[med-svn] [r-bioc-edger] 06/07: Correct the autopkgtest as the test files are compressed.

[Charles Plessy]

This is an automated email from the git hooks/post-receive script.

plessy pushed a commit to branch master
in repository r-bioc-edger.

commit a429231dc83bb969058de23a084238054c5da948
Author: Charles Plessy <plessy at debian.org>
Date:   Mon Aug 5 19:25:48 2013 +0900

    Correct the autopkgtest as the test files are compressed.
---
 debian/README.test    |   27 +++++++--------------------
 debian/tests/upstream |   10 ++++++----
 2 files changed, 13 insertions(+), 24 deletions(-)

diff --git a/debian/README.test b/debian/README.test
index 292a69a..d5cebd2 100644
--- a/debian/README.test
+++ b/debian/README.test
@@ -1,23 +1,10 @@
-Notes on how to test this package.
-──────────────────────────────────
+Notes on how this package is tested.
+────────────────────────────────────
 
-Upstream regression tests and reference output are available in
-‘/usr/share/doc/r-bioc-edger/tests/’.  The following command runs the tests in
-the current directory and compares their output to the reference.
+After building on the maintainer's computer, this package was tested
+with autopkgtest (see http://dep.debian.net/deps/dep8/), using the
+following commands. 
 
-Do not run them in a directory where you have another R session, as it will be
-deleted.
+sudo adt-run --no-built-binaries foo.dsc --- adt-virt-null
 
-for test in /usr/share/doc/r-bioc-edger/tests/*R
-do
-  R CMD BATCH ${test}
-  R CMD Rdiff ${test}out.save* `basename ${test}out`
-  rm `basename ${test}out` .RData
-done
-
-Successful tests produce no output.
-
-This sequence of tests is also implemented debian/tests/with-example-data
-in the source package.
-
- -- Charles Plessy <plessy at debian.org>  Fri, 03 Jun 2011 15:07:07 +0900
+ -- Charles Plessy <plessy at debian.org>  Mon, 05 Aug 2013 19:25:20 +0900
diff --git a/debian/tests/upstream b/debian/tests/upstream
index 5703b0b..d11cae7 100755
--- a/debian/tests/upstream
+++ b/debian/tests/upstream
@@ -4,11 +4,13 @@ TEMPORARY_DIR=$(mktemp -d)
 
 cd $TEMPORARY_DIR
 
-for test in /usr/share/doc/r-bioc-edger/tests/*R
+cp /usr/share/doc/r-bioc-limma/tests/* .
+for test in *R.gz
 do
-  R CMD BATCH ${test}
-  R CMD Rdiff ${test}out.save* `basename ${test}out`
-  rm `basename ${test}out` .RData
+  zcat ${test} > `basename ${test} .gz`
+  R CMD BATCH `basename ${test} .gz`
+  R CMD Rdiff `basename ${test} .gz`out.save* `basename ${test} .gz`out
+  rm `basename ${test} .gz`out .RData
 done
 
 cd -

-- 
Alioth's /git/debian-med/git-commit-notice on /srv/git.debian.org/git/debian-med/r-bioc-edger.git