[med-svn] [r-bioc-edger] branch master updated (ae81c49 -> 027cfce)

[Charles Plessy]

This is an automated email from the git hooks/post-receive script.

plessy pushed a change to branch master
in repository r-bioc-edger.

      from  ae81c49   Upload to unstable
       new  543a589   Imported Upstream version 3.2.4~dfsg
       new  93a34f5   Merge tag 'upstream/3.2.4_dfsg'
       new  c0dc75c   New upstream release (license changed to GPL-2+ between versions 2.6.1 and 3.2.3).
       new  846128f   Normalised VCS URLs.
       new  735a2e9   Signal autopkgtest suite with XS-Testsuite in source package control file.
       new  a429231   Correct the autopkgtest as the test files are compressed.
       new  027cfce   r-bioc-edger (3.2.4~dfsg-1) unstable; urgency=low

The 7 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION            |    6 ++---
 NAMESPACE              |   13 ++++++-----
 R/S3methods.R          |   49 +++++++++++++++++++++++++++++++++++++++
 R/calcNormFactors.R    |   22 ++++++++++++------
 R/classes.R            |   59 ++++++++++++++---------------------------------
 R/cutWithMinN.R        |    2 +-
 R/dispBinTrend.R       |   22 ++++++++++++++----
 R/estimateDisp.R       |    6 ++++-
 R/plotMDS.DGEList.R    |   13 +++++------
 R/subsetting.R         |   42 +++++++++++++++++++++++----------
 R/topTags.R            |   46 -------------------------------------
 debian/README.test     |   27 ++++++----------------
 debian/changelog       |    9 ++++++++
 debian/control         |    5 ++--
 debian/copyright       |   30 ++++++++++++------------
 debian/tests/upstream  |   10 ++++----
 inst/NEWS.Rd           |   29 +++++++++++++++++++++++
 inst/doc/edgeR.pdf     |  Bin 49354 -> 49354 bytes
 man/DGEExact-class.Rd  |   32 ++++++++++++++++++--------
 man/DGEGLM-class.Rd    |   60 ++++++++++++++++++++++++++++++++++++++++++++++++
 man/DGEGLM.Rd          |   51 ----------------------------------------
 man/DGELRT-class.Rd    |   57 +++++++++++++++++++++++++++++++++++++++++++++
 man/DGELRT.Rd          |   46 -------------------------------------
 man/DGEList-class.Rd   |   11 ++++++---
 man/camera.DGEList.Rd  |   14 ++++-------
 man/cutWithMinN.Rd     |   11 +++++----
 man/dimnames.Rd        |   21 ++++++++---------
 man/dispBinTrend.Rd    |    3 +--
 man/glmfit.Rd          |    2 +-
 man/plotMDS.DGEList.Rd |    8 +------
 man/roast.DGEList.Rd   |   29 +++++++----------------
 man/topTags.Rd         |   19 +++++++++++----
 src/core/glm.h         |    1 +
 33 files changed, 415 insertions(+), 340 deletions(-)
 create mode 100644 R/S3methods.R
 create mode 100644 man/DGEGLM-class.Rd
 delete mode 100644 man/DGEGLM.Rd
 create mode 100644 man/DGELRT-class.Rd
 delete mode 100644 man/DGELRT.Rd

-- 
Alioth's /git/debian-med/git-commit-notice on /srv/git.debian.org/git/debian-med/r-bioc-edger.git