstable/contrib s390 Packages [36.6 kB]
+Get:13 http://incoming.debian.org unstable/contrib Sources [53.7 kB]
+Get:14 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:15 http://incoming.debian.org unstable/main s390 Packages [6191 kB]
+Get:16 http://incoming.debian.org unstable/contrib s390 Packages [36.6 kB]
+Get:17 http://incoming.debian.org buildd-unstable/main Sources [104 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib Sources [873 B]
+Get:19 http://incoming.debian.org buildd-unstable/non-free Sources [2683 B]
+Get:20 http://incoming.debian.org buildd-unstable/main s390 Packages [64.9 kB]
+Get:21 http://incoming.debian.org buildd-unstable/contrib s390 Packages [14 B]
+Fetched 26.9 MB in 57s (472 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -87,11 +80,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 288 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (dsc) [2030 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (tar) [283 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (diff) [3098 B]
-Fetched 288 kB in 1s (197 kB/s)
+Need to get 1058 kB of source archives.
+Get:1 http://ftp.us.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (dsc) [1409 B]
+Get:2 http://ftp.us.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (tar) [1052 kB]
+Get:3 http://ftp.us.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (diff) [4167 B]
+Fetched 1058 kB in 1s (962 kB/s)
Download complete and in download only mode
Check arch
@@ -104,517 +97,545 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.2-1)
+build-essential: already installed (11.6)
+fakeroot: already installed (1.18.4-2)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 26 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 48 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 26 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 48 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev
Checking for already installed dependencies...
-base-files: already installed (6.7)
-base-passwd: already installed (3.5.24)
-bash: already installed (4.2-1)
-coreutils: already installed (8.13-3.1)
+base-files: already installed (7.1)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2+dfsg-0.1)
+bsdutils: already installed (1:2.20.1-5.3)
+coreutils: already installed (8.20-3)
dash: already installed (0.5.7-3)
-debianutils: already installed (4.3)
-diffutils: already installed (1:3.2-2)
-dpkg: already installed (1.16.2)
-e2fsprogs: already installed (1.42.2-1)
-findutils: already installed (4.4.2-4)
-grep: already installed (2.10-1)
-gzip: already installed (1.4-5)
-hostname: already installed (3.11)
-ncurses-base: already installed (5.9-5)
-ncurses-bin: already installed (5.9-5)
-perl-base: already installed (5.14.2-9)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.5-1)
-sysvinit-utils: already installed (2.88dsf-22.1)
-sysvinit: already installed (2.88dsf-22.1)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-4)
-mount: already installed (2.20.1-4)
-util-linux: already installed (2.20.1-4)
-libc6-dev: already installed (2.13-27)
-gcc: already installed (4:4.6.3-3 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-3 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.2 >= 1.13.5 is satisfied)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1)
+findutils: already installed (4.4.2-5)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+libc-bin: already installed (2.13-38)
+login: already installed (1:4.1.5.1-1)
+mount: already installed (2.20.1-5.3)
+ncurses-base: already installed (5.9-10)
+ncurses-bin: already installed (5.9-10)
+perl-base: already installed (5.14.2-20)
+sed: already installed (4.2.1-10)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-0.1)
+util-linux: already installed (2.20.1-5.3)
+libc6-dev: already installed (2.13-38)
+gcc: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120410
+Using default version 9.20130516
cdbs: missing
r-base-dev: missing
-Using default version 2.15.0-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils cpp cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
- gcc gcc-4.6 gcc-4.6-base gcc-4.7-base gettext gettext-base gfortran
- gfortran-4.6 groff-base html2text intltool-debian libblas-dev libblas3gf
- libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1
- libfreetype6 libgcc1 libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5
+ bsdmainutils cpp-4.6 file fontconfig fontconfig-config fonts-dejavu-core
+ g++-4.6 gcc-4.6 gcc-4.6-base gcc-4.8-base gettext gettext-base gfortran
+ gfortran-4.6 groff-base html2text intltool-debian libasprintf-dev
+ libasprintf0c2 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6 libc6-dev
+ libcairo2 libcroco3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6
+ libgettextpo-dev libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libmpc3 libncurses5
libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev
libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
- libreadline-dev libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev
- libthai-data libthai0 libtiff4 libtinfo-dev libtinfo5 libunistring0 libx11-6
- libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
- libxft2 libxml2 libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf
- r-base-core tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common xdg-utils zip
+ libreadline-dev libreadline6-dev libsm6 libstdc++6-4.6-dev libthai-data
+ libthai0 libtiff5 libtinfo-dev libtinfo5 libunistring0 libx11-6 libx11-data
+ libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
+ libxml2 libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf r-base-core
+ tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g
zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts cpp-doc gcc-4.6-locales dh-make
- curl defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-multilib
- manpages-dev autoconf automake1.9 libtool flex bison gdb gcc-doc
- gcc-4.6-multilib libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg
- libquadmath-dbg libmudflap0-dbg gettext-doc gfortran-multilib gfortran-doc
- gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
- ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
- r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
- texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
- texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
- texi2html tclreadline gvfs-bin
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make
+ g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ libcloog-ppl0 libppl-c2 libppl7 gettext-doc gfortran-multilib gfortran-doc
+ gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff glibc-doc
+ ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp
+ ttf-arphic-gkai00mp ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base
+ texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
+ texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
+ texlive-latex-extra texinfo texi2html tcl-tclreadline gvfs-bin
Recommended packages:
- autotools-dev patchutils autopoint libglib2.0-data shared-mime-info libgpm2
- xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
- x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ autotools-dev curl wget lynx-cur autopoint manpages-dev libglib2.0-data
+ shared-mime-info libgpm2 xml-core libmail-sendmail-perl r-recommended
+ r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
- bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
- libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libffi5 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
- libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
- libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
- po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core unzip
- x11-common xdg-utils zip zlib1g-dev
+ bsdmainutils cdbs debhelper file fontconfig fontconfig-config
+ fonts-dejavu-core gcc-4.8-base gettext gettext-base gfortran gfortran-4.6
+ groff-base html2text intltool-debian libasprintf-dev libasprintf0c2
+ libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libffi6 libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0
+ libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3 libmagic1 libmpc3 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 libx11-6
+ libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
+ libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
+ r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+ zlib1g-dev
The following packages will be upgraded:
- cpp cpp-4.6 g++-4.6 gcc gcc-4.6 gcc-4.6-base gcc-4.7-base libgcc1 libgomp1
- libncurses5 libstdc++6 libstdc++6-4.6-dev libtinfo5 ncurses-bin
-14 upgraded, 76 newly installed, 0 to remove and 12 not upgraded.
-Need to get 69.6 MB of archives.
-After this operation, 115 MB of additional disk space will be used.
-Get:1 http://ftp.de.debian.org/debian/ unstable/main ncurses-bin s390 5.9-6 [336 kB]
-Get:2 http://ftp.de.debian.org/debian/ unstable/main libgomp1 s390 4.7.0-3 [33.4 kB]
-Get:3 http://ftp.de.debian.org/debian/ unstable/main gcc-4.7-base s390 4.7.0-3 [139 kB]
-Get:4 http://ftp.de.debian.org/debian/ unstable/main libstdc++6 s390 4.7.0-3 [365 kB]
-Get:5 http://ftp.de.debian.org/debian/ unstable/main libgcc1 s390 1:4.7.0-3 [31.1 kB]
-Get:6 http://ftp.de.debian.org/debian/ unstable/main libtinfo5 s390 5.9-6 [279 kB]
-Get:7 http://ftp.de.debian.org/debian/ unstable/main libncurses5 s390 5.9-6 [300 kB]
-Get:8 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390 1.2.1-1 [40.0 kB]
-Get:9 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390 5.11-1 [260 kB]
-Get:10 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390 1:8.30-4 [247 kB]
-Get:11 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390 2.1.0-1 [140 kB]
-Get:12 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 s390 2.4.9-1 [449 kB]
-Get:13 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:14 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3.1 [219 kB]
-Get:15 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 s390 2.8.0-3.1 [286 kB]
-Get:16 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 s390 0.24.4-1 [376 kB]
-Get:17 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 s390 1.2.49-1 [191 kB]
-Get:18 http://ftp.de.debian.org/debian/ unstable/main libxau6 s390 1:1.0.7-1 [18.6 kB]
-Get:19 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 s390 1:1.1.0-4 [23.8 kB]
-Get:20 http://ftp.de.debian.org/debian/ unstable/main libxcb1 s390 1.8.1-1 [53.2 kB]
-Get:21 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-4 [187 kB]
-Get:22 http://ftp.de.debian.org/debian/ unstable/main libx11-6 s390 2:1.4.4-4 [892 kB]
-Get:23 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 s390 1.8.1-1 [18.9 kB]
-Get:24 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 s390 1.8.1-1 [10.2 kB]
-Get:25 http://ftp.de.debian.org/debian/ unstable/main libxrender1 s390 1:0.9.6-2 [31.2 kB]
-Get:26 http://ftp.de.debian.org/debian/ unstable/main libcairo2 s390 1.12.0-2 [901 kB]
-Get:27 http://ftp.de.debian.org/debian/ unstable/main libffi5 s390 3.0.10-3 [25.3 kB]
-Get:28 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390 2.32.0-4 [2099 kB]
-Get:29 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390 2.7.8.dfsg-7 [882 kB]
-Get:30 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390 0.6.5-1 [150 kB]
-Get:31 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 s390 0.2.5-3 [29.7 kB]
-Get:32 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 s390 4.7.0-3 [291 kB]
-Get:33 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.6+12 [283 kB]
-Get:34 http://ftp.de.debian.org/debian/ unstable/main libice6 s390 2:1.0.8-2 [63.6 kB]
-Get:35 http://ftp.de.debian.org/debian/ unstable/main libjpeg8 s390 8d-1 [141 kB]
-Get:36 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.17-1 [205 kB]
-Get:37 http://ftp.de.debian.org/debian/ unstable/main libthai0 s390 0.1.17-1 [46.0 kB]
-Get:38 http://ftp.de.debian.org/debian/ unstable/main libxft2 s390 2.2.0-3 [60.3 kB]
-Get:39 http://ftp.de.debian.org/debian/ unstable/main fontconfig s390 2.8.0-3.1 [336 kB]
-Get:40 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 s390 1.30.0-1 [469 kB]
-Get:41 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 s390 1:8.30-4 [125 kB]
-Get:42 http://ftp.de.debian.org/debian/ unstable/main libsm6 s390 2:1.2.1-2 [35.0 kB]
-Get:43 http://ftp.de.debian.org/debian/ unstable/main libtiff4 s390 3.9.6-2 [210 kB]
-Get:44 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390 0.9.3-5 [433 kB]
-Get:45 http://ftp.de.debian.org/debian/ unstable/main libxext6 s390 2:1.3.0-3 [52.3 kB]
-Get:46 http://ftp.de.debian.org/debian/ unstable/main libxss1 s390 1:1.2.1-2 [16.8 kB]
-Get:47 http://ftp.de.debian.org/debian/ unstable/main libxt6 s390 1:1.1.1-2 [206 kB]
-Get:48 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390 9.0.1 [213 kB]
-Get:49 http://ftp.de.debian.org/debian/ unstable/main groff-base s390 1.21-7 [1145 kB]
-Get:50 http://ftp.de.debian.org/debian/ unstable/main man-db s390 2.6.1-2 [1068 kB]
-Get:51 http://ftp.de.debian.org/debian/ unstable/main g++-4.6 s390 4.6.3-3 [5891 kB]
-Get:52 http://ftp.de.debian.org/debian/ unstable/main libstdc++6-4.6-dev s390 4.6.3-3 [1676 kB]
-Get:53 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6 s390 4.6.3-3 [4176 kB]
-Get:54 http://ftp.de.debian.org/debian/ unstable/main cpp-4.6 s390 4.6.3-3 [3856 kB]
-Get:55 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6-base s390 4.6.3-3 [139 kB]
-Get:56 http://ftp.de.debian.org/debian/ unstable/main file s390 5.11-1 [53.7 kB]
-Get:57 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390 0.18.1.1-5 [143 kB]
-Get:58 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.109 [79.4 kB]
-Get:59 http://ftp.de.debian.org/debian/ unstable/main cpp s390 4:4.6.3-4 [16.3 kB]
-Get:60 http://ftp.de.debian.org/debian/ unstable/main html2text s390 1.3.2a-15 [101 kB]
-Get:61 http://ftp.de.debian.org/debian/ unstable/main gettext s390 0.18.1.1-5 [2073 kB]
-Get:62 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:63 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:64 http://ftp.de.debian.org/debian/ unstable/main debhelper all 9.20120410 [694 kB]
-Get:65 http://ftp.de.debian.org/debian/ unstable/main dpatch all 2.0.35 [95.2 kB]
-Get:66 http://ftp.de.debian.org/debian/ unstable/main gcc s390 4:4.6.3-4 [5016 B]
-Get:67 http://ftp.de.debian.org/debian/ unstable/main gfortran-4.6 s390 4.6.3-3 [4521 kB]
-Get:68 http://ftp.de.debian.org/debian/ unstable/main gfortran s390 4:4.6.3-4 [1126 B]
-Get:69 http://ftp.de.debian.org/debian/ unstable/main libblas3gf s390 1.2.20110419-2 [191 kB]
-Get:70 http://ftp.de.debian.org/debian/ unstable/main libblas-dev s390 1.2.20110419-2 [203 kB]
-Get:71 http://ftp.de.debian.org/debian/ unstable/main libbz2-dev s390 1.0.6-1 [35.7 kB]
-Get:72 http://ftp.de.debian.org/debian/ unstable/main libjpeg8-dev s390 8d-1 [243 kB]
-Get:73 http://ftp.de.debian.org/debian/ unstable/main liblapack3gf s390 3.3.1-1 [1720 kB]
-Get:74 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev s390 3.3.1-1 [1920 kB]
-Get:75 http://ftp.de.debian.org/debian/ unstable/main libtinfo-dev s390 5.9-6 [113 kB]
-Get:76 http://ftp.de.debian.org/debian/ unstable/main libncurses5-dev s390 5.9-6 [398 kB]
-Get:77 http://ftp.de.debian.org/debian/ unstable/main libpaper1 s390 1.1.24+nmu1 [21.9 kB]
-Get:78 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils s390 1.1.24+nmu1 [18.4 kB]
-Get:79 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev s390 1:8.30-4 [351 kB]
-Get:80 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390 1:1.2.6.dfsg-2 [213 kB]
-Get:81 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev s390 1.2.49-1 [269 kB]
-Get:82 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev s390 6.2-8 [258 kB]
-Get:83 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev s390 6.2-8 [894 B]
-Get:84 http://ftp.de.debian.org/debian/ unstable/main zip s390 3.0-4 [347 kB]
-Get:85 http://ftp.de.debian.org/debian/ unstable/main unzip s390 6.0-6 [195 kB]
-Get:86 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB]
-Get:87 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 s390 8.5.11-1 [1654 kB]
-Get:88 http://ftp.de.debian.org/debian/ unstable/main tk8.5 s390 8.5.11-1 [1200 kB]
-Get:89 http://ftp.de.debian.org/debian/ unstable/main r-base-core s390 2.15.0-1 [20.4 MB]
-Get:90 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 2.15.0-1 [3900 B]
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libc-dev-bin libc6 libc6-dev
+ libncurses5 libstdc++6-4.6-dev libtinfo5 ncurses-bin zlib1g
+12 upgraded, 84 newly installed, 0 to remove and 36 not upgraded.
+Need to get 76.4 MB of archives.
+After this operation, 117 MB of additional disk space will be used.
+Get:1 http://ftp.us.debian.org/debian/ unstable/main libc6-dev s390 2.17-3 [2826 kB]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main libcroco3 s390 0.6.8-2 [129 kB]
+Get:3 http://ftp.us.debian.org/debian/ unstable/main libc-dev-bin s390 2.17-3 [232 kB]
+Get:4 http://ftp.us.debian.org/debian/ unstable/main libc6 s390 2.17-3 [4509 kB]
+Get:5 http://ftp.us.debian.org/debian/ unstable/main libtinfo5 s390 5.9+20130504-1 [299 kB]
+Get:6 http://ftp.us.debian.org/debian/ unstable/main libncurses5 s390 5.9+20130504-1 [116 kB]
+Get:7 http://ftp.us.debian.org/debian/ unstable/main ncurses-bin s390 5.9+20130504-1 [365 kB]
+Get:8 http://ftp.us.debian.org/debian/ unstable/main zlib1g s390 1:1.2.8.dfsg-1 [92.8 kB]
+Get:9 http://ftp.us.debian.org/debian/ unstable/main libpipeline1 s390 1.2.3-1 [41.2 kB]
+Get:10 http://ftp.us.debian.org/debian/ unstable/main groff-base s390 1.22.2-2 [713 kB]
+Get:11 http://ftp.us.debian.org/debian/ unstable/main bsdmainutils s390 9.0.5 [213 kB]
+Get:12 http://ftp.us.debian.org/debian/ unstable/main man-db s390 2.6.3-6 [884 kB]
+Get:13 http://ftp.us.debian.org/debian/ unstable/main libasprintf0c2 s390 0.18.1.1-10 [27.2 kB]
+Get:14 http://ftp.us.debian.org/debian/ unstable/main libmagic1 s390 1:5.14-1 [219 kB]
+Get:15 http://ftp.us.debian.org/debian/ unstable/main libpcre3 s390 1:8.31-2 [253 kB]
+Get:16 http://ftp.us.debian.org/debian/ unstable/main libxml2 s390 2.8.0+dfsg1-7+nmu1 [892 kB]
+Get:17 http://ftp.us.debian.org/debian/ unstable/main libexpat1 s390 2.1.0-3 [140 kB]
+Get:18 http://ftp.us.debian.org/debian/ unstable/main libfreetype6 s390 2.4.9-1.1 [449 kB]
+Get:19 http://ftp.us.debian.org/debian/ unstable/main ucf all 3.0025+nmu3 [70.8 kB]
+Get:20 http://ftp.us.debian.org/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
+Get:21 http://ftp.us.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
+Get:22 http://ftp.us.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:23 http://ftp.us.debian.org/debian/ unstable/main libfontconfig1 s390 2.9.0-7.1 [303 kB]
+Get:24 http://ftp.us.debian.org/debian/ unstable/main libpixman-1-0 s390 0.26.0-4 [395 kB]
+Get:25 http://ftp.us.debian.org/debian/ unstable/main libpng12-0 s390 1.2.49-4 [192 kB]
+Get:26 http://ftp.us.debian.org/debian/ unstable/main libxau6 s390 1:1.0.7-1 [18.6 kB]
+Get:27 http://ftp.us.debian.org/debian/ unstable/main libxdmcp6 s390 1:1.1.1-1 [26.6 kB]
+Get:28 http://ftp.us.debian.org/debian/ unstable/main libxcb1 s390 1.8.1-2 [53.4 kB]
+Get:29 http://ftp.us.debian.org/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:30 http://ftp.us.debian.org/debian/ unstable/main libx11-6 s390 2:1.5.0-1 [904 kB]
+Get:31 http://ftp.us.debian.org/debian/ unstable/main libxcb-render0 s390 1.8.1-2 [19.1 kB]
+Get:32 http://ftp.us.debian.org/debian/ unstable/main libxcb-shm0 s390 1.8.1-2 [10.4 kB]
+Get:33 http://ftp.us.debian.org/debian/ unstable/main libxext6 s390 2:1.3.1-2 [55.2 kB]
+Get:34 http://ftp.us.debian.org/debian/ unstable/main libxrender1 s390 1:0.9.7-1 [32.1 kB]
+Get:35 http://ftp.us.debian.org/debian/ unstable/main libcairo2 s390 1.12.14-4 [1012 kB]
+Get:36 http://ftp.us.debian.org/debian/ unstable/main libffi6 s390 3.0.13-4 [20.5 kB]
+Get:37 http://ftp.us.debian.org/debian/ unstable/main libglib2.0-0 s390 2.36.1-2build1 [1994 kB]
+Get:38 http://ftp.us.debian.org/debian/ unstable/main libdatrie1 s390 0.2.6-2 [30.5 kB]
+Get:39 http://ftp.us.debian.org/debian/ unstable/main libunistring0 s390 0.9.3-5 [433 kB]
+Get:40 http://ftp.us.debian.org/debian/ unstable/main libgettextpo0 s390 0.18.1.1-10 [147 kB]
+Get:41 http://ftp.us.debian.org/debian/ unstable/main gcc-4.8-base s390 4.8.0-7 [148 kB]
+Get:42 http://ftp.us.debian.org/debian/ unstable/main libgfortran3 s390 4.8.0-7 [293 kB]
+Get:43 http://ftp.us.debian.org/debian/ unstable/main x11-common all 1:7.7+3 [284 kB]
+Get:44 http://ftp.us.debian.org/debian/ unstable/main libice6 s390 2:1.0.8-2 [63.6 kB]
+Get:45 http://ftp.us.debian.org/debian/ unstable/main libjpeg8 s390 8d-1 [141 kB]
+Get:46 http://ftp.us.debian.org/debian/ unstable/main libthai-data all 0.1.19-2 [156 kB]
+Get:47 http://ftp.us.debian.org/debian/ unstable/main libthai0 s390 0.1.19-2 [43.7 kB]
+Get:48 http://ftp.us.debian.org/debian/ unstable/main libxft2 s390 2.3.1-1 [62.8 kB]
+Get:49 http://ftp.us.debian.org/debian/ unstable/main fontconfig s390 2.9.0-7.1 [350 kB]
+Get:50 http://ftp.us.debian.org/debian/ unstable/main libpango1.0-0 s390 1.30.0-1 [469 kB]
+Get:51 http://ftp.us.debian.org/debian/ unstable/main libpaper1 s390 1.1.24+nmu2 [22.1 kB]
+Get:52 http://ftp.us.debian.org/debian/ unstable/main libpcrecpp0 s390 1:8.31-2 [129 kB]
+Get:53 http://ftp.us.debian.org/debian/ unstable/main libsm6 s390 2:1.2.1-2 [35.0 kB]
+Get:54 http://ftp.us.debian.org/debian/ unstable/main libjbig0 s390 2.0-2 [33.8 kB]
+Get:55 http://ftp.us.debian.org/debian/ unstable/main libtiff5 s390 4.0.2-6 [249 kB]
+Get:56 http://ftp.us.debian.org/debian/ unstable/main libxss1 s390 1:1.2.2-1 [17.6 kB]
+Get:57 http://ftp.us.debian.org/debian/ unstable/main libxt6 s390 1:1.1.3-1 [210 kB]
+Get:58 http://ftp.us.debian.org/debian/ unstable/main libmpc3 s390 1.0.1-1 [44.9 kB]
+Get:59 http://ftp.us.debian.org/debian/ unstable/main file s390 1:5.14-1 [54.4 kB]
+Get:60 http://ftp.us.debian.org/debian/ unstable/main gettext-base s390 0.18.1.1-10 [152 kB]
+Get:61 http://ftp.us.debian.org/debian/ unstable/main cdbs all 0.4.121 [80.5 kB]
+Get:62 http://ftp.us.debian.org/debian/ unstable/main libstdc++6-4.6-dev s390 4.6.4-2 [1677 kB]
+Get:63 http://ftp.us.debian.org/debian/ unstable/main g++-4.6 s390 4.6.4-2 [5806 kB]
+Get:64 http://ftp.us.debian.org/debian/ unstable/main gcc-4.6 s390 4.6.4-2 [4104 kB]
+Get:65 http://ftp.us.debian.org/debian/ unstable/main cpp-4.6 s390 4.6.4-2 [3775 kB]
+Get:66 http://ftp.us.debian.org/debian/ unstable/main gcc-4.6-base s390 4.6.4-2 [142 kB]
+Get:67 http://ftp.us.debian.org/debian/ unstable/main html2text s390 1.3.2a-15 [101 kB]
+Get:68 http://ftp.us.debian.org/debian/ unstable/main libasprintf-dev s390 0.18.1.1-10 [27.1 kB]
+Get:69 http://ftp.us.debian.org/debian/ unstable/main libgettextpo-dev s390 0.18.1.1-10 [182 kB]
+Get:70 http://ftp.us.debian.org/debian/ unstable/main gettext s390 0.18.1.1-10 [1800 kB]
+Get:71 http://ftp.us.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:72 http://ftp.us.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:73 http://ftp.us.debian.org/debian/ unstable/main debhelper all 9.20130516 [708 kB]
+Get:74 http://ftp.us.debian.org/debian/ unstable/main gfortran-4.6 s390 4.6.4-2 [4443 kB]
+Get:75 http://ftp.us.debian.org/debian/ unstable/main gfortran s390 4:4.6.3-8 [1124 B]
+Get:76 http://ftp.us.debian.org/debian/ unstable/main libblas3 s390 1.2.20110419-5 [192 kB]
+Get:77 http://ftp.us.debian.org/debian/ unstable/main libblas-dev s390 1.2.20110419-5 [203 kB]
+Get:78 http://ftp.us.debian.org/debian/ unstable/main libbz2-dev s390 1.0.6-4 [35.9 kB]
+Get:79 http://ftp.us.debian.org/debian/ unstable/main libjpeg8-dev s390 8d-1 [243 kB]
+Get:80 http://ftp.us.debian.org/debian/ unstable/main liblapack3 s390 3.4.2+dfsg-1 [1733 kB]
+Get:81 http://ftp.us.debian.org/debian/ unstable/main liblapack-dev s390 3.4.2+dfsg-1 [2037 kB]
+Get:82 http://ftp.us.debian.org/debian/ unstable/main libtinfo-dev s390 5.9+20130504-1 [116 kB]
+Get:83 http://ftp.us.debian.org/debian/ unstable/main libncurses5-dev s390 5.9+20130504-1 [215 kB]
+Get:84 http://ftp.us.debian.org/debian/ unstable/main libpaper-utils s390 1.1.24+nmu2 [18.5 kB]
+Get:85 http://ftp.us.debian.org/debian/ unstable/main libpcre3-dev s390 1:8.31-2 [358 kB]
+Get:86 http://ftp.us.debian.org/debian/ unstable/main zlib1g-dev s390 1:1.2.8.dfsg-1 [217 kB]
+Get:87 http://ftp.us.debian.org/debian/ unstable/main libpng12-dev s390 1.2.49-4 [270 kB]
+Get:88 http://ftp.us.debian.org/debian/ unstable/main libreadline6-dev s390 6.2+dfsg-0.1 [186 kB]
+Get:89 http://ftp.us.debian.org/debian/ unstable/main libreadline-dev s390 6.2+dfsg-0.1 [896 B]
+Get:90 http://ftp.us.debian.org/debian/ unstable/main zip s390 3.0-7 [349 kB]
+Get:91 http://ftp.us.debian.org/debian/ unstable/main unzip s390 6.0-9 [197 kB]
+Get:92 http://ftp.us.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:93 http://ftp.us.debian.org/debian/ unstable/main tcl8.5 s390 8.5.11-2 [1656 kB]
+Get:94 http://ftp.us.debian.org/debian/ unstable/main tk8.5 s390 8.5.11-2 [1203 kB]
+Get:95 http://ftp.us.debian.org/debian/ unstable/main r-base-core s390 3.0.1-1 [21.4 MB]
+Get:96 http://ftp.us.debian.org/debian/ unstable/main r-base-dev all 3.0.1-1 [3896 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 69.6 MB in 8s (8313 kB/s)
-(Reading database ... 10731 files and directories currently installed.)
-Preparing to replace ncurses-bin 5.9-5 (using .../ncurses-bin_5.9-6_s390.deb) ...
-Unpacking replacement ncurses-bin ...
-Setting up ncurses-bin (5.9-6) ...
-(Reading database ... 10731 files and directories currently installed.)
-Preparing to replace libgomp1:s390 4.7.0-1 (using .../libgomp1_4.7.0-3_s390.deb) ...
-Unpacking replacement libgomp1:s390 ...
-Preparing to replace gcc-4.7-base:s390 4.7.0-1 (using .../gcc-4.7-base_4.7.0-3_s390.deb) ...
-Unpacking replacement gcc-4.7-base:s390 ...
-Setting up gcc-4.7-base:s390 (4.7.0-3) ...
-(Reading database ... 10731 files and directories currently installed.)
-Preparing to replace libstdc++6:s390 4.7.0-1 (using .../libstdc++6_4.7.0-3_s390.deb) ...
-Unpacking replacement libstdc++6:s390 ...
-Setting up libstdc++6:s390 (4.7.0-3) ...
-(Reading database ... 10731 files and directories currently installed.)
-Preparing to replace libgcc1:s390 1:4.7.0-1 (using .../libgcc1_1%3a4.7.0-3_s390.deb) ...
-Unpacking replacement libgcc1:s390 ...
-Setting up libgcc1:s390 (1:4.7.0-3) ...
-(Reading database ... 10731 files and directories currently installed.)
-Preparing to replace libtinfo5:s390 5.9-5 (using .../libtinfo5_5.9-6_s390.deb) ...
+Fetched 76.4 MB in 35s (2125 kB/s)
+(Reading database ... 10855 files and directories currently installed.)
+Preparing to replace libc6-dev:s390 2.13-38 (using .../libc6-dev_2.17-3_s390.deb) ...
+Unpacking replacement libc6-dev:s390 ...
+Preparing to replace libc-dev-bin 2.13-38 (using .../libc-dev-bin_2.17-3_s390.deb) ...
+Unpacking replacement libc-dev-bin ...
+Preparing to replace libc6:s390 2.13-38 (using .../archives/libc6_2.17-3_s390.deb) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Unpacking replacement libc6:s390 ...
+Setting up libc6:s390 (2.17-3) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Nothing to restart.
+(Reading database ... 10877 files and directories currently installed.)
+Preparing to replace libtinfo5:s390 5.9-10 (using .../libtinfo5_5.9+20130504-1_s390.deb) ...
Unpacking replacement libtinfo5:s390 ...
-Setting up libtinfo5:s390 (5.9-6) ...
-(Reading database ... 10731 files and directories currently installed.)
-Preparing to replace libncurses5:s390 5.9-5 (using .../libncurses5_5.9-6_s390.deb) ...
+Setting up libtinfo5:s390 (5.9+20130504-1) ...
+(Reading database ... 10877 files and directories currently installed.)
+Preparing to replace libncurses5:s390 5.9-10 (using .../libncurses5_5.9+20130504-1_s390.deb) ...
Unpacking replacement libncurses5:s390 ...
-Setting up libncurses5:s390 (5.9-6) ...
+Setting up libncurses5:s390 (5.9+20130504-1) ...
+(Reading database ... 10877 files and directories currently installed.)
+Preparing to replace ncurses-bin 5.9-10 (using .../ncurses-bin_5.9+20130504-1_s390.deb) ...
+Unpacking replacement ncurses-bin ...
+Setting up ncurses-bin (5.9+20130504-1) ...
+(Reading database ... 10875 files and directories currently installed.)
+Preparing to replace zlib1g:s390 1:1.2.7.dfsg-13 (using .../zlib1g_1%3a1.2.8.dfsg-1_s390.deb) ...
+Unpacking replacement zlib1g:s390 ...
+Setting up zlib1g:s390 (1:1.2.8.dfsg-1) ...
Selecting previously unselected package libpipeline1:s390.
-(Reading database ... 10731 files and directories currently installed.)
-Unpacking libpipeline1:s390 (from .../libpipeline1_1.2.1-1_s390.deb) ...
+(Reading database ... 10875 files and directories currently installed.)
+Unpacking libpipeline1:s390 (from .../libpipeline1_1.2.3-1_s390.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.22.2-2_s390.deb) ...
+Selecting previously unselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_s390.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.3-6_s390.deb) ...
+Selecting previously unselected package libasprintf0c2:s390.
+Unpacking libasprintf0c2:s390 (from .../libasprintf0c2_0.18.1.1-10_s390.deb) ...
Selecting previously unselected package libmagic1:s390.
-Unpacking libmagic1:s390 (from .../libmagic1_5.11-1_s390.deb) ...
+Unpacking libmagic1:s390 (from .../libmagic1_1%3a5.14-1_s390.deb) ...
Selecting previously unselected package libpcre3:s390.
-Unpacking libpcre3:s390 (from .../libpcre3_1%3a8.30-4_s390.deb) ...
+Unpacking libpcre3:s390 (from .../libpcre3_1%3a8.31-2_s390.deb) ...
+Selecting previously unselected package libxml2:s390.
+Unpacking libxml2:s390 (from .../libxml2_2.8.0+dfsg1-7+nmu1_s390.deb) ...
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-Unpacking libexpat1:s390 (from .../libexpat1_2.1.0-1_s390.deb) ...
+Unpacking libexpat1:s390 (from .../libexpat1_2.1.0-3_s390.deb) ...
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+Unpacking libfreetype6:s390 (from .../libfreetype6_2.4.9-1.1_s390.deb) ...
+Selecting previously unselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ...
+Moving old data out of the way
+Selecting previously unselected package fonts-dejavu-core.
+Unpacking fonts-dejavu-core (from .../fonts-dejavu-core_2.33+svn2514-3_all.deb) ...
Selecting previously unselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33+svn2514-3_all.deb) ...
Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ...
Selecting previously unselected package libfontconfig1:s390.
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+Unpacking libfontconfig1:s390 (from .../libfontconfig1_2.9.0-7.1_s390.deb) ...
Selecting previously unselected package libpixman-1-0:s390.
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+Unpacking libpixman-1-0:s390 (from .../libpixman-1-0_0.26.0-4_s390.deb) ...
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-Unpacking libpng12-0:s390 (from .../libpng12-0_1.2.49-1_s390.deb) ...
+Unpacking libpng12-0:s390 (from .../libpng12-0_1.2.49-4_s390.deb) ...
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Unpacking libxau6:s390 (from .../libxau6_1%3a1.0.7-1_s390.deb) ...
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+Unpacking libxdmcp6:s390 (from .../libxdmcp6_1%3a1.1.1-1_s390.deb) ...
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-Unpacking libxcb1:s390 (from .../libxcb1_1.8.1-1_s390.deb) ...
+Unpacking libxcb1:s390 (from .../libxcb1_1.8.1-2_s390.deb) ...
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+Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ...
Selecting previously unselected package libx11-6:s390.
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+Unpacking libx11-6:s390 (from .../libx11-6_2%3a1.5.0-1_s390.deb) ...
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+Unpacking libxcb-render0:s390 (from .../libxcb-render0_1.8.1-2_s390.deb) ...
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+Unpacking libxcb-shm0:s390 (from .../libxcb-shm0_1.8.1-2_s390.deb) ...
+Selecting previously unselected package libxext6:s390.
+Unpacking libxext6:s390 (from .../libxext6_2%3a1.3.1-2_s390.deb) ...
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-Unpacking libxrender1:s390 (from .../libxrender1_1%3a0.9.6-2_s390.deb) ...
+Unpacking libxrender1:s390 (from .../libxrender1_1%3a0.9.7-1_s390.deb) ...
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-Unpacking libffi5:s390 (from .../libffi5_3.0.10-3_s390.deb) ...
+Unpacking libcairo2:s390 (from .../libcairo2_1.12.14-4_s390.deb) ...
+Selecting previously unselected package libffi6:s390.
+Unpacking libffi6:s390 (from .../libffi6_3.0.13-4_s390.deb) ...
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-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-7_s390.deb) ...
+Unpacking libglib2.0-0:s390 (from .../libglib2.0-0_2.36.1-2build1_s390.deb) ...
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-Unpacking libcroco3:s390 (from .../libcroco3_0.6.5-1_s390.deb) ...
+Unpacking libcroco3:s390 (from .../libcroco3_0.6.8-2_s390.deb) ...
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-Unpacking libdatrie1:s390 (from .../libdatrie1_0.2.5-3_s390.deb) ...
+Unpacking libdatrie1:s390 (from .../libdatrie1_0.2.6-2_s390.deb) ...
+Selecting previously unselected package libunistring0:s390.
+Unpacking libunistring0:s390 (from .../libunistring0_0.9.3-5_s390.deb) ...
+Selecting previously unselected package libgettextpo0:s390.
+Unpacking libgettextpo0:s390 (from .../libgettextpo0_0.18.1.1-10_s390.deb) ...
+Selecting previously unselected package gcc-4.8-base:s390.
+Unpacking gcc-4.8-base:s390 (from .../gcc-4.8-base_4.8.0-7_s390.deb) ...
Selecting previously unselected package libgfortran3:s390.
-Unpacking libgfortran3:s390 (from .../libgfortran3_4.7.0-3_s390.deb) ...
+Unpacking libgfortran3:s390 (from .../libgfortran3_4.8.0-7_s390.deb) ...
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-Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
+Unpacking x11-common (from .../x11-common_1%3a7.7+3_all.deb) ...
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Unpacking libice6:s390 (from .../libice6_2%3a1.0.8-2_s390.deb) ...
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+Unpacking libthai-data (from .../libthai-data_0.1.19-2_all.deb) ...
Selecting previously unselected package libthai0:s390.
-Unpacking libthai0:s390 (from .../libthai0_0.1.17-1_s390.deb) ...
+Unpacking libthai0:s390 (from .../libthai0_0.1.19-2_s390.deb) ...
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-Unpacking libxft2:s390 (from .../libxft2_2.2.0-3_s390.deb) ...
+Unpacking libxft2:s390 (from .../libxft2_2.3.1-1_s390.deb) ...
Selecting previously unselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-3.1_s390.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_s390.deb) ...
Selecting previously unselected package libpango1.0-0:s390.
Unpacking libpango1.0-0:s390 (from .../libpango1.0-0_1.30.0-1_s390.deb) ...
+Selecting previously unselected package libpaper1:s390.
+Unpacking libpaper1:s390 (from .../libpaper1_1.1.24+nmu2_s390.deb) ...
Selecting previously unselected package libpcrecpp0:s390.
-Unpacking libpcrecpp0:s390 (from .../libpcrecpp0_1%3a8.30-4_s390.deb) ...
+Unpacking libpcrecpp0:s390 (from .../libpcrecpp0_1%3a8.31-2_s390.deb) ...
Selecting previously unselected package libsm6:s390.
Unpacking libsm6:s390 (from .../libsm6_2%3a1.2.1-2_s390.deb) ...
-Selecting previously unselected package libtiff4:s390.
-Unpacking libtiff4:s390 (from .../libtiff4_3.9.6-2_s390.deb) ...
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-Selecting previously unselected package libxext6:s390.
-Unpacking libxext6:s390 (from .../libxext6_2%3a1.3.0-3_s390.deb) ...
+Selecting previously unselected package libjbig0:s390.
+Unpacking libjbig0:s390 (from .../libjbig0_2.0-2_s390.deb) ...
+Selecting previously unselected package libtiff5:s390.
+Unpacking libtiff5:s390 (from .../libtiff5_4.0.2-6_s390.deb) ...
Selecting previously unselected package libxss1:s390.
-Unpacking libxss1:s390 (from .../libxss1_1%3a1.2.1-2_s390.deb) ...
+Unpacking libxss1:s390 (from .../libxss1_1%3a1.2.2-1_s390.deb) ...
Selecting previously unselected package libxt6:s390.
-Unpacking libxt6:s390 (from .../libxt6_1%3a1.1.1-2_s390.deb) ...
-Selecting previously unselected package bsdmainutils.
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-Preparing to replace g++-4.6 4.6.3-1 (using .../g++-4.6_4.6.3-3_s390.deb) ...
-Unpacking replacement g++-4.6 ...
-Preparing to replace libstdc++6-4.6-dev 4.6.3-1 (using .../libstdc++6-4.6-dev_4.6.3-3_s390.deb) ...
+Unpacking libxt6:s390 (from .../libxt6_1%3a1.1.3-1_s390.deb) ...
+Selecting previously unselected package libmpc3:s390.
+Unpacking libmpc3:s390 (from .../libmpc3_1.0.1-1_s390.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_1%3a5.14-1_s390.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_s390.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
+Preparing to replace libstdc++6-4.6-dev 4.6.3-15 (using .../libstdc++6-4.6-dev_4.6.4-2_s390.deb) ...
Unpacking replacement libstdc++6-4.6-dev ...
-Preparing to replace gcc-4.6 4.6.3-1 (using .../gcc-4.6_4.6.3-3_s390.deb) ...
+Preparing to replace g++-4.6 4.6.3-15 (using .../g++-4.6_4.6.4-2_s390.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.3-15 (using .../gcc-4.6_4.6.4-2_s390.deb) ...
Unpacking replacement gcc-4.6 ...
-Preparing to replace cpp-4.6 4.6.3-1 (using .../cpp-4.6_4.6.3-3_s390.deb) ...
+Preparing to replace cpp-4.6 4.6.3-15 (using .../cpp-4.6_4.6.4-2_s390.deb) ...
Unpacking replacement cpp-4.6 ...
-Preparing to replace gcc-4.6-base:s390 4.6.3-1 (using .../gcc-4.6-base_4.6.3-3_s390.deb) ...
+Preparing to replace gcc-4.6-base:s390 4.6.3-15 (using .../gcc-4.6-base_4.6.4-2_s390.deb) ...
Unpacking replacement gcc-4.6-base:s390 ...
-Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.11-1_s390.deb) ...
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-Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_s390.deb) ...
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-Preparing to replace cpp 4:4.6.3-3 (using .../cpp_4%3a4.6.3-4_s390.deb) ...
-Unpacking replacement cpp ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_s390.deb) ...
+Selecting previously unselected package libasprintf-dev:s390.
+Unpacking libasprintf-dev:s390 (from .../libasprintf-dev_0.18.1.1-10_s390.deb) ...
+Selecting previously unselected package libgettextpo-dev:s390.
+Unpacking libgettextpo-dev:s390 (from .../libgettextpo-dev_0.18.1.1-10_s390.deb) ...
Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-5_s390.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-10_s390.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
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-Unpacking dpatch (from .../archives/dpatch_2.0.35_all.deb) ...
-Preparing to replace gcc 4:4.6.3-3 (using .../gcc_4%3a4.6.3-4_s390.deb) ...
-Removing old gcc doc directory.
-Unpacking replacement gcc ...
+Unpacking debhelper (from .../debhelper_9.20130516_all.deb) ...
Selecting previously unselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-3_s390.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.4-2_s390.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.3-4_s390.deb) ...
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-Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_s390.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.3-8_s390.deb) ...
+Selecting previously unselected package libblas3.
+Unpacking libblas3 (from .../libblas3_1.2.20110419-5_s390.deb) ...
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-Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_s390.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_s390.deb) ...
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-Unpacking libbz2-dev:s390 (from .../libbz2-dev_1.0.6-1_s390.deb) ...
+Unpacking libbz2-dev:s390 (from .../libbz2-dev_1.0.6-4_s390.deb) ...
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Unpacking libjpeg8-dev:s390 (from .../libjpeg8-dev_8d-1_s390.deb) ...
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+Selecting previously unselected package liblapack3.
+Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_s390.deb) ...
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-Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_s390.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.4.2+dfsg-1_s390.deb) ...
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+Unpacking libtinfo-dev:s390 (from .../libtinfo-dev_5.9+20130504-1_s390.deb) ...
+Selecting previously unselected package libncurses5-dev:s390.
+Unpacking libncurses5-dev:s390 (from .../libncurses5-dev_5.9+20130504-1_s390.deb) ...
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-Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_s390.deb) ...
-Selecting previously unselected package libpcre3-dev.
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+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_s390.deb) ...
+Selecting previously unselected package libpcre3-dev:s390.
+Unpacking libpcre3-dev:s390 (from .../libpcre3-dev_1%3a8.31-2_s390.deb) ...
Selecting previously unselected package zlib1g-dev:s390.
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+Unpacking zlib1g-dev:s390 (from .../zlib1g-dev_1%3a1.2.8.dfsg-1_s390.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-1_s390.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_s390.deb) ...
Selecting previously unselected package libreadline6-dev:s390.
-Unpacking libreadline6-dev:s390 (from .../libreadline6-dev_6.2-8_s390.deb) ...
+Unpacking libreadline6-dev:s390 (from .../libreadline6-dev_6.2+dfsg-0.1_s390.deb) ...
Selecting previously unselected package libreadline-dev:s390.
-Unpacking libreadline-dev:s390 (from .../libreadline-dev_6.2-8_s390.deb) ...
+Unpacking libreadline-dev:s390 (from .../libreadline-dev_6.2+dfsg-0.1_s390.deb) ...
Selecting previously unselected package zip.
-Unpacking zip (from .../archives/zip_3.0-4_s390.deb) ...
+Unpacking zip (from .../archives/zip_3.0-7_s390.deb) ...
Selecting previously unselected package unzip.
-Unpacking unzip (from .../archives/unzip_6.0-6_s390.deb) ...
+Unpacking unzip (from .../archives/unzip_6.0-9_s390.deb) ...
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+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
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+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_s390.deb) ...
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-Unpacking tk8.5 (from .../tk8.5_8.5.11-1_s390.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_s390.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.15.0-1_s390.deb) ...
+Unpacking r-base-core (from .../r-base-core_3.0.1-1_s390.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.15.0-1_all.deb) ...
-Setting up libgomp1:s390 (4.7.0-3) ...
-Setting up libpipeline1:s390 (1.2.1-1) ...
-Setting up libmagic1:s390 (5.11-1) ...
-Setting up libpcre3:s390 (1:8.30-4) ...
-Setting up libexpat1:s390 (2.1.0-1) ...
-Setting up libfreetype6:s390 (2.4.9-1) ...
-Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3.1) ...
-Setting up libfontconfig1:s390 (2.8.0-3.1) ...
-Setting up libpixman-1-0:s390 (0.24.4-1) ...
-Setting up libpng12-0:s390 (1.2.49-1) ...
+Unpacking r-base-dev (from .../r-base-dev_3.0.1-1_all.deb) ...
+Setting up libc-dev-bin (2.17-3) ...
+Setting up libc6-dev:s390 (2.17-3) ...
+Setting up libpipeline1:s390 (1.2.3-1) ...
+Setting up groff-base (1.22.2-2) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.3-6) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:s390 (0.18.1.1-10) ...
+Setting up libmagic1:s390 (1:5.14-1) ...
+Setting up libpcre3:s390 (1:8.31-2) ...
+Setting up libxml2:s390 (2.8.0+dfsg1-7+nmu1) ...
+Setting up libexpat1:s390 (2.1.0-3) ...
+Setting up libfreetype6:s390 (2.4.9-1.1) ...
+Setting up ucf (3.0025+nmu3) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:s390 (2.9.0-7.1) ...
+Setting up libpixman-1-0:s390 (0.26.0-4) ...
+Setting up libpng12-0:s390 (1.2.49-4) ...
Setting up libxau6:s390 (1:1.0.7-1) ...
-Setting up libxdmcp6:s390 (1:1.1.0-4) ...
-Setting up libxcb1:s390 (1.8.1-1) ...
-Setting up libx11-data (2:1.4.4-4) ...
-Setting up libx11-6:s390 (2:1.4.4-4) ...
-Setting up libxcb-render0:s390 (1.8.1-1) ...
-Setting up libxcb-shm0:s390 (1.8.1-1) ...
-Setting up libxrender1:s390 (1:0.9.6-2) ...
-Setting up libcairo2:s390 (1.12.0-2) ...
-Setting up libffi5:s390 (3.0.10-3) ...
-Setting up libglib2.0-0:s390 (2.32.0-4) ...
+Setting up libxdmcp6:s390 (1:1.1.1-1) ...
+Setting up libxcb1:s390 (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:s390 (2:1.5.0-1) ...
+Setting up libxcb-render0:s390 (1.8.1-2) ...
+Setting up libxcb-shm0:s390 (1.8.1-2) ...
+Setting up libxext6:s390 (2:1.3.1-2) ...
+Setting up libxrender1:s390 (1:0.9.7-1) ...
+Setting up libcairo2:s390 (1.12.14-4) ...
+Setting up libffi6:s390 (3.0.13-4) ...
+Setting up libglib2.0-0:s390 (2.36.1-2build1) ...
No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-7) ...
-Setting up libcroco3:s390 (0.6.5-1) ...
-Setting up libdatrie1:s390 (0.2.5-3) ...
-Setting up libgfortran3:s390 (4.7.0-3) ...
-Setting up x11-common (1:7.6+12) ...
+Setting up libcroco3:s390 (0.6.8-2) ...
+Setting up libdatrie1:s390 (0.2.6-2) ...
+Setting up libunistring0:s390 (0.9.3-5) ...
+Setting up libgettextpo0:s390 (0.18.1.1-10) ...
+Setting up gcc-4.8-base:s390 (4.8.0-7) ...
+Setting up libgfortran3:s390 (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6:s390 (2:1.0.8-2) ...
Setting up libjpeg8:s390 (8d-1) ...
-Setting up libthai-data (0.1.17-1) ...
-Setting up libthai0:s390 (0.1.17-1) ...
-Setting up libxft2:s390 (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3.1) ...
-Cleaning up old fontconfig caches... done.
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:s390 (0.1.19-2) ...
+Setting up libxft2:s390 (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
Regenerating fonts cache... done.
Setting up libpango1.0-0:s390 (1.30.0-1) ...
-Setting up libpcrecpp0:s390 (1:8.30-4) ...
+Setting up libpaper1:s390 (1.1.24+nmu2) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpcrecpp0:s390 (1:8.31-2) ...
Setting up libsm6:s390 (2:1.2.1-2) ...
-Setting up libtiff4:s390 (3.9.6-2) ...
-Setting up libunistring0:s390 (0.9.3-5) ...
-Setting up libxext6:s390 (2:1.3.0-3) ...
-Setting up libxss1:s390 (1:1.2.1-2) ...
-Setting up libxt6:s390 (1:1.1.1-2) ...
-Setting up bsdmainutils (9.0.1) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
-Building database of manual pages ...
-Setting up gcc-4.6-base:s390 (4.6.3-3) ...
-Setting up cpp-4.6 (4.6.3-3) ...
-Setting up gcc-4.6 (4.6.3-3) ...
-Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.109) ...
-Setting up cpp (4:4.6.3-4) ...
+Setting up libjbig0:s390 (2.0-2) ...
+Setting up libtiff5:s390 (4.0.2-6) ...
+Setting up libxss1:s390 (1:1.2.2-1) ...
+Setting up libxt6:s390 (1:1.1.3-1) ...
+Setting up libmpc3:s390 (1.0.1-1) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
+Setting up gcc-4.6-base:s390 (4.6.4-2) ...
+Setting up cpp-4.6 (4.6.4-2) ...
+Setting up gcc-4.6 (4.6.4-2) ...
Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-5) ...
+Setting up libasprintf-dev:s390 (0.18.1.1-10) ...
+Setting up libgettextpo-dev:s390 (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120410) ...
-Setting up dpatch (2.0.35) ...
-Setting up gcc (4:4.6.3-4) ...
-Setting up gfortran-4.6 (4.6.3-3) ...
-Setting up gfortran (4:4.6.3-4) ...
-update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev:s390 (1.0.6-1) ...
+Setting up debhelper (9.20130516) ...
+Setting up gfortran-4.6 (4.6.4-2) ...
+Setting up gfortran (4:4.6.3-8) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:s390 (1.0.6-4) ...
Setting up libjpeg8-dev:s390 (8d-1) ...
-Setting up liblapack3gf (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev:s390 (5.9-6) ...
-Setting up libncurses5-dev (5.9-6) ...
-Setting up libpaper1 (1.1.24+nmu1) ...
-
-Creating config file /etc/papersize with new version
-Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcre3-dev (1:8.30-4) ...
-Setting up zlib1g-dev:s390 (1:1.2.6.dfsg-2) ...
-Setting up libpng12-dev (1.2.49-1) ...
-Setting up libreadline6-dev:s390 (6.2-8) ...
-Setting up libreadline-dev:s390 (6.2-8) ...
-Setting up zip (3.0-4) ...
-Setting up unzip (6.0-6) ...
-Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
-Setting up tcl8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.15.0-1) ...
-Setting R_PAPERSIZE_USER default to 'a4'
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:s390 (5.9+20130504-1) ...
+Setting up libncurses5-dev:s390 (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:s390 (1:8.31-2) ...
+Setting up zlib1g-dev:s390 (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:s390 (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:s390 (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.1-1) ...
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.15.0-1) ...
-Setting up g++-4.6 (4.6.3-3) ...
-Setting up libstdc++6-4.6-dev (4.6.3-3) ...
+Setting up r-base-dev (3.0.1-1) ...
+Setting up g++-4.6 (4.6.4-2) ...
+Setting up libstdc++6-4.6-dev (4.6.4-2) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 12 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 36 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-s390x s390 (s390x)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-3 gcc-4.6_4.6.3-3 libc6-dev_2.13-27 libstdc++6_4.7.0-3 libstdc++6-4.6-dev_4.6.3-3 linux-libc-dev_3.2.13-1
-Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.109 coreutils_8.13-3.1 cpp_4:4.6.3-4 cpp-4.6_4.6.3-3 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120410 debian-archive-keyring_2010.08.28 debianutils_4.3 diffutils_1:3.2-2 dpatch_2.0.35 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-1 e2fsprogs_1.42.2-1 fakeroot_1.18.2-1 file_5.11-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.3-3 g++-4.6_4.6.3-3 gcc_4:4.6.3-4 gcc-4.4-base_4.4.7-1 gcc-4.6_4.6.3-3 gcc-4.6-base_4.6.3-3 gcc-4.7-base_4.7.0-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.3-4 gfortran-4.6_4.6.3-3 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.10-1 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-27 libc-dev-bin_2.13-27 libc6_2.13-27 libc6-dev_2.13-27 libcairo2_1.12.0-2 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-1 libcroco3_0.6.5-1 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libexpat1_2.1.0-1 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-1+b1 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-3 libgdbm3_1.8.3-10 libgfortran3_4.7.0-3 libglib2.0-0_2.32.0-4 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-3 libice6_2:1.0.8-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-6 libncurses5-dev_5.9-6 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_1:8.30-4 libpcre3-dev_1:8.30-4 libpcrecpp0_1:8.30-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.49-1 libpng12-dev_1.2.49-1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.9-4 libsemanage-common_2.1.6-5 libsemanage1_2.1.6-5 libsepol1_2.1.4-2 libslang2_2.2.4-7 libsm6_2:1.2.1-2 libss2_1.42.2-1 libstdc++6_4.7.0-3 libstdc++6-4.6-dev_4.6.3-3 libswitch-perl_2.16-2 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-6 libtinfo5_5.9-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.2.13-1 login_1:4.1.5-1 lsb-base_4.1+Debian0 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-27 ncurses-base_5.9-5 ncurses-bin_5.9-6 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 r-base-core_2.15.0-1 r-base-dev_2.15.0-1 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2012b-1 ucf_3.0025+nmu2 unzip_6.0-6 util-linux_2.20.1-4 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.6_4.6.4-2 gcc-4.6_4.6.4-2 libc6-dev_2.17-3 libstdc++6_4.7.2-5 libstdc++6-4.6-dev_4.6.4-2 linux-libc-dev_3.2.39-2
+Package versions: apt_0.9.7.8 base-files_7.1 base-passwd_3.5.26 bash_4.2+dfsg-0.1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.20-3 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2 dash_0.5.7-3 debconf_1.5.49 debconf-i18n_1.5.49 debfoster_2.7-1.2 debhelper_9.20130516 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1 e2fsprogs_1.42.5-1 fakeroot_1.18.4-2 file_1:5.14-1 findutils_4.4.2-5 fontconfig_2.9.0-7.1 fontconfig-config_2.9.0-7.1 fonts-dejavu-core_2.33+svn2514-3 g++_4:4.6.3-8 g++-4.6_4.6.4-2 gcc_4:4.6.3-8 gcc-4.6_4.6.4-2 gcc-4.6-base_4.6.4-2 gcc-4.7-base_4.7.2-5 gcc-4.8-base_4.8.0-7 gettext_0.18.1.1-10 gettext-base_0.18.1.1-10 gfortran_4:4.6.3-8 gfortran-4.6_4.6.4-2 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.14-1 groff-base_1.22.2-2 gzip_1.5-1.1 hostname_3.12 html2text_1.3.2a-15 initscripts_2.88dsf-41 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7.8 libasprintf-dev_0.18.1.1-10 libasprintf0c2_0.18.1.1-10 libattr1_1:2.4.46-8 libblas-dev_1.2.20110419-5 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.3 libbz2-1.0_1.0.6-4 libbz2-dev_1.0.6-4 libc-bin_2.13-38 libc-dev-bin_2.17-3 libc6_2.17-3 libc6-dev_2.17-3 libcairo2_1.12.14-4 libclass-isa-perl_0.36-5 libcomerr2_1.42.5-1 libcroco3_0.6.8-2 libdatrie1_0.2.6-2 libdb5.1_5.1.29-5 libdpkg-perl_1.16.10 libexpat1_2.1.0-3 libffi6_3.0.13-4 libfontconfig1_2.9.0-7.1 libfreetype6_2.4.9-1.1 libgc1c2_1:7.1-9.1 libgcc1_1:4.7.2-5 libgdbm3_1.8.3-11 libgettextpo-dev_0.18.1.1-10 libgettextpo0_0.18.1.1-10 libgfortran3_4.8.0-7 libglib2.0-0_2.36.1-2build1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.2-5 libice6_2:1.0.8-2 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.4.2+dfsg-1 liblapack3_3.4.2+dfsg-1 liblocale-gettext-perl_1.05-7+b1 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-1 libmount1_2.20.1-5.3 libmpc2_0.9-4 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libncurses5_5.9+20130504-1 libncurses5-dev_5.9+20130504-1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.31-2 libpcre3-dev_1:8.31-2 libpcrecpp0_1:8.31-2 libpipeline1_1.2.3-1 libpixman-1-0_0.26.0-4 libpng12-0_1.2.49-4 libpng12-dev_1.2.49-4 libreadline-dev_6.2+dfsg-0.1 libreadline6_6.2+dfsg-0.1 libreadline6-dev_6.2+dfsg-0.1 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libss2_1.42.5-1 libstdc++6_4.7.2-5 libstdc++6-4.6-dev_4.6.4-2 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.19-2 libthai0_0.1.19-2 libtiff5_4.0.2-6 libtimedate-perl_1.2000-1 libtinfo-dev_5.9+20130504-1 libtinfo5_5.9+20130504-1 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23+nmu1 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.3 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-2 libxcb-shm0_1.8.1-2 libxcb1_1.8.1-2 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-7+nmu1 libxrender1_1:0.9.7-1 libxss1_1:1.2.2-1 libxt6_1:1.1.3-1 linux-libc-dev_3.2.39-2 login_1:4.1.5.1-1 lsb-base_4.1+Debian9 make_3.81-8.2 man-db_2.6.3-6 mawk_1.3.3-17 mount_2.20.1-5.3 multiarch-support_2.13-38 ncurses-base_5.9-10 ncurses-bin_5.9+20130504-1 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-20 perl-base_5.14.2-20 perl-modules_5.14.2-20 po-debconf_1.0.16+nmu2 r-base-core_3.0.1-1 r-base-dev_3.0.1-1 readline-common_6.2+dfsg-0.1 sed_4.2.1-10 sensible-utils_0.0.7 sudo_1.8.5p2-1+nmu1 sysv-rc_2.88dsf-41 sysvinit_2.88dsf-41 sysvinit-utils_2.88dsf-41 tar_1.26+dfsg-0.1 tcl8.5_8.5.11-2 tk8.5_8.5.11-2 ttf-dejavu-core_2.33+svn2514-3 tzdata_2013b-1 ucf_3.0025+nmu3 unzip_6.0-9 util-linux_2.20.1-5.3 x11-common_1:7.7+3 xdg-utils_1.1.0~rc1+git20111210-7 xz-utils_5.1.1alpha+20120614-2 zip_3.0-7 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -625,12 +646,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Apr 12 02:45:32 2012 UTC using RSA key ID 2295D502
+gpgv: Signature made Thu May 16 14:46:42 2013 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.12.0~dfsg-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.12.0~dfsg
-dpkg-source: info: unpacking r-bioc-limma_3.12.0~dfsg.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.12.0~dfsg-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.16.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.16.3~dfsg
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg-1.debian.tar.gz
Check disc space
────────────────
@@ -640,27 +661,12 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.12.0~dfsg-1
- dpkg-source --before-build r-bioc-limma-3.12.0~dfsg
+dpkg-buildpackage: source version 3.16.3~dfsg-1
+ dpkg-source --before-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: host architecture s390
fakeroot debian/rules clean
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
-/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390-5azzDZ/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390-5azzDZ/r-bioc-limma-3.12.0~dfsg'
-if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "reverse-patches" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-for dir in debian/patches ; do \
- rm -f $dir/*.log ; \
- done
dh_clean
rm -f debian/r-bioc-limma.substvars
rm -f debian/r-bioc-limma.*.debhelper
@@ -681,26 +687,9 @@ if test -d src; then \
fi
rm -f config.log config.status
debian/rules build-arch
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
-/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390-5azzDZ/r-bioc-limma-3.12.0~dfsg'
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390-5azzDZ/r-bioc-limma-3.12.0~dfsg'
-if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390-5azzDZ/r-bioc-limma-3.12.0~dfsg'
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390-5azzDZ/r-bioc-limma-3.12.0~dfsg'
fakeroot debian/rules binary-arch
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
@@ -712,26 +701,26 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
install -d debian/r-bioc-limma/usr/lib/R/site-library
-echo "R:Depends=r-base-core (>= 2.15.0-1)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 3.0.1-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390-5azzDZ/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390-zosg9V/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390-5azzDZ/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390-zosg9V/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390-5azzDZ/r-bioc-limma-3.12.0~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390-zosg9V/r-bioc-limma-3.16.3~dfsg/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fPIC -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390-5azzDZ/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390-5azzDZ/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390-5azzDZ/r-bioc-limma-3.12.0~dfsg/src'
-installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390-5azzDZ/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390-zosg9V/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390-zosg9V/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390-zosg9V/r-bioc-limma-3.16.3~dfsg/src'
+installing to /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390-zosg9V/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -739,22 +728,27 @@ installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390-5azzDZ/r-bioc-limma-
*** installing help indices
** building package indices
** installing vignettes
- 'limma.Rnw'
** testing if installed package can be loaded
-
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390-5azzDZ/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390-5azzDZ/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390-5azzDZ/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390-zosg9V/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390-zosg9V/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390-zosg9V/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390-5azzDZ/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390-zosg9V/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390-5azzDZ/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390-zosg9V/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/CITATION
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/doc/*
dh_installdocs -pr-bioc-limma
install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390-zosg9V/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/doc/r-bioc-limma \;
+ cp -a debian/README.test debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ chown -R 0:0 debian/r-bioc-limma/usr/share/doc
+ chmod -R go=rX debian/r-bioc-limma/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-limma/usr/share/doc
install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
@@ -786,9 +780,9 @@ dh_strip -pr-bioc-limma
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
cd debian/r-bioc-limma
- chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
- gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
- cd '/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390-5azzDZ/r-bioc-limma-3.12.0~dfsg'
+ chmod a-x usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/changelog.Debian
+ gzip -9nf usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/changelog.Debian
+ cd '/build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390-zosg9V/r-bioc-limma-3.16.3~dfsg'
dh_fixperms -pr-bioc-limma
find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -810,6 +804,7 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
echo misc:Depends= >> debian/r-bioc-limma.substvars
dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-limma.substvars -Pdebian/r-bioc-limma
+dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
chmod 644 debian/r-bioc-limma/DEBIAN/control
chown 0:0 debian/r-bioc-limma/DEBIAN/control
dh_md5sums -pr-bioc-limma
@@ -818,62 +813,79 @@ dh_md5sums -pr-bioc-limma
chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
dpkg-deb --build debian/r-bioc-limma ..
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.12.0~dfsg-1_s390.deb'.
- dpkg-genchanges -B -ms390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../r-bioc-limma_3.12.0~dfsg-1_s390.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.16.3~dfsg-1_s390.deb'.
+ dpkg-genchanges -B -ms390/s390x Build Daemon (zappa) <buildd_s390x-zappa at buildd.debian.org> >../r-bioc-limma_3.16.3~dfsg-1_s390.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.12.0~dfsg
+ dpkg-source --after-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120412-0332
+Build finished at 20130517-1412
-r-bioc-limma_3.12.0~dfsg-1_s390.changes:
+r-bioc-limma_3.16.3~dfsg-1_s390.changes:
Format: 1.8
-Date: Thu, 12 Apr 2012 11:40:40 +0900
+Date: Thu, 16 May 2013 15:16:13 +0200
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: s390
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
Distribution: sid
Urgency: low
-Maintainer: s390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Maintainer: s390/s390x Build Daemon (zappa) <buildd_s390x-zappa at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.12.0~dfsg-1) unstable; urgency=low
+ r-bioc-limma (3.16.3~dfsg-1) unstable; urgency=low
.
[ Charles Plessy ]
- 2d3420e Imported Upstream version 3.12.0~dfsg
- 4bbb8e4 Document LIMMA's copyright as a whole.
+ ff8c6db Imported Upstream version 3.12.1~dfsg
+ b4f097e Effective license is GPL-2, without the '+', as R is GPL-2.
.
[ Andreas Tille ]
- 8a61a4c Obtain references from inst/CITATION
+ * Imported new upstream version 3.16.3~dfsg
+ * debian/control
+ - added myself to Uploaders
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - Fake normalisation as it is done by `cme fix dpkg-control`
+ (the command did actually no change - the control file was
+ brought into shape manually)
+ - Removed versioned dependency of r-base-dev
+ * debian/copyright:
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - checked new upstream version and bumped version number
+ - Add years to Copyright fields
+ * debian/rules: Remove executable flag from doc files
+ * debian/source/format: Add explicit source format specification
Checksums-Sha1:
- ed78bce333ecfef0b3bc851e6f6cda4e6454c0b6 811302 r-bioc-limma_3.12.0~dfsg-1_s390.deb
+ 9478c5291d2fbf647caba75b4896207f0445ed2f 1617016 r-bioc-limma_3.16.3~dfsg-1_s390.deb
Checksums-Sha256:
- 9a68b65c141b45d0f7ded2d1ea94cc5844471c8996eac8eac084de8130f1e5ce 811302 r-bioc-limma_3.12.0~dfsg-1_s390.deb
+ a4b61ca80f9df5ebd3ed52c8348265baabd58fb8db764b394aaa5e105880d39d 1617016 r-bioc-limma_3.16.3~dfsg-1_s390.deb
Files:
- 1aed29a08a42e20b909b8fa0f1335731 811302 gnu-r optional r-bioc-limma_3.12.0~dfsg-1_s390.deb
+ aad3af6304b70f2be5b1b5d6626a5a3a 1617016 gnu-r optional r-bioc-limma_3.16.3~dfsg-1_s390.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.12.0~dfsg-1_s390.deb
+r-bioc-limma_3.16.3~dfsg-1_s390.deb
───────────────────────────────────
new debian package, version 2.0.
- size 811302 bytes: control archive= 1538 bytes.
+ size 1617016 bytes: control archive= 1668 bytes.
774 bytes, 16 lines control
- 2290 bytes, 30 lines md5sums
+ 2621 bytes, 34 lines md5sums
Package: r-bioc-limma
- Version: 3.12.0~dfsg-1
+ Version: 3.16.3~dfsg-1
Architecture: s390
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 983
- Depends: libc6 (>= 2.1.3), r-base-core (>= 2.15.0-1)
+ Installed-Size: 1845
+ Depends: libc6 (>= 2.1.3), r-base-core (>= 3.0.1-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -885,51 +897,56 @@ r-bioc-limma_3.12.0~dfsg-1_s390.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/lib/
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/lib/R/
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 9754 2012-04-12 03:32 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 383 2012-04-12 03:32 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 202046 2012-04-12 03:32 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3828 2012-04-12 03:32 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 1179 2012-04-12 03:32 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 35015 2012-04-12 03:32 ./usr/lib/R/site-library/limma/html/00Index.html
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 8492 2012-04-12 03:32 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1374 2012-04-12 03:32 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 473044 2012-04-12 03:32 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3350 2012-04-12 03:32 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 2431 2012-04-12 03:32 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 6317 2012-04-12 03:32 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 1901 2012-04-12 03:32 ./usr/lib/R/site-library/limma/NAMESPACE
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 1711 2012-04-12 03:32 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rwxr-xr-x root/root 673 2012-04-12 03:32 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 42743 2012-04-12 03:32 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 91993 2012-04-12 03:32 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rw-r--r-- root/root 965 2012-04-12 03:32 ./usr/lib/R/site-library/limma/DESCRIPTION
--rw-r--r-- root/root 3989 2012-04-12 03:32 ./usr/lib/R/site-library/limma/NEWS.Rd
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 521 2012-04-12 03:32 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 220 2012-04-12 03:32 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 5727 2012-04-12 03:32 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2943 2012-04-12 03:32 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 1051 2012-04-12 03:32 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 6157 2012-04-12 03:32 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rwxr-xr-x root/root 1230 2012-04-12 03:32 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/share/
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-04-12 03:32 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 264 2012-04-12 03:32 ./usr/share/doc/r-bioc-limma/README.Debian
--rw-r--r-- root/root 27996 2012-03-30 22:32 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 683 2012-04-12 03:32 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 2457 2012-04-12 03:32 ./usr/share/doc/r-bioc-limma/copyright
+drwxr-xr-x root/root 0 2013-05-17 14:12 ./
+drwxr-xr-x root/root 0 2013-05-17 14:12 ./usr/
+drwxr-xr-x root/root 0 2013-05-17 14:12 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-17 14:12 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-17 14:12 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 1153 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2013-05-17 14:12 ./usr/share/doc/r-bioc-limma/tests/
+-rw-r--r-- root/root 14649 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save.gz
+-rw-r--r-- root/root 2097 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.R.gz
+-rw-r--r-- root/root 437 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.test
+-rw-r--r-- root/root 31097 2013-05-02 00:02 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 264 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 2605 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/copyright
+drwxr-xr-x root/root 0 2013-05-17 14:12 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-17 14:12 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-17 14:12 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-17 14:12 ./usr/lib/R/site-library/limma/
+drwxr-xr-x root/root 0 2013-05-17 14:12 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 6703 2013-05-17 14:12 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 3411 2013-05-17 14:12 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 1405 2013-05-17 14:12 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 2567 2013-05-17 14:12 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 494761 2013-05-17 14:12 ./usr/lib/R/site-library/limma/help/limma.rdb
+drwxr-xr-x root/root 0 2013-05-17 14:12 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8492 2013-05-17 14:12 ./usr/lib/R/site-library/limma/libs/limma.so
+-rw-r--r-- root/root 963 2013-05-17 14:12 ./usr/lib/R/site-library/limma/CITATION
+-rw-r--r-- root/root 11214 2013-05-17 14:12 ./usr/lib/R/site-library/limma/NEWS.Rd
+-rw-r--r-- root/root 986 2013-05-17 14:12 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2013-05-17 14:12 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 6375 2013-05-17 14:12 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5944 2013-05-17 14:12 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 219 2013-05-17 14:12 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 1066 2013-05-17 14:12 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 3089 2013-05-17 14:12 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 541 2013-05-17 14:12 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 10085 2013-05-17 14:12 ./usr/lib/R/site-library/limma/INDEX
+-rw-r--r-- root/root 2046 2013-05-17 14:12 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2013-05-17 14:12 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 1711 2013-05-17 14:12 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 673 2013-05-17 14:12 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 45597 2013-05-17 14:12 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 102936 2013-05-17 14:12 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 806089 2013-05-17 14:12 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+drwxr-xr-x root/root 0 2013-05-17 14:12 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 4115 2013-05-17 14:12 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 206550 2013-05-17 14:12 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 1056 2013-05-17 14:12 ./usr/lib/R/site-library/limma/R/limma
+drwxr-xr-x root/root 0 2013-05-17 14:12 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 37337 2013-05-17 14:12 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2013-05-17 14:12 ./usr/lib/R/site-library/limma/html/R.css
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -943,7 +960,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-s390-sbuild-45d5e6e6-1279-495c-a624-0af01f7d8ade/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390-5azzDZ
+Purging /var/lib/schroot/mount/sid-s390-sbuild-4cad662f-1bf6-4ff2-9c9d-3e4d7f07c617/build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390-zosg9V
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -951,90 +968,84 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: s390
-Build-Space: 3276
-Build-Time: 14
+Build-Space: 5856
+Build-Time: 34
Distribution: sid
-Install-Time: 29
-Job: r-bioc-limma_3.12.0~dfsg-1
+Install-Time: 97
+Job: r-bioc-limma_3.16.3~dfsg-1
Package: r-bioc-limma
-Package-Time: 76
-Source-Version: 3.12.0~dfsg-1
-Space: 3276
+Package-Time: 201
+Source-Version: 3.16.3~dfsg-1
+Space: 5856
Status: successful
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120412-0332
-Build needed 00:01:16, 3276k disc space
-Signature with key 'E7C67939' requested:
-From buildd at zandonai.debian.org Thu Apr 12 03:34:22 2012
+Finished at 20130517-1412
+Build needed 00:03:21, 5856k disc space
+Signature with key '09D4EA98' requested:
+From buildd at zandonai.debian.org Fri May 17 14:14:39 2013
Return-path: <buildd at zandonai.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+Received: from mailly.debian.org ([82.195.75.114])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
- by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ CN=mailly.debian.org, EMAIL=hostmaster at mailly.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:DHE_RSA_AES_128_CBC_SHA1:16)
(Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
- id 1SIAne-0007Eo-LL
- for logs at buildd.debian.org; Thu, 12 Apr 2012 03:34:22 +0000
+ id 1UdLQc-0007RT-Qe
+ for logs at buildd.debian.org; Fri, 17 May 2013 14:14:38 +0000
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- by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
- id 1SIAnd-0003Sl-C1; Thu, 12 Apr 2012 03:34:21 +0000
+ by mailly.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:256)
+ (Exim 4.80) (envelope-from <buildd at zandonai.debian.org>)
+ id 1UdLQc-0002mk-1D; Fri, 17 May 2013 14:14:38 +0000
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- id 1SIAnc-0008Os-HO; Thu, 12 Apr 2012 03:34:20 +0000
-Message-Id: <E1SIAnc-0008Os-HO at zandonai.debian.org>
+ id 1UdLQb-0007zd-LF; Fri, 17 May 2013 14:14:37 +0000
+Message-Id: <E1UdLQb-0007zd-LF at zandonai.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Thu, 12 Apr 2012 03:34:20 +0000
+Date: Fri, 17 May 2013 14:14:37 +0000
From: buildd on zandonai <buildd at zandonai.debian.org>
-To: aurelien at aurel32.net,phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.12.0~dfsg-1 on s390x
+To: phil+buildd at philkern.de,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.16.3~dfsg-1 on s390x
(dist=sid)
-Key-Id: BE1C5586
+Key-Id: 06DAB0BE
Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zandonai.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.12.0~dfsg-1 (s390x) 12 Apr 2012 03:33 ║
+║ r-bioc-limma 3.16.3~dfsg-1 (s390x) 17 May 2013 14:13 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.12.0~dfsg-1
-Source Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
+Source Version: 3.16.3~dfsg-1
Architecture: s390x
-Get:1 http://ftp.de.debian.org unstable InRelease [208 kB]
-Get:2 http://incoming.debian.org unstable InRelease [208 kB]
-Get:3 http://ftp.de.debian.org unstable/main Sources [6216 kB]
-Get:4 http://ftp.de.debian.org unstable/contrib Sources [54.5 kB]
-Get:5 http://ftp.de.debian.org unstable/non-free Sources [97.8 kB]
-Get:6 http://ftp.de.debian.org unstable/main s390x Packages [5689 kB]
-Ign http://incoming.debian.org InRelease
-Get:7 http://ftp.de.debian.org unstable/contrib s390x Packages [36.3 kB]
-Get:8 http://incoming.debian.org Release.gpg [836 B]
-Ign http://ftp.de.debian.org unstable/contrib TranslationIndex
-Get:9 http://ftp.de.debian.org unstable/main TranslationIndex [2223 B]
-Get:10 http://ftp.de.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:11 http://ftp.de.debian.org unstable/main Translation-en [3936 kB]
-Get:12 http://incoming.debian.org unstable/main Sources [6221 kB]
-Get:13 http://incoming.debian.org unstable/contrib Sources [54.5 kB]
-Get:14 http://incoming.debian.org unstable/non-free Sources [97.7 kB]
-Get:15 http://incoming.debian.org unstable/main s390x Packages [5706 kB]
-Get:16 http://incoming.debian.org unstable/contrib s390x Packages [36.3 kB]
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:17 http://incoming.debian.org unstable/main TranslationIndex [2223 B]
-Get:18 http://incoming.debian.org Release [1601 B]
-Get:19 http://incoming.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:20 http://incoming.debian.org unstable/main Translation-en [3936 kB]
-Get:21 http://incoming.debian.org Sources [42.9 kB]
-Get:22 http://incoming.debian.org Packages [682 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 33.3 MB in 12s (2752 kB/s)
+Get:1 http://ftp.de.debian.org unstable Release.gpg [1571 B]
+Get:2 http://ftp.de.debian.org unstable Release [203 kB]
+Get:3 http://incoming.debian.org unstable Release.gpg [1571 B]
+Get:4 http://ftp.de.debian.org unstable/main Sources [6729 kB]
+Get:5 http://incoming.debian.org buildd-unstable Release.gpg [1571 B]
+Get:6 http://incoming.debian.org unstable Release [203 kB]
+Get:7 http://incoming.debian.org buildd-unstable Release [109 kB]
+Get:8 http://incoming.debian.org unstable/main Sources [6729 kB]
+Get:9 http://ftp.de.debian.org unstable/contrib Sources [53.7 kB]
+Get:10 http://ftp.de.debian.org unstable/non-free Sources [103 kB]
+Get:11 http://ftp.de.debian.org unstable/main s390x Packages [6147 kB]
+Get:12 http://ftp.de.debian.org unstable/contrib s390x Packages [36.6 kB]
+Get:13 http://incoming.debian.org unstable/contrib Sources [53.7 kB]
+Get:14 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:15 http://incoming.debian.org unstable/main s390x Packages [6147 kB]
+Get:16 http://incoming.debian.org unstable/contrib s390x Packages [36.6 kB]
+Get:17 http://incoming.debian.org buildd-unstable/main Sources [104 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib Sources [873 B]
+Get:19 http://incoming.debian.org buildd-unstable/non-free Sources [2683 B]
+Get:20 http://incoming.debian.org buildd-unstable/main s390x Packages [40.4 kB]
+Get:21 http://incoming.debian.org buildd-unstable/contrib s390x Packages [14 B]
+Fetched 26.8 MB in 24s (1087 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -1055,11 +1066,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 288 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (dsc) [2030 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (tar) [283 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (diff) [3098 B]
-Fetched 288 kB in 0s (307 kB/s)
+Need to get 1058 kB of source archives.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (dsc) [1409 B]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (tar) [1052 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (diff) [4167 B]
+Fetched 1058 kB in 0s (2670 kB/s)
Download complete and in download only mode
Check arch
@@ -1072,493 +1083,545 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
-build-essential: already installed (11.5+b1)
-fakeroot: already installed (1.18.2-1)
+build-essential: already installed (11.6)
+fakeroot: already installed (1.18.4-2)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 27 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 38 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 27 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 38 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev
Checking for already installed dependencies...
-libc6-dev: already installed (2.13-27)
-gcc: already installed (4:4.6.3-3 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-3 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1+b1)
-dpkg-dev: already installed (1.16.2 >= 1.13.5 is satisfied)
+base-files: already installed (7.1)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2+dfsg-1)
+bsdutils: already installed (1:2.20.1-5.3)
+coreutils: already installed (8.20-3)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1.1)
+findutils: already installed (4.4.2-5)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+libc-bin: already installed (2.13-38)
+login: already installed (1:4.1.5.1-1)
+mount: already installed (2.20.1-5.3)
+ncurses-base: already installed (5.9-10)
+ncurses-bin: already installed (5.9-10)
+perl-base: already installed (5.14.2-21)
+sed: already installed (4.2.1-10)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-5)
+util-linux: already installed (2.20.1-5.3)
+libc6-dev: already installed (2.13-38)
+gcc: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120410
+Using default version 9.20130516
cdbs: missing
r-base-dev: missing
-Using default version 2.15.0-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils cpp cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
- gcc gcc-4.6 gcc-4.6-base gcc-4.7-base gettext gettext-base gfortran
- gfortran-4.6 groff-base html2text intltool-debian libblas-dev libblas3gf
- libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1
- libfreetype6 libgcc1 libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5
+ bsdmainutils cpp-4.6 file fontconfig fontconfig-config fonts-dejavu-core
+ g++-4.6 gcc-4.6 gcc-4.6-base gcc-4.8-base gettext gettext-base gfortran
+ gfortran-4.6 groff-base html2text intltool-debian libasprintf-dev
+ libasprintf0c2 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6 libc6-dev
+ libcairo2 libcroco3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6
+ libgettextpo-dev libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libmpc3 libncurses5
libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev
libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
- libreadline-dev libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev
- libthai-data libthai0 libtiff4 libtinfo-dev libtinfo5 libunistring0 libx11-6
- libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
- libxft2 libxml2 libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf
- r-base-core tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common xdg-utils zip
+ libreadline-dev libreadline6-dev libsm6 libstdc++6-4.6-dev libthai-data
+ libthai0 libtiff5 libtinfo-dev libtinfo5 libunistring0 libx11-6 libx11-data
+ libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
+ libxml2 libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf r-base-core
+ tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g
zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts cpp-doc gcc-4.6-locales dh-make
- curl defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-multilib
- manpages-dev autoconf automake1.9 libtool flex bison gdb gcc-doc
- gcc-4.6-multilib libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg
- libquadmath-dbg libmudflap0-dbg gettext-doc gfortran-multilib gfortran-doc
- gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
- ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
- r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
- texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
- texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
- texi2html tclreadline gvfs-bin
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make
+ g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ libcloog-ppl0 libppl-c2 libppl7 gettext-doc gfortran-multilib gfortran-doc
+ gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff glibc-doc
+ ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp
+ ttf-arphic-gkai00mp ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base
+ texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
+ texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
+ texlive-latex-extra texinfo texi2html tcl-tclreadline gvfs-bin
Recommended packages:
- autotools-dev patchutils autopoint libglib2.0-data shared-mime-info libgpm2
- xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
- x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ autotools-dev curl wget lynx-cur autopoint manpages-dev libglib2.0-data
+ shared-mime-info libgpm2 xml-core libmail-sendmail-perl r-recommended
+ r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
- bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
- libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libffi5 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
- libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
- libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
- po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core unzip
- x11-common xdg-utils zip zlib1g-dev
+ bsdmainutils cdbs debhelper file fontconfig fontconfig-config
+ fonts-dejavu-core gcc-4.8-base gettext gettext-base gfortran gfortran-4.6
+ groff-base html2text intltool-debian libasprintf-dev libasprintf0c2
+ libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libffi6 libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0
+ libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3 libmagic1 libmpc3 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 libx11-6
+ libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
+ libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
+ r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+ zlib1g-dev
The following packages will be upgraded:
- cpp cpp-4.6 g++-4.6 gcc gcc-4.6 gcc-4.6-base gcc-4.7-base libgcc1 libgomp1
- libncurses5 libstdc++6 libstdc++6-4.6-dev libtinfo5 ncurses-bin
-14 upgraded, 76 newly installed, 0 to remove and 13 not upgraded.
-Need to get 75.2 MB of archives.
-After this operation, 127 MB of additional disk space will be used.
-Get:1 http://ftp.de.debian.org/debian/ unstable/main ncurses-bin s390x 5.9-6 [336 kB]
-Get:2 http://ftp.de.debian.org/debian/ unstable/main libgomp1 s390x 4.7.0-3 [29.8 kB]
-Get:3 http://ftp.de.debian.org/debian/ unstable/main gcc-4.7-base s390x 4.7.0-3 [139 kB]
-Get:4 http://ftp.de.debian.org/debian/ unstable/main libstdc++6 s390x 4.7.0-3 [379 kB]
-Get:5 http://ftp.de.debian.org/debian/ unstable/main libgcc1 s390x 1:4.7.0-3 [31.0 kB]
-Get:6 http://ftp.de.debian.org/debian/ unstable/main libtinfo5 s390x 5.9-6 [280 kB]
-Get:7 http://ftp.de.debian.org/debian/ unstable/main libncurses5 s390x 5.9-6 [304 kB]
-Get:8 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390x 1.2.1-1 [40.5 kB]
-Get:9 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390x 5.11-1 [256 kB]
-Get:10 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390x 1:8.30-4 [253 kB]
-Get:11 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390x 2.1.0-1 [144 kB]
-Get:12 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 s390x 2.4.9-1 [465 kB]
-Get:13 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:14 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3.1 [219 kB]
-Get:15 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 s390x 2.8.0-3.1 [285 kB]
-Get:16 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 s390x 0.24.4-1 [348 kB]
-Get:17 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 s390x 1.2.49-1 [193 kB]
-Get:18 http://ftp.de.debian.org/debian/ unstable/main libxau6 s390x 1:1.0.7-1 [18.6 kB]
-Get:19 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 s390x 1:1.1.0-4 [23.5 kB]
-Get:20 http://ftp.de.debian.org/debian/ unstable/main libxcb1 s390x 1.8.1-1 [52.7 kB]
-Get:21 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-4 [187 kB]
-Get:22 http://ftp.de.debian.org/debian/ unstable/main libx11-6 s390x 2:1.4.4-4 [907 kB]
-Get:23 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 s390x 1.8.1-1 [19.0 kB]
-Get:24 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 s390x 1.8.1-1 [10.2 kB]
-Get:25 http://ftp.de.debian.org/debian/ unstable/main libxrender1 s390x 1:0.9.6-2 [32.9 kB]
-Get:26 http://ftp.de.debian.org/debian/ unstable/main libcairo2 s390x 1.12.0-2 [895 kB]
-Get:27 http://ftp.de.debian.org/debian/ unstable/main libffi5 s390x 3.0.10-3+b1 [26.2 kB]
-Get:28 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390x 2.32.0-4 [2084 kB]
-Get:29 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390x 2.7.8.dfsg-7 [894 kB]
-Get:30 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390x 0.6.5-1 [151 kB]
-Get:31 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 s390x 0.2.5-3 [29.7 kB]
-Get:32 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 s390x 4.7.0-3 [358 kB]
-Get:33 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.6+12 [283 kB]
-Get:34 http://ftp.de.debian.org/debian/ unstable/main libice6 s390x 2:1.0.8-2 [65.6 kB]
-Get:35 http://ftp.de.debian.org/debian/ unstable/main libjpeg8 s390x 8d-1 [190 kB]
-Get:36 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.17-1 [205 kB]
-Get:37 http://ftp.de.debian.org/debian/ unstable/main libthai0 s390x 0.1.17-1 [46.6 kB]
-Get:38 http://ftp.de.debian.org/debian/ unstable/main libxft2 s390x 2.2.0-3 [61.0 kB]
-Get:39 http://ftp.de.debian.org/debian/ unstable/main fontconfig s390x 2.8.0-3.1 [337 kB]
-Get:40 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 s390x 1.30.0-1 [473 kB]
-Get:41 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 s390x 1:8.30-4 [126 kB]
-Get:42 http://ftp.de.debian.org/debian/ unstable/main libsm6 s390x 2:1.2.1-2 [34.9 kB]
-Get:43 http://ftp.de.debian.org/debian/ unstable/main libtiff4 s390x 3.9.6-2 [211 kB]
-Get:44 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390x 0.9.3-5+b1 [442 kB]
-Get:45 http://ftp.de.debian.org/debian/ unstable/main libxext6 s390x 2:1.3.0-3 [53.8 kB]
-Get:46 http://ftp.de.debian.org/debian/ unstable/main libxss1 s390x 1:1.2.1-2 [16.9 kB]
-Get:47 http://ftp.de.debian.org/debian/ unstable/main libxt6 s390x 1:1.1.1-2 [213 kB]
-Get:48 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390x 9.0.1 [214 kB]
-Get:49 http://ftp.de.debian.org/debian/ unstable/main groff-base s390x 1.21-7 [1187 kB]
-Get:50 http://ftp.de.debian.org/debian/ unstable/main man-db s390x 2.6.1-2 [1070 kB]
-Get:51 http://ftp.de.debian.org/debian/ unstable/main g++-4.6 s390x 4.6.3-3 [5558 kB]
-Get:52 http://ftp.de.debian.org/debian/ unstable/main libstdc++6-4.6-dev s390x 4.6.3-3 [1719 kB]
-Get:53 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6 s390x 4.6.3-3 [4358 kB]
-Get:54 http://ftp.de.debian.org/debian/ unstable/main cpp-4.6 s390x 4.6.3-3 [4048 kB]
-Get:55 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6-base s390x 4.6.3-3 [140 kB]
-Get:56 http://ftp.de.debian.org/debian/ unstable/main file s390x 5.11-1 [53.9 kB]
-Get:57 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390x 0.18.1.1-5+b1 [157 kB]
-Get:58 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.109 [79.4 kB]
-Get:59 http://ftp.de.debian.org/debian/ unstable/main cpp s390x 4:4.6.3-4 [16.3 kB]
-Get:60 http://ftp.de.debian.org/debian/ unstable/main html2text s390x 1.3.2a-15+b1 [111 kB]
-Get:61 http://ftp.de.debian.org/debian/ unstable/main gettext s390x 0.18.1.1-5+b1 [2163 kB]
-Get:62 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:63 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:64 http://ftp.de.debian.org/debian/ unstable/main debhelper all 9.20120410 [694 kB]
-Get:65 http://ftp.de.debian.org/debian/ unstable/main dpatch all 2.0.35 [95.2 kB]
-Get:66 http://ftp.de.debian.org/debian/ unstable/main gcc s390x 4:4.6.3-4 [5038 B]
-Get:67 http://ftp.de.debian.org/debian/ unstable/main gfortran-4.6 s390x 4.6.3-3 [4789 kB]
-Get:68 http://ftp.de.debian.org/debian/ unstable/main gfortran s390x 4:4.6.3-4 [1132 B]
-Get:69 http://ftp.de.debian.org/debian/ unstable/main libblas3gf s390x 1.2.20110419-2 [221 kB]
-Get:70 http://ftp.de.debian.org/debian/ unstable/main libblas-dev s390x 1.2.20110419-2 [230 kB]
-Get:71 http://ftp.de.debian.org/debian/ unstable/main libbz2-dev s390x 1.0.6-1 [38.8 kB]
-Get:72 http://ftp.de.debian.org/debian/ unstable/main libjpeg8-dev s390x 8d-1 [297 kB]
-Get:73 http://ftp.de.debian.org/debian/ unstable/main liblapack3gf s390x 3.3.1-1 [4037 kB]
-Get:74 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev s390x 3.3.1-1 [4296 kB]
-Get:75 http://ftp.de.debian.org/debian/ unstable/main libtinfo-dev s390x 5.9-6 [121 kB]
-Get:76 http://ftp.de.debian.org/debian/ unstable/main libncurses5-dev s390x 5.9-6 [414 kB]
-Get:77 http://ftp.de.debian.org/debian/ unstable/main libpaper1 s390x 1.1.24+nmu1 [21.9 kB]
-Get:78 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils s390x 1.1.24+nmu1 [18.3 kB]
-Get:79 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev s390x 1:8.30-4 [359 kB]
-Get:80 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390x 1:1.2.6.dfsg-2 [217 kB]
-Get:81 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev s390x 1.2.49-1 [273 kB]
-Get:82 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev s390x 6.2-8+b1 [272 kB]
-Get:83 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev s390x 6.2-8+b1 [898 B]
-Get:84 http://ftp.de.debian.org/debian/ unstable/main zip s390x 3.0-4 [349 kB]
-Get:85 http://ftp.de.debian.org/debian/ unstable/main unzip s390x 6.0-6 [203 kB]
-Get:86 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB]
-Get:87 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 s390x 8.5.11-1 [1652 kB]
-Get:88 http://ftp.de.debian.org/debian/ unstable/main tk8.5 s390x 8.5.11-1 [1224 kB]
-Get:89 http://ftp.de.debian.org/debian/ unstable/main r-base-core s390x 2.15.0-1 [20.5 MB]
-Get:90 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 2.15.0-1 [3900 B]
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libc-dev-bin libc6 libc6-dev
+ libncurses5 libstdc++6-4.6-dev libtinfo5 ncurses-bin zlib1g
+12 upgraded, 84 newly installed, 0 to remove and 26 not upgraded.
+Need to get 82.5 MB of archives.
+After this operation, 130 MB of additional disk space will be used.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main libtinfo5 s390x 5.9+20130504-1 [301 kB]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main libncurses5 s390x 5.9+20130504-1 [121 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main ncurses-bin s390x 5.9+20130504-1 [366 kB]
+Get:4 http://incoming.debian.org/debian-buildd/ buildd-unstable/main libc6-dev s390x 2.17-3 [2955 kB]
+Get:5 http://ftp.de.debian.org/debian/ unstable/main zlib1g s390x 1:1.2.8.dfsg-1 [94.1 kB]
+Get:6 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390x 1.2.3-1 [41.6 kB]
+Get:7 http://ftp.de.debian.org/debian/ unstable/main groff-base s390x 1.22.2-2 [738 kB]
+Get:8 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390x 9.0.5 [216 kB]
+Get:9 http://ftp.de.debian.org/debian/ unstable/main man-db s390x 2.6.3-6 [888 kB]
+Get:10 http://ftp.de.debian.org/debian/ unstable/main libasprintf0c2 s390x 0.18.1.1-10 [27.2 kB]
+Get:11 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390x 1:5.14-1 [214 kB]
+Get:12 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390x 1:8.31-2 [259 kB]
+Get:13 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390x 2.8.0+dfsg1-7+nmu1 [902 kB]
+Get:14 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390x 2.1.0-3 [145 kB]
+Get:15 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 s390x 2.4.9-1.1 [465 kB]
+Get:16 http://ftp.de.debian.org/debian/ unstable/main ucf all 3.0025+nmu3 [70.8 kB]
+Get:17 http://ftp.de.debian.org/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
+Get:18 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
+Get:19 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:20 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 s390x 2.9.0-7.1 [302 kB]
+Get:21 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 s390x 0.26.0-4 [368 kB]
+Get:22 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 s390x 1.2.49-4 [193 kB]
+Get:23 http://ftp.de.debian.org/debian/ unstable/main libxau6 s390x 1:1.0.7-1 [18.6 kB]
+Get:24 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 s390x 1:1.1.1-1 [26.5 kB]
+Get:25 http://ftp.de.debian.org/debian/ unstable/main libxcb1 s390x 1.8.1-2 [53.1 kB]
+Get:26 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:27 http://ftp.de.debian.org/debian/ unstable/main libx11-6 s390x 2:1.5.0-1 [917 kB]
+Get:28 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 s390x 1.8.1-2 [19.2 kB]
+Get:29 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 s390x 1.8.1-2 [10.4 kB]
+Get:30 http://ftp.de.debian.org/debian/ unstable/main libxext6 s390x 2:1.3.1-2 [56.8 kB]
+Get:31 http://ftp.de.debian.org/debian/ unstable/main libxrender1 s390x 1:0.9.7-1 [33.6 kB]
+Get:32 http://ftp.de.debian.org/debian/ unstable/main libcairo2 s390x 1.12.14-4 [1008 kB]
+Get:33 http://ftp.de.debian.org/debian/ unstable/main libffi6 s390x 3.0.13-4 [21.6 kB]
+Get:34 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390x 2.36.1-2build1 [2010 kB]
+Get:35 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 s390x 0.2.6-2 [30.6 kB]
+Get:36 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390x 0.9.3-5+b1 [442 kB]
+Get:37 http://ftp.de.debian.org/debian/ unstable/main libgettextpo0 s390x 0.18.1.1-10 [158 kB]
+Get:38 http://ftp.de.debian.org/debian/ unstable/main gcc-4.8-base s390x 4.8.0-7 [148 kB]
+Get:39 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 s390x 4.8.0-7 [359 kB]
+Get:40 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.7+3 [284 kB]
+Get:41 http://ftp.de.debian.org/debian/ unstable/main libice6 s390x 2:1.0.8-2 [65.6 kB]
+Get:42 http://ftp.de.debian.org/debian/ unstable/main libjpeg8 s390x 8d-1 [190 kB]
+Get:43 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.19-2 [156 kB]
+Get:44 http://ftp.de.debian.org/debian/ unstable/main libthai0 s390x 0.1.19-2 [44.0 kB]
+Get:45 http://ftp.de.debian.org/debian/ unstable/main libxft2 s390x 2.3.1-1 [63.6 kB]
+Get:46 http://ftp.de.debian.org/debian/ unstable/main fontconfig s390x 2.9.0-7.1 [351 kB]
+Get:47 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 s390x 1.30.0-1 [473 kB]
+Get:48 http://ftp.de.debian.org/debian/ unstable/main libpaper1 s390x 1.1.24+nmu2 [22.0 kB]
+Get:49 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 s390x 1:8.31-2 [128 kB]
+Get:50 http://ftp.de.debian.org/debian/ unstable/main libsm6 s390x 2:1.2.1-2 [34.9 kB]
+Get:51 http://ftp.de.debian.org/debian/ unstable/main libjbig0 s390x 2.0-2 [35.7 kB]
+Get:52 http://ftp.de.debian.org/debian/ unstable/main libtiff5 s390x 4.0.2-6 [245 kB]
+Get:53 http://ftp.de.debian.org/debian/ unstable/main libxss1 s390x 1:1.2.2-1 [17.5 kB]
+Get:54 http://ftp.de.debian.org/debian/ unstable/main libxt6 s390x 1:1.1.3-1 [216 kB]
+Get:55 http://ftp.de.debian.org/debian/ unstable/main libmpc3 s390x 1.0.1-1 [45.1 kB]
+Get:56 http://ftp.de.debian.org/debian/ unstable/main file s390x 1:5.14-1 [54.4 kB]
+Get:57 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390x 0.18.1.1-10 [156 kB]
+Get:58 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.121 [80.5 kB]
+Get:59 http://ftp.de.debian.org/debian/ unstable/main libstdc++6-4.6-dev s390x 4.6.4-2 [1704 kB]
+Get:60 http://ftp.de.debian.org/debian/ unstable/main g++-4.6 s390x 4.6.4-2 [5467 kB]
+Get:61 http://incoming.debian.org/debian-buildd/ buildd-unstable/main libc-dev-bin s390x 2.17-3 [234 kB]
+Get:62 http://incoming.debian.org/debian-buildd/ buildd-unstable/main libc6 s390x 2.17-3 [4602 kB]
+Get:63 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6 s390x 4.6.4-2 [4278 kB]
+Get:64 http://ftp.de.debian.org/debian/ unstable/main cpp-4.6 s390x 4.6.4-2 [3957 kB]
+Get:65 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6-base s390x 4.6.4-2 [142 kB]
+Get:66 http://ftp.de.debian.org/debian/ unstable/main html2text s390x 1.3.2a-15+b1 [111 kB]
+Get:67 http://ftp.de.debian.org/debian/ unstable/main libasprintf-dev s390x 0.18.1.1-10 [26.8 kB]
+Get:68 http://ftp.de.debian.org/debian/ unstable/main libgettextpo-dev s390x 0.18.1.1-10 [195 kB]
+Get:69 http://ftp.de.debian.org/debian/ unstable/main gettext s390x 0.18.1.1-10 [1864 kB]
+Get:70 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:71 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:72 http://ftp.de.debian.org/debian/ unstable/main debhelper all 9.20130516 [708 kB]
+Get:73 http://ftp.de.debian.org/debian/ unstable/main gfortran-4.6 s390x 4.6.4-2 [4699 kB]
+Get:74 http://ftp.de.debian.org/debian/ unstable/main gfortran s390x 4:4.6.3-8 [1132 B]
+Get:75 http://ftp.de.debian.org/debian/ unstable/main libblas3 s390x 1.2.20110419-5 [218 kB]
+Get:76 http://ftp.de.debian.org/debian/ unstable/main libblas-dev s390x 1.2.20110419-5 [227 kB]
+Get:77 http://ftp.de.debian.org/debian/ unstable/main libbz2-dev s390x 1.0.6-4 [39.1 kB]
+Get:78 http://ftp.de.debian.org/debian/ unstable/main libjpeg8-dev s390x 8d-1 [297 kB]
+Get:79 http://ftp.de.debian.org/debian/ unstable/main liblapack3 s390x 3.4.2+dfsg-1 [4152 kB]
+Get:80 http://incoming.debian.org/debian-buildd/ buildd-unstable/main libcroco3 s390x 0.6.8-2 [130 kB]
+Get:81 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev s390x 3.4.2+dfsg-1 [4555 kB]
+Get:82 http://ftp.de.debian.org/debian/ unstable/main libtinfo-dev s390x 5.9+20130504-1 [125 kB]
+Get:83 http://ftp.de.debian.org/debian/ unstable/main libncurses5-dev s390x 5.9+20130504-1 [233 kB]
+Get:84 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils s390x 1.1.24+nmu2 [18.5 kB]
+Get:85 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev s390x 1:8.31-2 [365 kB]
+Get:86 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390x 1:1.2.8.dfsg-1 [221 kB]
+Get:87 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev s390x 1.2.49-4 [273 kB]
+Get:88 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev s390x 6.2+dfsg-0.1 [200 kB]
+Get:89 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev s390x 6.2+dfsg-0.1 [898 B]
+Get:90 http://ftp.de.debian.org/debian/ unstable/main zip s390x 3.0-7 [354 kB]
+Get:91 http://ftp.de.debian.org/debian/ unstable/main unzip s390x 6.0-9 [204 kB]
+Get:92 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:93 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 s390x 8.5.11-2 [1657 kB]
+Get:94 http://ftp.de.debian.org/debian/ unstable/main tk8.5 s390x 8.5.11-2 [1229 kB]
+Get:95 http://ftp.de.debian.org/debian/ unstable/main r-base-core s390x 3.0.1-1 [21.6 MB]
+Get:96 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 3.0.1-1 [3896 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 75.2 MB in 7s (10.4 MB/s)
-(Reading database ... 10853 files and directories currently installed.)
-Preparing to replace ncurses-bin 5.9-5 (using .../ncurses-bin_5.9-6_s390x.deb) ...
-Unpacking replacement ncurses-bin ...
-Setting up ncurses-bin (5.9-6) ...
-(Reading database ... 10853 files and directories currently installed.)
-Preparing to replace libgomp1:s390x 4.7.0-1 (using .../libgomp1_4.7.0-3_s390x.deb) ...
-Unpacking replacement libgomp1:s390x ...
-Preparing to replace gcc-4.7-base:s390x 4.7.0-1 (using .../gcc-4.7-base_4.7.0-3_s390x.deb) ...
-Unpacking replacement gcc-4.7-base:s390x ...
-Setting up gcc-4.7-base:s390x (4.7.0-3) ...
-(Reading database ... 10853 files and directories currently installed.)
-Preparing to replace libstdc++6:s390x 4.7.0-1 (using .../libstdc++6_4.7.0-3_s390x.deb) ...
-Unpacking replacement libstdc++6:s390x ...
-Setting up libstdc++6:s390x (4.7.0-3) ...
-(Reading database ... 10853 files and directories currently installed.)
-Preparing to replace libgcc1:s390x 1:4.7.0-1 (using .../libgcc1_1%3a4.7.0-3_s390x.deb) ...
-Unpacking replacement libgcc1:s390x ...
-Setting up libgcc1:s390x (1:4.7.0-3) ...
-(Reading database ... 10853 files and directories currently installed.)
-Preparing to replace libtinfo5:s390x 5.9-5 (using .../libtinfo5_5.9-6_s390x.deb) ...
+Fetched 82.5 MB in 23s (3479 kB/s)
+(Reading database ... 10877 files and directories currently installed.)
+Preparing to replace libc6-dev:s390x 2.13-38 (using .../libc6-dev_2.17-3_s390x.deb) ...
+Unpacking replacement libc6-dev:s390x ...
+Preparing to replace libc-dev-bin 2.13-38 (using .../libc-dev-bin_2.17-3_s390x.deb) ...
+Unpacking replacement libc-dev-bin ...
+Preparing to replace libc6:s390x 2.13-38 (using .../libc6_2.17-3_s390x.deb) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Unpacking replacement libc6:s390x ...
+Setting up libc6:s390x (2.17-3) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Nothing to restart.
+(Reading database ... 10899 files and directories currently installed.)
+Preparing to replace libtinfo5:s390x 5.9-10 (using .../libtinfo5_5.9+20130504-1_s390x.deb) ...
Unpacking replacement libtinfo5:s390x ...
-Setting up libtinfo5:s390x (5.9-6) ...
-(Reading database ... 10853 files and directories currently installed.)
-Preparing to replace libncurses5:s390x 5.9-5 (using .../libncurses5_5.9-6_s390x.deb) ...
+Setting up libtinfo5:s390x (5.9+20130504-1) ...
+(Reading database ... 10899 files and directories currently installed.)
+Preparing to replace libncurses5:s390x 5.9-10 (using .../libncurses5_5.9+20130504-1_s390x.deb) ...
Unpacking replacement libncurses5:s390x ...
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+Setting up libncurses5:s390x (5.9+20130504-1) ...
+(Reading database ... 10899 files and directories currently installed.)
+Preparing to replace ncurses-bin 5.9-10 (using .../ncurses-bin_5.9+20130504-1_s390x.deb) ...
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+Setting up ncurses-bin (5.9+20130504-1) ...
+(Reading database ... 10897 files and directories currently installed.)
+Preparing to replace zlib1g:s390x 1:1.2.7.dfsg-13 (using .../zlib1g_1%3a1.2.8.dfsg-1_s390x.deb) ...
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+Setting up zlib1g:s390x (1:1.2.8.dfsg-1) ...
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+Unpacking groff-base (from .../groff-base_1.22.2-2_s390x.deb) ...
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+Unpacking libxt6:s390x (from .../libxt6_1%3a1.1.3-1_s390x.deb) ...
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+Preparing to replace libstdc++6-4.6-dev 4.6.3-15 (using .../libstdc++6-4.6-dev_4.6.4-2_s390x.deb) ...
Unpacking replacement libstdc++6-4.6-dev ...
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+Preparing to replace gcc-4.6 4.6.3-15 (using .../gcc-4.6_4.6.4-2_s390x.deb) ...
Unpacking replacement gcc-4.6 ...
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+Preparing to replace cpp-4.6 4.6.3-15 (using .../cpp-4.6_4.6.4-2_s390x.deb) ...
Unpacking replacement cpp-4.6 ...
-Preparing to replace gcc-4.6-base:s390x 4.6.3-1 (using .../gcc-4.6-base_4.6.3-3_s390x.deb) ...
+Preparing to replace gcc-4.6-base:s390x 4.6.3-15 (using .../gcc-4.6-base_4.6.4-2_s390x.deb) ...
Unpacking replacement gcc-4.6-base:s390x ...
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+Selecting previously unselected package libasprintf-dev:s390x.
+Unpacking libasprintf-dev:s390x (from .../libasprintf-dev_0.18.1.1-10_s390x.deb) ...
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-Removing old gcc doc directory.
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+Unpacking debhelper (from .../debhelper_9.20130516_all.deb) ...
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+Unpacking gfortran (from .../gfortran_4%3a4.6.3-8_s390x.deb) ...
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+Unpacking libtinfo-dev:s390x (from .../libtinfo-dev_5.9+20130504-1_s390x.deb) ...
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+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_s390x.deb) ...
Selecting previously unselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.11-1_s390x.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_s390x.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.15.0-1_s390x.deb) ...
+Unpacking r-base-core (from .../r-base-core_3.0.1-1_s390x.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.15.0-1_all.deb) ...
-Setting up libgomp1:s390x (4.7.0-3) ...
-Setting up libpipeline1:s390x (1.2.1-1) ...
-Setting up libmagic1:s390x (5.11-1) ...
-Setting up libpcre3:s390x (1:8.30-4) ...
-Setting up libexpat1:s390x (2.1.0-1) ...
-Setting up libfreetype6:s390x (2.4.9-1) ...
-Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3.1) ...
-Setting up libfontconfig1:s390x (2.8.0-3.1) ...
-Setting up libpixman-1-0:s390x (0.24.4-1) ...
-Setting up libpng12-0:s390x (1.2.49-1) ...
+Unpacking r-base-dev (from .../r-base-dev_3.0.1-1_all.deb) ...
+Setting up libc-dev-bin (2.17-3) ...
+Setting up libc6-dev:s390x (2.17-3) ...
+Setting up libpipeline1:s390x (1.2.3-1) ...
+Setting up groff-base (1.22.2-2) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.3-6) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:s390x (0.18.1.1-10) ...
+Setting up libmagic1:s390x (1:5.14-1) ...
+Setting up libpcre3:s390x (1:8.31-2) ...
+Setting up libxml2:s390x (2.8.0+dfsg1-7+nmu1) ...
+Setting up libexpat1:s390x (2.1.0-3) ...
+Setting up libfreetype6:s390x (2.4.9-1.1) ...
+Setting up ucf (3.0025+nmu3) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:s390x (2.9.0-7.1) ...
+Setting up libpixman-1-0:s390x (0.26.0-4) ...
+Setting up libpng12-0:s390x (1.2.49-4) ...
Setting up libxau6:s390x (1:1.0.7-1) ...
-Setting up libxdmcp6:s390x (1:1.1.0-4) ...
-Setting up libxcb1:s390x (1.8.1-1) ...
-Setting up libx11-data (2:1.4.4-4) ...
-Setting up libx11-6:s390x (2:1.4.4-4) ...
-Setting up libxcb-render0:s390x (1.8.1-1) ...
-Setting up libxcb-shm0:s390x (1.8.1-1) ...
-Setting up libxrender1:s390x (1:0.9.6-2) ...
-Setting up libcairo2:s390x (1.12.0-2) ...
-Setting up libffi5:s390x (3.0.10-3+b1) ...
-Setting up libglib2.0-0:s390x (2.32.0-4) ...
+Setting up libxdmcp6:s390x (1:1.1.1-1) ...
+Setting up libxcb1:s390x (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:s390x (2:1.5.0-1) ...
+Setting up libxcb-render0:s390x (1.8.1-2) ...
+Setting up libxcb-shm0:s390x (1.8.1-2) ...
+Setting up libxext6:s390x (2:1.3.1-2) ...
+Setting up libxrender1:s390x (1:0.9.7-1) ...
+Setting up libcairo2:s390x (1.12.14-4) ...
+Setting up libffi6:s390x (3.0.13-4) ...
+Setting up libglib2.0-0:s390x (2.36.1-2build1) ...
No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-7) ...
-Setting up libcroco3:s390x (0.6.5-1) ...
-Setting up libdatrie1:s390x (0.2.5-3) ...
-Setting up libgfortran3:s390x (4.7.0-3) ...
-Setting up x11-common (1:7.6+12) ...
+Setting up libcroco3:s390x (0.6.8-2) ...
+Setting up libdatrie1:s390x (0.2.6-2) ...
+Setting up libunistring0:s390x (0.9.3-5+b1) ...
+Setting up libgettextpo0:s390x (0.18.1.1-10) ...
+Setting up gcc-4.8-base:s390x (4.8.0-7) ...
+Setting up libgfortran3:s390x (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6:s390x (2:1.0.8-2) ...
Setting up libjpeg8:s390x (8d-1) ...
-Setting up libthai-data (0.1.17-1) ...
-Setting up libthai0:s390x (0.1.17-1) ...
-Setting up libxft2:s390x (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3.1) ...
-Cleaning up old fontconfig caches... done.
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:s390x (0.1.19-2) ...
+Setting up libxft2:s390x (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
Regenerating fonts cache... done.
Setting up libpango1.0-0:s390x (1.30.0-1) ...
-Setting up libpcrecpp0:s390x (1:8.30-4) ...
+Setting up libpaper1:s390x (1.1.24+nmu2) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpcrecpp0:s390x (1:8.31-2) ...
Setting up libsm6:s390x (2:1.2.1-2) ...
-Setting up libtiff4:s390x (3.9.6-2) ...
-Setting up libunistring0:s390x (0.9.3-5+b1) ...
-Setting up libxext6:s390x (2:1.3.0-3) ...
-Setting up libxss1:s390x (1:1.2.1-2) ...
-Setting up libxt6:s390x (1:1.1.1-2) ...
-Setting up bsdmainutils (9.0.1) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
-Building database of manual pages ...
-Setting up gcc-4.6-base:s390x (4.6.3-3) ...
-Setting up cpp-4.6 (4.6.3-3) ...
-Setting up gcc-4.6 (4.6.3-3) ...
-Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-5+b1) ...
-Setting up cdbs (0.4.109) ...
-Setting up cpp (4:4.6.3-4) ...
+Setting up libjbig0:s390x (2.0-2) ...
+Setting up libtiff5:s390x (4.0.2-6) ...
+Setting up libxss1:s390x (1:1.2.2-1) ...
+Setting up libxt6:s390x (1:1.1.3-1) ...
+Setting up libmpc3:s390x (1.0.1-1) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
+Setting up gcc-4.6-base:s390x (4.6.4-2) ...
+Setting up cpp-4.6 (4.6.4-2) ...
+Setting up gcc-4.6 (4.6.4-2) ...
Setting up html2text (1.3.2a-15+b1) ...
-Setting up gettext (0.18.1.1-5+b1) ...
+Setting up libasprintf-dev:s390x (0.18.1.1-10) ...
+Setting up libgettextpo-dev:s390x (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120410) ...
-Setting up dpatch (2.0.35) ...
-Setting up gcc (4:4.6.3-4) ...
-Setting up gfortran-4.6 (4.6.3-3) ...
-Setting up gfortran (4:4.6.3-4) ...
-update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev:s390x (1.0.6-1) ...
+Setting up debhelper (9.20130516) ...
+Setting up gfortran-4.6 (4.6.4-2) ...
+Setting up gfortran (4:4.6.3-8) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:s390x (1.0.6-4) ...
Setting up libjpeg8-dev:s390x (8d-1) ...
-Setting up liblapack3gf (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev:s390x (5.9-6) ...
-Setting up libncurses5-dev (5.9-6) ...
-Setting up libpaper1 (1.1.24+nmu1) ...
-
-Creating config file /etc/papersize with new version
-Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcre3-dev (1:8.30-4) ...
-Setting up zlib1g-dev:s390x (1:1.2.6.dfsg-2) ...
-Setting up libpng12-dev (1.2.49-1) ...
-Setting up libreadline6-dev:s390x (6.2-8+b1) ...
-Setting up libreadline-dev:s390x (6.2-8+b1) ...
-Setting up zip (3.0-4) ...
-Setting up unzip (6.0-6) ...
-Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
-Setting up tcl8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.15.0-1) ...
-Setting R_PAPERSIZE_USER default to 'a4'
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:s390x (5.9+20130504-1) ...
+Setting up libncurses5-dev:s390x (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:s390x (1:8.31-2) ...
+Setting up zlib1g-dev:s390x (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:s390x (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:s390x (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.1-1) ...
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.15.0-1) ...
-Setting up g++-4.6 (4.6.3-3) ...
-Setting up libstdc++6-4.6-dev (4.6.3-3) ...
+Setting up r-base-dev (3.0.1-1) ...
+Setting up g++-4.6 (4.6.4-2) ...
+Setting up libstdc++6-4.6-dev (4.6.4-2) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 13 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 26 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-s390x s390x (s390x)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-3 gcc-4.6_4.6.3-3 libc6-dev_2.13-27 libstdc++6_4.7.0-3 libstdc++6-4.6-dev_4.6.3-3 linux-libc-dev_3.2.13-1
-Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 cdbs_0.4.109 coreutils_8.13-3.1 cpp_4:4.6.3-4 cpp-4.6_4.6.3-3 dash_0.5.7-3 debconf_1.5.42 debconf-i18n_1.5.42 debfoster_2.7-1.1+b1 debhelper_9.20120410 debian-archive-keyring_2010.08.28 debianutils_4.3 diffutils_1:3.2-2 dpatch_2.0.35 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-1 e2fsprogs_1.42.2-1 fakeroot_1.18.2-1 file_5.11-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.3-3 g++-4.6_4.6.3-3 gcc_4:4.6.3-4 gcc-4.6_4.6.3-3 gcc-4.6-base_4.6.3-3 gcc-4.7-base_4.7.0-3 gettext_0.18.1.1-5+b1 gettext-base_0.18.1.1-5+b1 gfortran_4:4.6.3-4 gfortran-4.6_4.6.3-3 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.10-1 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15+b1 initscripts_2.88dsf-22.1 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-27 libc-dev-bin_2.13-27 libc6_2.13-27 libc6-dev_2.13-27 libcairo2_1.12.0-2 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-1 libcroco3_0.6.5-1 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libexpat1_2.1.0-1 libffi5_3.0.10-3+b1 libfile-fcntllock-perl_0.14-1 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8+b1 libgcc1_1:4.7.0-3 libgdbm3_1.8.3-10+b1 libgfortran3_4.7.0-3 libglib2.0-0_2.32.0-4 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-3 libice6_2:1.0.8-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7+b2 liblzma5_5.1.1alpha+20110809-3+b1 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4+b1 libmpfr4_3.1.0-4 libncurses5_5.9-6 libncurses5-dev_5.9-6 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_1:8.30-4 libpcre3-dev_1:8.30-4 libpcrecpp0_1:8.30-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.49-1 libpng12-dev_1.2.49-1 libreadline-dev_6.2-8+b1 libreadline6_6.2-8+b1 libreadline6-dev_6.2-8+b1 libselinux1_2.1.9-4 libsemanage-common_2.1.6-5 libsemanage1_2.1.6-5 libsepol1_2.1.4-2 libslang2_2.2.4-7 libsm6_2:1.2.1-2 libss2_1.42.2-1 libstdc++6_4.7.0-3 libstdc++6-4.6-dev_4.6.3-3 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b2 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-6 libtinfo5_5.9-6 libunistring0_0.9.3-5+b1 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.2.13-1 login_1:4.1.5-1 lsb-base_3.2+Debian31 make_3.81-8.1+b1 man-db_2.6.1-2 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-27 ncurses-base_5.9-4 ncurses-bin_5.9-6 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 r-base-core_2.15.0-1 r-base-dev_2.15.0-1 readline-common_6.2-8 sed_4.2.1-9+b1 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2012b-1 ucf_3.0025+nmu2 unzip_6.0-6 util-linux_2.20.1-4 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3+b1 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.6_4.6.4-2 gcc-4.6_4.6.4-2 libc6-dev_2.17-3 libstdc++6_4.7.2-5 libstdc++6-4.6-dev_4.6.4-2 linux-libc-dev_3.2.41-2
+Package versions: apt_0.9.7.8+b1 base-files_7.1 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.20-3 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2 dash_0.5.7-3 debconf_1.5.49 debconf-i18n_1.5.49 debfoster_2.7-1.2 debhelper_9.20130516 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-1 findutils_4.4.2-5 fontconfig_2.9.0-7.1 fontconfig-config_2.9.0-7.1 fonts-dejavu-core_2.33+svn2514-3 g++_4:4.6.3-8 g++-4.6_4.6.4-2 gcc_4:4.6.3-8 gcc-4.6_4.6.4-2 gcc-4.6-base_4.6.4-2 gcc-4.7-base_4.7.2-5 gcc-4.8-base_4.8.0-7 gettext_0.18.1.1-10 gettext-base_0.18.1.1-10 gfortran_4:4.6.3-8 gfortran-4.6_4.6.4-2 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.14-1 groff-base_1.22.2-2 gzip_1.5-1.1 hostname_3.12 html2text_1.3.2a-15+b1 initscripts_2.88dsf-41 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7.8+b1 libasprintf-dev_0.18.1.1-10 libasprintf0c2_0.18.1.1-10 libattr1_1:2.4.46-8 libblas-dev_1.2.20110419-5 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.3 libbz2-1.0_1.0.6-4 libbz2-dev_1.0.6-4 libc-bin_2.13-38 libc-dev-bin_2.17-3 libc6_2.17-3 libc6-dev_2.17-3 libcairo2_1.12.14-4 libclass-isa-perl_0.36-5 libcomerr2_1.42.5-1.1 libcroco3_0.6.8-2 libdatrie1_0.2.6-2 libdb5.1_5.1.29-5 libdpkg-perl_1.16.10 libexpat1_2.1.0-3 libffi6_3.0.13-4 libfile-fcntllock-perl_0.14-2 libfontconfig1_2.9.0-7.1 libfreetype6_2.4.9-1.1 libgc1c2_1:7.1-9.1 libgcc1_1:4.7.2-5 libgdbm3_1.8.3-11 libgettextpo-dev_0.18.1.1-10 libgettextpo0_0.18.1.1-10 libgfortran3_4.8.0-7 libglib2.0-0_2.36.1-2build1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.2-5 libice6_2:1.0.8-2 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.4.2+dfsg-1 liblapack3_3.4.2+dfsg-1 liblocale-gettext-perl_1.05-7+b2 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-1 libmount1_2.20.1-5.3 libmpc2_0.9-4+b1 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libncurses5_5.9+20130504-1 libncurses5-dev_5.9+20130504-1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.31-2 libpcre3-dev_1:8.31-2 libpcrecpp0_1:8.31-2 libpipeline1_1.2.3-1 libpixman-1-0_0.26.0-4 libpng12-0_1.2.49-4 libpng12-dev_1.2.49-4 libreadline-dev_6.2+dfsg-0.1 libreadline6_6.2+dfsg-0.1 libreadline6-dev_6.2+dfsg-0.1 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libss2_1.42.5-1.1 libstdc++6_4.7.2-5 libstdc++6-4.6-dev_4.6.4-2 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b2 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.19-2 libthai0_0.1.19-2 libtiff5_4.0.2-6 libtimedate-perl_1.2000-1 libtinfo-dev_5.9+20130504-1 libtinfo5_5.9+20130504-1 libunistring0_0.9.3-5+b1 libusb-0.1-4_2:0.1.12-23+nmu1 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.3 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-2 libxcb-shm0_1.8.1-2 libxcb1_1.8.1-2 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-7+nmu1 libxrender1_1:0.9.7-1 libxss1_1:1.2.2-1 libxt6_1:1.1.3-1 linux-libc-dev_3.2.41-2 login_1:4.1.5.1-1 lsb-base_4.1+Debian9 make_3.81-8.2 man-db_2.6.3-6 mawk_1.3.3-17 mount_2.20.1-5.3 multiarch-support_2.13-38 ncurses-base_5.9-10 ncurses-bin_5.9+20130504-1 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-21 perl-base_5.14.2-21 perl-modules_5.14.2-21 po-debconf_1.0.16+nmu2 r-base-core_3.0.1-1 r-base-dev_3.0.1-1 readline-common_6.2+dfsg-0.1 sed_4.2.1-10 sensible-utils_0.0.7 sudo_1.8.5p2-1+nmu1 sysv-rc_2.88dsf-41 sysvinit_2.88dsf-41 sysvinit-utils_2.88dsf-41 tar_1.26+dfsg-5 tcl8.5_8.5.11-2 tk8.5_8.5.11-2 ttf-dejavu-core_2.33+svn2514-3 tzdata_2013b-2 ucf_3.0025+nmu3 unzip_6.0-9 util-linux_2.20.1-5.3 x11-common_1:7.7+3 xdg-utils_1.1.0~rc1+git20111210-7 xz-utils_5.1.1alpha+20120614-2 zip_3.0-7 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -1569,12 +1632,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Apr 12 02:45:32 2012 UTC using RSA key ID 2295D502
+gpgv: Signature made Thu May 16 14:46:42 2013 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.12.0~dfsg-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.12.0~dfsg
-dpkg-source: info: unpacking r-bioc-limma_3.12.0~dfsg.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.12.0~dfsg-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.16.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.16.3~dfsg
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg-1.debian.tar.gz
Check disc space
────────────────
@@ -1584,27 +1647,12 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.12.0~dfsg-1
- dpkg-source --before-build r-bioc-limma-3.12.0~dfsg
+dpkg-buildpackage: source version 3.16.3~dfsg-1
+ dpkg-source --before-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: host architecture s390x
fakeroot debian/rules clean
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
-/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg'
-if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "reverse-patches" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-for dir in debian/patches ; do \
- rm -f $dir/*.log ; \
- done
dh_clean
rm -f debian/r-bioc-limma.substvars
rm -f debian/r-bioc-limma.*.debhelper
@@ -1625,26 +1673,9 @@ if test -d src; then \
fi
rm -f config.log config.status
debian/rules build-arch
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
-/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg'
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg'
-if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg'
fakeroot debian/rules binary-arch
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
@@ -1656,26 +1687,26 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
install -d debian/r-bioc-limma/usr/lib/R/site-library
-echo "R:Depends=r-base-core (>= 2.15.0-1)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 3.0.1-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fPIC -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg/src'
-installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/src'
+installing to /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -1683,22 +1714,27 @@ installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma
*** installing help indices
** building package indices
** installing vignettes
- 'limma.Rnw'
** testing if installed package can be loaded
-
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/CITATION
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/doc/*
dh_installdocs -pr-bioc-limma
install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/doc/r-bioc-limma \;
+ cp -a debian/README.test debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ chown -R 0:0 debian/r-bioc-limma/usr/share/doc
+ chmod -R go=rX debian/r-bioc-limma/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-limma/usr/share/doc
install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
@@ -1730,9 +1766,9 @@ dh_strip -pr-bioc-limma
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
cd debian/r-bioc-limma
- chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
- gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
- cd '/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg'
+ chmod a-x usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ gzip -9nf usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ cd '/build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg'
dh_fixperms -pr-bioc-limma
find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -1762,62 +1798,79 @@ dh_md5sums -pr-bioc-limma
chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
dpkg-deb --build debian/r-bioc-limma ..
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.12.0~dfsg-1_s390x.deb'.
- dpkg-genchanges -B -ms390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../r-bioc-limma_3.12.0~dfsg-1_s390x.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.16.3~dfsg-1_s390x.deb'.
+ dpkg-genchanges -B -ms390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../r-bioc-limma_3.16.3~dfsg-1_s390x.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.12.0~dfsg
+ dpkg-source --after-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120412-0334
+Build finished at 20130517-1414
-r-bioc-limma_3.12.0~dfsg-1_s390x.changes:
+r-bioc-limma_3.16.3~dfsg-1_s390x.changes:
Format: 1.8
-Date: Thu, 12 Apr 2012 11:40:40 +0900
+Date: Thu, 16 May 2013 15:16:13 +0200
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: s390x
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
Distribution: sid
Urgency: low
Maintainer: s390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.12.0~dfsg-1) unstable; urgency=low
+ r-bioc-limma (3.16.3~dfsg-1) unstable; urgency=low
.
[ Charles Plessy ]
- 2d3420e Imported Upstream version 3.12.0~dfsg
- 4bbb8e4 Document LIMMA's copyright as a whole.
+ ff8c6db Imported Upstream version 3.12.1~dfsg
+ b4f097e Effective license is GPL-2, without the '+', as R is GPL-2.
.
[ Andreas Tille ]
- 8a61a4c Obtain references from inst/CITATION
+ * Imported new upstream version 3.16.3~dfsg
+ * debian/control
+ - added myself to Uploaders
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - Fake normalisation as it is done by `cme fix dpkg-control`
+ (the command did actually no change - the control file was
+ brought into shape manually)
+ - Removed versioned dependency of r-base-dev
+ * debian/copyright:
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - checked new upstream version and bumped version number
+ - Add years to Copyright fields
+ * debian/rules: Remove executable flag from doc files
+ * debian/source/format: Add explicit source format specification
Checksums-Sha1:
- 587b528418fc8e4e3840891e7934552c524a95c2 809774 r-bioc-limma_3.12.0~dfsg-1_s390x.deb
+ 7cca32fa82c32154b9646b83f2c90c3707b99ae6 1617786 r-bioc-limma_3.16.3~dfsg-1_s390x.deb
Checksums-Sha256:
- f7d1fac1135b8627276fbd2f8a988c7f26c6b0b8c464854fd5bce9b856d734c9 809774 r-bioc-limma_3.12.0~dfsg-1_s390x.deb
+ 51760bf4b700252d1a209110a5e1c788b419f0b9375e1e6caca037160d56a7fe 1617786 r-bioc-limma_3.16.3~dfsg-1_s390x.deb
Files:
- b931a98b35a4f4a330435e9c6fccd852 809774 gnu-r optional r-bioc-limma_3.12.0~dfsg-1_s390x.deb
+ 4f33d1f52ae5d9b7fb9a35af20abcdd1 1617786 gnu-r optional r-bioc-limma_3.16.3~dfsg-1_s390x.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.12.0~dfsg-1_s390x.deb
+r-bioc-limma_3.16.3~dfsg-1_s390x.deb
────────────────────────────────────
new debian package, version 2.0.
- size 809774 bytes: control archive= 1538 bytes.
- 774 bytes, 16 lines control
- 2290 bytes, 30 lines md5sums
+ size 1617786 bytes: control archive= 1667 bytes.
+ 773 bytes, 16 lines control
+ 2621 bytes, 34 lines md5sums
Package: r-bioc-limma
- Version: 3.12.0~dfsg-1
+ Version: 3.16.3~dfsg-1
Architecture: s390x
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 985
- Depends: libc6 (>= 2.13), r-base-core (>= 2.15.0-1)
+ Installed-Size: 1847
+ Depends: libc6 (>= 2.2), r-base-core (>= 3.0.1-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -1829,51 +1882,56 @@ r-bioc-limma_3.12.0~dfsg-1_s390x.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/lib/
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/lib/R/
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 9754 2012-04-12 03:34 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 383 2012-04-12 03:34 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 202046 2012-04-12 03:34 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3828 2012-04-12 03:34 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 1179 2012-04-12 03:34 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 35015 2012-04-12 03:34 ./usr/lib/R/site-library/limma/html/00Index.html
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 10632 2012-04-12 03:34 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1367 2012-04-12 03:34 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 472900 2012-04-12 03:34 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3345 2012-04-12 03:34 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 2431 2012-04-12 03:34 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 6317 2012-04-12 03:34 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 1901 2012-04-12 03:34 ./usr/lib/R/site-library/limma/NAMESPACE
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 1711 2012-04-12 03:34 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rwxr-xr-x root/root 673 2012-04-12 03:34 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 42743 2012-04-12 03:34 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 91993 2012-04-12 03:34 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rw-r--r-- root/root 966 2012-04-12 03:34 ./usr/lib/R/site-library/limma/DESCRIPTION
--rw-r--r-- root/root 3989 2012-04-12 03:34 ./usr/lib/R/site-library/limma/NEWS.Rd
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 521 2012-04-12 03:34 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 220 2012-04-12 03:34 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 5727 2012-04-12 03:34 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2943 2012-04-12 03:34 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 1050 2012-04-12 03:34 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 6157 2012-04-12 03:34 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rwxr-xr-x root/root 1230 2012-04-12 03:34 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/share/
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 264 2012-04-12 03:34 ./usr/share/doc/r-bioc-limma/README.Debian
--rw-r--r-- root/root 27996 2012-03-30 22:32 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 683 2012-04-12 03:34 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 2457 2012-04-12 03:34 ./usr/share/doc/r-bioc-limma/copyright
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 10085 2013-05-17 14:14 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 1056 2013-05-17 14:14 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 206552 2013-05-17 14:14 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 4120 2013-05-17 14:14 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2013-05-17 14:14 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 37337 2013-05-17 14:14 ./usr/lib/R/site-library/limma/html/00Index.html
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10632 2013-05-17 14:14 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1398 2013-05-17 14:14 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 494828 2013-05-17 14:14 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3414 2013-05-17 14:14 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 2567 2013-05-17 14:14 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 6703 2013-05-17 14:14 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2046 2013-05-17 14:14 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 1711 2013-05-17 14:14 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 673 2013-05-17 14:14 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 806089 2013-05-17 14:14 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 45597 2013-05-17 14:14 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 102936 2013-05-17 14:14 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 987 2013-05-17 14:14 ./usr/lib/R/site-library/limma/DESCRIPTION
+-rw-r--r-- root/root 11214 2013-05-17 14:14 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 541 2013-05-17 14:14 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 219 2013-05-17 14:14 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 5944 2013-05-17 14:14 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 3089 2013-05-17 14:14 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 1063 2013-05-17 14:14 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 6375 2013-05-17 14:14 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 963 2013-05-17 14:14 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/share/doc/r-bioc-limma/
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/share/doc/r-bioc-limma/tests/
+-rw-r--r-- root/root 14649 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save.gz
+-rw-r--r-- root/root 2097 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.R.gz
+-rw-r--r-- root/root 437 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.test
+-rw-r--r-- root/root 264 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 31097 2013-05-02 00:02 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 1153 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 2605 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/copyright
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -1887,7 +1945,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-s390x-sbuild-05dddfa4-21bf-4e7f-a8c3-6f6286a6040f/sid-s390x-sbuild/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly
+Purging /var/lib/schroot/mount/sid-s390x-sbuild-05de5256-6c26-4dd9-b80b-c80fe40f1f51/sid-s390x-sbuild/build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -1895,18 +1953,18 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: s390x
-Build-Space: 3272
-Build-Time: 15
+Build-Space: 5884
+Build-Time: 9
Distribution: sid
-Install-Time: 28
-Job: r-bioc-limma_3.12.0~dfsg-1
+Install-Time: 44
+Job: r-bioc-limma_3.16.3~dfsg-1
Package: r-bioc-limma
-Package-Time: 76
-Source-Version: 3.12.0~dfsg-1
-Space: 3272
+Package-Time: 87
+Source-Version: 3.16.3~dfsg-1
+Space: 5884
Status: successful
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120412-0334
-Build needed 00:01:16, 3272k disc space
-Signature with key 'BE1C5586' requested:
+Finished at 20130517-1414
+Build needed 00:01:27, 5884k disc space
+Signature with key '06DAB0BE' requested:
diff --git a/s390x.log b/s390x.log
index c9ad264..7b6a34b 100644
--- a/s390x.log
+++ b/s390x.log
@@ -1,72 +1,66 @@
-From buildd at zandonai.debian.org Thu Apr 12 03:34:22 2012
+From buildd at zandonai.debian.org Fri May 17 14:14:39 2013
Return-path: <buildd at zandonai.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+Received: from mailly.debian.org ([82.195.75.114])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
- by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ CN=mailly.debian.org, EMAIL=hostmaster at mailly.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:DHE_RSA_AES_128_CBC_SHA1:16)
(Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
- id 1SIAne-0007Eo-LL
- for logs at buildd.debian.org; Thu, 12 Apr 2012 03:34:22 +0000
+ id 1UdLQc-0007RT-Qe
+ for logs at buildd.debian.org; Fri, 17 May 2013 14:14:38 +0000
Received: from zandonai.debian.org ([80.245.147.46])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=zandonai.debian.org,
EMAIL=hostmaster at zandonai.debian.org (verified)
- by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
- id 1SIAnd-0003Sl-C1; Thu, 12 Apr 2012 03:34:21 +0000
+ by mailly.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:256)
+ (Exim 4.80) (envelope-from <buildd at zandonai.debian.org>)
+ id 1UdLQc-0002mk-1D; Fri, 17 May 2013 14:14:38 +0000
Received: from buildd by zandonai.debian.org with local (Exim 4.72)
(envelope-from <buildd at zandonai.debian.org>)
- id 1SIAnc-0008Os-HO; Thu, 12 Apr 2012 03:34:20 +0000
-Message-Id: <E1SIAnc-0008Os-HO at zandonai.debian.org>
+ id 1UdLQb-0007zd-LF; Fri, 17 May 2013 14:14:37 +0000
+Message-Id: <E1UdLQb-0007zd-LF at zandonai.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Thu, 12 Apr 2012 03:34:20 +0000
+Date: Fri, 17 May 2013 14:14:37 +0000
From: buildd on zandonai <buildd at zandonai.debian.org>
-To: aurelien at aurel32.net,phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.12.0~dfsg-1 on s390x
+To: phil+buildd at philkern.de,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.16.3~dfsg-1 on s390x
(dist=sid)
-Key-Id: BE1C5586
+Key-Id: 06DAB0BE
Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zandonai.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.12.0~dfsg-1 (s390x) 12 Apr 2012 03:33 ║
+║ r-bioc-limma 3.16.3~dfsg-1 (s390x) 17 May 2013 14:13 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.12.0~dfsg-1
-Source Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
+Source Version: 3.16.3~dfsg-1
Architecture: s390x
-Get:1 http://ftp.de.debian.org unstable InRelease [208 kB]
-Get:2 http://incoming.debian.org unstable InRelease [208 kB]
-Get:3 http://ftp.de.debian.org unstable/main Sources [6216 kB]
-Get:4 http://ftp.de.debian.org unstable/contrib Sources [54.5 kB]
-Get:5 http://ftp.de.debian.org unstable/non-free Sources [97.8 kB]
-Get:6 http://ftp.de.debian.org unstable/main s390x Packages [5689 kB]
-Ign http://incoming.debian.org InRelease
-Get:7 http://ftp.de.debian.org unstable/contrib s390x Packages [36.3 kB]
-Get:8 http://incoming.debian.org Release.gpg [836 B]
-Ign http://ftp.de.debian.org unstable/contrib TranslationIndex
-Get:9 http://ftp.de.debian.org unstable/main TranslationIndex [2223 B]
-Get:10 http://ftp.de.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:11 http://ftp.de.debian.org unstable/main Translation-en [3936 kB]
-Get:12 http://incoming.debian.org unstable/main Sources [6221 kB]
-Get:13 http://incoming.debian.org unstable/contrib Sources [54.5 kB]
-Get:14 http://incoming.debian.org unstable/non-free Sources [97.7 kB]
-Get:15 http://incoming.debian.org unstable/main s390x Packages [5706 kB]
-Get:16 http://incoming.debian.org unstable/contrib s390x Packages [36.3 kB]
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:17 http://incoming.debian.org unstable/main TranslationIndex [2223 B]
-Get:18 http://incoming.debian.org Release [1601 B]
-Get:19 http://incoming.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:20 http://incoming.debian.org unstable/main Translation-en [3936 kB]
-Get:21 http://incoming.debian.org Sources [42.9 kB]
-Get:22 http://incoming.debian.org Packages [682 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 33.3 MB in 12s (2752 kB/s)
+Get:1 http://ftp.de.debian.org unstable Release.gpg [1571 B]
+Get:2 http://ftp.de.debian.org unstable Release [203 kB]
+Get:3 http://incoming.debian.org unstable Release.gpg [1571 B]
+Get:4 http://ftp.de.debian.org unstable/main Sources [6729 kB]
+Get:5 http://incoming.debian.org buildd-unstable Release.gpg [1571 B]
+Get:6 http://incoming.debian.org unstable Release [203 kB]
+Get:7 http://incoming.debian.org buildd-unstable Release [109 kB]
+Get:8 http://incoming.debian.org unstable/main Sources [6729 kB]
+Get:9 http://ftp.de.debian.org unstable/contrib Sources [53.7 kB]
+Get:10 http://ftp.de.debian.org unstable/non-free Sources [103 kB]
+Get:11 http://ftp.de.debian.org unstable/main s390x Packages [6147 kB]
+Get:12 http://ftp.de.debian.org unstable/contrib s390x Packages [36.6 kB]
+Get:13 http://incoming.debian.org unstable/contrib Sources [53.7 kB]
+Get:14 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:15 http://incoming.debian.org unstable/main s390x Packages [6147 kB]
+Get:16 http://incoming.debian.org unstable/contrib s390x Packages [36.6 kB]
+Get:17 http://incoming.debian.org buildd-unstable/main Sources [104 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib Sources [873 B]
+Get:19 http://incoming.debian.org buildd-unstable/non-free Sources [2683 B]
+Get:20 http://incoming.debian.org buildd-unstable/main s390x Packages [40.4 kB]
+Get:21 http://incoming.debian.org buildd-unstable/contrib s390x Packages [14 B]
+Fetched 26.8 MB in 24s (1087 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -87,11 +81,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 288 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (dsc) [2030 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (tar) [283 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (diff) [3098 B]
-Fetched 288 kB in 0s (307 kB/s)
+Need to get 1058 kB of source archives.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (dsc) [1409 B]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (tar) [1052 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (diff) [4167 B]
+Fetched 1058 kB in 0s (2670 kB/s)
Download complete and in download only mode
Check arch
@@ -104,493 +98,545 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
-build-essential: already installed (11.5+b1)
-fakeroot: already installed (1.18.2-1)
+build-essential: already installed (11.6)
+fakeroot: already installed (1.18.4-2)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 27 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 38 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 27 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 38 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev
Checking for already installed dependencies...
-libc6-dev: already installed (2.13-27)
-gcc: already installed (4:4.6.3-3 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-3 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1+b1)
-dpkg-dev: already installed (1.16.2 >= 1.13.5 is satisfied)
+base-files: already installed (7.1)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2+dfsg-1)
+bsdutils: already installed (1:2.20.1-5.3)
+coreutils: already installed (8.20-3)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1.1)
+findutils: already installed (4.4.2-5)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+libc-bin: already installed (2.13-38)
+login: already installed (1:4.1.5.1-1)
+mount: already installed (2.20.1-5.3)
+ncurses-base: already installed (5.9-10)
+ncurses-bin: already installed (5.9-10)
+perl-base: already installed (5.14.2-21)
+sed: already installed (4.2.1-10)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-5)
+util-linux: already installed (2.20.1-5.3)
+libc6-dev: already installed (2.13-38)
+gcc: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120410
+Using default version 9.20130516
cdbs: missing
r-base-dev: missing
-Using default version 2.15.0-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils cpp cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
- gcc gcc-4.6 gcc-4.6-base gcc-4.7-base gettext gettext-base gfortran
- gfortran-4.6 groff-base html2text intltool-debian libblas-dev libblas3gf
- libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1
- libfreetype6 libgcc1 libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5
+ bsdmainutils cpp-4.6 file fontconfig fontconfig-config fonts-dejavu-core
+ g++-4.6 gcc-4.6 gcc-4.6-base gcc-4.8-base gettext gettext-base gfortran
+ gfortran-4.6 groff-base html2text intltool-debian libasprintf-dev
+ libasprintf0c2 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6 libc6-dev
+ libcairo2 libcroco3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6
+ libgettextpo-dev libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libmpc3 libncurses5
libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev
libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
- libreadline-dev libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev
- libthai-data libthai0 libtiff4 libtinfo-dev libtinfo5 libunistring0 libx11-6
- libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
- libxft2 libxml2 libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf
- r-base-core tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common xdg-utils zip
+ libreadline-dev libreadline6-dev libsm6 libstdc++6-4.6-dev libthai-data
+ libthai0 libtiff5 libtinfo-dev libtinfo5 libunistring0 libx11-6 libx11-data
+ libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
+ libxml2 libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf r-base-core
+ tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g
zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts cpp-doc gcc-4.6-locales dh-make
- curl defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-multilib
- manpages-dev autoconf automake1.9 libtool flex bison gdb gcc-doc
- gcc-4.6-multilib libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg
- libquadmath-dbg libmudflap0-dbg gettext-doc gfortran-multilib gfortran-doc
- gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
- ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
- r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
- texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
- texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
- texi2html tclreadline gvfs-bin
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make
+ g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ libcloog-ppl0 libppl-c2 libppl7 gettext-doc gfortran-multilib gfortran-doc
+ gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff glibc-doc
+ ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp
+ ttf-arphic-gkai00mp ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base
+ texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
+ texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
+ texlive-latex-extra texinfo texi2html tcl-tclreadline gvfs-bin
Recommended packages:
- autotools-dev patchutils autopoint libglib2.0-data shared-mime-info libgpm2
- xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
- x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ autotools-dev curl wget lynx-cur autopoint manpages-dev libglib2.0-data
+ shared-mime-info libgpm2 xml-core libmail-sendmail-perl r-recommended
+ r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
- bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
- libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libffi5 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
- libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
- libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
- po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core unzip
- x11-common xdg-utils zip zlib1g-dev
+ bsdmainutils cdbs debhelper file fontconfig fontconfig-config
+ fonts-dejavu-core gcc-4.8-base gettext gettext-base gfortran gfortran-4.6
+ groff-base html2text intltool-debian libasprintf-dev libasprintf0c2
+ libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libffi6 libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0
+ libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3 libmagic1 libmpc3 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 libx11-6
+ libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
+ libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
+ r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+ zlib1g-dev
The following packages will be upgraded:
- cpp cpp-4.6 g++-4.6 gcc gcc-4.6 gcc-4.6-base gcc-4.7-base libgcc1 libgomp1
- libncurses5 libstdc++6 libstdc++6-4.6-dev libtinfo5 ncurses-bin
-14 upgraded, 76 newly installed, 0 to remove and 13 not upgraded.
-Need to get 75.2 MB of archives.
-After this operation, 127 MB of additional disk space will be used.
-Get:1 http://ftp.de.debian.org/debian/ unstable/main ncurses-bin s390x 5.9-6 [336 kB]
-Get:2 http://ftp.de.debian.org/debian/ unstable/main libgomp1 s390x 4.7.0-3 [29.8 kB]
-Get:3 http://ftp.de.debian.org/debian/ unstable/main gcc-4.7-base s390x 4.7.0-3 [139 kB]
-Get:4 http://ftp.de.debian.org/debian/ unstable/main libstdc++6 s390x 4.7.0-3 [379 kB]
-Get:5 http://ftp.de.debian.org/debian/ unstable/main libgcc1 s390x 1:4.7.0-3 [31.0 kB]
-Get:6 http://ftp.de.debian.org/debian/ unstable/main libtinfo5 s390x 5.9-6 [280 kB]
-Get:7 http://ftp.de.debian.org/debian/ unstable/main libncurses5 s390x 5.9-6 [304 kB]
-Get:8 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390x 1.2.1-1 [40.5 kB]
-Get:9 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390x 5.11-1 [256 kB]
-Get:10 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390x 1:8.30-4 [253 kB]
-Get:11 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390x 2.1.0-1 [144 kB]
-Get:12 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 s390x 2.4.9-1 [465 kB]
-Get:13 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:14 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3.1 [219 kB]
-Get:15 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 s390x 2.8.0-3.1 [285 kB]
-Get:16 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 s390x 0.24.4-1 [348 kB]
-Get:17 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 s390x 1.2.49-1 [193 kB]
-Get:18 http://ftp.de.debian.org/debian/ unstable/main libxau6 s390x 1:1.0.7-1 [18.6 kB]
-Get:19 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 s390x 1:1.1.0-4 [23.5 kB]
-Get:20 http://ftp.de.debian.org/debian/ unstable/main libxcb1 s390x 1.8.1-1 [52.7 kB]
-Get:21 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-4 [187 kB]
-Get:22 http://ftp.de.debian.org/debian/ unstable/main libx11-6 s390x 2:1.4.4-4 [907 kB]
-Get:23 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 s390x 1.8.1-1 [19.0 kB]
-Get:24 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 s390x 1.8.1-1 [10.2 kB]
-Get:25 http://ftp.de.debian.org/debian/ unstable/main libxrender1 s390x 1:0.9.6-2 [32.9 kB]
-Get:26 http://ftp.de.debian.org/debian/ unstable/main libcairo2 s390x 1.12.0-2 [895 kB]
-Get:27 http://ftp.de.debian.org/debian/ unstable/main libffi5 s390x 3.0.10-3+b1 [26.2 kB]
-Get:28 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390x 2.32.0-4 [2084 kB]
-Get:29 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390x 2.7.8.dfsg-7 [894 kB]
-Get:30 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390x 0.6.5-1 [151 kB]
-Get:31 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 s390x 0.2.5-3 [29.7 kB]
-Get:32 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 s390x 4.7.0-3 [358 kB]
-Get:33 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.6+12 [283 kB]
-Get:34 http://ftp.de.debian.org/debian/ unstable/main libice6 s390x 2:1.0.8-2 [65.6 kB]
-Get:35 http://ftp.de.debian.org/debian/ unstable/main libjpeg8 s390x 8d-1 [190 kB]
-Get:36 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.17-1 [205 kB]
-Get:37 http://ftp.de.debian.org/debian/ unstable/main libthai0 s390x 0.1.17-1 [46.6 kB]
-Get:38 http://ftp.de.debian.org/debian/ unstable/main libxft2 s390x 2.2.0-3 [61.0 kB]
-Get:39 http://ftp.de.debian.org/debian/ unstable/main fontconfig s390x 2.8.0-3.1 [337 kB]
-Get:40 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 s390x 1.30.0-1 [473 kB]
-Get:41 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 s390x 1:8.30-4 [126 kB]
-Get:42 http://ftp.de.debian.org/debian/ unstable/main libsm6 s390x 2:1.2.1-2 [34.9 kB]
-Get:43 http://ftp.de.debian.org/debian/ unstable/main libtiff4 s390x 3.9.6-2 [211 kB]
-Get:44 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390x 0.9.3-5+b1 [442 kB]
-Get:45 http://ftp.de.debian.org/debian/ unstable/main libxext6 s390x 2:1.3.0-3 [53.8 kB]
-Get:46 http://ftp.de.debian.org/debian/ unstable/main libxss1 s390x 1:1.2.1-2 [16.9 kB]
-Get:47 http://ftp.de.debian.org/debian/ unstable/main libxt6 s390x 1:1.1.1-2 [213 kB]
-Get:48 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390x 9.0.1 [214 kB]
-Get:49 http://ftp.de.debian.org/debian/ unstable/main groff-base s390x 1.21-7 [1187 kB]
-Get:50 http://ftp.de.debian.org/debian/ unstable/main man-db s390x 2.6.1-2 [1070 kB]
-Get:51 http://ftp.de.debian.org/debian/ unstable/main g++-4.6 s390x 4.6.3-3 [5558 kB]
-Get:52 http://ftp.de.debian.org/debian/ unstable/main libstdc++6-4.6-dev s390x 4.6.3-3 [1719 kB]
-Get:53 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6 s390x 4.6.3-3 [4358 kB]
-Get:54 http://ftp.de.debian.org/debian/ unstable/main cpp-4.6 s390x 4.6.3-3 [4048 kB]
-Get:55 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6-base s390x 4.6.3-3 [140 kB]
-Get:56 http://ftp.de.debian.org/debian/ unstable/main file s390x 5.11-1 [53.9 kB]
-Get:57 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390x 0.18.1.1-5+b1 [157 kB]
-Get:58 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.109 [79.4 kB]
-Get:59 http://ftp.de.debian.org/debian/ unstable/main cpp s390x 4:4.6.3-4 [16.3 kB]
-Get:60 http://ftp.de.debian.org/debian/ unstable/main html2text s390x 1.3.2a-15+b1 [111 kB]
-Get:61 http://ftp.de.debian.org/debian/ unstable/main gettext s390x 0.18.1.1-5+b1 [2163 kB]
-Get:62 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:63 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:64 http://ftp.de.debian.org/debian/ unstable/main debhelper all 9.20120410 [694 kB]
-Get:65 http://ftp.de.debian.org/debian/ unstable/main dpatch all 2.0.35 [95.2 kB]
-Get:66 http://ftp.de.debian.org/debian/ unstable/main gcc s390x 4:4.6.3-4 [5038 B]
-Get:67 http://ftp.de.debian.org/debian/ unstable/main gfortran-4.6 s390x 4.6.3-3 [4789 kB]
-Get:68 http://ftp.de.debian.org/debian/ unstable/main gfortran s390x 4:4.6.3-4 [1132 B]
-Get:69 http://ftp.de.debian.org/debian/ unstable/main libblas3gf s390x 1.2.20110419-2 [221 kB]
-Get:70 http://ftp.de.debian.org/debian/ unstable/main libblas-dev s390x 1.2.20110419-2 [230 kB]
-Get:71 http://ftp.de.debian.org/debian/ unstable/main libbz2-dev s390x 1.0.6-1 [38.8 kB]
-Get:72 http://ftp.de.debian.org/debian/ unstable/main libjpeg8-dev s390x 8d-1 [297 kB]
-Get:73 http://ftp.de.debian.org/debian/ unstable/main liblapack3gf s390x 3.3.1-1 [4037 kB]
-Get:74 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev s390x 3.3.1-1 [4296 kB]
-Get:75 http://ftp.de.debian.org/debian/ unstable/main libtinfo-dev s390x 5.9-6 [121 kB]
-Get:76 http://ftp.de.debian.org/debian/ unstable/main libncurses5-dev s390x 5.9-6 [414 kB]
-Get:77 http://ftp.de.debian.org/debian/ unstable/main libpaper1 s390x 1.1.24+nmu1 [21.9 kB]
-Get:78 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils s390x 1.1.24+nmu1 [18.3 kB]
-Get:79 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev s390x 1:8.30-4 [359 kB]
-Get:80 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390x 1:1.2.6.dfsg-2 [217 kB]
-Get:81 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev s390x 1.2.49-1 [273 kB]
-Get:82 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev s390x 6.2-8+b1 [272 kB]
-Get:83 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev s390x 6.2-8+b1 [898 B]
-Get:84 http://ftp.de.debian.org/debian/ unstable/main zip s390x 3.0-4 [349 kB]
-Get:85 http://ftp.de.debian.org/debian/ unstable/main unzip s390x 6.0-6 [203 kB]
-Get:86 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB]
-Get:87 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 s390x 8.5.11-1 [1652 kB]
-Get:88 http://ftp.de.debian.org/debian/ unstable/main tk8.5 s390x 8.5.11-1 [1224 kB]
-Get:89 http://ftp.de.debian.org/debian/ unstable/main r-base-core s390x 2.15.0-1 [20.5 MB]
-Get:90 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 2.15.0-1 [3900 B]
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libc-dev-bin libc6 libc6-dev
+ libncurses5 libstdc++6-4.6-dev libtinfo5 ncurses-bin zlib1g
+12 upgraded, 84 newly installed, 0 to remove and 26 not upgraded.
+Need to get 82.5 MB of archives.
+After this operation, 130 MB of additional disk space will be used.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main libtinfo5 s390x 5.9+20130504-1 [301 kB]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main libncurses5 s390x 5.9+20130504-1 [121 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main ncurses-bin s390x 5.9+20130504-1 [366 kB]
+Get:4 http://incoming.debian.org/debian-buildd/ buildd-unstable/main libc6-dev s390x 2.17-3 [2955 kB]
+Get:5 http://ftp.de.debian.org/debian/ unstable/main zlib1g s390x 1:1.2.8.dfsg-1 [94.1 kB]
+Get:6 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390x 1.2.3-1 [41.6 kB]
+Get:7 http://ftp.de.debian.org/debian/ unstable/main groff-base s390x 1.22.2-2 [738 kB]
+Get:8 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390x 9.0.5 [216 kB]
+Get:9 http://ftp.de.debian.org/debian/ unstable/main man-db s390x 2.6.3-6 [888 kB]
+Get:10 http://ftp.de.debian.org/debian/ unstable/main libasprintf0c2 s390x 0.18.1.1-10 [27.2 kB]
+Get:11 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390x 1:5.14-1 [214 kB]
+Get:12 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390x 1:8.31-2 [259 kB]
+Get:13 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390x 2.8.0+dfsg1-7+nmu1 [902 kB]
+Get:14 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390x 2.1.0-3 [145 kB]
+Get:15 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 s390x 2.4.9-1.1 [465 kB]
+Get:16 http://ftp.de.debian.org/debian/ unstable/main ucf all 3.0025+nmu3 [70.8 kB]
+Get:17 http://ftp.de.debian.org/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
+Get:18 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
+Get:19 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:20 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 s390x 2.9.0-7.1 [302 kB]
+Get:21 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 s390x 0.26.0-4 [368 kB]
+Get:22 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 s390x 1.2.49-4 [193 kB]
+Get:23 http://ftp.de.debian.org/debian/ unstable/main libxau6 s390x 1:1.0.7-1 [18.6 kB]
+Get:24 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 s390x 1:1.1.1-1 [26.5 kB]
+Get:25 http://ftp.de.debian.org/debian/ unstable/main libxcb1 s390x 1.8.1-2 [53.1 kB]
+Get:26 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:27 http://ftp.de.debian.org/debian/ unstable/main libx11-6 s390x 2:1.5.0-1 [917 kB]
+Get:28 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 s390x 1.8.1-2 [19.2 kB]
+Get:29 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 s390x 1.8.1-2 [10.4 kB]
+Get:30 http://ftp.de.debian.org/debian/ unstable/main libxext6 s390x 2:1.3.1-2 [56.8 kB]
+Get:31 http://ftp.de.debian.org/debian/ unstable/main libxrender1 s390x 1:0.9.7-1 [33.6 kB]
+Get:32 http://ftp.de.debian.org/debian/ unstable/main libcairo2 s390x 1.12.14-4 [1008 kB]
+Get:33 http://ftp.de.debian.org/debian/ unstable/main libffi6 s390x 3.0.13-4 [21.6 kB]
+Get:34 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390x 2.36.1-2build1 [2010 kB]
+Get:35 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 s390x 0.2.6-2 [30.6 kB]
+Get:36 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390x 0.9.3-5+b1 [442 kB]
+Get:37 http://ftp.de.debian.org/debian/ unstable/main libgettextpo0 s390x 0.18.1.1-10 [158 kB]
+Get:38 http://ftp.de.debian.org/debian/ unstable/main gcc-4.8-base s390x 4.8.0-7 [148 kB]
+Get:39 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 s390x 4.8.0-7 [359 kB]
+Get:40 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.7+3 [284 kB]
+Get:41 http://ftp.de.debian.org/debian/ unstable/main libice6 s390x 2:1.0.8-2 [65.6 kB]
+Get:42 http://ftp.de.debian.org/debian/ unstable/main libjpeg8 s390x 8d-1 [190 kB]
+Get:43 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.19-2 [156 kB]
+Get:44 http://ftp.de.debian.org/debian/ unstable/main libthai0 s390x 0.1.19-2 [44.0 kB]
+Get:45 http://ftp.de.debian.org/debian/ unstable/main libxft2 s390x 2.3.1-1 [63.6 kB]
+Get:46 http://ftp.de.debian.org/debian/ unstable/main fontconfig s390x 2.9.0-7.1 [351 kB]
+Get:47 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 s390x 1.30.0-1 [473 kB]
+Get:48 http://ftp.de.debian.org/debian/ unstable/main libpaper1 s390x 1.1.24+nmu2 [22.0 kB]
+Get:49 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 s390x 1:8.31-2 [128 kB]
+Get:50 http://ftp.de.debian.org/debian/ unstable/main libsm6 s390x 2:1.2.1-2 [34.9 kB]
+Get:51 http://ftp.de.debian.org/debian/ unstable/main libjbig0 s390x 2.0-2 [35.7 kB]
+Get:52 http://ftp.de.debian.org/debian/ unstable/main libtiff5 s390x 4.0.2-6 [245 kB]
+Get:53 http://ftp.de.debian.org/debian/ unstable/main libxss1 s390x 1:1.2.2-1 [17.5 kB]
+Get:54 http://ftp.de.debian.org/debian/ unstable/main libxt6 s390x 1:1.1.3-1 [216 kB]
+Get:55 http://ftp.de.debian.org/debian/ unstable/main libmpc3 s390x 1.0.1-1 [45.1 kB]
+Get:56 http://ftp.de.debian.org/debian/ unstable/main file s390x 1:5.14-1 [54.4 kB]
+Get:57 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390x 0.18.1.1-10 [156 kB]
+Get:58 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.121 [80.5 kB]
+Get:59 http://ftp.de.debian.org/debian/ unstable/main libstdc++6-4.6-dev s390x 4.6.4-2 [1704 kB]
+Get:60 http://ftp.de.debian.org/debian/ unstable/main g++-4.6 s390x 4.6.4-2 [5467 kB]
+Get:61 http://incoming.debian.org/debian-buildd/ buildd-unstable/main libc-dev-bin s390x 2.17-3 [234 kB]
+Get:62 http://incoming.debian.org/debian-buildd/ buildd-unstable/main libc6 s390x 2.17-3 [4602 kB]
+Get:63 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6 s390x 4.6.4-2 [4278 kB]
+Get:64 http://ftp.de.debian.org/debian/ unstable/main cpp-4.6 s390x 4.6.4-2 [3957 kB]
+Get:65 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6-base s390x 4.6.4-2 [142 kB]
+Get:66 http://ftp.de.debian.org/debian/ unstable/main html2text s390x 1.3.2a-15+b1 [111 kB]
+Get:67 http://ftp.de.debian.org/debian/ unstable/main libasprintf-dev s390x 0.18.1.1-10 [26.8 kB]
+Get:68 http://ftp.de.debian.org/debian/ unstable/main libgettextpo-dev s390x 0.18.1.1-10 [195 kB]
+Get:69 http://ftp.de.debian.org/debian/ unstable/main gettext s390x 0.18.1.1-10 [1864 kB]
+Get:70 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:71 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:72 http://ftp.de.debian.org/debian/ unstable/main debhelper all 9.20130516 [708 kB]
+Get:73 http://ftp.de.debian.org/debian/ unstable/main gfortran-4.6 s390x 4.6.4-2 [4699 kB]
+Get:74 http://ftp.de.debian.org/debian/ unstable/main gfortran s390x 4:4.6.3-8 [1132 B]
+Get:75 http://ftp.de.debian.org/debian/ unstable/main libblas3 s390x 1.2.20110419-5 [218 kB]
+Get:76 http://ftp.de.debian.org/debian/ unstable/main libblas-dev s390x 1.2.20110419-5 [227 kB]
+Get:77 http://ftp.de.debian.org/debian/ unstable/main libbz2-dev s390x 1.0.6-4 [39.1 kB]
+Get:78 http://ftp.de.debian.org/debian/ unstable/main libjpeg8-dev s390x 8d-1 [297 kB]
+Get:79 http://ftp.de.debian.org/debian/ unstable/main liblapack3 s390x 3.4.2+dfsg-1 [4152 kB]
+Get:80 http://incoming.debian.org/debian-buildd/ buildd-unstable/main libcroco3 s390x 0.6.8-2 [130 kB]
+Get:81 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev s390x 3.4.2+dfsg-1 [4555 kB]
+Get:82 http://ftp.de.debian.org/debian/ unstable/main libtinfo-dev s390x 5.9+20130504-1 [125 kB]
+Get:83 http://ftp.de.debian.org/debian/ unstable/main libncurses5-dev s390x 5.9+20130504-1 [233 kB]
+Get:84 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils s390x 1.1.24+nmu2 [18.5 kB]
+Get:85 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev s390x 1:8.31-2 [365 kB]
+Get:86 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390x 1:1.2.8.dfsg-1 [221 kB]
+Get:87 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev s390x 1.2.49-4 [273 kB]
+Get:88 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev s390x 6.2+dfsg-0.1 [200 kB]
+Get:89 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev s390x 6.2+dfsg-0.1 [898 B]
+Get:90 http://ftp.de.debian.org/debian/ unstable/main zip s390x 3.0-7 [354 kB]
+Get:91 http://ftp.de.debian.org/debian/ unstable/main unzip s390x 6.0-9 [204 kB]
+Get:92 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:93 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 s390x 8.5.11-2 [1657 kB]
+Get:94 http://ftp.de.debian.org/debian/ unstable/main tk8.5 s390x 8.5.11-2 [1229 kB]
+Get:95 http://ftp.de.debian.org/debian/ unstable/main r-base-core s390x 3.0.1-1 [21.6 MB]
+Get:96 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 3.0.1-1 [3896 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 75.2 MB in 7s (10.4 MB/s)
-(Reading database ... 10853 files and directories currently installed.)
-Preparing to replace ncurses-bin 5.9-5 (using .../ncurses-bin_5.9-6_s390x.deb) ...
-Unpacking replacement ncurses-bin ...
-Setting up ncurses-bin (5.9-6) ...
-(Reading database ... 10853 files and directories currently installed.)
-Preparing to replace libgomp1:s390x 4.7.0-1 (using .../libgomp1_4.7.0-3_s390x.deb) ...
-Unpacking replacement libgomp1:s390x ...
-Preparing to replace gcc-4.7-base:s390x 4.7.0-1 (using .../gcc-4.7-base_4.7.0-3_s390x.deb) ...
-Unpacking replacement gcc-4.7-base:s390x ...
-Setting up gcc-4.7-base:s390x (4.7.0-3) ...
-(Reading database ... 10853 files and directories currently installed.)
-Preparing to replace libstdc++6:s390x 4.7.0-1 (using .../libstdc++6_4.7.0-3_s390x.deb) ...
-Unpacking replacement libstdc++6:s390x ...
-Setting up libstdc++6:s390x (4.7.0-3) ...
-(Reading database ... 10853 files and directories currently installed.)
-Preparing to replace libgcc1:s390x 1:4.7.0-1 (using .../libgcc1_1%3a4.7.0-3_s390x.deb) ...
-Unpacking replacement libgcc1:s390x ...
-Setting up libgcc1:s390x (1:4.7.0-3) ...
-(Reading database ... 10853 files and directories currently installed.)
-Preparing to replace libtinfo5:s390x 5.9-5 (using .../libtinfo5_5.9-6_s390x.deb) ...
+Fetched 82.5 MB in 23s (3479 kB/s)
+(Reading database ... 10877 files and directories currently installed.)
+Preparing to replace libc6-dev:s390x 2.13-38 (using .../libc6-dev_2.17-3_s390x.deb) ...
+Unpacking replacement libc6-dev:s390x ...
+Preparing to replace libc-dev-bin 2.13-38 (using .../libc-dev-bin_2.17-3_s390x.deb) ...
+Unpacking replacement libc-dev-bin ...
+Preparing to replace libc6:s390x 2.13-38 (using .../libc6_2.17-3_s390x.deb) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Unpacking replacement libc6:s390x ...
+Setting up libc6:s390x (2.17-3) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Nothing to restart.
+(Reading database ... 10899 files and directories currently installed.)
+Preparing to replace libtinfo5:s390x 5.9-10 (using .../libtinfo5_5.9+20130504-1_s390x.deb) ...
Unpacking replacement libtinfo5:s390x ...
-Setting up libtinfo5:s390x (5.9-6) ...
-(Reading database ... 10853 files and directories currently installed.)
-Preparing to replace libncurses5:s390x 5.9-5 (using .../libncurses5_5.9-6_s390x.deb) ...
+Setting up libtinfo5:s390x (5.9+20130504-1) ...
+(Reading database ... 10899 files and directories currently installed.)
+Preparing to replace libncurses5:s390x 5.9-10 (using .../libncurses5_5.9+20130504-1_s390x.deb) ...
Unpacking replacement libncurses5:s390x ...
-Setting up libncurses5:s390x (5.9-6) ...
+Setting up libncurses5:s390x (5.9+20130504-1) ...
+(Reading database ... 10899 files and directories currently installed.)
+Preparing to replace ncurses-bin 5.9-10 (using .../ncurses-bin_5.9+20130504-1_s390x.deb) ...
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+Setting up ncurses-bin (5.9+20130504-1) ...
+(Reading database ... 10897 files and directories currently installed.)
+Preparing to replace zlib1g:s390x 1:1.2.7.dfsg-13 (using .../zlib1g_1%3a1.2.8.dfsg-1_s390x.deb) ...
+Unpacking replacement zlib1g:s390x ...
+Setting up zlib1g:s390x (1:1.2.8.dfsg-1) ...
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+Unpacking groff-base (from .../groff-base_1.22.2-2_s390x.deb) ...
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+Moving old data out of the way
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+Unpacking libcairo2:s390x (from .../libcairo2_1.12.14-4_s390x.deb) ...
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+Selecting previously unselected package libpaper1:s390x.
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+Selecting previously unselected package libtiff5:s390x.
+Unpacking libtiff5:s390x (from .../libtiff5_4.0.2-6_s390x.deb) ...
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+Unpacking libxss1:s390x (from .../libxss1_1%3a1.2.2-1_s390x.deb) ...
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+Unpacking libxt6:s390x (from .../libxt6_1%3a1.1.3-1_s390x.deb) ...
+Selecting previously unselected package libmpc3:s390x.
+Unpacking libmpc3:s390x (from .../libmpc3_1.0.1-1_s390x.deb) ...
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+Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_s390x.deb) ...
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+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
+Preparing to replace libstdc++6-4.6-dev 4.6.3-15 (using .../libstdc++6-4.6-dev_4.6.4-2_s390x.deb) ...
Unpacking replacement libstdc++6-4.6-dev ...
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+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.3-15 (using .../gcc-4.6_4.6.4-2_s390x.deb) ...
Unpacking replacement gcc-4.6 ...
-Preparing to replace cpp-4.6 4.6.3-1 (using .../cpp-4.6_4.6.3-3_s390x.deb) ...
+Preparing to replace cpp-4.6 4.6.3-15 (using .../cpp-4.6_4.6.4-2_s390x.deb) ...
Unpacking replacement cpp-4.6 ...
-Preparing to replace gcc-4.6-base:s390x 4.6.3-1 (using .../gcc-4.6-base_4.6.3-3_s390x.deb) ...
+Preparing to replace gcc-4.6-base:s390x 4.6.3-15 (using .../gcc-4.6-base_4.6.4-2_s390x.deb) ...
Unpacking replacement gcc-4.6-base:s390x ...
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Unpacking html2text (from .../html2text_1.3.2a-15+b1_s390x.deb) ...
+Selecting previously unselected package libasprintf-dev:s390x.
+Unpacking libasprintf-dev:s390x (from .../libasprintf-dev_0.18.1.1-10_s390x.deb) ...
+Selecting previously unselected package libgettextpo-dev:s390x.
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-Preparing to replace gcc 4:4.6.3-3 (using .../gcc_4%3a4.6.3-4_s390x.deb) ...
-Removing old gcc doc directory.
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+Unpacking debhelper (from .../debhelper_9.20130516_all.deb) ...
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+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.4-2_s390x.deb) ...
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+Unpacking gfortran (from .../gfortran_4%3a4.6.3-8_s390x.deb) ...
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+Unpacking libtinfo-dev:s390x (from .../libtinfo-dev_5.9+20130504-1_s390x.deb) ...
+Selecting previously unselected package libncurses5-dev:s390x.
+Unpacking libncurses5-dev:s390x (from .../libncurses5-dev_5.9+20130504-1_s390x.deb) ...
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+Unpacking libpcre3-dev:s390x (from .../libpcre3-dev_1%3a8.31-2_s390x.deb) ...
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+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_s390x.deb) ...
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+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_s390x.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.15.0-1_s390x.deb) ...
+Unpacking r-base-core (from .../r-base-core_3.0.1-1_s390x.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.15.0-1_all.deb) ...
-Setting up libgomp1:s390x (4.7.0-3) ...
-Setting up libpipeline1:s390x (1.2.1-1) ...
-Setting up libmagic1:s390x (5.11-1) ...
-Setting up libpcre3:s390x (1:8.30-4) ...
-Setting up libexpat1:s390x (2.1.0-1) ...
-Setting up libfreetype6:s390x (2.4.9-1) ...
-Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3.1) ...
-Setting up libfontconfig1:s390x (2.8.0-3.1) ...
-Setting up libpixman-1-0:s390x (0.24.4-1) ...
-Setting up libpng12-0:s390x (1.2.49-1) ...
+Unpacking r-base-dev (from .../r-base-dev_3.0.1-1_all.deb) ...
+Setting up libc-dev-bin (2.17-3) ...
+Setting up libc6-dev:s390x (2.17-3) ...
+Setting up libpipeline1:s390x (1.2.3-1) ...
+Setting up groff-base (1.22.2-2) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.3-6) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:s390x (0.18.1.1-10) ...
+Setting up libmagic1:s390x (1:5.14-1) ...
+Setting up libpcre3:s390x (1:8.31-2) ...
+Setting up libxml2:s390x (2.8.0+dfsg1-7+nmu1) ...
+Setting up libexpat1:s390x (2.1.0-3) ...
+Setting up libfreetype6:s390x (2.4.9-1.1) ...
+Setting up ucf (3.0025+nmu3) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:s390x (2.9.0-7.1) ...
+Setting up libpixman-1-0:s390x (0.26.0-4) ...
+Setting up libpng12-0:s390x (1.2.49-4) ...
Setting up libxau6:s390x (1:1.0.7-1) ...
-Setting up libxdmcp6:s390x (1:1.1.0-4) ...
-Setting up libxcb1:s390x (1.8.1-1) ...
-Setting up libx11-data (2:1.4.4-4) ...
-Setting up libx11-6:s390x (2:1.4.4-4) ...
-Setting up libxcb-render0:s390x (1.8.1-1) ...
-Setting up libxcb-shm0:s390x (1.8.1-1) ...
-Setting up libxrender1:s390x (1:0.9.6-2) ...
-Setting up libcairo2:s390x (1.12.0-2) ...
-Setting up libffi5:s390x (3.0.10-3+b1) ...
-Setting up libglib2.0-0:s390x (2.32.0-4) ...
+Setting up libxdmcp6:s390x (1:1.1.1-1) ...
+Setting up libxcb1:s390x (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:s390x (2:1.5.0-1) ...
+Setting up libxcb-render0:s390x (1.8.1-2) ...
+Setting up libxcb-shm0:s390x (1.8.1-2) ...
+Setting up libxext6:s390x (2:1.3.1-2) ...
+Setting up libxrender1:s390x (1:0.9.7-1) ...
+Setting up libcairo2:s390x (1.12.14-4) ...
+Setting up libffi6:s390x (3.0.13-4) ...
+Setting up libglib2.0-0:s390x (2.36.1-2build1) ...
No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-7) ...
-Setting up libcroco3:s390x (0.6.5-1) ...
-Setting up libdatrie1:s390x (0.2.5-3) ...
-Setting up libgfortran3:s390x (4.7.0-3) ...
-Setting up x11-common (1:7.6+12) ...
+Setting up libcroco3:s390x (0.6.8-2) ...
+Setting up libdatrie1:s390x (0.2.6-2) ...
+Setting up libunistring0:s390x (0.9.3-5+b1) ...
+Setting up libgettextpo0:s390x (0.18.1.1-10) ...
+Setting up gcc-4.8-base:s390x (4.8.0-7) ...
+Setting up libgfortran3:s390x (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6:s390x (2:1.0.8-2) ...
Setting up libjpeg8:s390x (8d-1) ...
-Setting up libthai-data (0.1.17-1) ...
-Setting up libthai0:s390x (0.1.17-1) ...
-Setting up libxft2:s390x (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3.1) ...
-Cleaning up old fontconfig caches... done.
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:s390x (0.1.19-2) ...
+Setting up libxft2:s390x (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
Regenerating fonts cache... done.
Setting up libpango1.0-0:s390x (1.30.0-1) ...
-Setting up libpcrecpp0:s390x (1:8.30-4) ...
+Setting up libpaper1:s390x (1.1.24+nmu2) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpcrecpp0:s390x (1:8.31-2) ...
Setting up libsm6:s390x (2:1.2.1-2) ...
-Setting up libtiff4:s390x (3.9.6-2) ...
-Setting up libunistring0:s390x (0.9.3-5+b1) ...
-Setting up libxext6:s390x (2:1.3.0-3) ...
-Setting up libxss1:s390x (1:1.2.1-2) ...
-Setting up libxt6:s390x (1:1.1.1-2) ...
-Setting up bsdmainutils (9.0.1) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
-Building database of manual pages ...
-Setting up gcc-4.6-base:s390x (4.6.3-3) ...
-Setting up cpp-4.6 (4.6.3-3) ...
-Setting up gcc-4.6 (4.6.3-3) ...
-Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-5+b1) ...
-Setting up cdbs (0.4.109) ...
-Setting up cpp (4:4.6.3-4) ...
+Setting up libjbig0:s390x (2.0-2) ...
+Setting up libtiff5:s390x (4.0.2-6) ...
+Setting up libxss1:s390x (1:1.2.2-1) ...
+Setting up libxt6:s390x (1:1.1.3-1) ...
+Setting up libmpc3:s390x (1.0.1-1) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
+Setting up gcc-4.6-base:s390x (4.6.4-2) ...
+Setting up cpp-4.6 (4.6.4-2) ...
+Setting up gcc-4.6 (4.6.4-2) ...
Setting up html2text (1.3.2a-15+b1) ...
-Setting up gettext (0.18.1.1-5+b1) ...
+Setting up libasprintf-dev:s390x (0.18.1.1-10) ...
+Setting up libgettextpo-dev:s390x (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120410) ...
-Setting up dpatch (2.0.35) ...
-Setting up gcc (4:4.6.3-4) ...
-Setting up gfortran-4.6 (4.6.3-3) ...
-Setting up gfortran (4:4.6.3-4) ...
-update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev:s390x (1.0.6-1) ...
+Setting up debhelper (9.20130516) ...
+Setting up gfortran-4.6 (4.6.4-2) ...
+Setting up gfortran (4:4.6.3-8) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:s390x (1.0.6-4) ...
Setting up libjpeg8-dev:s390x (8d-1) ...
-Setting up liblapack3gf (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev:s390x (5.9-6) ...
-Setting up libncurses5-dev (5.9-6) ...
-Setting up libpaper1 (1.1.24+nmu1) ...
-
-Creating config file /etc/papersize with new version
-Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcre3-dev (1:8.30-4) ...
-Setting up zlib1g-dev:s390x (1:1.2.6.dfsg-2) ...
-Setting up libpng12-dev (1.2.49-1) ...
-Setting up libreadline6-dev:s390x (6.2-8+b1) ...
-Setting up libreadline-dev:s390x (6.2-8+b1) ...
-Setting up zip (3.0-4) ...
-Setting up unzip (6.0-6) ...
-Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
-Setting up tcl8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.15.0-1) ...
-Setting R_PAPERSIZE_USER default to 'a4'
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:s390x (5.9+20130504-1) ...
+Setting up libncurses5-dev:s390x (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:s390x (1:8.31-2) ...
+Setting up zlib1g-dev:s390x (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:s390x (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:s390x (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.1-1) ...
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.15.0-1) ...
-Setting up g++-4.6 (4.6.3-3) ...
-Setting up libstdc++6-4.6-dev (4.6.3-3) ...
+Setting up r-base-dev (3.0.1-1) ...
+Setting up g++-4.6 (4.6.4-2) ...
+Setting up libstdc++6-4.6-dev (4.6.4-2) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 13 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 26 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-s390x s390x (s390x)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-3 gcc-4.6_4.6.3-3 libc6-dev_2.13-27 libstdc++6_4.7.0-3 libstdc++6-4.6-dev_4.6.3-3 linux-libc-dev_3.2.13-1
-Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 cdbs_0.4.109 coreutils_8.13-3.1 cpp_4:4.6.3-4 cpp-4.6_4.6.3-3 dash_0.5.7-3 debconf_1.5.42 debconf-i18n_1.5.42 debfoster_2.7-1.1+b1 debhelper_9.20120410 debian-archive-keyring_2010.08.28 debianutils_4.3 diffutils_1:3.2-2 dpatch_2.0.35 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-1 e2fsprogs_1.42.2-1 fakeroot_1.18.2-1 file_5.11-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.3-3 g++-4.6_4.6.3-3 gcc_4:4.6.3-4 gcc-4.6_4.6.3-3 gcc-4.6-base_4.6.3-3 gcc-4.7-base_4.7.0-3 gettext_0.18.1.1-5+b1 gettext-base_0.18.1.1-5+b1 gfortran_4:4.6.3-4 gfortran-4.6_4.6.3-3 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.10-1 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15+b1 initscripts_2.88dsf-22.1 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-27 libc-dev-bin_2.13-27 libc6_2.13-27 libc6-dev_2.13-27 libcairo2_1.12.0-2 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-1 libcroco3_0.6.5-1 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libexpat1_2.1.0-1 libffi5_3.0.10-3+b1 libfile-fcntllock-perl_0.14-1 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8+b1 libgcc1_1:4.7.0-3 libgdbm3_1.8.3-10+b1 libgfortran3_4.7.0-3 libglib2.0-0_2.32.0-4 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-3 libice6_2:1.0.8-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7+b2 liblzma5_5.1.1alpha+20110809-3+b1 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4+b1 libmpfr4_3.1.0-4 libncurses5_5.9-6 libncurses5-dev_5.9-6 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_1:8.30-4 libpcre3-dev_1:8.30-4 libpcrecpp0_1:8.30-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.49-1 libpng12-dev_1.2.49-1 libreadline-dev_6.2-8+b1 libreadline6_6.2-8+b1 libreadline6-dev_6.2-8+b1 libselinux1_2.1.9-4 libsemanage-common_2.1.6-5 libsemanage1_2.1.6-5 libsepol1_2.1.4-2 libslang2_2.2.4-7 libsm6_2:1.2.1-2 libss2_1.42.2-1 libstdc++6_4.7.0-3 libstdc++6-4.6-dev_4.6.3-3 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b2 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-6 libtinfo5_5.9-6 libunistring0_0.9.3-5+b1 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.2.13-1 login_1:4.1.5-1 lsb-base_3.2+Debian31 make_3.81-8.1+b1 man-db_2.6.1-2 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-27 ncurses-base_5.9-4 ncurses-bin_5.9-6 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 r-base-core_2.15.0-1 r-base-dev_2.15.0-1 readline-common_6.2-8 sed_4.2.1-9+b1 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2012b-1 ucf_3.0025+nmu2 unzip_6.0-6 util-linux_2.20.1-4 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3+b1 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.6_4.6.4-2 gcc-4.6_4.6.4-2 libc6-dev_2.17-3 libstdc++6_4.7.2-5 libstdc++6-4.6-dev_4.6.4-2 linux-libc-dev_3.2.41-2
+Package versions: apt_0.9.7.8+b1 base-files_7.1 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.20-3 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2 dash_0.5.7-3 debconf_1.5.49 debconf-i18n_1.5.49 debfoster_2.7-1.2 debhelper_9.20130516 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-1 findutils_4.4.2-5 fontconfig_2.9.0-7.1 fontconfig-config_2.9.0-7.1 fonts-dejavu-core_2.33+svn2514-3 g++_4:4.6.3-8 g++-4.6_4.6.4-2 gcc_4:4.6.3-8 gcc-4.6_4.6.4-2 gcc-4.6-base_4.6.4-2 gcc-4.7-base_4.7.2-5 gcc-4.8-base_4.8.0-7 gettext_0.18.1.1-10 gettext-base_0.18.1.1-10 gfortran_4:4.6.3-8 gfortran-4.6_4.6.4-2 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.14-1 groff-base_1.22.2-2 gzip_1.5-1.1 hostname_3.12 html2text_1.3.2a-15+b1 initscripts_2.88dsf-41 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7.8+b1 libasprintf-dev_0.18.1.1-10 libasprintf0c2_0.18.1.1-10 libattr1_1:2.4.46-8 libblas-dev_1.2.20110419-5 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.3 libbz2-1.0_1.0.6-4 libbz2-dev_1.0.6-4 libc-bin_2.13-38 libc-dev-bin_2.17-3 libc6_2.17-3 libc6-dev_2.17-3 libcairo2_1.12.14-4 libclass-isa-perl_0.36-5 libcomerr2_1.42.5-1.1 libcroco3_0.6.8-2 libdatrie1_0.2.6-2 libdb5.1_5.1.29-5 libdpkg-perl_1.16.10 libexpat1_2.1.0-3 libffi6_3.0.13-4 libfile-fcntllock-perl_0.14-2 libfontconfig1_2.9.0-7.1 libfreetype6_2.4.9-1.1 libgc1c2_1:7.1-9.1 libgcc1_1:4.7.2-5 libgdbm3_1.8.3-11 libgettextpo-dev_0.18.1.1-10 libgettextpo0_0.18.1.1-10 libgfortran3_4.8.0-7 libglib2.0-0_2.36.1-2build1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.2-5 libice6_2:1.0.8-2 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.4.2+dfsg-1 liblapack3_3.4.2+dfsg-1 liblocale-gettext-perl_1.05-7+b2 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-1 libmount1_2.20.1-5.3 libmpc2_0.9-4+b1 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libncurses5_5.9+20130504-1 libncurses5-dev_5.9+20130504-1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.31-2 libpcre3-dev_1:8.31-2 libpcrecpp0_1:8.31-2 libpipeline1_1.2.3-1 libpixman-1-0_0.26.0-4 libpng12-0_1.2.49-4 libpng12-dev_1.2.49-4 libreadline-dev_6.2+dfsg-0.1 libreadline6_6.2+dfsg-0.1 libreadline6-dev_6.2+dfsg-0.1 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libss2_1.42.5-1.1 libstdc++6_4.7.2-5 libstdc++6-4.6-dev_4.6.4-2 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b2 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.19-2 libthai0_0.1.19-2 libtiff5_4.0.2-6 libtimedate-perl_1.2000-1 libtinfo-dev_5.9+20130504-1 libtinfo5_5.9+20130504-1 libunistring0_0.9.3-5+b1 libusb-0.1-4_2:0.1.12-23+nmu1 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.3 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-2 libxcb-shm0_1.8.1-2 libxcb1_1.8.1-2 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-7+nmu1 libxrender1_1:0.9.7-1 libxss1_1:1.2.2-1 libxt6_1:1.1.3-1 linux-libc-dev_3.2.41-2 login_1:4.1.5.1-1 lsb-base_4.1+Debian9 make_3.81-8.2 man-db_2.6.3-6 mawk_1.3.3-17 mount_2.20.1-5.3 multiarch-support_2.13-38 ncurses-base_5.9-10 ncurses-bin_5.9+20130504-1 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-21 perl-base_5.14.2-21 perl-modules_5.14.2-21 po-debconf_1.0.16+nmu2 r-base-core_3.0.1-1 r-base-dev_3.0.1-1 readline-common_6.2+dfsg-0.1 sed_4.2.1-10 sensible-utils_0.0.7 sudo_1.8.5p2-1+nmu1 sysv-rc_2.88dsf-41 sysvinit_2.88dsf-41 sysvinit-utils_2.88dsf-41 tar_1.26+dfsg-5 tcl8.5_8.5.11-2 tk8.5_8.5.11-2 ttf-dejavu-core_2.33+svn2514-3 tzdata_2013b-2 ucf_3.0025+nmu3 unzip_6.0-9 util-linux_2.20.1-5.3 x11-common_1:7.7+3 xdg-utils_1.1.0~rc1+git20111210-7 xz-utils_5.1.1alpha+20120614-2 zip_3.0-7 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -601,12 +647,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Apr 12 02:45:32 2012 UTC using RSA key ID 2295D502
+gpgv: Signature made Thu May 16 14:46:42 2013 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.12.0~dfsg-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.12.0~dfsg
-dpkg-source: info: unpacking r-bioc-limma_3.12.0~dfsg.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.12.0~dfsg-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.16.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.16.3~dfsg
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg-1.debian.tar.gz
Check disc space
────────────────
@@ -616,27 +662,12 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.12.0~dfsg-1
- dpkg-source --before-build r-bioc-limma-3.12.0~dfsg
+dpkg-buildpackage: source version 3.16.3~dfsg-1
+ dpkg-source --before-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: host architecture s390x
fakeroot debian/rules clean
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
-/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg'
-if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "reverse-patches" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-for dir in debian/patches ; do \
- rm -f $dir/*.log ; \
- done
dh_clean
rm -f debian/r-bioc-limma.substvars
rm -f debian/r-bioc-limma.*.debhelper
@@ -657,26 +688,9 @@ if test -d src; then \
fi
rm -f config.log config.status
debian/rules build-arch
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
-/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg'
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg'
-if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg'
fakeroot debian/rules binary-arch
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
@@ -688,26 +702,26 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
install -d debian/r-bioc-limma/usr/lib/R/site-library
-echo "R:Depends=r-base-core (>= 2.15.0-1)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 3.0.1-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fPIC -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg/src'
-installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/src'
+installing to /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -715,22 +729,27 @@ installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma
*** installing help indices
** building package indices
** installing vignettes
- 'limma.Rnw'
** testing if installed package can be loaded
-
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/CITATION
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/doc/*
dh_installdocs -pr-bioc-limma
install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/doc/r-bioc-limma \;
+ cp -a debian/README.test debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ chown -R 0:0 debian/r-bioc-limma/usr/share/doc
+ chmod -R go=rX debian/r-bioc-limma/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-limma/usr/share/doc
install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
@@ -762,9 +781,9 @@ dh_strip -pr-bioc-limma
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
cd debian/r-bioc-limma
- chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
- gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
- cd '/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly/r-bioc-limma-3.12.0~dfsg'
+ chmod a-x usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ gzip -9nf usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save usr/share/doc/r-bioc-limma/tests/limma-Tests.R usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog
+ cd '/build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx/r-bioc-limma-3.16.3~dfsg'
dh_fixperms -pr-bioc-limma
find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -794,62 +813,79 @@ dh_md5sums -pr-bioc-limma
chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
dpkg-deb --build debian/r-bioc-limma ..
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.12.0~dfsg-1_s390x.deb'.
- dpkg-genchanges -B -ms390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../r-bioc-limma_3.12.0~dfsg-1_s390x.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.16.3~dfsg-1_s390x.deb'.
+ dpkg-genchanges -B -ms390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../r-bioc-limma_3.16.3~dfsg-1_s390x.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.12.0~dfsg
+ dpkg-source --after-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120412-0334
+Build finished at 20130517-1414
-r-bioc-limma_3.12.0~dfsg-1_s390x.changes:
+r-bioc-limma_3.16.3~dfsg-1_s390x.changes:
Format: 1.8
-Date: Thu, 12 Apr 2012 11:40:40 +0900
+Date: Thu, 16 May 2013 15:16:13 +0200
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: s390x
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
Distribution: sid
Urgency: low
Maintainer: s390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.12.0~dfsg-1) unstable; urgency=low
+ r-bioc-limma (3.16.3~dfsg-1) unstable; urgency=low
.
[ Charles Plessy ]
- 2d3420e Imported Upstream version 3.12.0~dfsg
- 4bbb8e4 Document LIMMA's copyright as a whole.
+ ff8c6db Imported Upstream version 3.12.1~dfsg
+ b4f097e Effective license is GPL-2, without the '+', as R is GPL-2.
.
[ Andreas Tille ]
- 8a61a4c Obtain references from inst/CITATION
+ * Imported new upstream version 3.16.3~dfsg
+ * debian/control
+ - added myself to Uploaders
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - Fake normalisation as it is done by `cme fix dpkg-control`
+ (the command did actually no change - the control file was
+ brought into shape manually)
+ - Removed versioned dependency of r-base-dev
+ * debian/copyright:
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - checked new upstream version and bumped version number
+ - Add years to Copyright fields
+ * debian/rules: Remove executable flag from doc files
+ * debian/source/format: Add explicit source format specification
Checksums-Sha1:
- 587b528418fc8e4e3840891e7934552c524a95c2 809774 r-bioc-limma_3.12.0~dfsg-1_s390x.deb
+ 7cca32fa82c32154b9646b83f2c90c3707b99ae6 1617786 r-bioc-limma_3.16.3~dfsg-1_s390x.deb
Checksums-Sha256:
- f7d1fac1135b8627276fbd2f8a988c7f26c6b0b8c464854fd5bce9b856d734c9 809774 r-bioc-limma_3.12.0~dfsg-1_s390x.deb
+ 51760bf4b700252d1a209110a5e1c788b419f0b9375e1e6caca037160d56a7fe 1617786 r-bioc-limma_3.16.3~dfsg-1_s390x.deb
Files:
- b931a98b35a4f4a330435e9c6fccd852 809774 gnu-r optional r-bioc-limma_3.12.0~dfsg-1_s390x.deb
+ 4f33d1f52ae5d9b7fb9a35af20abcdd1 1617786 gnu-r optional r-bioc-limma_3.16.3~dfsg-1_s390x.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.12.0~dfsg-1_s390x.deb
+r-bioc-limma_3.16.3~dfsg-1_s390x.deb
────────────────────────────────────
new debian package, version 2.0.
- size 809774 bytes: control archive= 1538 bytes.
- 774 bytes, 16 lines control
- 2290 bytes, 30 lines md5sums
+ size 1617786 bytes: control archive= 1667 bytes.
+ 773 bytes, 16 lines control
+ 2621 bytes, 34 lines md5sums
Package: r-bioc-limma
- Version: 3.12.0~dfsg-1
+ Version: 3.16.3~dfsg-1
Architecture: s390x
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 985
- Depends: libc6 (>= 2.13), r-base-core (>= 2.15.0-1)
+ Installed-Size: 1847
+ Depends: libc6 (>= 2.2), r-base-core (>= 3.0.1-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -861,51 +897,56 @@ r-bioc-limma_3.12.0~dfsg-1_s390x.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/lib/
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/lib/R/
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 9754 2012-04-12 03:34 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 383 2012-04-12 03:34 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 202046 2012-04-12 03:34 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3828 2012-04-12 03:34 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 1179 2012-04-12 03:34 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 35015 2012-04-12 03:34 ./usr/lib/R/site-library/limma/html/00Index.html
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 10632 2012-04-12 03:34 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1367 2012-04-12 03:34 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 472900 2012-04-12 03:34 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3345 2012-04-12 03:34 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 2431 2012-04-12 03:34 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 6317 2012-04-12 03:34 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 1901 2012-04-12 03:34 ./usr/lib/R/site-library/limma/NAMESPACE
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 1711 2012-04-12 03:34 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rwxr-xr-x root/root 673 2012-04-12 03:34 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 42743 2012-04-12 03:34 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 91993 2012-04-12 03:34 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rw-r--r-- root/root 966 2012-04-12 03:34 ./usr/lib/R/site-library/limma/DESCRIPTION
--rw-r--r-- root/root 3989 2012-04-12 03:34 ./usr/lib/R/site-library/limma/NEWS.Rd
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 521 2012-04-12 03:34 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 220 2012-04-12 03:34 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 5727 2012-04-12 03:34 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2943 2012-04-12 03:34 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 1050 2012-04-12 03:34 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 6157 2012-04-12 03:34 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rwxr-xr-x root/root 1230 2012-04-12 03:34 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/share/
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-04-12 03:34 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 264 2012-04-12 03:34 ./usr/share/doc/r-bioc-limma/README.Debian
--rw-r--r-- root/root 27996 2012-03-30 22:32 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 683 2012-04-12 03:34 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 2457 2012-04-12 03:34 ./usr/share/doc/r-bioc-limma/copyright
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 10085 2013-05-17 14:14 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 1056 2013-05-17 14:14 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 206552 2013-05-17 14:14 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 4120 2013-05-17 14:14 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2013-05-17 14:14 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 37337 2013-05-17 14:14 ./usr/lib/R/site-library/limma/html/00Index.html
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10632 2013-05-17 14:14 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1398 2013-05-17 14:14 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 494828 2013-05-17 14:14 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3414 2013-05-17 14:14 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 2567 2013-05-17 14:14 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 6703 2013-05-17 14:14 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2046 2013-05-17 14:14 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 1711 2013-05-17 14:14 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 673 2013-05-17 14:14 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 806089 2013-05-17 14:14 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 45597 2013-05-17 14:14 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 102936 2013-05-17 14:14 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 987 2013-05-17 14:14 ./usr/lib/R/site-library/limma/DESCRIPTION
+-rw-r--r-- root/root 11214 2013-05-17 14:14 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 541 2013-05-17 14:14 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 219 2013-05-17 14:14 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 5944 2013-05-17 14:14 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 3089 2013-05-17 14:14 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 1063 2013-05-17 14:14 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 6375 2013-05-17 14:14 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 963 2013-05-17 14:14 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/share/doc/r-bioc-limma/
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/share/doc/r-bioc-limma/tests/
+-rw-r--r-- root/root 14649 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save.gz
+-rw-r--r-- root/root 2097 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.R.gz
+-rw-r--r-- root/root 437 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.test
+-rw-r--r-- root/root 264 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 31097 2013-05-02 00:02 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 1153 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 2605 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/copyright
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -919,7 +960,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-s390x-sbuild-05dddfa4-21bf-4e7f-a8c3-6f6286a6040f/sid-s390x-sbuild/build/buildd-r-bioc-limma_3.12.0~dfsg-1-s390x-h1hFly
+Purging /var/lib/schroot/mount/sid-s390x-sbuild-05de5256-6c26-4dd9-b80b-c80fe40f1f51/sid-s390x-sbuild/build/buildd-r-bioc-limma_3.16.3~dfsg-1-s390x-grlQTx
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -927,18 +968,18 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: s390x
-Build-Space: 3272
-Build-Time: 15
+Build-Space: 5884
+Build-Time: 9
Distribution: sid
-Install-Time: 28
-Job: r-bioc-limma_3.12.0~dfsg-1
+Install-Time: 44
+Job: r-bioc-limma_3.16.3~dfsg-1
Package: r-bioc-limma
-Package-Time: 76
-Source-Version: 3.12.0~dfsg-1
-Space: 3272
+Package-Time: 87
+Source-Version: 3.16.3~dfsg-1
+Space: 5884
Status: successful
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120412-0334
-Build needed 00:01:16, 3272k disc space
-Signature with key 'BE1C5586' requested:
+Finished at 20130517-1414
+Build needed 00:01:27, 5884k disc space
+Signature with key '06DAB0BE' requested:
diff --git a/sparc.log b/sparc.log
index 616f55a..e2c059b 100644
--- a/sparc.log
+++ b/sparc.log
@@ -1,73 +1,64 @@
-From buildd at schroeder.debian.org Thu Apr 12 03:38:13 2012
-Return-path: <buildd at schroeder.debian.org>
+From buildd at lebrun.debian.org Thu May 16 23:52:09 2013
+Return-path: <buildd at lebrun.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
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CN=merikanto.debian.org,
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at schroeder.debian.org>)
- id 1SIArM-0007hF-Qh
- for logs at buildd.debian.org; Thu, 12 Apr 2012 03:38:12 +0000
-Received: from [2001:b68:ff:5:203:baff:fe5a:53a5] (helo=schroeder.debian.org)
+ (Exim 4.72) (envelope-from <buildd at lebrun.debian.org>)
+ id 1Ud7xx-0001oT-4q
+ for logs at buildd.debian.org; Thu, 16 May 2013 23:52:09 +0000
+Received: from [2001:b68:ff:5:203:baff:fe59:abad] (helo=lebrun.debian.org)
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- CN=schroeder.debian.org,
- EMAIL=hostmaster at schroeder.debian.org (verified)
+ CN=lebrun.debian.org, EMAIL=hostmaster at lebrun.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at schroeder.debian.org>)
- id 1SIArM-0003fG-16
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-Message-Id: <E1SIArK-0004nJ-5x at schroeder.debian.org>
+ (Exim 4.72) (envelope-from <buildd at lebrun.debian.org>)
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+ for logs at buildd.debian.org; Thu, 16 May 2013 23:52:08 +0000
+Received: from buildd by lebrun.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at lebrun.debian.org>)
+ id 1Ud7xu-0001f1-IQ; Thu, 16 May 2013 23:52:06 +0000
+Message-Id: <E1Ud7xu-0001f1-IQ at lebrun.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Thu, 12 Apr 2012 03:38:10 +0000
-From: buildd on schroeder <buildd at schroeder.debian.org>
-To: logs at buildd.debian.org,buildd-admin at schroeder.debian.org
-Subject: Log for successful build of r-bioc-limma_3.12.0~dfsg-1 on sparc
+Date: Thu, 16 May 2013 23:52:06 +0000
+From: buildd on lebrun <buildd at lebrun.debian.org>
+To: logs at buildd.debian.org,buildd-admin at lebrun.debian.org
+Subject: Log for successful build of r-bioc-limma_3.16.3~dfsg-1 on sparc
(dist=sid)
-Key-Id: 24E4F805
+Key-Id: B16CDE7F
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on schroeder.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on lebrun.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.12.0~dfsg-1 (sparc) 12 Apr 2012 03:32 ║
+║ r-bioc-limma 3.16.3~dfsg-1 (sparc) 16 May 2013 23:45 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.12.0~dfsg-1
-Source Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
+Source Version: 3.16.3~dfsg-1
Architecture: sparc
-Get:1 http://ftp.hr.debian.org unstable InRelease [208 kB]
-Get:2 http://incoming.debian.org unstable InRelease [208 kB]
-Get:3 http://ftp.hr.debian.org unstable/main Sources [6216 kB]
-Get:4 http://ftp.hr.debian.org unstable/contrib Sources [54.5 kB]
-Get:5 http://ftp.hr.debian.org unstable/non-free Sources [97.8 kB]
-Ign http://incoming.debian.org InRelease
-Get:6 http://incoming.debian.org Release.gpg [836 B]
-Get:7 http://ftp.hr.debian.org unstable/main sparc Packages [5815 kB]
-Get:8 http://incoming.debian.org Release [1601 B]
-Get:9 http://incoming.debian.org unstable/main Sources [6221 kB]
-Get:10 http://ftp.hr.debian.org unstable/contrib sparc Packages [36.7 kB]
-Ign http://ftp.hr.debian.org unstable/contrib TranslationIndex
-Get:11 http://ftp.hr.debian.org unstable/main TranslationIndex [2223 B]
-Get:12 http://ftp.hr.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:13 http://ftp.hr.debian.org unstable/main Translation-en [3936 kB]
-Get:14 http://incoming.debian.org unstable/contrib Sources [54.5 kB]
-Get:15 http://incoming.debian.org unstable/non-free Sources [97.7 kB]
-Get:16 http://incoming.debian.org unstable/main sparc Packages [5815 kB]
-Get:17 http://incoming.debian.org unstable/contrib sparc Packages [36.7 kB]
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:18 http://incoming.debian.org unstable/main TranslationIndex [2223 B]
-Get:19 http://incoming.debian.org Sources [42.9 kB]
-Get:20 http://incoming.debian.org Packages [682 kB]
-Get:21 http://incoming.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:22 http://incoming.debian.org unstable/main Translation-en [3936 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 33.5 MB in 37s (902 kB/s)
+Get:1 http://debian.carnet.hr unstable InRelease [205 kB]
+Get:2 http://incoming.debian.org unstable InRelease [205 kB]
+Get:3 http://debian.carnet.hr unstable/main Sources [6731 kB]
+Get:4 http://incoming.debian.org buildd-unstable InRelease [111 kB]
+Get:5 http://incoming.debian.org unstable/main Sources [6731 kB]
+Get:6 http://debian.carnet.hr unstable/contrib Sources [53.7 kB]
+Get:7 http://debian.carnet.hr unstable/non-free Sources [103 kB]
+Get:8 http://debian.carnet.hr unstable/main sparc Packages [6230 kB]
+Get:9 http://debian.carnet.hr unstable/contrib sparc Packages [37.0 kB]
+Get:10 http://incoming.debian.org unstable/contrib Sources [53.7 kB]
+Get:11 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:12 http://incoming.debian.org unstable/main sparc Packages [6230 kB]
+Get:13 http://incoming.debian.org unstable/contrib sparc Packages [37.0 kB]
+Get:14 http://incoming.debian.org buildd-unstable/main Sources [120 kB]
+Get:15 http://incoming.debian.org buildd-unstable/contrib Sources [1919 B]
+Get:16 http://incoming.debian.org buildd-unstable/non-free Sources [2390 B]
+Get:17 http://incoming.debian.org buildd-unstable/main sparc Packages [91.4 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib sparc Packages [14 B]
+Fetched 27.0 MB in 1min 3s (429 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -88,11 +79,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 288 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (dsc) [2030 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (tar) [283 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.12.0~dfsg-1 (diff) [3098 B]
-Fetched 288 kB in 1s (175 kB/s)
+Need to get 1058 kB of source archives.
+Get:1 http://debian.carnet.hr/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (dsc) [1409 B]
+Get:2 http://debian.carnet.hr/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (tar) [1052 kB]
+Get:3 http://debian.carnet.hr/debian/ unstable/main r-bioc-limma 3.16.3~dfsg-1 (diff) [4167 B]
+Fetched 1058 kB in 0s (1251 kB/s)
Download complete and in download only mode
Check arch
@@ -105,507 +96,571 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.2-1)
+build-essential: already installed (11.6)
+fakeroot: already installed (1.18.4-2)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 20 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 33 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 20 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 33 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, libc6-dev-sparc64, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222)
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, libc6-dev-sparc64, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev
Checking for already installed dependencies...
-base-files: already installed (6.7)
-base-passwd: already installed (3.5.24)
-bash: already installed (4.2-2)
-coreutils: already installed (8.13-3.1)
+base-files: already installed (7.2)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2+dfsg-1)
+bsdutils: already installed (1:2.20.1-5.3)
+coreutils: already installed (8.13-3.3)
dash: already installed (0.5.7-3)
-debianutils: already installed (4.3)
-diffutils: already installed (1:3.2-2)
-dpkg: already installed (1.16.2)
-e2fsprogs: already installed (1.42.2-1)
-findutils: already installed (4.4.2-4)
-grep: already installed (2.10-1)
-gzip: already installed (1.4-5)
-hostname: already installed (3.11)
-ncurses-base: already installed (5.9-5)
-ncurses-bin: already installed (5.9-5)
-perl-base: already installed (5.14.2-9)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.5-1)
-sysvinit-utils: already installed (2.88dsf-22.1)
-sysvinit: already installed (2.88dsf-22.1)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-4)
-mount: already installed (2.20.1-4)
-util-linux: already installed (2.20.1-4)
-libc6-dev: already installed (2.13-27)
-libc6-dev-sparc64: already installed (2.13-27)
-gcc: already installed (4:4.6.3-4 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-4 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.2 >= 1.13.5 is satisfied)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1.1)
+findutils: already installed (4.4.2-5)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+libc-bin: already installed (2.13-38)
+login: already installed (1:4.1.5.1-1)
+mount: already installed (2.20.1-5.3)
+ncurses-base: already installed (5.9-10)
+ncurses-bin: already installed (5.9-10)
+perl-base: already installed (5.14.2-21)
+sed: already installed (4.2.2-1)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-5)
+util-linux: already installed (2.20.1-5.3)
+libc6-dev: already installed (2.13-38)
+libc6-dev-sparc64: already installed (2.13-38)
+gcc: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120410
+Using default version 9.20130516
cdbs: missing
r-base-dev: missing
-Using default version 2.15.0-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
+The following package was automatically installed and is no longer required:
+ libmpc2
+Use 'apt-get autoremove' to remove it.
The following extra packages will be installed:
- bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
- gcc-4.6 gcc-4.6-base gcc-4.7-base gettext gettext-base gfortran gfortran-4.6
- groff-base html2text intltool-debian libblas-dev libblas3gf libbz2-dev
- libcairo2 libcroco3 libdatrie1 libexpat1 libffi5 libfontconfig1 libfreetype6
- libgcc1 libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8 libjpeg8-dev
- liblapack-dev liblapack3gf libmagic1 libncurses5 libncurses5-dev
+ bsdmainutils cpp-4.6 file fontconfig fontconfig-config fonts-dejavu-core
+ g++-4.6 gcc-4.6 gcc-4.6-base gcc-4.8-base gettext gettext-base gfortran
+ gfortran-4.6 groff-base html2text intltool-debian libasprintf-dev
+ libasprintf0c2 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6 libc6-dev
+ libc6-dev-sparc64 libc6-sparc64 libcairo2 libcroco3 libdatrie1 libexpat1
+ libffi6 libfontconfig1 libfreetype6 libgcc1 libgettextpo-dev libgettextpo0
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjbig0 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3 libmagic1 libmpc3 libncurses5 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0
- libtiff4 libtinfo-dev libtinfo5 libunistring0 libx11-6 libx11-data libxau6
+ libtiff5 libtinfo-dev libtinfo5 libunistring0 libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf r-base-core tcl8.5
- tk8.5 ttf-dejavu-core unzip x11-common xdg-utils zip zlib1g-dev
+ tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
- defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make
+ g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
- binutils-gold gettext-doc gfortran-multilib gfortran-doc
- gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
- ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ libcloog-ppl1 libcloog-ppl0 libppl-c4 libppl12 libppl9 binutils-gold
+ gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib
+ gfortran-4.6-doc libgfortran3-dbg groff glibc-doc ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
- texi2html tclreadline gvfs-bin
+ texi2html tcl-tclreadline gvfs-bin
Recommended packages:
- autotools-dev patchutils autopoint libglib2.0-data shared-mime-info libgpm2
- xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
- x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
- libx11-protocol-perl x11-utils x11-xserver-utils
+ autotools-dev curl wget lynx-cur autopoint manpages-dev gcc-multilib
+ libglib2.0-data shared-mime-info libgpm2 xml-core libmail-sendmail-perl
+ r-recommended r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl
+ libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
- bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
- libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libffi5 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
- libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
- libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
- po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core unzip
- x11-common xdg-utils zip zlib1g-dev
+ bsdmainutils cdbs debhelper file fontconfig fontconfig-config
+ fonts-dejavu-core gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libasprintf-dev libasprintf0c2 libblas-dev
+ libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi6
+ libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0 libgfortran3
+ libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3
+ libmagic1 libmpc3 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
+ libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0
+ libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0
+ libtiff5 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6
+ libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
+ libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5
+ tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
The following packages will be upgraded:
- cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base gcc-4.7-base libgcc1 libgomp1
- libncurses5 libstdc++6 libstdc++6-4.6-dev libtinfo5 ncurses-bin
-12 upgraded, 76 newly installed, 0 to remove and 8 not upgraded.
-Need to get 71.6 MB of archives.
-After this operation, 113 MB of additional disk space will be used.
-Get:1 http://ftp.hr.debian.org/debian/ unstable/main ncurses-bin sparc 5.9-6 [334 kB]
-Get:2 http://ftp.hr.debian.org/debian/ unstable/main libgomp1 sparc 4.7.0-2 [23.0 kB]
-Get:3 http://ftp.hr.debian.org/debian/ unstable/main gcc-4.7-base sparc 4.7.0-2 [139 kB]
-Get:4 http://ftp.hr.debian.org/debian/ unstable/main libstdc++6 sparc 4.7.0-2 [322 kB]
-Get:5 http://ftp.hr.debian.org/debian/ unstable/main libgcc1 sparc 1:4.7.0-2 [30.2 kB]
-Get:6 http://ftp.hr.debian.org/debian/ unstable/main libtinfo5 sparc 5.9-6 [267 kB]
-Get:7 http://ftp.hr.debian.org/debian/ unstable/main libncurses5 sparc 5.9-6 [279 kB]
-Get:8 http://ftp.hr.debian.org/debian/ unstable/main libpipeline1 sparc 1.2.1-1 [35.8 kB]
-Get:9 http://ftp.hr.debian.org/debian/ unstable/main libmagic1 sparc 5.11-1 [249 kB]
-Get:10 http://ftp.hr.debian.org/debian/ unstable/main libpcre3 sparc 1:8.30-4 [246 kB]
-Get:11 http://ftp.hr.debian.org/debian/ unstable/main libexpat1 sparc 2.1.0-1 [131 kB]
-Get:12 http://ftp.hr.debian.org/debian/ unstable/main libfreetype6 sparc 2.4.9-1 [410 kB]
-Get:13 http://ftp.hr.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:14 http://ftp.hr.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3.1 [219 kB]
-Get:15 http://ftp.hr.debian.org/debian/ unstable/main libfontconfig1 sparc 2.8.0-3.1 [274 kB]
-Get:16 http://ftp.hr.debian.org/debian/ unstable/main libpixman-1-0 sparc 0.24.4-1 [373 kB]
-Get:17 http://ftp.hr.debian.org/debian/ unstable/main libpng12-0 sparc 1.2.49-1 [181 kB]
-Get:18 http://ftp.hr.debian.org/debian/ unstable/main libxau6 sparc 1:1.0.7-1 [17.6 kB]
-Get:19 http://ftp.hr.debian.org/debian/ unstable/main libxdmcp6 sparc 1:1.1.0-4 [22.0 kB]
-Get:20 http://ftp.hr.debian.org/debian/ unstable/main libxcb1 sparc 1.8.1-1 [39.7 kB]
-Get:21 http://ftp.hr.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-4 [187 kB]
-Get:22 http://ftp.hr.debian.org/debian/ unstable/main libx11-6 sparc 2:1.4.4-4 [830 kB]
-Get:23 http://ftp.hr.debian.org/debian/ unstable/main libxcb-render0 sparc 1.8.1-1 [15.6 kB]
-Get:24 http://ftp.hr.debian.org/debian/ unstable/main libxcb-shm0 sparc 1.8.1-1 [9692 B]
-Get:25 http://ftp.hr.debian.org/debian/ unstable/main libxrender1 sparc 1:0.9.6-2 [28.8 kB]
-Get:26 http://ftp.hr.debian.org/debian/ unstable/main libcairo2 sparc 1.12.0-2 [849 kB]
-Get:27 http://ftp.hr.debian.org/debian/ unstable/main libffi5 sparc 3.0.10-3 [22.7 kB]
-Get:28 http://ftp.hr.debian.org/debian/ unstable/main libglib2.0-0 sparc 2.32.0-4 [1902 kB]
-Get:29 http://ftp.hr.debian.org/debian/ unstable/main libxml2 sparc 2.7.8.dfsg-7 [819 kB]
-Get:30 http://ftp.hr.debian.org/debian/ unstable/main libcroco3 sparc 0.6.5-1 [135 kB]
-Get:31 http://ftp.hr.debian.org/debian/ unstable/main libdatrie1 sparc 0.2.5-3 [26.1 kB]
-Get:32 http://ftp.hr.debian.org/debian/ unstable/main libgfortran3 sparc 4.7.0-2 [259 kB]
-Get:33 http://ftp.hr.debian.org/debian/ unstable/main x11-common all 1:7.6+12 [283 kB]
-Get:34 http://ftp.hr.debian.org/debian/ unstable/main libice6 sparc 2:1.0.8-2 [56.0 kB]
-Get:35 http://ftp.hr.debian.org/debian/ unstable/main libjpeg8 sparc 8d-1 [137 kB]
-Get:36 http://ftp.hr.debian.org/debian/ unstable/main libthai-data all 0.1.17-1 [205 kB]
-Get:37 http://ftp.hr.debian.org/debian/ unstable/main libthai0 sparc 0.1.17-1 [43.0 kB]
-Get:38 http://ftp.hr.debian.org/debian/ unstable/main libxft2 sparc 2.2.0-3 [55.0 kB]
-Get:39 http://ftp.hr.debian.org/debian/ unstable/main fontconfig sparc 2.8.0-3.1 [332 kB]
-Get:40 http://ftp.hr.debian.org/debian/ unstable/main libpango1.0-0 sparc 1.30.0-1 [422 kB]
-Get:41 http://ftp.hr.debian.org/debian/ unstable/main libpcrecpp0 sparc 1:8.30-4 [123 kB]
-Get:42 http://ftp.hr.debian.org/debian/ unstable/main libsm6 sparc 2:1.2.1-2 [32.1 kB]
-Get:43 http://ftp.hr.debian.org/debian/ unstable/main libtiff4 sparc 3.9.6-2 [187 kB]
-Get:44 http://ftp.hr.debian.org/debian/ unstable/main libunistring0 sparc 0.9.3-5 [416 kB]
-Get:45 http://ftp.hr.debian.org/debian/ unstable/main libxext6 sparc 2:1.3.0-3 [47.5 kB]
-Get:46 http://ftp.hr.debian.org/debian/ unstable/main libxss1 sparc 1:1.2.1-2 [15.9 kB]
-Get:47 http://ftp.hr.debian.org/debian/ unstable/main libxt6 sparc 1:1.1.1-2 [184 kB]
-Get:48 http://ftp.hr.debian.org/debian/ unstable/main bsdmainutils sparc 9.0.1 [205 kB]
-Get:49 http://ftp.hr.debian.org/debian/ unstable/main groff-base sparc 1.21-7 [1123 kB]
-Get:50 http://ftp.hr.debian.org/debian/ unstable/main man-db sparc 2.6.1-2 [1031 kB]
-Get:51 http://ftp.hr.debian.org/debian/ unstable/main g++-4.6 sparc 4.6.3-3 [5546 kB]
-Get:52 http://ftp.hr.debian.org/debian/ unstable/main libstdc++6-4.6-dev sparc 4.6.3-3 [1660 kB]
-Get:53 http://ftp.hr.debian.org/debian/ unstable/main gcc-4.6 sparc 4.6.3-3 [3723 kB]
-Get:54 http://ftp.hr.debian.org/debian/ unstable/main cpp-4.6 sparc 4.6.3-3 [3539 kB]
-Get:55 http://ftp.hr.debian.org/debian/ unstable/main gcc-4.6-base sparc 4.6.3-3 [140 kB]
-Get:56 http://ftp.hr.debian.org/debian/ unstable/main file sparc 5.11-1 [52.7 kB]
-Get:57 http://ftp.hr.debian.org/debian/ unstable/main gettext-base sparc 0.18.1.1-5 [140 kB]
-Get:58 http://ftp.hr.debian.org/debian/ unstable/main cdbs all 0.4.109 [79.4 kB]
-Get:59 http://ftp.hr.debian.org/debian/ unstable/main html2text sparc 1.3.2a-15 [100 kB]
-Get:60 http://ftp.hr.debian.org/debian/ unstable/main gettext sparc 0.18.1.1-5 [1983 kB]
-Get:61 http://ftp.hr.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:62 http://ftp.hr.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:63 http://ftp.hr.debian.org/debian/ unstable/main debhelper all 9.20120410 [694 kB]
-Get:64 http://ftp.hr.debian.org/debian/ unstable/main dpatch all 2.0.35 [95.2 kB]
-Get:65 http://ftp.hr.debian.org/debian/ unstable/main gfortran-4.6 sparc 4.6.3-3 [4152 kB]
-Get:66 http://ftp.hr.debian.org/debian/ unstable/main gfortran sparc 4:4.6.3-4 [1134 B]
-Get:67 http://ftp.hr.debian.org/debian/ unstable/main libblas3gf sparc 1.2.20110419-2 [188 kB]
-Get:68 http://ftp.hr.debian.org/debian/ unstable/main libblas-dev sparc 1.2.20110419-2 [200 kB]
-Get:69 http://ftp.hr.debian.org/debian/ unstable/main libbz2-dev sparc 1.0.6-1 [36.0 kB]
-Get:70 http://ftp.hr.debian.org/debian/ unstable/main libjpeg8-dev sparc 8d-1 [243 kB]
-Get:71 http://ftp.hr.debian.org/debian/ unstable/main liblapack3gf sparc 3.3.1-1 [3975 kB]
-Get:72 http://ftp.hr.debian.org/debian/ unstable/main liblapack-dev sparc 3.3.1-1 [4389 kB]
-Get:73 http://ftp.hr.debian.org/debian/ unstable/main libtinfo-dev sparc 5.9-6 [97.8 kB]
-Get:74 http://ftp.hr.debian.org/debian/ unstable/main libncurses5-dev sparc 5.9-6 [386 kB]
-Get:75 http://ftp.hr.debian.org/debian/ unstable/main libpaper1 sparc 1.1.24+nmu1 [21.1 kB]
-Get:76 http://ftp.hr.debian.org/debian/ unstable/main libpaper-utils sparc 1.1.24+nmu1 [17.9 kB]
-Get:77 http://ftp.hr.debian.org/debian/ unstable/main libpcre3-dev sparc 1:8.30-4 [353 kB]
-Get:78 http://ftp.hr.debian.org/debian/ unstable/main zlib1g-dev sparc 1:1.2.6.dfsg-2 [209 kB]
-Get:79 http://ftp.hr.debian.org/debian/ unstable/main libpng12-dev sparc 1.2.49-1 [263 kB]
-Get:80 http://ftp.hr.debian.org/debian/ unstable/main libreadline6-dev sparc 6.2-8 [258 kB]
-Get:81 http://ftp.hr.debian.org/debian/ unstable/main libreadline-dev sparc 6.2-8 [892 B]
-Get:82 http://ftp.hr.debian.org/debian/ unstable/main zip sparc 3.0-4 [335 kB]
-Get:83 http://ftp.hr.debian.org/debian/ unstable/main unzip sparc 6.0-6 [191 kB]
-Get:84 http://ftp.hr.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB]
-Get:85 http://ftp.hr.debian.org/debian/ unstable/main tcl8.5 sparc 8.5.11-1 [1579 kB]
-Get:86 http://ftp.hr.debian.org/debian/ unstable/main tk8.5 sparc 8.5.11-1 [1122 kB]
-Get:87 http://ftp.hr.debian.org/debian/ unstable/main r-base-core sparc 2.15.0-1 [20.4 MB]
-Get:88 http://ftp.hr.debian.org/debian/ unstable/main r-base-dev all 2.15.0-1 [3900 B]
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base gcc-4.8-base libc-dev-bin libc6
+ libc6-dev libc6-dev-sparc64 libc6-sparc64 libgcc1 libgomp1 libncurses5
+ libstdc++6 libstdc++6-4.6-dev libtinfo5 ncurses-bin
+17 upgraded, 83 newly installed, 0 to remove and 16 not upgraded.
+Need to get 87.1 MB of archives.
+After this operation, 116 MB of additional disk space will be used.
+Get:1 http://debian.carnet.hr/debian/ unstable/main libc6-dev-sparc64 sparc 2.17-2 [2773 kB]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main debhelper all 9.20130516 [708 kB]
+Get:3 http://debian.carnet.hr/debian/ unstable/main libc6-dev sparc 2.17-2 [3042 kB]
+Get:4 http://debian.carnet.hr/debian/ unstable/main libc-dev-bin sparc 2.17-2 [228 kB]
+Get:5 http://debian.carnet.hr/debian/ unstable/main libc6-sparc64 sparc 2.17-2 [4801 kB]
+Get:6 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-base-core sparc 3.0.1-1 [21.4 MB]
+Get:7 http://debian.carnet.hr/debian/ unstable/main libgomp1 sparc 4.8.0-7 [23.1 kB]
+Get:8 http://debian.carnet.hr/debian/ unstable/main gcc-4.8-base sparc 4.8.0-7 [149 kB]
+Get:9 http://debian.carnet.hr/debian/ unstable/main libgcc1 sparc 1:4.8.0-7 [31.1 kB]
+Get:10 http://debian.carnet.hr/debian/ unstable/main libc6 sparc 2.17-2 [4499 kB]
+Get:11 http://debian.carnet.hr/debian/ unstable/main libstdc++6 sparc 4.8.0-7 [344 kB]
+Get:12 http://debian.carnet.hr/debian/ unstable/main libtinfo5 sparc 5.9+20130504-1 [287 kB]
+Get:13 http://debian.carnet.hr/debian/ unstable/main libncurses5 sparc 5.9+20130504-1 [95.8 kB]
+Get:14 http://debian.carnet.hr/debian/ unstable/main ncurses-bin sparc 5.9+20130504-1 [359 kB]
+Get:15 http://debian.carnet.hr/debian/ unstable/main libpipeline1 sparc 1.2.3-1 [36.9 kB]
+Get:16 http://debian.carnet.hr/debian/ unstable/main groff-base sparc 1.22.2-2 [693 kB]
+Get:17 http://debian.carnet.hr/debian/ unstable/main bsdmainutils sparc 9.0.5 [204 kB]
+Get:18 http://debian.carnet.hr/debian/ unstable/main man-db sparc 2.6.3-6 [865 kB]
+Get:19 http://debian.carnet.hr/debian/ unstable/main libasprintf0c2 sparc 0.18.1.1-10 [26.9 kB]
+Get:20 http://debian.carnet.hr/debian/ unstable/main libmagic1 sparc 1:5.14-1 [212 kB]
+Get:21 http://debian.carnet.hr/debian/ unstable/main libpcre3 sparc 1:8.31-2 [252 kB]
+Get:22 http://debian.carnet.hr/debian/ unstable/main libxml2 sparc 2.8.0+dfsg1-7+nmu1 [826 kB]
+Get:23 http://debian.carnet.hr/debian/ unstable/main libexpat1 sparc 2.1.0-3 [131 kB]
+Get:24 http://debian.carnet.hr/debian/ unstable/main libfreetype6 sparc 2.4.9-1.1 [409 kB]
+Get:25 http://debian.carnet.hr/debian/ unstable/main ucf all 3.0025+nmu3 [70.8 kB]
+Get:26 http://debian.carnet.hr/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
+Get:27 http://debian.carnet.hr/debian/ unstable/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
+Get:28 http://debian.carnet.hr/debian/ unstable/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:29 http://debian.carnet.hr/debian/ unstable/main libfontconfig1 sparc 2.9.0-7.1 [290 kB]
+Get:30 http://debian.carnet.hr/debian/ unstable/main libpixman-1-0 sparc 0.26.0-4 [393 kB]
+Get:31 http://debian.carnet.hr/debian/ unstable/main libpng12-0 sparc 1.2.49-4 [181 kB]
+Get:32 http://debian.carnet.hr/debian/ unstable/main libxau6 sparc 1:1.0.7-1 [17.6 kB]
+Get:33 http://debian.carnet.hr/debian/ unstable/main libxdmcp6 sparc 1:1.1.1-1 [25.1 kB]
+Get:34 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-base-dev all 3.0.1-1 [3896 B]
+Get:35 http://debian.carnet.hr/debian/ unstable/main libxcb1 sparc 1.8.1-2 [39.9 kB]
+Get:36 http://debian.carnet.hr/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:37 http://debian.carnet.hr/debian/ unstable/main libx11-6 sparc 2:1.5.0-1 [841 kB]
+Get:38 http://debian.carnet.hr/debian/ unstable/main libxcb-render0 sparc 1.8.1-2 [15.8 kB]
+Get:39 http://debian.carnet.hr/debian/ unstable/main libxcb-shm0 sparc 1.8.1-2 [9894 B]
+Get:40 http://debian.carnet.hr/debian/ unstable/main libxext6 sparc 2:1.3.1-2 [48.2 kB]
+Get:41 http://debian.carnet.hr/debian/ unstable/main libxrender1 sparc 1:0.9.7-1 [29.2 kB]
+Get:42 http://debian.carnet.hr/debian/ unstable/main libcairo2 sparc 1.12.14-4 [959 kB]
+Get:43 http://debian.carnet.hr/debian/ unstable/main libffi6 sparc 3.0.13-4 [19.7 kB]
+Get:44 http://debian.carnet.hr/debian/ unstable/main libglib2.0-0 sparc 2.36.1-2build1 [1849 kB]
+Get:45 http://debian.carnet.hr/debian/ unstable/main libcroco3 sparc 0.6.6-2 [114 kB]
+Get:46 http://debian.carnet.hr/debian/ unstable/main libdatrie1 sparc 0.2.6-2 [27.2 kB]
+Get:47 http://debian.carnet.hr/debian/ unstable/main libunistring0 sparc 0.9.3-5 [416 kB]
+Get:48 http://debian.carnet.hr/debian/ unstable/main libgettextpo0 sparc 0.18.1.1-10 [130 kB]
+Get:49 http://debian.carnet.hr/debian/ unstable/main libgfortran3 sparc 4.8.0-7 [266 kB]
+Get:50 http://debian.carnet.hr/debian/ unstable/main x11-common all 1:7.7+3 [284 kB]
+Get:51 http://debian.carnet.hr/debian/ unstable/main libice6 sparc 2:1.0.8-2 [56.0 kB]
+Get:52 http://debian.carnet.hr/debian/ unstable/main libjpeg8 sparc 8d-1 [137 kB]
+Get:53 http://debian.carnet.hr/debian/ unstable/main libthai-data all 0.1.19-2 [156 kB]
+Get:54 http://debian.carnet.hr/debian/ unstable/main libthai0 sparc 0.1.19-2 [40.8 kB]
+Get:55 http://debian.carnet.hr/debian/ unstable/main libxft2 sparc 2.3.1-1 [56.0 kB]
+Get:56 http://debian.carnet.hr/debian/ unstable/main fontconfig sparc 2.9.0-7.1 [347 kB]
+Get:57 http://debian.carnet.hr/debian/ unstable/main libpango1.0-0 sparc 1.30.0-1 [422 kB]
+Get:58 http://debian.carnet.hr/debian/ unstable/main libpaper1 sparc 1.1.24+nmu2 [21.2 kB]
+Get:59 http://debian.carnet.hr/debian/ unstable/main libpcrecpp0 sparc 1:8.31-2 [126 kB]
+Get:60 http://debian.carnet.hr/debian/ unstable/main libsm6 sparc 2:1.2.1-2 [32.1 kB]
+Get:61 http://debian.carnet.hr/debian/ unstable/main libjbig0 sparc 2.0-2 [31.6 kB]
+Get:62 http://debian.carnet.hr/debian/ unstable/main libtiff5 sparc 4.0.2-6 [223 kB]
+Get:63 http://debian.carnet.hr/debian/ unstable/main libxss1 sparc 1:1.2.2-1 [16.7 kB]
+Get:64 http://debian.carnet.hr/debian/ unstable/main libxt6 sparc 1:1.1.3-1 [181 kB]
+Get:65 http://debian.carnet.hr/debian/ unstable/main libmpc3 sparc 1.0.1-1 [37.4 kB]
+Get:66 http://debian.carnet.hr/debian/ unstable/main file sparc 1:5.14-1 [53.4 kB]
+Get:67 http://debian.carnet.hr/debian/ unstable/main gettext-base sparc 0.18.1.1-10 [148 kB]
+Get:68 http://debian.carnet.hr/debian/ unstable/main cdbs all 0.4.121 [80.5 kB]
+Get:69 http://debian.carnet.hr/debian/ unstable/main libstdc++6-4.6-dev sparc 4.6.4-2 [1661 kB]
+Get:70 http://debian.carnet.hr/debian/ unstable/main g++-4.6 sparc 4.6.4-2 [5479 kB]
+Get:71 http://debian.carnet.hr/debian/ unstable/main gcc-4.6 sparc 4.6.4-2 [3658 kB]
+Get:72 http://debian.carnet.hr/debian/ unstable/main cpp-4.6 sparc 4.6.4-2 [3461 kB]
+Get:73 http://debian.carnet.hr/debian/ unstable/main gcc-4.6-base sparc 4.6.4-2 [143 kB]
+Get:74 http://debian.carnet.hr/debian/ unstable/main html2text sparc 1.3.2a-15 [100 kB]
+Get:75 http://debian.carnet.hr/debian/ unstable/main libasprintf-dev sparc 0.18.1.1-10 [26.6 kB]
+Get:76 http://debian.carnet.hr/debian/ unstable/main libgettextpo-dev sparc 0.18.1.1-10 [172 kB]
+Get:77 http://debian.carnet.hr/debian/ unstable/main gettext sparc 0.18.1.1-10 [1745 kB]
+Get:78 http://debian.carnet.hr/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:79 http://debian.carnet.hr/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:80 http://debian.carnet.hr/debian/ unstable/main gfortran-4.6 sparc 4.6.4-2 [4076 kB]
+Get:81 http://debian.carnet.hr/debian/ unstable/main gfortran sparc 4:4.6.3-8 [1124 B]
+Get:82 http://debian.carnet.hr/debian/ unstable/main libblas3 sparc 1.2.20110419-5 [191 kB]
+Get:83 http://debian.carnet.hr/debian/ unstable/main libblas-dev sparc 1.2.20110419-5 [208 kB]
+Get:84 http://debian.carnet.hr/debian/ unstable/main libbz2-dev sparc 1.0.6-4 [36.3 kB]
+Get:85 http://debian.carnet.hr/debian/ unstable/main libjpeg8-dev sparc 8d-1 [243 kB]
+Get:86 http://debian.carnet.hr/debian/ unstable/main liblapack3 sparc 3.4.2+dfsg-1 [4089 kB]
+Get:87 http://debian.carnet.hr/debian/ unstable/main liblapack-dev sparc 3.4.2+dfsg-1 [4840 kB]
+Get:88 http://debian.carnet.hr/debian/ unstable/main libtinfo-dev sparc 5.9+20130504-1 [101 kB]
+Get:89 http://debian.carnet.hr/debian/ unstable/main libncurses5-dev sparc 5.9+20130504-1 [207 kB]
+Get:90 http://debian.carnet.hr/debian/ unstable/main libpaper-utils sparc 1.1.24+nmu2 [17.8 kB]
+Get:91 http://debian.carnet.hr/debian/ unstable/main libpcre3-dev sparc 1:8.31-2 [360 kB]
+Get:92 http://debian.carnet.hr/debian/ unstable/main zlib1g-dev sparc 1:1.2.8.dfsg-1 [213 kB]
+Get:93 http://debian.carnet.hr/debian/ unstable/main libpng12-dev sparc 1.2.49-4 [263 kB]
+Get:94 http://debian.carnet.hr/debian/ unstable/main libreadline6-dev sparc 6.2+dfsg-0.1 [184 kB]
+Get:95 http://debian.carnet.hr/debian/ unstable/main libreadline-dev sparc 6.2+dfsg-0.1 [898 B]
+Get:96 http://debian.carnet.hr/debian/ unstable/main zip sparc 3.0-7 [332 kB]
+Get:97 http://debian.carnet.hr/debian/ unstable/main unzip sparc 6.0-9 [191 kB]
+Get:98 http://debian.carnet.hr/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:99 http://debian.carnet.hr/debian/ unstable/main tcl8.5 sparc 8.5.11-2 [1582 kB]
+Get:100 http://debian.carnet.hr/debian/ unstable/main tk8.5 sparc 8.5.11-2 [1130 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 71.6 MB in 39s (1808 kB/s)
-(Reading database ... 11147 files and directories currently installed.)
-Preparing to replace ncurses-bin 5.9-5 (using .../ncurses-bin_5.9-6_sparc.deb) ...
-Unpacking replacement ncurses-bin ...
-Setting up ncurses-bin (5.9-6) ...
-(Reading database ... 11147 files and directories currently installed.)
-Preparing to replace libgomp1:sparc 4.7.0-1 (using .../libgomp1_4.7.0-2_sparc.deb) ...
+Fetched 87.1 MB in 48s (1779 kB/s)
+(Reading database ... 11171 files and directories currently installed.)
+Preparing to replace libc6-dev-sparc64 2.13-38 (using .../libc6-dev-sparc64_2.17-2_sparc.deb) ...
+Unpacking replacement libc6-dev-sparc64 ...
+Preparing to replace libc6-dev:sparc 2.13-38 (using .../libc6-dev_2.17-2_sparc.deb) ...
+Unpacking replacement libc6-dev:sparc ...
+Preparing to replace libc-dev-bin 2.13-38 (using .../libc-dev-bin_2.17-2_sparc.deb) ...
+Unpacking replacement libc-dev-bin ...
+Preparing to replace libc6-sparc64 2.13-38 (using .../libc6-sparc64_2.17-2_sparc.deb) ...
+Unpacking replacement libc6-sparc64 ...
+Preparing to replace libgomp1:sparc 4.8.0-6 (using .../libgomp1_4.8.0-7_sparc.deb) ...
Unpacking replacement libgomp1:sparc ...
-Preparing to replace gcc-4.7-base:sparc 4.7.0-1 (using .../gcc-4.7-base_4.7.0-2_sparc.deb) ...
-Unpacking replacement gcc-4.7-base:sparc ...
-Setting up gcc-4.7-base:sparc (4.7.0-2) ...
-(Reading database ... 11147 files and directories currently installed.)
-Preparing to replace libstdc++6:sparc 4.7.0-1 (using .../libstdc++6_4.7.0-2_sparc.deb) ...
-Unpacking replacement libstdc++6:sparc ...
-Setting up libstdc++6:sparc (4.7.0-2) ...
-(Reading database ... 11147 files and directories currently installed.)
-Preparing to replace libgcc1:sparc 1:4.7.0-1 (using .../libgcc1_1%3a4.7.0-2_sparc.deb) ...
+Preparing to replace gcc-4.8-base:sparc 4.8.0-6 (using .../gcc-4.8-base_4.8.0-7_sparc.deb) ...
+Unpacking replacement gcc-4.8-base:sparc ...
+Setting up gcc-4.8-base:sparc (4.8.0-7) ...
+(Reading database ... 11193 files and directories currently installed.)
+Preparing to replace libgcc1:sparc 1:4.8.0-6 (using .../libgcc1_1%3a4.8.0-7_sparc.deb) ...
Unpacking replacement libgcc1:sparc ...
-Setting up libgcc1:sparc (1:4.7.0-2) ...
-(Reading database ... 11147 files and directories currently installed.)
-Preparing to replace libtinfo5:sparc 5.9-5 (using .../libtinfo5_5.9-6_sparc.deb) ...
+Setting up libgcc1:sparc (1:4.8.0-7) ...
+(Reading database ... 11193 files and directories currently installed.)
+Preparing to replace libc6:sparc 2.13-38 (using .../libc6_2.17-2_sparc.deb) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Unpacking replacement libc6:sparc ...
+Setting up libc6:sparc (2.17-2) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Nothing to restart.
+(Reading database ... 11199 files and directories currently installed.)
+Preparing to replace libstdc++6:sparc 4.8.0-6 (using .../libstdc++6_4.8.0-7_sparc.deb) ...
+Unpacking replacement libstdc++6:sparc ...
+Setting up libstdc++6:sparc (4.8.0-7) ...
+(Reading database ... 11199 files and directories currently installed.)
+Preparing to replace libtinfo5:sparc 5.9-10 (using .../libtinfo5_5.9+20130504-1_sparc.deb) ...
Unpacking replacement libtinfo5:sparc ...
-Setting up libtinfo5:sparc (5.9-6) ...
-(Reading database ... 11147 files and directories currently installed.)
-Preparing to replace libncurses5:sparc 5.9-5 (using .../libncurses5_5.9-6_sparc.deb) ...
+Setting up libtinfo5:sparc (5.9+20130504-1) ...
+(Reading database ... 11199 files and directories currently installed.)
+Preparing to replace libncurses5:sparc 5.9-10 (using .../libncurses5_5.9+20130504-1_sparc.deb) ...
Unpacking replacement libncurses5:sparc ...
-Setting up libncurses5:sparc (5.9-6) ...
+Setting up libncurses5:sparc (5.9+20130504-1) ...
+(Reading database ... 11199 files and directories currently installed.)
+Preparing to replace ncurses-bin 5.9-10 (using .../ncurses-bin_5.9+20130504-1_sparc.deb) ...
+Unpacking replacement ncurses-bin ...
+Setting up ncurses-bin (5.9+20130504-1) ...
Selecting previously unselected package libpipeline1:sparc.
-(Reading database ... 11147 files and directories currently installed.)
-Unpacking libpipeline1:sparc (from .../libpipeline1_1.2.1-1_sparc.deb) ...
+(Reading database ... 11197 files and directories currently installed.)
+Unpacking libpipeline1:sparc (from .../libpipeline1_1.2.3-1_sparc.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.22.2-2_sparc.deb) ...
+Selecting previously unselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_sparc.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.3-6_sparc.deb) ...
+Selecting previously unselected package libasprintf0c2:sparc.
+Unpacking libasprintf0c2:sparc (from .../libasprintf0c2_0.18.1.1-10_sparc.deb) ...
Selecting previously unselected package libmagic1:sparc.
-Unpacking libmagic1:sparc (from .../libmagic1_5.11-1_sparc.deb) ...
+Unpacking libmagic1:sparc (from .../libmagic1_1%3a5.14-1_sparc.deb) ...
Selecting previously unselected package libpcre3:sparc.
-Unpacking libpcre3:sparc (from .../libpcre3_1%3a8.30-4_sparc.deb) ...
+Unpacking libpcre3:sparc (from .../libpcre3_1%3a8.31-2_sparc.deb) ...
+Selecting previously unselected package libxml2:sparc.
+Unpacking libxml2:sparc (from .../libxml2_2.8.0+dfsg1-7+nmu1_sparc.deb) ...
Selecting previously unselected package libexpat1:sparc.
-Unpacking libexpat1:sparc (from .../libexpat1_2.1.0-1_sparc.deb) ...
+Unpacking libexpat1:sparc (from .../libexpat1_2.1.0-3_sparc.deb) ...
Selecting previously unselected package libfreetype6:sparc.
-Unpacking libfreetype6:sparc (from .../libfreetype6_2.4.9-1_sparc.deb) ...
+Unpacking libfreetype6:sparc (from .../libfreetype6_2.4.9-1.1_sparc.deb) ...
+Selecting previously unselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ...
+Moving old data out of the way
+Selecting previously unselected package fonts-dejavu-core.
+Unpacking fonts-dejavu-core (from .../fonts-dejavu-core_2.33+svn2514-3_all.deb) ...
Selecting previously unselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33+svn2514-3_all.deb) ...
Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ...
Selecting previously unselected package libfontconfig1:sparc.
-Unpacking libfontconfig1:sparc (from .../libfontconfig1_2.8.0-3.1_sparc.deb) ...
+Unpacking libfontconfig1:sparc (from .../libfontconfig1_2.9.0-7.1_sparc.deb) ...
Selecting previously unselected package libpixman-1-0:sparc.
-Unpacking libpixman-1-0:sparc (from .../libpixman-1-0_0.24.4-1_sparc.deb) ...
+Unpacking libpixman-1-0:sparc (from .../libpixman-1-0_0.26.0-4_sparc.deb) ...
Selecting previously unselected package libpng12-0:sparc.
-Unpacking libpng12-0:sparc (from .../libpng12-0_1.2.49-1_sparc.deb) ...
+Unpacking libpng12-0:sparc (from .../libpng12-0_1.2.49-4_sparc.deb) ...
Selecting previously unselected package libxau6:sparc.
Unpacking libxau6:sparc (from .../libxau6_1%3a1.0.7-1_sparc.deb) ...
Selecting previously unselected package libxdmcp6:sparc.
-Unpacking libxdmcp6:sparc (from .../libxdmcp6_1%3a1.1.0-4_sparc.deb) ...
+Unpacking libxdmcp6:sparc (from .../libxdmcp6_1%3a1.1.1-1_sparc.deb) ...
Selecting previously unselected package libxcb1:sparc.
-Unpacking libxcb1:sparc (from .../libxcb1_1.8.1-1_sparc.deb) ...
+Unpacking libxcb1:sparc (from .../libxcb1_1.8.1-2_sparc.deb) ...
Selecting previously unselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
+Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ...
Selecting previously unselected package libx11-6:sparc.
-Unpacking libx11-6:sparc (from .../libx11-6_2%3a1.4.4-4_sparc.deb) ...
+Unpacking libx11-6:sparc (from .../libx11-6_2%3a1.5.0-1_sparc.deb) ...
Selecting previously unselected package libxcb-render0:sparc.
-Unpacking libxcb-render0:sparc (from .../libxcb-render0_1.8.1-1_sparc.deb) ...
+Unpacking libxcb-render0:sparc (from .../libxcb-render0_1.8.1-2_sparc.deb) ...
Selecting previously unselected package libxcb-shm0:sparc.
-Unpacking libxcb-shm0:sparc (from .../libxcb-shm0_1.8.1-1_sparc.deb) ...
+Unpacking libxcb-shm0:sparc (from .../libxcb-shm0_1.8.1-2_sparc.deb) ...
+Selecting previously unselected package libxext6:sparc.
+Unpacking libxext6:sparc (from .../libxext6_2%3a1.3.1-2_sparc.deb) ...
Selecting previously unselected package libxrender1:sparc.
-Unpacking libxrender1:sparc (from .../libxrender1_1%3a0.9.6-2_sparc.deb) ...
+Unpacking libxrender1:sparc (from .../libxrender1_1%3a0.9.7-1_sparc.deb) ...
Selecting previously unselected package libcairo2:sparc.
-Unpacking libcairo2:sparc (from .../libcairo2_1.12.0-2_sparc.deb) ...
-Selecting previously unselected package libffi5:sparc.
-Unpacking libffi5:sparc (from .../libffi5_3.0.10-3_sparc.deb) ...
+Unpacking libcairo2:sparc (from .../libcairo2_1.12.14-4_sparc.deb) ...
+Selecting previously unselected package libffi6:sparc.
+Unpacking libffi6:sparc (from .../libffi6_3.0.13-4_sparc.deb) ...
Selecting previously unselected package libglib2.0-0:sparc.
-Unpacking libglib2.0-0:sparc (from .../libglib2.0-0_2.32.0-4_sparc.deb) ...
-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-7_sparc.deb) ...
+Unpacking libglib2.0-0:sparc (from .../libglib2.0-0_2.36.1-2build1_sparc.deb) ...
Selecting previously unselected package libcroco3:sparc.
-Unpacking libcroco3:sparc (from .../libcroco3_0.6.5-1_sparc.deb) ...
+Unpacking libcroco3:sparc (from .../libcroco3_0.6.6-2_sparc.deb) ...
Selecting previously unselected package libdatrie1:sparc.
-Unpacking libdatrie1:sparc (from .../libdatrie1_0.2.5-3_sparc.deb) ...
+Unpacking libdatrie1:sparc (from .../libdatrie1_0.2.6-2_sparc.deb) ...
+Selecting previously unselected package libunistring0:sparc.
+Unpacking libunistring0:sparc (from .../libunistring0_0.9.3-5_sparc.deb) ...
+Selecting previously unselected package libgettextpo0:sparc.
+Unpacking libgettextpo0:sparc (from .../libgettextpo0_0.18.1.1-10_sparc.deb) ...
Selecting previously unselected package libgfortran3:sparc.
-Unpacking libgfortran3:sparc (from .../libgfortran3_4.7.0-2_sparc.deb) ...
+Unpacking libgfortran3:sparc (from .../libgfortran3_4.8.0-7_sparc.deb) ...
Selecting previously unselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
+Unpacking x11-common (from .../x11-common_1%3a7.7+3_all.deb) ...
Selecting previously unselected package libice6:sparc.
Unpacking libice6:sparc (from .../libice6_2%3a1.0.8-2_sparc.deb) ...
Selecting previously unselected package libjpeg8:sparc.
Unpacking libjpeg8:sparc (from .../libjpeg8_8d-1_sparc.deb) ...
Selecting previously unselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.17-1_all.deb) ...
+Unpacking libthai-data (from .../libthai-data_0.1.19-2_all.deb) ...
Selecting previously unselected package libthai0:sparc.
-Unpacking libthai0:sparc (from .../libthai0_0.1.17-1_sparc.deb) ...
+Unpacking libthai0:sparc (from .../libthai0_0.1.19-2_sparc.deb) ...
Selecting previously unselected package libxft2:sparc.
-Unpacking libxft2:sparc (from .../libxft2_2.2.0-3_sparc.deb) ...
+Unpacking libxft2:sparc (from .../libxft2_2.3.1-1_sparc.deb) ...
Selecting previously unselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-3.1_sparc.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_sparc.deb) ...
Selecting previously unselected package libpango1.0-0:sparc.
Unpacking libpango1.0-0:sparc (from .../libpango1.0-0_1.30.0-1_sparc.deb) ...
+Selecting previously unselected package libpaper1:sparc.
+Unpacking libpaper1:sparc (from .../libpaper1_1.1.24+nmu2_sparc.deb) ...
Selecting previously unselected package libpcrecpp0:sparc.
-Unpacking libpcrecpp0:sparc (from .../libpcrecpp0_1%3a8.30-4_sparc.deb) ...
+Unpacking libpcrecpp0:sparc (from .../libpcrecpp0_1%3a8.31-2_sparc.deb) ...
Selecting previously unselected package libsm6:sparc.
Unpacking libsm6:sparc (from .../libsm6_2%3a1.2.1-2_sparc.deb) ...
-Selecting previously unselected package libtiff4:sparc.
-Unpacking libtiff4:sparc (from .../libtiff4_3.9.6-2_sparc.deb) ...
-Selecting previously unselected package libunistring0:sparc.
-Unpacking libunistring0:sparc (from .../libunistring0_0.9.3-5_sparc.deb) ...
-Selecting previously unselected package libxext6:sparc.
-Unpacking libxext6:sparc (from .../libxext6_2%3a1.3.0-3_sparc.deb) ...
+Selecting previously unselected package libjbig0:sparc.
+Unpacking libjbig0:sparc (from .../libjbig0_2.0-2_sparc.deb) ...
+Selecting previously unselected package libtiff5:sparc.
+Unpacking libtiff5:sparc (from .../libtiff5_4.0.2-6_sparc.deb) ...
Selecting previously unselected package libxss1:sparc.
-Unpacking libxss1:sparc (from .../libxss1_1%3a1.2.1-2_sparc.deb) ...
+Unpacking libxss1:sparc (from .../libxss1_1%3a1.2.2-1_sparc.deb) ...
Selecting previously unselected package libxt6:sparc.
-Unpacking libxt6:sparc (from .../libxt6_1%3a1.1.1-2_sparc.deb) ...
-Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_sparc.deb) ...
-Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-7_sparc.deb) ...
-Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.1-2_sparc.deb) ...
-Preparing to replace g++-4.6 4.6.3-1 (using .../g++-4.6_4.6.3-3_sparc.deb) ...
-Unpacking replacement g++-4.6 ...
-Preparing to replace libstdc++6-4.6-dev 4.6.3-1 (using .../libstdc++6-4.6-dev_4.6.3-3_sparc.deb) ...
+Unpacking libxt6:sparc (from .../libxt6_1%3a1.1.3-1_sparc.deb) ...
+Selecting previously unselected package libmpc3:sparc.
+Unpacking libmpc3:sparc (from .../libmpc3_1.0.1-1_sparc.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_1%3a5.14-1_sparc.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_sparc.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
+Preparing to replace libstdc++6-4.6-dev 4.6.3-15 (using .../libstdc++6-4.6-dev_4.6.4-2_sparc.deb) ...
Unpacking replacement libstdc++6-4.6-dev ...
-Preparing to replace gcc-4.6 4.6.3-1 (using .../gcc-4.6_4.6.3-3_sparc.deb) ...
+Preparing to replace g++-4.6 4.6.3-15 (using .../g++-4.6_4.6.4-2_sparc.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.3-15 (using .../gcc-4.6_4.6.4-2_sparc.deb) ...
Unpacking replacement gcc-4.6 ...
-Preparing to replace cpp-4.6 4.6.3-1 (using .../cpp-4.6_4.6.3-3_sparc.deb) ...
+Preparing to replace cpp-4.6 4.6.3-15 (using .../cpp-4.6_4.6.4-2_sparc.deb) ...
Unpacking replacement cpp-4.6 ...
-Preparing to replace gcc-4.6-base:sparc 4.6.3-1 (using .../gcc-4.6-base_4.6.3-3_sparc.deb) ...
+Preparing to replace gcc-4.6-base:sparc 4.6.3-15 (using .../gcc-4.6-base_4.6.4-2_sparc.deb) ...
Unpacking replacement gcc-4.6-base:sparc ...
-Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.11-1_sparc.deb) ...
-Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_sparc.deb) ...
-Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.109_all.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_sparc.deb) ...
+Selecting previously unselected package libasprintf-dev:sparc.
+Unpacking libasprintf-dev:sparc (from .../libasprintf-dev_0.18.1.1-10_sparc.deb) ...
+Selecting previously unselected package libgettextpo-dev:sparc.
+Unpacking libgettextpo-dev:sparc (from .../libgettextpo-dev_0.18.1.1-10_sparc.deb) ...
Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-5_sparc.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-10_sparc.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120410_all.deb) ...
-Selecting previously unselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.35_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20130516_all.deb) ...
Selecting previously unselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-3_sparc.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.4-2_sparc.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.3-4_sparc.deb) ...
-Selecting previously unselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_sparc.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.3-8_sparc.deb) ...
+Selecting previously unselected package libblas3.
+Unpacking libblas3 (from .../libblas3_1.2.20110419-5_sparc.deb) ...
Selecting previously unselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_sparc.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_sparc.deb) ...
Selecting previously unselected package libbz2-dev:sparc.
-Unpacking libbz2-dev:sparc (from .../libbz2-dev_1.0.6-1_sparc.deb) ...
+Unpacking libbz2-dev:sparc (from .../libbz2-dev_1.0.6-4_sparc.deb) ...
Selecting previously unselected package libjpeg8-dev:sparc.
Unpacking libjpeg8-dev:sparc (from .../libjpeg8-dev_8d-1_sparc.deb) ...
-Selecting previously unselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_sparc.deb) ...
+Selecting previously unselected package liblapack3.
+Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_sparc.deb) ...
Selecting previously unselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_sparc.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.4.2+dfsg-1_sparc.deb) ...
Selecting previously unselected package libtinfo-dev:sparc.
-Unpacking libtinfo-dev:sparc (from .../libtinfo-dev_5.9-6_sparc.deb) ...
-Selecting previously unselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-6_sparc.deb) ...
-Selecting previously unselected package libpaper1.
-Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_sparc.deb) ...
+Unpacking libtinfo-dev:sparc (from .../libtinfo-dev_5.9+20130504-1_sparc.deb) ...
+Selecting previously unselected package libncurses5-dev:sparc.
+Unpacking libncurses5-dev:sparc (from .../libncurses5-dev_5.9+20130504-1_sparc.deb) ...
Selecting previously unselected package libpaper-utils.
-Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_sparc.deb) ...
-Selecting previously unselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_1%3a8.30-4_sparc.deb) ...
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_sparc.deb) ...
+Selecting previously unselected package libpcre3-dev:sparc.
+Unpacking libpcre3-dev:sparc (from .../libpcre3-dev_1%3a8.31-2_sparc.deb) ...
Selecting previously unselected package zlib1g-dev:sparc.
-Unpacking zlib1g-dev:sparc (from .../zlib1g-dev_1%3a1.2.6.dfsg-2_sparc.deb) ...
+Unpacking zlib1g-dev:sparc (from .../zlib1g-dev_1%3a1.2.8.dfsg-1_sparc.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-1_sparc.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_sparc.deb) ...
Selecting previously unselected package libreadline6-dev:sparc.
-Unpacking libreadline6-dev:sparc (from .../libreadline6-dev_6.2-8_sparc.deb) ...
+Unpacking libreadline6-dev:sparc (from .../libreadline6-dev_6.2+dfsg-0.1_sparc.deb) ...
Selecting previously unselected package libreadline-dev:sparc.
-Unpacking libreadline-dev:sparc (from .../libreadline-dev_6.2-8_sparc.deb) ...
+Unpacking libreadline-dev:sparc (from .../libreadline-dev_6.2+dfsg-0.1_sparc.deb) ...
Selecting previously unselected package zip.
-Unpacking zip (from .../archives/zip_3.0-4_sparc.deb) ...
+Unpacking zip (from .../archives/zip_3.0-7_sparc.deb) ...
Selecting previously unselected package unzip.
-Unpacking unzip (from .../archives/unzip_6.0-6_sparc.deb) ...
+Unpacking unzip (from .../archives/unzip_6.0-9_sparc.deb) ...
Selecting previously unselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-6_all.deb) ...
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
Selecting previously unselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_sparc.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_sparc.deb) ...
Selecting previously unselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.11-1_sparc.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_sparc.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.15.0-1_sparc.deb) ...
+Unpacking r-base-core (from .../r-base-core_3.0.1-1_sparc.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.15.0-1_all.deb) ...
-Setting up libgomp1:sparc (4.7.0-2) ...
-Setting up libpipeline1:sparc (1.2.1-1) ...
-Setting up libmagic1:sparc (5.11-1) ...
-Setting up libpcre3:sparc (1:8.30-4) ...
-Setting up libexpat1:sparc (2.1.0-1) ...
-Setting up libfreetype6:sparc (2.4.9-1) ...
-Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3.1) ...
-Setting up libfontconfig1:sparc (2.8.0-3.1) ...
-Setting up libpixman-1-0:sparc (0.24.4-1) ...
-Setting up libpng12-0:sparc (1.2.49-1) ...
+Unpacking r-base-dev (from .../r-base-dev_3.0.1-1_all.deb) ...
+Setting up libc6-sparc64 (2.17-2) ...
+Setting up libc-dev-bin (2.17-2) ...
+Setting up libc6-dev:sparc (2.17-2) ...
+Setting up libc6-dev-sparc64 (2.17-2) ...
+Setting up libgomp1:sparc (4.8.0-7) ...
+Setting up libpipeline1:sparc (1.2.3-1) ...
+Setting up groff-base (1.22.2-2) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.3-6) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:sparc (0.18.1.1-10) ...
+Setting up libmagic1:sparc (1:5.14-1) ...
+Setting up libpcre3:sparc (1:8.31-2) ...
+Setting up libxml2:sparc (2.8.0+dfsg1-7+nmu1) ...
+Setting up libexpat1:sparc (2.1.0-3) ...
+Setting up libfreetype6:sparc (2.4.9-1.1) ...
+Setting up ucf (3.0025+nmu3) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:sparc (2.9.0-7.1) ...
+Setting up libpixman-1-0:sparc (0.26.0-4) ...
+Setting up libpng12-0:sparc (1.2.49-4) ...
Setting up libxau6:sparc (1:1.0.7-1) ...
-Setting up libxdmcp6:sparc (1:1.1.0-4) ...
-Setting up libxcb1:sparc (1.8.1-1) ...
-Setting up libx11-data (2:1.4.4-4) ...
-Setting up libx11-6:sparc (2:1.4.4-4) ...
-Setting up libxcb-render0:sparc (1.8.1-1) ...
-Setting up libxcb-shm0:sparc (1.8.1-1) ...
-Setting up libxrender1:sparc (1:0.9.6-2) ...
-Setting up libcairo2:sparc (1.12.0-2) ...
-Setting up libffi5:sparc (3.0.10-3) ...
-Setting up libglib2.0-0:sparc (2.32.0-4) ...
+Setting up libxdmcp6:sparc (1:1.1.1-1) ...
+Setting up libxcb1:sparc (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:sparc (2:1.5.0-1) ...
+Setting up libxcb-render0:sparc (1.8.1-2) ...
+Setting up libxcb-shm0:sparc (1.8.1-2) ...
+Setting up libxext6:sparc (2:1.3.1-2) ...
+Setting up libxrender1:sparc (1:0.9.7-1) ...
+Setting up libcairo2:sparc (1.12.14-4) ...
+Setting up libffi6:sparc (3.0.13-4) ...
+Setting up libglib2.0-0:sparc (2.36.1-2build1) ...
No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-7) ...
-Setting up libcroco3:sparc (0.6.5-1) ...
-Setting up libdatrie1:sparc (0.2.5-3) ...
-Setting up libgfortran3:sparc (4.7.0-2) ...
-Setting up x11-common (1:7.6+12) ...
+Setting up libcroco3:sparc (0.6.6-2) ...
+Setting up libdatrie1:sparc (0.2.6-2) ...
+Setting up libunistring0:sparc (0.9.3-5) ...
+Setting up libgettextpo0:sparc (0.18.1.1-10) ...
+Setting up libgfortran3:sparc (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6:sparc (2:1.0.8-2) ...
Setting up libjpeg8:sparc (8d-1) ...
-Setting up libthai-data (0.1.17-1) ...
-Setting up libthai0:sparc (0.1.17-1) ...
-Setting up libxft2:sparc (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3.1) ...
-Cleaning up old fontconfig caches... done.
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:sparc (0.1.19-2) ...
+Setting up libxft2:sparc (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
Regenerating fonts cache... done.
Setting up libpango1.0-0:sparc (1.30.0-1) ...
-Setting up libpcrecpp0:sparc (1:8.30-4) ...
+Setting up libpaper1:sparc (1.1.24+nmu2) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpcrecpp0:sparc (1:8.31-2) ...
Setting up libsm6:sparc (2:1.2.1-2) ...
-Setting up libtiff4:sparc (3.9.6-2) ...
-Setting up libunistring0:sparc (0.9.3-5) ...
-Setting up libxext6:sparc (2:1.3.0-3) ...
-Setting up libxss1:sparc (1:1.2.1-2) ...
-Setting up libxt6:sparc (1:1.1.1-2) ...
-Setting up bsdmainutils (9.0.1) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
-Building database of manual pages ...
-Setting up gcc-4.6-base:sparc (4.6.3-3) ...
-Setting up cpp-4.6 (4.6.3-3) ...
-Setting up gcc-4.6 (4.6.3-3) ...
-Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.109) ...
+Setting up libjbig0:sparc (2.0-2) ...
+Setting up libtiff5:sparc (4.0.2-6) ...
+Setting up libxss1:sparc (1:1.2.2-1) ...
+Setting up libxt6:sparc (1:1.1.3-1) ...
+Setting up libmpc3:sparc (1.0.1-1) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
+Setting up gcc-4.6-base:sparc (4.6.4-2) ...
+Setting up cpp-4.6 (4.6.4-2) ...
+Setting up gcc-4.6 (4.6.4-2) ...
Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-5) ...
+Setting up libasprintf-dev:sparc (0.18.1.1-10) ...
+Setting up libgettextpo-dev:sparc (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120410) ...
-Setting up dpatch (2.0.35) ...
-Setting up gfortran-4.6 (4.6.3-3) ...
-Setting up gfortran (4:4.6.3-4) ...
-update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2.20110419-2) ...
-update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev:sparc (1.0.6-1) ...
+Setting up debhelper (9.20130516) ...
+Setting up gfortran-4.6 (4.6.4-2) ...
+Setting up gfortran (4:4.6.3-8) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:sparc (1.0.6-4) ...
Setting up libjpeg8-dev:sparc (8d-1) ...
-Setting up liblapack3gf (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.1-1) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev:sparc (5.9-6) ...
-Setting up libncurses5-dev (5.9-6) ...
-Setting up libpaper1 (1.1.24+nmu1) ...
-
-Creating config file /etc/papersize with new version
-Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcre3-dev (1:8.30-4) ...
-Setting up zlib1g-dev:sparc (1:1.2.6.dfsg-2) ...
-Setting up libpng12-dev (1.2.49-1) ...
-Setting up libreadline6-dev:sparc (6.2-8) ...
-Setting up libreadline-dev:sparc (6.2-8) ...
-Setting up zip (3.0-4) ...
-Setting up unzip (6.0-6) ...
-Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
-Setting up tcl8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.11-1) ...
-update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.15.0-1) ...
-Setting R_PAPERSIZE_USER default to 'a4'
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:sparc (5.9+20130504-1) ...
+Setting up libncurses5-dev:sparc (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:sparc (1:8.31-2) ...
+Setting up zlib1g-dev:sparc (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:sparc (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:sparc (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.1-1) ...
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.15.0-1) ...
-Setting up g++-4.6 (4.6.3-3) ...
-Setting up libstdc++6-4.6-dev (4.6.3-3) ...
+Setting up r-base-dev (3.0.1-1) ...
+Setting up g++-4.6 (4.6.4-2) ...
+Setting up libstdc++6-4.6-dev (4.6.4-2) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 8 not upgraded.
+The following package was automatically installed and is no longer required:
+ libmpc2
+Use 'apt-get autoremove' to remove it.
+0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-sparc64-smp sparc (sparc64)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-3 gcc-4.6_4.6.3-3 libc6-dev_2.13-27 libstdc++6_4.7.0-2 libstdc++6-4.6-dev_4.6.3-3 linux-libc-dev_3.2.13-1
-Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.109 coreutils_8.13-3.1 cpp_4:4.6.3-4 cpp-4.6_4.6.3-3 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120410 debian-archive-keyring_2010.08.28 debianutils_4.3 diffutils_1:3.2-2 dpatch_2.0.35 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-1 e2fsprogs_1.42.2-1 fakeroot_1.18.2-1 file_5.11-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.3-4 g++-4.6_4.6.3-3 gcc_4:4.6.3-4 gcc-4.6_4.6.3-3 gcc-4.6-base_4.6.3-3 gcc-4.7-base_4.7.0-2 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.3-4 gfortran-4.6_4.6.3-3 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.10-1 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-27 libc-dev-bin_2.13-27 libc6_2.13-27 libc6-dev_2.13-27 libc6-dev-sparc64_2.13-27 libc6-sparc64_2.13-27 libcairo2_1.12.0-2 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-1 libcroco3_0.6.5-1 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libexpat1_2.1.0-1 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-1+b1 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-2 libgdbm3_1.8.3-10 libgfortran3_4.7.0-2 libglib2.0-0_2.32.0-4 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-2 libice6_2:1.0.8-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-6 libncurses5-dev_5.9-6 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_1:8.30-4 libpcre3-dev_1:8.30-4 libpcrecpp0_1:8.30-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.49-1 libpng12-dev_1.2.49-1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.9-4 libsemanage-common_2.1.6-5 libsemanage1_2.1.6-5 libsepol1_2.1.4-3 libsm6_2:1.2.1-2 libss2_1.42.2-1 libstdc++6_4.7.0-2 libstdc++6-4.6-dev_4.6.3-3 libswitch-perl_2.16-2 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-6 libtinfo5_5.9-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.2.13-1 login_1:4.1.5-1 lsb-base_4.1+Debian0 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-27 ncurses-base_5.9-5 ncurses-bin_5.9-6 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 r-base-core_2.15.0-1 r-base-dev_2.15.0-1 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2012b-1 ucf_3.0025+nmu2 unzip_6.0-6 util-linux_2.20.1-4 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.6_4.6.4-2 gcc-4.6_4.6.4-2 libc6-dev_2.17-2 libstdc++6_4.8.0-7 libstdc++6-4.6-dev_4.6.4-2 linux-libc-dev_3.2.41-2
+Package versions: apt_0.9.8 base-files_7.2 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.13-3.3 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2 dash_0.5.7-3 debconf_1.5.50 debfoster_2.7-1.2 debhelper_9.20130516 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-1 findutils_4.4.2-5 fontconfig_2.9.0-7.1 fontconfig-config_2.9.0-7.1 fonts-dejavu-core_2.33+svn2514-3 g++_4:4.6.3-8 g++-4.6_4.6.4-2 gcc_4:4.6.3-8 gcc-4.6_4.6.4-2 gcc-4.6-base_4.6.4-2 gcc-4.8-base_4.8.0-7 gettext_0.18.1.1-10 gettext-base_0.18.1.1-10 gfortran_4:4.6.3-8 gfortran-4.6_4.6.4-2 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.14-1 groff-base_1.22.2-2 gzip_1.5-1.1 hostname_3.12 html2text_1.3.2a-15 initscripts_2.88dsf-41 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.8 libasprintf-dev_0.18.1.1-10 libasprintf0c2_0.18.1.1-10 libattr1_1:2.4.46-8 libblas-dev_1.2.20110419-5 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.3 libbz2-1.0_1.0.6-4 libbz2-dev_1.0.6-4 libc-bin_2.13-38 libc-dev-bin_2.17-2 libc6_2.17-2 libc6-dev_2.17-2 libc6-dev-sparc64_2.17-2 libc6-sparc64_2.17-2 libcairo2_1.12.14-4 libclass-isa-perl_0.36-5 libcomerr2_1.42.5-1.1 libcroco3_0.6.6-2 libdatrie1_0.2.6-2 libdb5.1_5.1.29-5 libdpkg-perl_1.16.10 libexpat1_2.1.0-3 libffi6_3.0.13-4 libfontconfig1_2.9.0-7.1 libfreetype6_2.4.9-1.1 libgc1c2_1:7.1-9.1 libgcc1_1:4.8.0-7 libgdbm3_1.8.3-11 libgettextpo-dev_0.18.1.1-10 libgettextpo0_0.18.1.1-10 libgfortran3_4.8.0-7 libglib2.0-0_2.36.1-2build1 libgmp10_2:5.1.1+dfsg-3 libgomp1_4.8.0-7 libice6_2:1.0.8-2 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.4.2+dfsg-1 liblapack3_3.4.2+dfsg-1 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-1 libmount1_2.20.1-5.3 libmpc2_0.9-4 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libncurses5_5.9+20130504-1 libncurses5-dev_5.9+20130504-1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.31-2 libpcre3-dev_1:8.31-2 libpcrecpp0_1:8.31-2 libpipeline1_1.2.3-1 libpixman-1-0_0.26.0-4 libpng12-0_1.2.49-4 libpng12-dev_1.2.49-4 libreadline-dev_6.2+dfsg-0.1 libreadline6_6.2+dfsg-0.1 libreadline6-dev_6.2+dfsg-0.1 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.9-1 libsm6_2:1.2.1-2 libss2_1.42.5-1.1 libstdc++6_4.8.0-7 libstdc++6-4.6-dev_4.6.4-2 libswitch-perl_2.16-2 libthai-data_0.1.19-2 libthai0_0.1.19-2 libtiff5_4.0.2-6 libtimedate-perl_1.2000-1 libtinfo-dev_5.9+20130504-1 libtinfo5_5.9+20130504-1 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23+nmu1 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.3 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-2 libxcb-shm0_1.8.1-2 libxcb1_1.8.1-2 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-7+nmu1 libxrender1_1:0.9.7-1 libxss1_1:1.2.2-1 libxt6_1:1.1.3-1 linux-libc-dev_3.2.41-2 login_1:4.1.5.1-1 lsb-base_4.1+Debian9 make_3.81-8.2 man-db_2.6.3-6 mawk_1.3.3-17 mount_2.20.1-5.3 multiarch-support_2.13-38 ncurses-base_5.9-10 ncurses-bin_5.9+20130504-1 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-21 perl-base_5.14.2-21 perl-modules_5.14.2-21 po-debconf_1.0.16+nmu2 r-base-core_3.0.1-1 r-base-dev_3.0.1-1 readline-common_6.2+dfsg-0.1 sed_4.2.2-1 sensible-utils_0.0.7 sudo_1.8.5p2-1+nmu1 sysv-rc_2.88dsf-41 sysvinit_2.88dsf-41 sysvinit-utils_2.88dsf-41 tar_1.26+dfsg-5 tcl8.5_8.5.11-2 tk8.5_8.5.11-2 ttf-dejavu-core_2.33+svn2514-3 tzdata_2013b-2 ucf_3.0025+nmu3 unzip_6.0-9 util-linux_2.20.1-5.3 x11-common_1:7.7+3 xdg-utils_1.1.0~rc1+git20111210-7 xz-utils_5.1.1alpha+20120614-2 zip_3.0-7 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -616,12 +671,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Apr 12 02:45:32 2012 UTC using RSA key ID 2295D502
+gpgv: Signature made Thu May 16 14:46:42 2013 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.12.0~dfsg-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.12.0~dfsg
-dpkg-source: info: unpacking r-bioc-limma_3.12.0~dfsg.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.12.0~dfsg-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.16.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.16.3~dfsg
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-limma_3.16.3~dfsg-1.debian.tar.gz
Check disc space
────────────────
@@ -631,27 +686,12 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.12.0~dfsg-1
- dpkg-source --before-build r-bioc-limma-3.12.0~dfsg
+dpkg-buildpackage: source version 3.16.3~dfsg-1
+ dpkg-source --before-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: host architecture sparc
fakeroot debian/rules clean
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
-/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-sparc-Zs4wWP/r-bioc-limma-3.12.0~dfsg'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-sparc-Zs4wWP/r-bioc-limma-3.12.0~dfsg'
-if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "reverse-patches" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-for dir in debian/patches ; do \
- rm -f $dir/*.log ; \
- done
dh_clean
rm -f debian/r-bioc-limma.substvars
rm -f debian/r-bioc-limma.*.debhelper
@@ -672,26 +712,9 @@ if test -d src; then \
fi
rm -f config.log config.status
debian/rules build-arch
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
-/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-sparc-Zs4wWP/r-bioc-limma-3.12.0~dfsg'
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-sparc-Zs4wWP/r-bioc-limma-3.12.0~dfsg'
-if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
-patches:
-if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
-if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
- /usr/bin/make -f debian/rules update-config ; \
- fi
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-sparc-Zs4wWP/r-bioc-limma-3.12.0~dfsg'
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-sparc-Zs4wWP/r-bioc-limma-3.12.0~dfsg'
fakeroot debian/rules binary-arch
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
@@ -703,26 +726,26 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
install -d debian/r-bioc-limma/usr/lib/R/site-library
-echo "R:Depends=r-base-core (>= 2.15.0-1)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 3.0.1-1)" >> debian/r-bioc-limma.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-sparc-Zs4wWP/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-sparc-dGuCDq/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.12.0~dfsg-1-sparc-Zs4wWP/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.16.3~dfsg-1-sparc-dGuCDq/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-sparc-Zs4wWP/r-bioc-limma-3.12.0~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-sparc-dGuCDq/r-bioc-limma-3.16.3~dfsg/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fPIC -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-sparc-Zs4wWP/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-sparc-Zs4wWP/r-bioc-limma-3.12.0~dfsg/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.12.0~dfsg-1-sparc-Zs4wWP/r-bioc-limma-3.12.0~dfsg/src'
-installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-sparc-Zs4wWP/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-sparc-dGuCDq/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-sparc-dGuCDq/r-bioc-limma-3.16.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.16.3~dfsg-1-sparc-dGuCDq/r-bioc-limma-3.16.3~dfsg/src'
+installing to /build/buildd-r-bioc-limma_3.16.3~dfsg-1-sparc-dGuCDq/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -730,22 +753,27 @@ installing to /build/buildd-r-bioc-limma_3.12.0~dfsg-1-sparc-Zs4wWP/r-bioc-limma
*** installing help indices
** building package indices
** installing vignettes
- 'limma.Rnw'
** testing if installed package can be loaded
-
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.12.0~dfsg-1-sparc-Zs4wWP/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-sparc-Zs4wWP/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-sparc-Zs4wWP/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.16.3~dfsg-1-sparc-dGuCDq/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-sparc-dGuCDq/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-sparc-dGuCDq/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.12.0~dfsg-1-sparc-Zs4wWP/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.16.3~dfsg-1-sparc-dGuCDq/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.12.0~dfsg-1-sparc-Zs4wWP/r-bioc-limma-3.12.0~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.16.3~dfsg-1-sparc-dGuCDq/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/CITATION
+chmod 644 debian/r-bioc-limma/usr/lib/R/site-library/limma/doc/*
dh_installdocs -pr-bioc-limma
install -g 0 -o 0 -d debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-limma_3.16.3~dfsg-1-sparc-dGuCDq/r-bioc-limma-3.16.3~dfsg/debian/r-bioc-limma/usr/share/doc/r-bioc-limma \;
+ cp -a debian/README.test debian/r-bioc-limma/usr/share/doc/r-bioc-limma
+ chown -R 0:0 debian/r-bioc-limma/usr/share/doc
+ chmod -R go=rX debian/r-bioc-limma/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-limma/usr/share/doc
install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-limma/usr/share/doc/r-bioc-limma/README.Debian
install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-limma/usr/share/doc/r-bioc-limma/copyright
dh_installexamples -pr-bioc-limma
@@ -777,9 +805,9 @@ dh_strip -pr-bioc-limma
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-limma/usr/lib/R/site-library/limma/libs/limma.so
dh_compress -pr-bioc-limma
cd debian/r-bioc-limma
- chmod a-x usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/changelog.Debian
- gzip -9nf usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/changelog.Debian
- cd '/build/buildd-r-bioc-limma_3.12.0~dfsg-1-sparc-Zs4wWP/r-bioc-limma-3.12.0~dfsg'
+ chmod a-x usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save usr/share/doc/r-bioc-limma/tests/limma-Tests.R
+ gzip -9nf usr/share/doc/r-bioc-limma/changelog.Debian usr/share/doc/r-bioc-limma/changelog usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save usr/share/doc/r-bioc-limma/tests/limma-Tests.R
+ cd '/build/buildd-r-bioc-limma_3.16.3~dfsg-1-sparc-dGuCDq/r-bioc-limma-3.16.3~dfsg'
dh_fixperms -pr-bioc-limma
find debian/r-bioc-limma -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/r-bioc-limma ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -801,6 +829,7 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
echo misc:Depends= >> debian/r-bioc-limma.substvars
dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-limma.substvars -Pdebian/r-bioc-limma
+dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
chmod 644 debian/r-bioc-limma/DEBIAN/control
chown 0:0 debian/r-bioc-limma/DEBIAN/control
dh_md5sums -pr-bioc-limma
@@ -809,62 +838,79 @@ dh_md5sums -pr-bioc-limma
chown 0:0 debian/r-bioc-limma/DEBIAN/md5sums
dh_builddeb -pr-bioc-limma
dpkg-deb --build debian/r-bioc-limma ..
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.12.0~dfsg-1_sparc.deb'.
- dpkg-genchanges -B -msparc Build Daemon (schroeder) <buildd_sparc-schroeder at buildd.debian.org> >../r-bioc-limma_3.12.0~dfsg-1_sparc.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.16.3~dfsg-1_sparc.deb'.
+ dpkg-genchanges -B -msparc Build Daemon (lebrun) <buildd_sparc-lebrun at buildd.debian.org> >../r-bioc-limma_3.16.3~dfsg-1_sparc.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.12.0~dfsg
+ dpkg-source --after-build r-bioc-limma-3.16.3~dfsg
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120412-0337
+Build finished at 20130516-2351
-r-bioc-limma_3.12.0~dfsg-1_sparc.changes:
+r-bioc-limma_3.16.3~dfsg-1_sparc.changes:
Format: 1.8
-Date: Thu, 12 Apr 2012 11:40:40 +0900
+Date: Thu, 16 May 2013 15:16:13 +0200
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: sparc
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
Distribution: sid
Urgency: low
-Maintainer: sparc Build Daemon (schroeder) <buildd_sparc-schroeder at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Maintainer: sparc Build Daemon (lebrun) <buildd_sparc-lebrun at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.12.0~dfsg-1) unstable; urgency=low
+ r-bioc-limma (3.16.3~dfsg-1) unstable; urgency=low
.
[ Charles Plessy ]
- 2d3420e Imported Upstream version 3.12.0~dfsg
- 4bbb8e4 Document LIMMA's copyright as a whole.
+ ff8c6db Imported Upstream version 3.12.1~dfsg
+ b4f097e Effective license is GPL-2, without the '+', as R is GPL-2.
.
[ Andreas Tille ]
- 8a61a4c Obtain references from inst/CITATION
+ * Imported new upstream version 3.16.3~dfsg
+ * debian/control
+ - added myself to Uploaders
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - Fake normalisation as it is done by `cme fix dpkg-control`
+ (the command did actually no change - the control file was
+ brought into shape manually)
+ - Removed versioned dependency of r-base-dev
+ * debian/copyright:
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - checked new upstream version and bumped version number
+ - Add years to Copyright fields
+ * debian/rules: Remove executable flag from doc files
+ * debian/source/format: Add explicit source format specification
Checksums-Sha1:
- 2b6e2351bf3b1e03b660649ec5c47f1c0ed2ca1c 808474 r-bioc-limma_3.12.0~dfsg-1_sparc.deb
+ fe525ca6a2c5907237b255283b2092eeb3163358 1616754 r-bioc-limma_3.16.3~dfsg-1_sparc.deb
Checksums-Sha256:
- 99b52f4aac04bfb89e7069dcaa7ccc76113e73fa91ca4d56a9666603d675fa82 808474 r-bioc-limma_3.12.0~dfsg-1_sparc.deb
+ 5b5886331914770c6d8b531e03365a02b4ea55ace88db9ea6d915bbb15f8ac5f 1616754 r-bioc-limma_3.16.3~dfsg-1_sparc.deb
Files:
- a093cceedc93b19715a1f0608f8cb0a2 808474 gnu-r optional r-bioc-limma_3.12.0~dfsg-1_sparc.deb
+ 2936eb726ac07bc09ca48be665bcd669 1616754 gnu-r optional r-bioc-limma_3.16.3~dfsg-1_sparc.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.12.0~dfsg-1_sparc.deb
+r-bioc-limma_3.16.3~dfsg-1_sparc.deb
────────────────────────────────────
new debian package, version 2.0.
- size 808474 bytes: control archive= 1540 bytes.
+ size 1616754 bytes: control archive= 1667 bytes.
773 bytes, 16 lines control
- 2290 bytes, 30 lines md5sums
+ 2621 bytes, 34 lines md5sums
Package: r-bioc-limma
- Version: 3.12.0~dfsg-1
+ Version: 3.16.3~dfsg-1
Architecture: sparc
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 982
- Depends: libc6 (>= 2.6), r-base-core (>= 2.15.0-1)
+ Installed-Size: 1845
+ Depends: libc6 (>= 2.6), r-base-core (>= 3.0.1-1)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -876,51 +922,56 @@ r-bioc-limma_3.12.0~dfsg-1_sparc.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/share/
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 27996 2012-03-30 22:32 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 2457 2012-04-12 03:36 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 264 2012-04-12 03:36 ./usr/share/doc/r-bioc-limma/README.Debian
--rw-r--r-- root/root 683 2012-04-12 03:36 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/lib/
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/lib/R/
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 9754 2012-04-12 03:37 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 1179 2012-04-12 03:37 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 35015 2012-04-12 03:37 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1901 2012-04-12 03:37 ./usr/lib/R/site-library/limma/NAMESPACE
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 6317 2012-04-12 03:37 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 3343 2012-04-12 03:37 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 472630 2012-04-12 03:37 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 1367 2012-04-12 03:37 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 2431 2012-04-12 03:37 ./usr/lib/R/site-library/limma/help/aliases.rds
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 91993 2012-04-12 03:37 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 1711 2012-04-12 03:37 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rwxr-xr-x root/root 673 2012-04-12 03:37 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 42743 2012-04-12 03:37 ./usr/lib/R/site-library/limma/doc/limma.pdf
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 6157 2012-04-12 03:37 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5727 2012-04-12 03:37 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 220 2012-04-12 03:37 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 521 2012-04-12 03:37 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 2943 2012-04-12 03:37 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 1054 2012-04-12 03:37 ./usr/lib/R/site-library/limma/Meta/package.rds
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 3831 2012-04-12 03:37 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 202045 2012-04-12 03:37 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 383 2012-04-12 03:37 ./usr/lib/R/site-library/limma/R/limma
--rwxr-xr-x root/root 1230 2012-04-12 03:37 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2012-04-12 03:37 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 8168 2012-04-12 03:37 ./usr/lib/R/site-library/limma/libs/limma.so
--rw-r--r-- root/root 3989 2012-04-12 03:37 ./usr/lib/R/site-library/limma/NEWS.Rd
--rw-r--r-- root/root 970 2012-04-12 03:37 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2013-05-16 23:51 ./
+drwxr-xr-x root/root 0 2013-05-16 23:51 ./usr/
+drwxr-xr-x root/root 0 2013-05-16 23:51 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-16 23:51 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-16 23:51 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 437 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.test
+-rw-r--r-- root/root 264 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/README.Debian
+-rw-r--r-- root/root 2605 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 31097 2013-05-02 00:02 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 1153 2013-05-16 14:44 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2013-05-16 23:51 ./usr/share/doc/r-bioc-limma/tests/
+-rw-r--r-- root/root 2097 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.R.gz
+-rw-r--r-- root/root 14649 2013-04-03 22:18 ./usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save.gz
+drwxr-xr-x root/root 0 2013-05-16 23:51 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-16 23:51 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-16 23:51 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-16 23:51 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 2046 2013-05-16 23:51 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 10085 2013-05-16 23:51 ./usr/lib/R/site-library/limma/INDEX
+-rw-r--r-- root/root 991 2013-05-16 23:51 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2013-05-16 23:51 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1397 2013-05-16 23:51 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 2567 2013-05-16 23:51 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 3418 2013-05-16 23:51 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 494512 2013-05-16 23:51 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 6703 2013-05-16 23:51 ./usr/lib/R/site-library/limma/help/AnIndex
+drwxr-xr-x root/root 0 2013-05-16 23:51 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 1056 2013-05-16 23:51 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 4117 2013-05-16 23:51 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 206551 2013-05-16 23:51 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 963 2013-05-16 23:51 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2013-05-16 23:51 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 45597 2013-05-16 23:51 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 102936 2013-05-16 23:51 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 673 2013-05-16 23:51 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 1711 2013-05-16 23:51 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 806089 2013-05-16 23:51 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+drwxr-xr-x root/root 0 2013-05-16 23:51 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 219 2013-05-16 23:51 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 5944 2013-05-16 23:51 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 541 2013-05-16 23:51 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 3089 2013-05-16 23:51 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 6375 2013-05-16 23:51 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 1069 2013-05-16 23:51 ./usr/lib/R/site-library/limma/Meta/package.rds
+drwxr-xr-x root/root 0 2013-05-16 23:51 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8168 2013-05-16 23:51 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2013-05-16 23:51 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2013-05-16 23:51 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 37337 2013-05-16 23:51 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 11214 2013-05-16 23:51 ./usr/lib/R/site-library/limma/NEWS.Rd
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -934,7 +985,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-sparc-sbuild-5ea088ab-1a75-4319-b695-fc31d0735d4d/build/buildd-r-bioc-limma_3.12.0~dfsg-1-sparc-Zs4wWP
+Purging /var/lib/schroot/mount/sid-sparc-sbuild-2cedecfb-33cf-4e38-926f-87c666e90b84/build/buildd-r-bioc-limma_3.16.3~dfsg-1-sparc-dGuCDq
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -942,18 +993,18 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: sparc
-Build-Space: 3268
-Build-Time: 59
+Build-Space: 5880
+Build-Time: 51
Distribution: sid
-Install-Time: 207
-Job: r-bioc-limma_3.12.0~dfsg-1
+Install-Time: 274
+Job: r-bioc-limma_3.16.3~dfsg-1
Package: r-bioc-limma
-Package-Time: 327
-Source-Version: 3.12.0~dfsg-1
-Space: 3268
+Package-Time: 410
+Source-Version: 3.16.3~dfsg-1
+Space: 5880
Status: successful
-Version: 3.12.0~dfsg-1
+Version: 3.16.3~dfsg-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120412-0337
-Build needed 00:05:27, 3268k disc space
-Signature with key '24E4F805' requested:
+Finished at 20130516-2351
+Build needed 00:06:50, 5880k disc space
+Signature with key 'B16CDE7F' requested:
--
linear models for microarray data
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