[med-svn] [r-bioc-edger] 01/02: Build logs for version 3.2.3~dfsg-1
Charles Plessy
plessy at alioth.debian.org
Mon Aug 5 10:36:06 UTC 2013
This is an automated email from the git hooks/post-receive script.
plessy pushed a commit to branch meta
in repository r-bioc-edger.
commit f82d9cfc5bcbf94d67d45b9b377befb5aab06606
Author: Charles Plessy <plessy at debian.org>
Date: Mon Aug 5 19:31:48 2013 +0900
Build logs for version 3.2.3~dfsg-1
---
armel.log | 929 ++++++++++++++++++++++++
armhf.log | 1012 ++++++++++++++++++++++++++
i386.log | 923 ++++++++++++++++++++++++
ia64.log | 1012 ++++++++++++++++++++++++++
info | 14 +
kfreebsd-amd64.log | 1032 +++++++++++++++++++++++++++
kfreebsd-i386.log | 1023 ++++++++++++++++++++++++++
mips.log | 1834 +++++++++++++++++++++++++++++++++++++++++++++++
mipsel.log | 903 +++++++++++++++++++++++
powerpc.log | 1010 ++++++++++++++++++++++++++
s390.log | 2022 ++++++++++++++++++++++++++++++++++++++++++++++++++++
s390x.log | 1011 ++++++++++++++++++++++++++
sparc.log | 1038 +++++++++++++++++++++++++++
13 files changed, 13763 insertions(+)
diff --git a/armel.log b/armel.log
new file mode 100644
index 0000000..ddb1fa1
--- /dev/null
+++ b/armel.log
@@ -0,0 +1,929 @@
+From buildd at alwyn.debian.org Tue May 21 15:43:39 2013
+Return-path: <buildd at alwyn.debian.org>
+Received: from mailly.debian.org ([82.195.75.114])
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+ for logs at buildd.debian.org; Tue, 21 May 2013 15:43:39 +0000
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+ for logs at buildd.debian.org; Tue, 21 May 2013 15:43:38 +0000
+Received: from buildd by alwyn.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at alwyn.debian.org>)
+ id 1Ueoiv-0000XO-3n; Tue, 21 May 2013 15:43:37 +0000
+Date: Tue, 21 May 2013 15:43:37 +0000
+Message-Id: <E1Ueoiv-0000XO-3n at alwyn.debian.org>
+From: buildd on alwyn <buildd at alwyn.debian.org>
+To: buildd-porters at alwyn.debian.org,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-edger_3.2.3~dfsg-1 on armel
+ (dist=sid)
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on alwyn.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-edger 3.2.3~dfsg-1 (armel) 21 May 2013 15:33 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-edger
+Version: 3.2.3~dfsg-1
+Source Version: 3.2.3~dfsg-1
+Architecture: armel
+Get:1 http://ftp.uk.debian.org unstable InRelease [205 kB]
+Get:2 http://incoming.debian.org unstable InRelease [205 kB]
+Get:3 http://ftp.uk.debian.org unstable/main Sources [6720 kB]
+Get:4 http://incoming.debian.org buildd-unstable InRelease [111 kB]
+Get:5 http://incoming.debian.org unstable/main Sources [6723 kB]
+Get:6 http://ftp.uk.debian.org unstable/contrib Sources [54.2 kB]
+Get:7 http://ftp.uk.debian.org unstable/non-free Sources [103 kB]
+Get:8 http://ftp.uk.debian.org unstable/main armel Packages [6196 kB]
+Get:9 http://incoming.debian.org unstable/contrib Sources [54.2 kB]
+Get:10 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:11 http://incoming.debian.org unstable/main armel Packages [6198 kB]
+Get:12 http://ftp.uk.debian.org unstable/contrib armel Packages [37.2 kB]
+Get:13 http://incoming.debian.org unstable/contrib armel Packages [37.2 kB]
+Get:14 http://incoming.debian.org buildd-unstable/main Sources [91.8 kB]
+Get:15 http://incoming.debian.org buildd-unstable/contrib Sources [935 B]
+Get:16 http://incoming.debian.org buildd-unstable/non-free Sources [14 B]
+Get:17 http://incoming.debian.org buildd-unstable/main armel Packages [89.8 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib armel Packages [14 B]
+Fetched 26.9 MB in 1min 42s (263 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-edger' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/debian-med/r-bioc-edger.git
+Need to get 1218 kB of source archives.
+Get:1 http://ftp.uk.debian.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (dsc) [1445 B]
+Get:2 http://ftp.uk.debian.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (tar) [1212 kB]
+Get:3 http://ftp.uk.debian.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (diff) [4311 B]
+Fetched 1218 kB in 0s (1499 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.6)
+fakeroot: already installed (1.18.4-2)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-edger build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev, r-bioc-limma
+Checking for already installed dependencies...
+base-files: already installed (7.2)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2+dfsg-1)
+bsdutils: already installed (1:2.20.1-5.4)
+coreutils: already installed (8.13-3.3)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1.1)
+findutils: already installed (4.4.2-5)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+libc-bin: already installed (2.17-2)
+login: already installed (1:4.1.5.1-1)
+mount: already installed (2.20.1-5.4)
+ncurses-base: already installed (5.9+20130504-1)
+ncurses-bin: already installed (5.9+20130504-1)
+perl-base: already installed (5.14.2-21)
+sed: already installed (4.2.2-1)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-5)
+util-linux: already installed (2.20.1-5.4)
+libc6-dev: already installed (2.17-2)
+gcc: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
+debhelper: missing
+Using default version 9.20130518
+cdbs: missing
+r-base-dev: missing
+r-bioc-limma: missing
+Checking for dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev r-bioc-limma
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ bsdmainutils file fontconfig fontconfig-config fonts-dejavu-core gettext
+ gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
+ libasprintf-dev libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6
+ libgettextpo-dev libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 libx11-6
+ libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
+ libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
+ tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation devscripts dh-make gettext-doc
+ gfortran-doc gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
+ r-mathlib r-base-html texlive-base texlive-latex-base
+ texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
+ texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
+ texi2html tcl-tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
+ xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
+ x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper file fontconfig fontconfig-config
+ fonts-dejavu-core gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libasprintf-dev libasprintf0c2 libblas-dev
+ libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi6
+ libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0 libgfortran3
+ libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3
+ libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
+ libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff5
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core r-base-dev r-bioc-limma tcl8.5 tk8.5
+ ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+0 upgraded, 82 newly installed, 0 to remove and 16 not upgraded.
+Need to get 54.3 MB of archives.
+After this operation, 121 MB of additional disk space will be used.
+Get:1 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armel 1.2.3-1 [35.9 kB]
+Get:2 http://ftp.uk.debian.org/debian/ unstable/main groff-base armel 1.22.2-2 [674 kB]
+Get:3 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armel 9.0.5 [212 kB]
+Get:4 http://ftp.uk.debian.org/debian/ unstable/main man-db armel 2.6.3-6 [869 kB]
+Get:5 http://ftp.uk.debian.org/debian/ unstable/main libasprintf0c2 armel 0.18.1.1-10 [26.6 kB]
+Get:6 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armel 1:5.14-2 [214 kB]
+Get:7 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armel 2.8.0+dfsg1-7+nmu1 [825 kB]
+Get:8 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 armel 2.1.0-3 [116 kB]
+Get:9 http://ftp.uk.debian.org/debian/ unstable/main libfreetype6 armel 2.4.9-1.1 [402 kB]
+Get:10 http://ftp.uk.debian.org/debian/ unstable/main ucf all 3.0027 [71.4 kB]
+Get:11 http://ftp.uk.debian.org/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
+Get:12 http://ftp.uk.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
+Get:13 http://ftp.uk.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:14 http://ftp.uk.debian.org/debian/ unstable/main libfontconfig1 armel 2.9.0-7.1 [287 kB]
+Get:15 http://ftp.uk.debian.org/debian/ unstable/main libpixman-1-0 armel 0.26.0-4 [414 kB]
+Get:16 http://ftp.uk.debian.org/debian/ unstable/main libpng12-0 armel 1.2.49-4 [182 kB]
+Get:17 http://ftp.uk.debian.org/debian/ unstable/main libxau6 armel 1:1.0.7-1 [17.6 kB]
+Get:18 http://ftp.uk.debian.org/debian/ unstable/main libxdmcp6 armel 1:1.1.1-1 [25.3 kB]
+Get:19 http://ftp.uk.debian.org/debian/ unstable/main libxcb1 armel 1.8.1-2 [42.5 kB]
+Get:20 http://ftp.uk.debian.org/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:21 http://ftp.uk.debian.org/debian/ unstable/main libx11-6 armel 2:1.5.0-1 [840 kB]
+Get:22 http://ftp.uk.debian.org/debian/ unstable/main libxcb-render0 armel 1.8.1-2 [16.4 kB]
+Get:23 http://ftp.uk.debian.org/debian/ unstable/main libxcb-shm0 armel 1.8.1-2 [9964 B]
+Get:24 http://ftp.uk.debian.org/debian/ unstable/main libxext6 armel 2:1.3.1-2 [48.8 kB]
+Get:25 http://ftp.uk.debian.org/debian/ unstable/main libxrender1 armel 1:0.9.7-1 [30.7 kB]
+Get:26 http://ftp.uk.debian.org/debian/ unstable/main libcairo2 armel 1.12.14-4 [959 kB]
+Get:27 http://ftp.uk.debian.org/debian/ unstable/main libffi6 armel 3.0.13-4 [19.6 kB]
+Get:28 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armel 2.36.1-2build1 [1900 kB]
+Get:29 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armel 0.6.8-2 [121 kB]
+Get:30 http://ftp.uk.debian.org/debian/ unstable/main libdatrie1 armel 0.2.6-2 [27.1 kB]
+Get:31 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armel 0.9.3-5 [406 kB]
+Get:32 http://ftp.uk.debian.org/debian/ unstable/main libgettextpo0 armel 0.18.1.1-10 [132 kB]
+Get:33 http://ftp.uk.debian.org/debian/ unstable/main libgfortran3 armel 4.8.0-7 [244 kB]
+Get:34 http://ftp.uk.debian.org/debian/ unstable/main x11-common all 1:7.7+3 [284 kB]
+Get:35 http://ftp.uk.debian.org/debian/ unstable/main libice6 armel 2:1.0.8-2 [56.5 kB]
+Get:36 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8 armel 8d-1 [153 kB]
+Get:37 http://ftp.uk.debian.org/debian/ unstable/main libthai-data all 0.1.19-2 [156 kB]
+Get:38 http://ftp.uk.debian.org/debian/ unstable/main libthai0 armel 0.1.19-2 [40.5 kB]
+Get:39 http://ftp.uk.debian.org/debian/ unstable/main libxft2 armel 2.3.1-1 [56.6 kB]
+Get:40 http://ftp.uk.debian.org/debian/ unstable/main fontconfig armel 2.9.0-7.1 [348 kB]
+Get:41 http://ftp.uk.debian.org/debian/ unstable/main libpango1.0-0 armel 1.30.0-1 [429 kB]
+Get:42 http://ftp.uk.debian.org/debian/ unstable/main libpaper1 armel 1.1.24+nmu2 [22.8 kB]
+Get:43 http://ftp.uk.debian.org/debian/ unstable/main libpcrecpp0 armel 1:8.31-2 [126 kB]
+Get:44 http://ftp.uk.debian.org/debian/ unstable/main libsm6 armel 2:1.2.1-2 [32.5 kB]
+Get:45 http://ftp.uk.debian.org/debian/ unstable/main libjbig0 armel 2.0-2 [30.9 kB]
+Get:46 http://ftp.uk.debian.org/debian/ unstable/main libtiff5 armel 4.0.2-6 [228 kB]
+Get:47 http://ftp.uk.debian.org/debian/ unstable/main libxss1 armel 1:1.2.2-1 [16.6 kB]
+Get:48 http://ftp.uk.debian.org/debian/ unstable/main libxt6 armel 1:1.1.3-1 [180 kB]
+Get:49 http://ftp.uk.debian.org/debian/ unstable/main file armel 1:5.14-2 [53.8 kB]
+Get:50 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armel 0.18.1.1-10 [138 kB]
+Get:51 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.121 [80.5 kB]
+Get:52 http://ftp.uk.debian.org/debian/ unstable/main html2text armel 1.3.2a-15 [97.0 kB]
+Get:53 http://ftp.uk.debian.org/debian/ unstable/main libasprintf-dev armel 0.18.1.1-10 [26.5 kB]
+Get:54 http://ftp.uk.debian.org/debian/ unstable/main libgettextpo-dev armel 0.18.1.1-10 [163 kB]
+Get:55 http://ftp.uk.debian.org/debian/ unstable/main gettext armel 0.18.1.1-10 [1749 kB]
+Get:56 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:57 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:58 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 9.20130518 [708 kB]
+Get:59 http://ftp.uk.debian.org/debian/ unstable/main gfortran-4.6 armel 4.6.4-2 [4846 kB]
+Get:60 http://ftp.uk.debian.org/debian/ unstable/main gfortran armel 4:4.6.3-8 [1130 B]
+Get:61 http://ftp.uk.debian.org/debian/ unstable/main libblas3 armel 1.2.20110419-5 [273 kB]
+Get:62 http://ftp.uk.debian.org/debian/ unstable/main libblas-dev armel 1.2.20110419-5 [279 kB]
+Get:63 http://ftp.uk.debian.org/debian/ unstable/main libbz2-dev armel 1.0.6-4 [33.9 kB]
+Get:64 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8-dev armel 8d-1 [260 kB]
+Get:65 http://ftp.uk.debian.org/debian/ unstable/main liblapack3 armel 3.4.2+dfsg-1 [2223 kB]
+Get:66 http://ftp.uk.debian.org/debian/ unstable/main liblapack-dev armel 3.4.2+dfsg-1 [2567 kB]
+Get:67 http://ftp.uk.debian.org/debian/ unstable/main libtinfo-dev armel 5.9+20130504-1 [93.1 kB]
+Get:68 http://ftp.uk.debian.org/debian/ unstable/main libncurses5-dev armel 5.9+20130504-1 [206 kB]
+Get:69 http://ftp.uk.debian.org/debian/ unstable/main libpaper-utils armel 1.1.24+nmu2 [18.8 kB]
+Get:70 http://ftp.uk.debian.org/debian/ unstable/main libpcre3-dev armel 1:8.31-2 [350 kB]
+Get:71 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armel 1:1.2.8.dfsg-1 [214 kB]
+Get:72 http://ftp.uk.debian.org/debian/ unstable/main libpng12-dev armel 1.2.49-4 [261 kB]
+Get:73 http://ftp.uk.debian.org/debian/ unstable/main libreadline6-dev armel 6.2+dfsg-0.1 [167 kB]
+Get:74 http://ftp.uk.debian.org/debian/ unstable/main libreadline-dev armel 6.2+dfsg-0.1 [896 B]
+Get:75 http://ftp.uk.debian.org/debian/ unstable/main zip armel 3.0-7 [334 kB]
+Get:76 http://ftp.uk.debian.org/debian/ unstable/main unzip armel 6.0-9 [193 kB]
+Get:77 http://ftp.uk.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:78 http://ftp.uk.debian.org/debian/ unstable/main tcl8.5 armel 8.5.11-2 [1573 kB]
+Get:79 http://ftp.uk.debian.org/debian/ unstable/main tk8.5 armel 8.5.11-2 [1132 kB]
+Get:80 http://ftp.uk.debian.org/debian/ unstable/main r-base-core armel 3.0.1-1 [21.4 MB]
+Get:81 http://ftp.uk.debian.org/debian/ unstable/main r-base-dev all 3.0.1-1 [3896 B]
+Get:82 http://ftp.uk.debian.org/debian/ unstable/main r-bioc-limma armel 3.16.3~dfsg-1 [1619 kB]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 54.3 MB in 26s (2050 kB/s)
+Selecting previously unselected package libpipeline1:armel.
+(Reading database ... 10794 files and directories currently installed.)
+Unpacking libpipeline1:armel (from .../libpipeline1_1.2.3-1_armel.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.22.2-2_armel.deb) ...
+Selecting previously unselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_armel.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.3-6_armel.deb) ...
+Selecting previously unselected package libasprintf0c2:armel.
+Unpacking libasprintf0c2:armel (from .../libasprintf0c2_0.18.1.1-10_armel.deb) ...
+Selecting previously unselected package libmagic1:armel.
+Unpacking libmagic1:armel (from .../libmagic1_1%3a5.14-2_armel.deb) ...
+Selecting previously unselected package libxml2:armel.
+Unpacking libxml2:armel (from .../libxml2_2.8.0+dfsg1-7+nmu1_armel.deb) ...
+Selecting previously unselected package libexpat1:armel.
+Unpacking libexpat1:armel (from .../libexpat1_2.1.0-3_armel.deb) ...
+Selecting previously unselected package libfreetype6:armel.
+Unpacking libfreetype6:armel (from .../libfreetype6_2.4.9-1.1_armel.deb) ...
+Selecting previously unselected package ucf.
+Unpacking ucf (from .../archives/ucf_3.0027_all.deb) ...
+Moving old data out of the way
+Selecting previously unselected package fonts-dejavu-core.
+Unpacking fonts-dejavu-core (from .../fonts-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ...
+Selecting previously unselected package libfontconfig1:armel.
+Unpacking libfontconfig1:armel (from .../libfontconfig1_2.9.0-7.1_armel.deb) ...
+Selecting previously unselected package libpixman-1-0:armel.
+Unpacking libpixman-1-0:armel (from .../libpixman-1-0_0.26.0-4_armel.deb) ...
+Selecting previously unselected package libpng12-0:armel.
+Unpacking libpng12-0:armel (from .../libpng12-0_1.2.49-4_armel.deb) ...
+Selecting previously unselected package libxau6:armel.
+Unpacking libxau6:armel (from .../libxau6_1%3a1.0.7-1_armel.deb) ...
+Selecting previously unselected package libxdmcp6:armel.
+Unpacking libxdmcp6:armel (from .../libxdmcp6_1%3a1.1.1-1_armel.deb) ...
+Selecting previously unselected package libxcb1:armel.
+Unpacking libxcb1:armel (from .../libxcb1_1.8.1-2_armel.deb) ...
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ...
+Selecting previously unselected package libx11-6:armel.
+Unpacking libx11-6:armel (from .../libx11-6_2%3a1.5.0-1_armel.deb) ...
+Selecting previously unselected package libxcb-render0:armel.
+Unpacking libxcb-render0:armel (from .../libxcb-render0_1.8.1-2_armel.deb) ...
+Selecting previously unselected package libxcb-shm0:armel.
+Unpacking libxcb-shm0:armel (from .../libxcb-shm0_1.8.1-2_armel.deb) ...
+Selecting previously unselected package libxext6:armel.
+Unpacking libxext6:armel (from .../libxext6_2%3a1.3.1-2_armel.deb) ...
+Selecting previously unselected package libxrender1:armel.
+Unpacking libxrender1:armel (from .../libxrender1_1%3a0.9.7-1_armel.deb) ...
+Selecting previously unselected package libcairo2:armel.
+Unpacking libcairo2:armel (from .../libcairo2_1.12.14-4_armel.deb) ...
+Selecting previously unselected package libffi6:armel.
+Unpacking libffi6:armel (from .../libffi6_3.0.13-4_armel.deb) ...
+Selecting previously unselected package libglib2.0-0:armel.
+Unpacking libglib2.0-0:armel (from .../libglib2.0-0_2.36.1-2build1_armel.deb) ...
+Selecting previously unselected package libcroco3:armel.
+Unpacking libcroco3:armel (from .../libcroco3_0.6.8-2_armel.deb) ...
+Selecting previously unselected package libdatrie1:armel.
+Unpacking libdatrie1:armel (from .../libdatrie1_0.2.6-2_armel.deb) ...
+Selecting previously unselected package libunistring0:armel.
+Unpacking libunistring0:armel (from .../libunistring0_0.9.3-5_armel.deb) ...
+Selecting previously unselected package libgettextpo0:armel.
+Unpacking libgettextpo0:armel (from .../libgettextpo0_0.18.1.1-10_armel.deb) ...
+Selecting previously unselected package libgfortran3:armel.
+Unpacking libgfortran3:armel (from .../libgfortran3_4.8.0-7_armel.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.7+3_all.deb) ...
+Selecting previously unselected package libice6:armel.
+Unpacking libice6:armel (from .../libice6_2%3a1.0.8-2_armel.deb) ...
+Selecting previously unselected package libjpeg8:armel.
+Unpacking libjpeg8:armel (from .../libjpeg8_8d-1_armel.deb) ...
+Selecting previously unselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.19-2_all.deb) ...
+Selecting previously unselected package libthai0:armel.
+Unpacking libthai0:armel (from .../libthai0_0.1.19-2_armel.deb) ...
+Selecting previously unselected package libxft2:armel.
+Unpacking libxft2:armel (from .../libxft2_2.3.1-1_armel.deb) ...
+Selecting previously unselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_armel.deb) ...
+Selecting previously unselected package libpango1.0-0:armel.
+Unpacking libpango1.0-0:armel (from .../libpango1.0-0_1.30.0-1_armel.deb) ...
+Selecting previously unselected package libpaper1:armel.
+Unpacking libpaper1:armel (from .../libpaper1_1.1.24+nmu2_armel.deb) ...
+Selecting previously unselected package libpcrecpp0:armel.
+Unpacking libpcrecpp0:armel (from .../libpcrecpp0_1%3a8.31-2_armel.deb) ...
+Selecting previously unselected package libsm6:armel.
+Unpacking libsm6:armel (from .../libsm6_2%3a1.2.1-2_armel.deb) ...
+Selecting previously unselected package libjbig0:armel.
+Unpacking libjbig0:armel (from .../libjbig0_2.0-2_armel.deb) ...
+Selecting previously unselected package libtiff5:armel.
+Unpacking libtiff5:armel (from .../libtiff5_4.0.2-6_armel.deb) ...
+Selecting previously unselected package libxss1:armel.
+Unpacking libxss1:armel (from .../libxss1_1%3a1.2.2-1_armel.deb) ...
+Selecting previously unselected package libxt6:armel.
+Unpacking libxt6:armel (from .../libxt6_1%3a1.1.3-1_armel.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_1%3a5.14-2_armel.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_armel.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
+Selecting previously unselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_armel.deb) ...
+Selecting previously unselected package libasprintf-dev:armel.
+Unpacking libasprintf-dev:armel (from .../libasprintf-dev_0.18.1.1-10_armel.deb) ...
+Selecting previously unselected package libgettextpo-dev:armel.
+Unpacking libgettextpo-dev:armel (from .../libgettextpo-dev_0.18.1.1-10_armel.deb) ...
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-10_armel.deb) ...
+Selecting previously unselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously unselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_9.20130518_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.4-2_armel.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.3-8_armel.deb) ...
+Selecting previously unselected package libblas3.
+Unpacking libblas3 (from .../libblas3_1.2.20110419-5_armel.deb) ...
+Selecting previously unselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_armel.deb) ...
+Selecting previously unselected package libbz2-dev:armel.
+Unpacking libbz2-dev:armel (from .../libbz2-dev_1.0.6-4_armel.deb) ...
+Selecting previously unselected package libjpeg8-dev:armel.
+Unpacking libjpeg8-dev:armel (from .../libjpeg8-dev_8d-1_armel.deb) ...
+Selecting previously unselected package liblapack3.
+Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_armel.deb) ...
+Selecting previously unselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.4.2+dfsg-1_armel.deb) ...
+Selecting previously unselected package libtinfo-dev:armel.
+Unpacking libtinfo-dev:armel (from .../libtinfo-dev_5.9+20130504-1_armel.deb) ...
+Selecting previously unselected package libncurses5-dev:armel.
+Unpacking libncurses5-dev:armel (from .../libncurses5-dev_5.9+20130504-1_armel.deb) ...
+Selecting previously unselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_armel.deb) ...
+Selecting previously unselected package libpcre3-dev:armel.
+Unpacking libpcre3-dev:armel (from .../libpcre3-dev_1%3a8.31-2_armel.deb) ...
+Selecting previously unselected package zlib1g-dev:armel.
+Unpacking zlib1g-dev:armel (from .../zlib1g-dev_1%3a1.2.8.dfsg-1_armel.deb) ...
+Selecting previously unselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_armel.deb) ...
+Selecting previously unselected package libreadline6-dev:armel.
+Unpacking libreadline6-dev:armel (from .../libreadline6-dev_6.2+dfsg-0.1_armel.deb) ...
+Selecting previously unselected package libreadline-dev:armel.
+Unpacking libreadline-dev:armel (from .../libreadline-dev_6.2+dfsg-0.1_armel.deb) ...
+Selecting previously unselected package zip.
+Unpacking zip (from .../archives/zip_3.0-7_armel.deb) ...
+Selecting previously unselected package unzip.
+Unpacking unzip (from .../archives/unzip_6.0-9_armel.deb) ...
+Selecting previously unselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
+Selecting previously unselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_armel.deb) ...
+Selecting previously unselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_armel.deb) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_3.0.1-1_armel.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_3.0.1-1_all.deb) ...
+Selecting previously unselected package r-bioc-limma.
+Unpacking r-bioc-limma (from .../r-bioc-limma_3.16.3~dfsg-1_armel.deb) ...
+Setting up libpipeline1:armel (1.2.3-1) ...
+Setting up groff-base (1.22.2-2) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.3-6) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:armel (0.18.1.1-10) ...
+Setting up libmagic1:armel (1:5.14-2) ...
+Setting up libxml2:armel (2.8.0+dfsg1-7+nmu1) ...
+Setting up libexpat1:armel (2.1.0-3) ...
+Setting up libfreetype6:armel (2.4.9-1.1) ...
+Setting up ucf (3.0027) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:armel (2.9.0-7.1) ...
+Setting up libpixman-1-0:armel (0.26.0-4) ...
+Setting up libpng12-0:armel (1.2.49-4) ...
+Setting up libxau6:armel (1:1.0.7-1) ...
+Setting up libxdmcp6:armel (1:1.1.1-1) ...
+Setting up libxcb1:armel (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:armel (2:1.5.0-1) ...
+Setting up libxcb-render0:armel (1.8.1-2) ...
+Setting up libxcb-shm0:armel (1.8.1-2) ...
+Setting up libxext6:armel (2:1.3.1-2) ...
+Setting up libxrender1:armel (1:0.9.7-1) ...
+Setting up libcairo2:armel (1.12.14-4) ...
+Setting up libffi6:armel (3.0.13-4) ...
+Setting up libglib2.0-0:armel (2.36.1-2build1) ...
+No schema files found: doing nothing.
+Setting up libcroco3:armel (0.6.8-2) ...
+Setting up libdatrie1:armel (0.2.6-2) ...
+Setting up libunistring0:armel (0.9.3-5) ...
+Setting up libgettextpo0:armel (0.18.1.1-10) ...
+Setting up libgfortran3:armel (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6:armel (2:1.0.8-2) ...
+Setting up libjpeg8:armel (8d-1) ...
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:armel (0.1.19-2) ...
+Setting up libxft2:armel (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
+Regenerating fonts cache... done.
+Setting up libpango1.0-0:armel (1.30.0-1) ...
+Setting up libpaper1:armel (1.1.24+nmu2) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpcrecpp0:armel (1:8.31-2) ...
+Setting up libsm6:armel (2:1.2.1-2) ...
+Setting up libjbig0:armel (2.0-2) ...
+Setting up libtiff5:armel (4.0.2-6) ...
+Setting up libxss1:armel (1:1.2.2-1) ...
+Setting up libxt6:armel (1:1.1.3-1) ...
+Setting up file (1:5.14-2) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libasprintf-dev:armel (0.18.1.1-10) ...
+Setting up libgettextpo-dev:armel (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20130518) ...
+Setting up gfortran-4.6 (4.6.4-2) ...
+Setting up gfortran (4:4.6.3-8) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:armel (1.0.6-4) ...
+Setting up libjpeg8-dev:armel (8d-1) ...
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:armel (5.9+20130504-1) ...
+Setting up libncurses5-dev:armel (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:armel (1:8.31-2) ...
+Setting up zlib1g-dev:armel (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:armel (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:armel (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.1-1) ...
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (3.0.1-1) ...
+Setting up r-bioc-limma (3.16.3~dfsg-1) ...
+Processing triggers for libc-bin ...
+ldconfig deferred processing now taking place
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.32 armel (armv5tel)
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.6_4.6.4-2 gcc-4.6_4.6.4-2 libc6-dev_2.17-2 libstdc++6_4.8.0-7 libstdc++6-4.6-dev_4.6.4-2 linux-libc-dev_3.8.12-1
+Package versions: apt_0.9.8 base-files_7.2 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.4 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.13-3.3 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2 dash_0.5.7-3 debconf_1.5.50 debfoster_2.7-1.2 debhelper_9.20130518 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-2 findutils_4.4.2-5 fontco [...]
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Fri May 17 13:25:10 2013 UTC using DSA key ID C09FD35A
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-edger_3.2.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-edger in r-bioc-edger-3.2.3~dfsg
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg-1.debian.tar.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: source package r-bioc-edger
+dpkg-buildpackage: source version 3.2.3~dfsg-1
+ dpkg-source --before-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: host architecture armel
+ fakeroot debian/rules clean
+test -x debian/rules
+dh_testroot
+dh_clean
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build-arch
+test -x debian/rules
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+ fakeroot debian/rules binary-arch
+test -x debian/rules
+dh_testroot
+dh_prep
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+dh_installdirs -A
+ install -d debian/r-bioc-edger
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-edger/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 3.0.1-1)" >> debian/r-bioc-edger.substvars
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-armel-oNwdP2/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-armel-oNwdP2/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'edgeR' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-armel-oNwdP2/r-bioc-edger-3.2.3~dfsg/src'
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_exact_test_by_deviance.cpp -o R_exact_test_by_deviance.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_loess_by_col.cpp -o R_loess_by_col.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_cr_adjust.cpp -o R_cr_adjust.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_levenberg.cpp -o R_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_maximize_interpolant.cpp -o R_maximize_interpolant.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_one_group.cpp -o R_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_simple_good_turing.cpp -o R_simple_good_turing.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c core/adj_coxreid.cpp -o core/adj_coxreid.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c core/glm_levenberg.cpp -o core/glm_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c core/glm_one_group.cpp -o core/glm_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c core/interpolator.cpp -o core/interpolator.o
+gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c core/fmm_spline.c -o core/fmm_spline.o
+g++ -shared -o edgeR.so R_exact_test_by_deviance.o R_loess_by_col.o R_cr_adjust.o R_levenberg.o R_maximize_interpolant.o R_one_group.o R_simple_good_turing.o core/adj_coxreid.o core/glm_levenberg.o core/glm_one_group.o core/interpolator.o core/fmm_spline.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-armel-oNwdP2/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-armel-oNwdP2/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-armel-oNwdP2/r-bioc-edger-3.2.3~dfsg/src'
+installing to /build/buildd-r-bioc-edger_3.2.3~dfsg-1-armel-oNwdP2/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs
+** R
+** data
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices
+** installing vignettes
+** testing if installed package can be loaded
+* DONE (edgeR)
+rm -vf /build/buildd-r-bioc-edger_3.2.3~dfsg-1-armel-oNwdP2/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-armel-oNwdP2/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/COPYING \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-armel-oNwdP2/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-edger_3.2.3~dfsg-1-armel-oNwdP2/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-armel-oNwdP2/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides/r-bioc-edger; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-edger.substvars
+dh_installdirs -pr-bioc-edger
+chmod 644 debian/r-bioc-edger/usr/lib/R/site-library/edgeR/doc/*
+dh_installdocs -pr-bioc-edger
+ install -g 0 -o 0 -d debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-edger_3.2.3~dfsg-1-armel-oNwdP2/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/doc/r-bioc-edger \;
+ cp -a debian/README.test debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ chown -R 0:0 debian/r-bioc-edger/usr/share/doc
+ chmod -R go=rX debian/r-bioc-edger/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-edger/usr/share/doc
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-edger/usr/share/doc/r-bioc-edger/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-edger/usr/share/doc/r-bioc-edger/copyright
+dh_installexamples -pr-bioc-edger
+dh_installman -pr-bioc-edger
+dh_installinfo -pr-bioc-edger
+dh_installmenu -pr-bioc-edger
+dh_installcron -pr-bioc-edger
+dh_installinit -pr-bioc-edger
+dh_installdebconf -pr-bioc-edger
+ install -o 0 -g 0 -d debian/r-bioc-edger/DEBIAN
+dh_installemacsen -pr-bioc-edger
+dh_installcatalogs -pr-bioc-edger
+ grep -s -v '^misc:Depends=' debian/r-bioc-edger.substvars > debian/r-bioc-edger.substvars.new || true
+ mv debian/r-bioc-edger.substvars.new debian/r-bioc-edger.substvars
+dh_installpam -pr-bioc-edger
+dh_installlogrotate -pr-bioc-edger
+dh_installlogcheck -pr-bioc-edger
+dh_installchangelogs -pr-bioc-edger
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-edger/usr/share/doc/r-bioc-edger/changelog.Debian
+dh_installudev -pr-bioc-edger
+dh_lintian -pr-bioc-edger
+dh_bugfiles -pr-bioc-edger
+dh_install -pr-bioc-edger
+dh_link -pr-bioc-edger
+dh_installmime -pr-bioc-edger
+dh_installgsettings -pr-bioc-edger
+dh_strip -pr-bioc-edger
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dh_compress -pr-bioc-edger
+ cd debian/r-bioc-edger
+ chmod a-x usr/share/doc/r-bioc-edger/changelog.Debian usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save
+ gzip -9nf usr/share/doc/r-bioc-edger/changelog.Debian usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save
+ cd '/build/buildd-r-bioc-edger_3.2.3~dfsg-1-armel-oNwdP2/r-bioc-edger-3.2.3~dfsg'
+dh_fixperms -pr-bioc-edger
+ find debian/r-bioc-edger -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-edger ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-edger/usr/share/doc -type f ! -regex 'debian/r-bioc-edger/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-edger/usr/share/man debian/r-bioc-edger/usr/man/ debian/r-bioc-edger/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/lib/perl5 debian/r-bioc-edger/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-edger/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
+dh_makeshlibs -pr-bioc-edger
+ rm -f debian/r-bioc-edger/DEBIAN/shlibs
+dh_installdeb -pr-bioc-edger
+dh_perl -pr-bioc-edger
+dh_shlibdeps -pr-bioc-edger
+ dpkg-shlibdeps -Tdebian/r-bioc-edger.substvars debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so was not linked against libgfortran.so.3 (it uses none of the library's symbols)
+dh_gencontrol -pr-bioc-edger
+ echo misc:Depends= >> debian/r-bioc-edger.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-edger.substvars -Pdebian/r-bioc-edger
+ chmod 644 debian/r-bioc-edger/DEBIAN/control
+ chown 0:0 debian/r-bioc-edger/DEBIAN/control
+dh_md5sums -pr-bioc-edger
+ (cd debian/r-bioc-edger >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-edger/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-edger/DEBIAN/md5sums
+dh_builddeb -pr-bioc-edger -- -Z xz
+ dpkg-deb -Z xz --build debian/r-bioc-edger ..
+dpkg-deb: building package `r-bioc-edger' in `../r-bioc-edger_3.2.3~dfsg-1_armel.deb'.
+ dpkg-genchanges -B -marmel Build Daemon (alwyn) <buildd_armel-alwyn at buildd.debian.org> >../r-bioc-edger_3.2.3~dfsg-1_armel.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20130521-1543
+
+r-bioc-edger_3.2.3~dfsg-1_armel.changes:
+Format: 1.8
+Date: Fri, 17 May 2013 14:36:51 +0200
+Source: r-bioc-edger
+Binary: r-bioc-edger
+Architecture: armel
+Version: 3.2.3~dfsg-1
+Distribution: sid
+Urgency: low
+Maintainer: armel Build Daemon (alwyn) <buildd_armel-alwyn at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
+Description:
+ r-bioc-edger - Empirical analysis of digital gene expression data in R
+Changes:
+ r-bioc-edger (3.2.3~dfsg-1) unstable; urgency=low
+ .
+ [ Charles Plessy ]
+ 74f1a5f Imported Upstream version 2.6.10~dfsg
+ d2d70ab Corrected VCS URLs.
+ 44c9d4e Regression tests for autopkgtest.
+ .
+ [ Andreas Tille ]
+ * Imported new upstream version 3.2.3~dfsg
+ * debian/control
+ - Added myself as Uploader
+ - Add ${shlibs:Depends} to ensure dependency from libc
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - normalised format
+ - Removed unneeded Pre-Depends: dpkg (>= 1.15.6)
+ - Removed versioned dependency of r-base-dev
+ - Package is "Architecture: any" (rather than all)
+ * debian/source/format: Add explicit source format specification
+ * debian/copyright:
+ - Update Source location
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - Add years to Copyright field
+ * debian/upstream: inst/CITATION asks for citing this more recent
+ paper that is now on top of debian/upstream
+ * debian/rules: remove executable flag from installed documentation
+Checksums-Sha1:
+ 976c25cbd2ea2505281f4a78f693640276f94e95 1363912 r-bioc-edger_3.2.3~dfsg-1_armel.deb
+Checksums-Sha256:
+ ca18c9964160df32563775285f88a07fa0feeb51e0a77e4c4d973b1da2831502 1363912 r-bioc-edger_3.2.3~dfsg-1_armel.deb
+Files:
+ 3b456cb9c05baa89845a392cb1ea1334 1363912 gnu-r optional r-bioc-edger_3.2.3~dfsg-1_armel.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-edger_3.2.3~dfsg-1_armel.deb
+───────────────────────────────────
+
+ new debian package, version 2.0.
+ size 1363912 bytes: control archive= 1863 bytes.
+ 957 bytes, 17 lines control
+ 2932 bytes, 38 lines md5sums
+ Package: r-bioc-edger
+ Version: 3.2.3~dfsg-1
+ Architecture: armel
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 2480
+ Depends: r-base-core (>= 3.0.1-1), r-bioc-limma, libblas3 | libblas.so.3 | libatlas3-base, libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libgfortran3 (>= 4.3), liblapack3 | liblapack.so.3 | libatlas3-base, libstdc++6 (>= 4.4.0)
+ Suggests: r-cran-mass
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
+ Description: Empirical analysis of digital gene expression data in R
+ Bioconductor package for differential expression analysis of whole
+ transcriptome sequencing (RNA-seq) and digital gene expression
+ profiles with biological replication. It uses empirical Bayes
+ estimation and exact tests based on the negative binomial
+ distribution. It is also useful for differential signal analysis with
+ other types of genome-scale count data.
+
+drwxr-xr-x root/root 0 2013-05-21 15:42 ./
+drwxr-xr-x root/root 0 2013-05-21 15:42 ./usr/
+drwxr-xr-x root/root 0 2013-05-21 15:41 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-21 15:41 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-21 15:42 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/
+drwxr-xr-x root/root 0 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/libs/
+-rw-r--r-- root/root 47228 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/libs/edgeR.so
+drwxr-xr-x root/root 0 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/help/
+-rw-r--r-- root/root 3776 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/help/AnIndex
+-rw-r--r-- root/root 230590 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/help/edgeR.rdb
+-rw-r--r-- root/root 1758 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/help/edgeR.rdx
+-rw-r--r-- root/root 1342 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/help/aliases.rds
+-rw-r--r-- root/root 801 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/help/paths.rds
+drwxr-xr-x root/root 0 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/doc/
+-rw-r--r-- root/root 691 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/doc/index.html
+-rw-r--r-- root/root 879697 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/doc/edgeRUsersGuide.pdf
+-rw-r--r-- root/root 1826 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/doc/edgeR.Rnw
+-rw-r--r-- root/root 49354 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/doc/edgeR.pdf
+drwxr-xr-x root/root 0 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/R/
+-rw-r--r-- root/root 1056 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/R/edgeR
+-rw-r--r-- root/root 116073 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/R/edgeR.rdb
+-rw-r--r-- root/root 2290 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/R/edgeR.rdx
+-rw-r--r-- root/root 2057 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/CITATION
+drwxr-xr-x root/root 0 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/Meta/
+-rw-r--r-- root/root 3639 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/Meta/Rd.rds
+-rw-r--r-- root/root 368 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/Meta/nsInfo.rds
+-rw-r--r-- root/root 997 2013-05-21 15:41 ./usr/lib/R/site-library/edgeR/Meta/package.rds
+-rw-r--r-- root/root 3475 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/Meta/hsearch.rds
+-rw-r--r-- root/root 161 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/Meta/data.rds
+-rw-r--r-- root/root 228 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/Meta/vignette.rds
+-rw-r--r-- root/root 1640 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/Meta/links.rds
+drwxr-xr-x root/root 0 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/html/
+-rw-r--r-- root/root 22781 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/html/00Index.html
+-rw-r--r-- root/root 1179 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/html/R.css
+-rw-r--r-- root/root 804 2013-05-21 15:41 ./usr/lib/R/site-library/edgeR/NAMESPACE
+-rw-r--r-- root/root 6834 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/INDEX
+drwxr-xr-x root/root 0 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/data/
+-rw-r--r-- root/root 248500 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/data/NC1.txt
+-rw-r--r-- root/root 263571 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/data/Tu98.txt
+-rw-r--r-- root/root 318545 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/data/Tu102.txt
+-rw-r--r-- root/root 228426 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/data/NC2.txt
+-rw-r--r-- root/root 19 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/data/datalist
+-rw-r--r-- root/root 13746 2013-05-21 15:42 ./usr/lib/R/site-library/edgeR/NEWS.Rd
+-rw-r--r-- root/root 1114 2013-05-21 15:41 ./usr/lib/R/site-library/edgeR/DESCRIPTION
+drwxr-xr-x root/root 0 2013-05-21 15:42 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-21 15:42 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-21 15:42 ./usr/share/doc/r-bioc-edger/
+-rw-r--r-- root/root 1384 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/changelog.Debian.gz
+-rw-r--r-- root/root 274 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.Debian
+drwxr-xr-x root/root 0 2013-05-21 15:42 ./usr/share/doc/r-bioc-edger/tests/
+-rw-r--r-- root/root 5706 2013-04-08 00:02 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save.gz
+-rw-r--r-- root/root 1392 2013-04-03 22:17 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R.gz
+-rw-r--r-- root/root 816 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.test
+-rw-r--r-- root/root 1404 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/copyright
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-armel-sbuild-00eaf4cf-7557-4719-8917-9fcb6c157934/build/buildd-r-bioc-edger_3.2.3~dfsg-1-armel-oNwdP2
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: armel
+Build-Space: 6864
+Build-Time: 171
+Distribution: sid
+Install-Time: 288
+Job: r-bioc-edger_3.2.3~dfsg-1
+Package: r-bioc-edger
+Package-Time: 599
+Source-Version: 3.2.3~dfsg-1
+Space: 6864
+Status: successful
+Version: 3.2.3~dfsg-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20130521-1543
+Build needed 00:09:59, 6864k disc space
+Signature with key '5DFAC0AA' requested:
+
diff --git a/armhf.log b/armhf.log
new file mode 100644
index 0000000..9dd47f6
--- /dev/null
+++ b/armhf.log
@@ -0,0 +1,1012 @@
+From buildd at howells.debian.org Fri May 17 15:16:15 2013
+Return-path: <buildd at howells.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at howells.debian.org>)
+ id 1UdMOE-0002LO-Qs
+ for logs at buildd.debian.org; Fri, 17 May 2013 15:16:15 +0000
+Received: from howells.ynic.york.ac.uk ([144.32.168.75]
+ helo=howells.debian.org)
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=howells.debian.org, EMAIL=hostmaster at howells.debian.org (verified)
+ by merikanto.debian.org with esmtps
+ (TLS1.0:DHE_RSA_AES_128_CBC_SHA1:16) (Exim 4.72)
+ (envelope-from <buildd at howells.debian.org>) id 1UdMOD-0003XJ-OF
+ for logs at buildd.debian.org; Fri, 17 May 2013 15:16:13 +0000
+Received: from buildd by howells.debian.org with local (Exim 4.80)
+ (envelope-from <buildd at howells.debian.org>)
+ id 1UdMOB-00075n-88; Fri, 17 May 2013 15:16:11 +0000
+From: buildd on howells <buildd at howells.debian.org>
+To: logs at buildd.debian.org,buildd-porters at howells.debian.org
+Subject: Log for successful build of r-bioc-edger_3.2.3~dfsg-1 on armhf
+ (dist=sid)
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
+Message-Id: <E1UdMOB-00075n-88 at howells.debian.org>
+Date: Fri, 17 May 2013 15:16:11 +0000
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on howells.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-edger 3.2.3~dfsg-1 (armhf) 17 May 2013 15:04 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-edger
+Version: 3.2.3~dfsg-1
+Source Version: 3.2.3~dfsg-1
+Architecture: armhf
+Get:1 http://ftp.uk.debian.org unstable Release.gpg [1571 B]
+Get:2 http://ftp.uk.debian.org unstable Release [203 kB]
+Get:3 http://incoming.debian.org unstable Release.gpg [1571 B]
+Get:4 http://incoming.debian.org buildd-unstable Release.gpg [1571 B]
+Get:5 http://ftp.uk.debian.org unstable/main Sources [6729 kB]
+Get:6 http://incoming.debian.org unstable Release [203 kB]
+Get:7 http://incoming.debian.org buildd-unstable Release [109 kB]
+Get:8 http://incoming.debian.org unstable/main Sources [6727 kB]
+Get:9 http://ftp.uk.debian.org unstable/contrib Sources [53.7 kB]
+Get:10 http://ftp.uk.debian.org unstable/non-free Sources [103 kB]
+Get:11 http://ftp.uk.debian.org unstable/main armhf Packages [6225 kB]
+Get:12 http://ftp.uk.debian.org unstable/contrib armhf Packages [36.2 kB]
+Get:13 http://incoming.debian.org unstable/contrib Sources [53.7 kB]
+Get:14 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:15 http://incoming.debian.org unstable/main armhf Packages [6224 kB]
+Get:16 http://incoming.debian.org unstable/contrib armhf Packages [36.2 kB]
+Get:17 http://incoming.debian.org buildd-unstable/main Sources [104 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib Sources [873 B]
+Get:19 http://incoming.debian.org buildd-unstable/non-free Sources [2683 B]
+Get:20 http://incoming.debian.org buildd-unstable/main armhf Packages [62.7 kB]
+Get:21 http://incoming.debian.org buildd-unstable/contrib armhf Packages [14 B]
+Fetched 27.0 MB in 2min 2s (219 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-edger' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/debian-med/r-bioc-edger.git
+Need to get 1218 kB of source archives.
+Get:1 http://incoming.debian.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (dsc) [1445 B]
+Get:2 http://incoming.debian.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (tar) [1212 kB]
+Get:3 http://incoming.debian.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (diff) [4311 B]
+Fetched 1218 kB in 5s (213 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.6)
+fakeroot: already installed (1.18.4-2)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 39 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 39 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-edger build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev, r-bioc-limma
+Checking for already installed dependencies...
+base-files: already installed (7.1)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2+dfsg-1)
+bsdutils: already installed (1:2.20.1-5.3)
+coreutils: already installed (8.20-3)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1.1)
+findutils: already installed (4.4.2-5)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+libc-bin: already installed (2.13-38)
+login: already installed (1:4.1.5.1-1)
+mount: already installed (2.20.1-5.3)
+ncurses-base: already installed (5.9-10)
+ncurses-bin: already installed (5.9-10)
+perl-base: already installed (5.14.2-21)
+sed: already installed (4.2.1-10)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-5)
+util-linux: already installed (2.20.1-5.3)
+libc6-dev: already installed (2.13-38)
+gcc: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
+debhelper: missing
+Using default version 9.20130516
+cdbs: missing
+r-base-dev: missing
+r-bioc-limma: missing
+Checking for dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev r-bioc-limma
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ bsdmainutils cpp-4.6 file fontconfig fontconfig-config fonts-dejavu-core
+ g++-4.6 gcc-4.6 gcc-4.6-base gcc-4.8-base gettext gettext-base gfortran
+ gfortran-4.6 groff-base html2text intltool-debian libasprintf-dev
+ libasprintf0c2 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6 libc6-dev
+ libcairo2 libcroco3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6
+ libgettextpo-dev libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libmpc3 libncurses5
+ libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev
+ libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libstdc++6-4.6-dev libthai-data
+ libthai0 libtiff5 libtinfo-dev libtinfo5 libunistring0 libx11-6 libx11-data
+ libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
+ libxml2 libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf r-base-core
+ tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g
+ zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make
+ gcc-4.6-doc libstdc++6-4.6-dbg libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg
+ libquadmath-dbg libmudflap0-dbg libcloog-ppl0 libppl-c2 libppl7
+ binutils-gold gettext-doc gfortran-doc gfortran-4.6-doc libgfortran3-dbg
+ groff glibc-doc ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp
+ libstdc++6-4.6-doc less www-browser libmail-box-perl r-doc-info r-doc-pdf
+ r-mathlib r-base-html texlive-base texlive-latex-base
+ texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
+ texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
+ texi2html tcl-tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev curl wget lynx-cur autopoint manpages-dev libglib2.0-data
+ shared-mime-info libgpm2 xml-core libmail-sendmail-perl r-recommended
+ r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper file fontconfig fontconfig-config
+ fonts-dejavu-core gcc-4.8-base gettext gettext-base gfortran gfortran-4.6
+ groff-base html2text intltool-debian libasprintf-dev libasprintf0c2
+ libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libffi6 libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0
+ libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3 libmagic1 libmpc3 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 libx11-6
+ libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
+ libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
+ r-base-dev r-bioc-limma tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libc-dev-bin libc6 libc6-dev
+ libncurses5 libstdc++6-4.6-dev libtinfo5 ncurses-bin zlib1g
+12 upgraded, 85 newly installed, 0 to remove and 27 not upgraded.
+Need to get 78.0 MB of archives.
+After this operation, 105 MB of additional disk space will be used.
+Get:1 http://ftp.uk.debian.org/debian/ unstable/main libc6-dev armhf 2.17-3 [2373 kB]
+Get:2 http://incoming.debian.org/debian/ unstable/main libcroco3 armhf 0.6.8-2 [121 kB]
+Get:3 http://ftp.uk.debian.org/debian/ unstable/main libc-dev-bin armhf 2.17-3 [224 kB]
+Get:4 http://ftp.uk.debian.org/debian/ unstable/main libc6 armhf 2.17-3 [4015 kB]
+Get:5 http://ftp.uk.debian.org/debian/ unstable/main libtinfo5 armhf 5.9+20130504-1 [279 kB]
+Get:6 http://ftp.uk.debian.org/debian/ unstable/main libncurses5 armhf 5.9+20130504-1 [88.6 kB]
+Get:7 http://ftp.uk.debian.org/debian/ unstable/main ncurses-bin armhf 5.9+20130504-1 [353 kB]
+Get:8 http://ftp.uk.debian.org/debian/ unstable/main zlib1g armhf 1:1.2.8.dfsg-1 [85.3 kB]
+Get:9 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armhf 1.2.3-1 [34.2 kB]
+Get:10 http://ftp.uk.debian.org/debian/ unstable/main groff-base armhf 1.22.2-2 [679 kB]
+Get:11 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armhf 9.0.5 [204 kB]
+Get:12 http://ftp.uk.debian.org/debian/ unstable/main man-db armhf 2.6.3-6 [869 kB]
+Get:13 http://ftp.uk.debian.org/debian/ unstable/main libasprintf0c2 armhf 0.18.1.1-10 [26.8 kB]
+Get:14 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armhf 1:5.14-1 [213 kB]
+Get:15 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armhf 1:8.31-2 [246 kB]
+Get:16 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armhf 2.8.0+dfsg1-7+nmu1 [785 kB]
+Get:17 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 armhf 2.1.0-3 [109 kB]
+Get:18 http://ftp.uk.debian.org/debian/ unstable/main libfreetype6 armhf 2.4.9-1.1 [380 kB]
+Get:19 http://ftp.uk.debian.org/debian/ unstable/main ucf all 3.0025+nmu3 [70.8 kB]
+Get:20 http://ftp.uk.debian.org/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
+Get:21 http://ftp.uk.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
+Get:22 http://ftp.uk.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:23 http://ftp.uk.debian.org/debian/ unstable/main libfontconfig1 armhf 2.9.0-7.1 [280 kB]
+Get:24 http://ftp.uk.debian.org/debian/ unstable/main libpixman-1-0 armhf 0.26.0-4 [405 kB]
+Get:25 http://ftp.uk.debian.org/debian/ unstable/main libpng12-0 armhf 1.2.49-4 [176 kB]
+Get:26 http://ftp.uk.debian.org/debian/ unstable/main libxau6 armhf 1:1.0.7-1 [17.3 kB]
+Get:27 http://ftp.uk.debian.org/debian/ unstable/main libxdmcp6 armhf 1:1.1.1-1 [25.0 kB]
+Get:28 http://ftp.uk.debian.org/debian/ unstable/main libxcb1 armhf 1.8.1-2 [41.6 kB]
+Get:29 http://ftp.uk.debian.org/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:30 http://ftp.uk.debian.org/debian/ unstable/main libx11-6 armhf 2:1.5.0-1 [815 kB]
+Get:31 http://ftp.uk.debian.org/debian/ unstable/main libxcb-render0 armhf 1.8.1-2 [16.2 kB]
+Get:32 http://ftp.uk.debian.org/debian/ unstable/main libxcb-shm0 armhf 1.8.1-2 [9842 B]
+Get:33 http://ftp.uk.debian.org/debian/ unstable/main libxext6 armhf 2:1.3.1-2 [47.6 kB]
+Get:34 http://ftp.uk.debian.org/debian/ unstable/main libxrender1 armhf 1:0.9.7-1 [28.1 kB]
+Get:35 http://ftp.uk.debian.org/debian/ unstable/main libcairo2 armhf 1.12.14-4 [906 kB]
+Get:36 http://ftp.uk.debian.org/debian/ unstable/main libffi6 armhf 3.0.13-4 [18.8 kB]
+Get:37 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armhf 2.36.1-2build1 [1917 kB]
+Get:38 http://ftp.uk.debian.org/debian/ unstable/main libdatrie1 armhf 0.2.6-2 [26.9 kB]
+Get:39 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armhf 0.9.3-5+b1 [404 kB]
+Get:40 http://ftp.uk.debian.org/debian/ unstable/main libgettextpo0 armhf 0.18.1.1-10 [123 kB]
+Get:41 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.8-base armhf 4.8.0-7 [148 kB]
+Get:42 http://ftp.uk.debian.org/debian/ unstable/main libgfortran3 armhf 4.8.0-7 [210 kB]
+Get:43 http://ftp.uk.debian.org/debian/ unstable/main x11-common all 1:7.7+3 [284 kB]
+Get:44 http://ftp.uk.debian.org/debian/ unstable/main libice6 armhf 2:1.0.8-2 [53.4 kB]
+Get:45 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8 armhf 8d-1 [121 kB]
+Get:46 http://ftp.uk.debian.org/debian/ unstable/main libthai-data all 0.1.19-2 [156 kB]
+Get:47 http://ftp.uk.debian.org/debian/ unstable/main libthai0 armhf 0.1.19-2 [40.5 kB]
+Get:48 http://ftp.uk.debian.org/debian/ unstable/main libxft2 armhf 2.3.1-1 [53.3 kB]
+Get:49 http://ftp.uk.debian.org/debian/ unstable/main fontconfig armhf 2.9.0-7.1 [349 kB]
+Get:50 http://ftp.uk.debian.org/debian/ unstable/main libpango1.0-0 armhf 1.30.0-1 [398 kB]
+Get:51 http://ftp.uk.debian.org/debian/ unstable/main libpaper1 armhf 1.1.24+nmu2 [20.8 kB]
+Get:52 http://ftp.uk.debian.org/debian/ unstable/main libpcrecpp0 armhf 1:8.31-2 [125 kB]
+Get:53 http://ftp.uk.debian.org/debian/ unstable/main libsm6 armhf 2:1.2.1-2 [31.2 kB]
+Get:54 http://ftp.uk.debian.org/debian/ unstable/main libjbig0 armhf 2.0-2 [29.2 kB]
+Get:55 http://ftp.uk.debian.org/debian/ unstable/main libtiff5 armhf 4.0.2-6 [215 kB]
+Get:56 http://ftp.uk.debian.org/debian/ unstable/main libxss1 armhf 1:1.2.2-1 [16.3 kB]
+Get:57 http://ftp.uk.debian.org/debian/ unstable/main libxt6 armhf 1:1.1.3-1 [170 kB]
+Get:58 http://ftp.uk.debian.org/debian/ unstable/main libmpc3 armhf 1.0.1-1 [35.6 kB]
+Get:59 http://ftp.uk.debian.org/debian/ unstable/main file armhf 1:5.14-1 [53.8 kB]
+Get:60 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armhf 0.18.1.1-10 [129 kB]
+Get:61 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.121 [80.5 kB]
+Get:62 http://ftp.uk.debian.org/debian/ unstable/main libstdc++6-4.6-dev armhf 4.6.4-2 [1672 kB]
+Get:63 http://ftp.uk.debian.org/debian/ unstable/main g++-4.6 armhf 4.6.4-2 [4888 kB]
+Get:64 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6 armhf 4.6.4-2 [4225 kB]
+Get:65 http://ftp.uk.debian.org/debian/ unstable/main cpp-4.6 armhf 4.6.4-2 [3993 kB]
+Get:66 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6-base armhf 4.6.4-2 [143 kB]
+Get:67 http://ftp.uk.debian.org/debian/ unstable/main html2text armhf 1.3.2a-15+b1 [94.6 kB]
+Get:68 http://ftp.uk.debian.org/debian/ unstable/main libasprintf-dev armhf 0.18.1.1-10 [27.1 kB]
+Get:69 http://ftp.uk.debian.org/debian/ unstable/main libgettextpo-dev armhf 0.18.1.1-10 [143 kB]
+Get:70 http://ftp.uk.debian.org/debian/ unstable/main gettext armhf 0.18.1.1-10 [1706 kB]
+Get:71 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:72 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:73 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 9.20130516 [708 kB]
+Get:74 http://ftp.uk.debian.org/debian/ unstable/main gfortran-4.6 armhf 4.6.4-2 [4539 kB]
+Get:75 http://ftp.uk.debian.org/debian/ unstable/main gfortran armhf 4:4.6.3-8 [1128 B]
+Get:76 http://ftp.uk.debian.org/debian/ unstable/main libblas3 armhf 1.2.20110419-5 [191 kB]
+Get:77 http://ftp.uk.debian.org/debian/ unstable/main libblas-dev armhf 1.2.20110419-5 [195 kB]
+Get:78 http://ftp.uk.debian.org/debian/ unstable/main libbz2-dev armhf 1.0.6-4 [32.7 kB]
+Get:79 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8-dev armhf 8d-1 [226 kB]
+Get:80 http://ftp.uk.debian.org/debian/ unstable/main liblapack3 armhf 3.4.2+dfsg-1 [3390 kB]
+Get:81 http://ftp.uk.debian.org/debian/ unstable/main liblapack-dev armhf 3.4.2+dfsg-1 [3661 kB]
+Get:82 http://ftp.uk.debian.org/debian/ unstable/main libtinfo-dev armhf 5.9+20130504-1 [86.6 kB]
+Get:83 http://ftp.uk.debian.org/debian/ unstable/main libncurses5-dev armhf 5.9+20130504-1 [194 kB]
+Get:84 http://ftp.uk.debian.org/debian/ unstable/main libpaper-utils armhf 1.1.24+nmu2 [17.8 kB]
+Get:85 http://ftp.uk.debian.org/debian/ unstable/main libpcre3-dev armhf 1:8.31-2 [348 kB]
+Get:86 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armhf 1:1.2.8.dfsg-1 [209 kB]
+Get:87 http://ftp.uk.debian.org/debian/ unstable/main libpng12-dev armhf 1.2.49-4 [256 kB]
+Get:88 http://ftp.uk.debian.org/debian/ unstable/main libreadline6-dev armhf 6.2+dfsg-0.1 [158 kB]
+Get:89 http://ftp.uk.debian.org/debian/ unstable/main libreadline-dev armhf 6.2+dfsg-0.1 [896 B]
+Get:90 http://ftp.uk.debian.org/debian/ unstable/main zip armhf 3.0-7 [319 kB]
+Get:91 http://ftp.uk.debian.org/debian/ unstable/main unzip armhf 6.0-9 [186 kB]
+Get:92 http://ftp.uk.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:93 http://ftp.uk.debian.org/debian/ unstable/main tcl8.5 armhf 8.5.11-2 [1538 kB]
+Get:94 http://ftp.uk.debian.org/debian/ unstable/main tk8.5 armhf 8.5.11-2 [1084 kB]
+Get:95 http://ftp.uk.debian.org/debian/ unstable/main r-base-core armhf 3.0.1-1 [21.2 MB]
+Get:96 http://ftp.uk.debian.org/debian/ unstable/main r-base-dev all 3.0.1-1 [3896 B]
+Get:97 http://ftp.uk.debian.org/debian/ unstable/main r-bioc-limma armhf 3.16.3~dfsg-1 [1613 kB]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 78.0 MB in 56s (1392 kB/s)
+(Reading database ... 10845 files and directories currently installed.)
+Preparing to replace libc6-dev:armhf 2.13-38 (using .../libc6-dev_2.17-3_armhf.deb) ...
+Unpacking replacement libc6-dev:armhf ...
+Preparing to replace libc-dev-bin 2.13-38 (using .../libc-dev-bin_2.17-3_armhf.deb) ...
+Unpacking replacement libc-dev-bin ...
+Preparing to replace libc6:armhf 2.13-38 (using .../libc6_2.17-3_armhf.deb) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Unpacking replacement libc6:armhf ...
+Setting up libc6:armhf (2.17-3) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Nothing to restart.
+(Reading database ... 10868 files and directories currently installed.)
+Preparing to replace libtinfo5:armhf 5.9-10 (using .../libtinfo5_5.9+20130504-1_armhf.deb) ...
+Unpacking replacement libtinfo5:armhf ...
+Setting up libtinfo5:armhf (5.9+20130504-1) ...
+(Reading database ... 10868 files and directories currently installed.)
+Preparing to replace libncurses5:armhf 5.9-10 (using .../libncurses5_5.9+20130504-1_armhf.deb) ...
+Unpacking replacement libncurses5:armhf ...
+Setting up libncurses5:armhf (5.9+20130504-1) ...
+(Reading database ... 10868 files and directories currently installed.)
+Preparing to replace ncurses-bin 5.9-10 (using .../ncurses-bin_5.9+20130504-1_armhf.deb) ...
+Unpacking replacement ncurses-bin ...
+Setting up ncurses-bin (5.9+20130504-1) ...
+(Reading database ... 10866 files and directories currently installed.)
+Preparing to replace zlib1g:armhf 1:1.2.7.dfsg-13 (using .../zlib1g_1%3a1.2.8.dfsg-1_armhf.deb) ...
+Unpacking replacement zlib1g:armhf ...
+Setting up zlib1g:armhf (1:1.2.8.dfsg-1) ...
+Selecting previously unselected package libpipeline1:armhf.
+(Reading database ... 10866 files and directories currently installed.)
+Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.3-1_armhf.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.22.2-2_armhf.deb) ...
+Selecting previously unselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_armhf.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.3-6_armhf.deb) ...
+Selecting previously unselected package libasprintf0c2:armhf.
+Unpacking libasprintf0c2:armhf (from .../libasprintf0c2_0.18.1.1-10_armhf.deb) ...
+Selecting previously unselected package libmagic1:armhf.
+Unpacking libmagic1:armhf (from .../libmagic1_1%3a5.14-1_armhf.deb) ...
+Selecting previously unselected package libpcre3:armhf.
+Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.31-2_armhf.deb) ...
+Selecting previously unselected package libxml2:armhf.
+Unpacking libxml2:armhf (from .../libxml2_2.8.0+dfsg1-7+nmu1_armhf.deb) ...
+Selecting previously unselected package libexpat1:armhf.
+Unpacking libexpat1:armhf (from .../libexpat1_2.1.0-3_armhf.deb) ...
+Selecting previously unselected package libfreetype6:armhf.
+Unpacking libfreetype6:armhf (from .../libfreetype6_2.4.9-1.1_armhf.deb) ...
+Selecting previously unselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ...
+Moving old data out of the way
+Selecting previously unselected package fonts-dejavu-core.
+Unpacking fonts-dejavu-core (from .../fonts-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ...
+Selecting previously unselected package libfontconfig1:armhf.
+Unpacking libfontconfig1:armhf (from .../libfontconfig1_2.9.0-7.1_armhf.deb) ...
+Selecting previously unselected package libpixman-1-0:armhf.
+Unpacking libpixman-1-0:armhf (from .../libpixman-1-0_0.26.0-4_armhf.deb) ...
+Selecting previously unselected package libpng12-0:armhf.
+Unpacking libpng12-0:armhf (from .../libpng12-0_1.2.49-4_armhf.deb) ...
+Selecting previously unselected package libxau6:armhf.
+Unpacking libxau6:armhf (from .../libxau6_1%3a1.0.7-1_armhf.deb) ...
+Selecting previously unselected package libxdmcp6:armhf.
+Unpacking libxdmcp6:armhf (from .../libxdmcp6_1%3a1.1.1-1_armhf.deb) ...
+Selecting previously unselected package libxcb1:armhf.
+Unpacking libxcb1:armhf (from .../libxcb1_1.8.1-2_armhf.deb) ...
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ...
+Selecting previously unselected package libx11-6:armhf.
+Unpacking libx11-6:armhf (from .../libx11-6_2%3a1.5.0-1_armhf.deb) ...
+Selecting previously unselected package libxcb-render0:armhf.
+Unpacking libxcb-render0:armhf (from .../libxcb-render0_1.8.1-2_armhf.deb) ...
+Selecting previously unselected package libxcb-shm0:armhf.
+Unpacking libxcb-shm0:armhf (from .../libxcb-shm0_1.8.1-2_armhf.deb) ...
+Selecting previously unselected package libxext6:armhf.
+Unpacking libxext6:armhf (from .../libxext6_2%3a1.3.1-2_armhf.deb) ...
+Selecting previously unselected package libxrender1:armhf.
+Unpacking libxrender1:armhf (from .../libxrender1_1%3a0.9.7-1_armhf.deb) ...
+Selecting previously unselected package libcairo2:armhf.
+Unpacking libcairo2:armhf (from .../libcairo2_1.12.14-4_armhf.deb) ...
+Selecting previously unselected package libffi6:armhf.
+Unpacking libffi6:armhf (from .../libffi6_3.0.13-4_armhf.deb) ...
+Selecting previously unselected package libglib2.0-0:armhf.
+Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.36.1-2build1_armhf.deb) ...
+Selecting previously unselected package libcroco3:armhf.
+Unpacking libcroco3:armhf (from .../libcroco3_0.6.8-2_armhf.deb) ...
+Selecting previously unselected package libdatrie1:armhf.
+Unpacking libdatrie1:armhf (from .../libdatrie1_0.2.6-2_armhf.deb) ...
+Selecting previously unselected package libunistring0:armhf.
+Unpacking libunistring0:armhf (from .../libunistring0_0.9.3-5+b1_armhf.deb) ...
+Selecting previously unselected package libgettextpo0:armhf.
+Unpacking libgettextpo0:armhf (from .../libgettextpo0_0.18.1.1-10_armhf.deb) ...
+Selecting previously unselected package gcc-4.8-base:armhf.
+Unpacking gcc-4.8-base:armhf (from .../gcc-4.8-base_4.8.0-7_armhf.deb) ...
+Selecting previously unselected package libgfortran3:armhf.
+Unpacking libgfortran3:armhf (from .../libgfortran3_4.8.0-7_armhf.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.7+3_all.deb) ...
+Selecting previously unselected package libice6:armhf.
+Unpacking libice6:armhf (from .../libice6_2%3a1.0.8-2_armhf.deb) ...
+Selecting previously unselected package libjpeg8:armhf.
+Unpacking libjpeg8:armhf (from .../libjpeg8_8d-1_armhf.deb) ...
+Selecting previously unselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.19-2_all.deb) ...
+Selecting previously unselected package libthai0:armhf.
+Unpacking libthai0:armhf (from .../libthai0_0.1.19-2_armhf.deb) ...
+Selecting previously unselected package libxft2:armhf.
+Unpacking libxft2:armhf (from .../libxft2_2.3.1-1_armhf.deb) ...
+Selecting previously unselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_armhf.deb) ...
+Selecting previously unselected package libpango1.0-0:armhf.
+Unpacking libpango1.0-0:armhf (from .../libpango1.0-0_1.30.0-1_armhf.deb) ...
+Selecting previously unselected package libpaper1:armhf.
+Unpacking libpaper1:armhf (from .../libpaper1_1.1.24+nmu2_armhf.deb) ...
+Selecting previously unselected package libpcrecpp0:armhf.
+Unpacking libpcrecpp0:armhf (from .../libpcrecpp0_1%3a8.31-2_armhf.deb) ...
+Selecting previously unselected package libsm6:armhf.
+Unpacking libsm6:armhf (from .../libsm6_2%3a1.2.1-2_armhf.deb) ...
+Selecting previously unselected package libjbig0:armhf.
+Unpacking libjbig0:armhf (from .../libjbig0_2.0-2_armhf.deb) ...
+Selecting previously unselected package libtiff5:armhf.
+Unpacking libtiff5:armhf (from .../libtiff5_4.0.2-6_armhf.deb) ...
+Selecting previously unselected package libxss1:armhf.
+Unpacking libxss1:armhf (from .../libxss1_1%3a1.2.2-1_armhf.deb) ...
+Selecting previously unselected package libxt6:armhf.
+Unpacking libxt6:armhf (from .../libxt6_1%3a1.1.3-1_armhf.deb) ...
+Selecting previously unselected package libmpc3:armhf.
+Unpacking libmpc3:armhf (from .../libmpc3_1.0.1-1_armhf.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_1%3a5.14-1_armhf.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_armhf.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
+Preparing to replace libstdc++6-4.6-dev 4.6.3-15 (using .../libstdc++6-4.6-dev_4.6.4-2_armhf.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.3-15 (using .../g++-4.6_4.6.4-2_armhf.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.3-15 (using .../gcc-4.6_4.6.4-2_armhf.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace cpp-4.6 4.6.3-15 (using .../cpp-4.6_4.6.4-2_armhf.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace gcc-4.6-base:armhf 4.6.3-15 (using .../gcc-4.6-base_4.6.4-2_armhf.deb) ...
+Unpacking replacement gcc-4.6-base:armhf ...
+Selecting previously unselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15+b1_armhf.deb) ...
+Selecting previously unselected package libasprintf-dev:armhf.
+Unpacking libasprintf-dev:armhf (from .../libasprintf-dev_0.18.1.1-10_armhf.deb) ...
+Selecting previously unselected package libgettextpo-dev:armhf.
+Unpacking libgettextpo-dev:armhf (from .../libgettextpo-dev_0.18.1.1-10_armhf.deb) ...
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-10_armhf.deb) ...
+Selecting previously unselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously unselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_9.20130516_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.4-2_armhf.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.3-8_armhf.deb) ...
+Selecting previously unselected package libblas3.
+Unpacking libblas3 (from .../libblas3_1.2.20110419-5_armhf.deb) ...
+Selecting previously unselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_armhf.deb) ...
+Selecting previously unselected package libbz2-dev:armhf.
+Unpacking libbz2-dev:armhf (from .../libbz2-dev_1.0.6-4_armhf.deb) ...
+Selecting previously unselected package libjpeg8-dev:armhf.
+Unpacking libjpeg8-dev:armhf (from .../libjpeg8-dev_8d-1_armhf.deb) ...
+Selecting previously unselected package liblapack3.
+Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_armhf.deb) ...
+Selecting previously unselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.4.2+dfsg-1_armhf.deb) ...
+Selecting previously unselected package libtinfo-dev:armhf.
+Unpacking libtinfo-dev:armhf (from .../libtinfo-dev_5.9+20130504-1_armhf.deb) ...
+Selecting previously unselected package libncurses5-dev:armhf.
+Unpacking libncurses5-dev:armhf (from .../libncurses5-dev_5.9+20130504-1_armhf.deb) ...
+Selecting previously unselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_armhf.deb) ...
+Selecting previously unselected package libpcre3-dev:armhf.
+Unpacking libpcre3-dev:armhf (from .../libpcre3-dev_1%3a8.31-2_armhf.deb) ...
+Selecting previously unselected package zlib1g-dev:armhf.
+Unpacking zlib1g-dev:armhf (from .../zlib1g-dev_1%3a1.2.8.dfsg-1_armhf.deb) ...
+Selecting previously unselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_armhf.deb) ...
+Selecting previously unselected package libreadline6-dev:armhf.
+Unpacking libreadline6-dev:armhf (from .../libreadline6-dev_6.2+dfsg-0.1_armhf.deb) ...
+Selecting previously unselected package libreadline-dev:armhf.
+Unpacking libreadline-dev:armhf (from .../libreadline-dev_6.2+dfsg-0.1_armhf.deb) ...
+Selecting previously unselected package zip.
+Unpacking zip (from .../archives/zip_3.0-7_armhf.deb) ...
+Selecting previously unselected package unzip.
+Unpacking unzip (from .../archives/unzip_6.0-9_armhf.deb) ...
+Selecting previously unselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
+Selecting previously unselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_armhf.deb) ...
+Selecting previously unselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_armhf.deb) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_3.0.1-1_armhf.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_3.0.1-1_all.deb) ...
+Selecting previously unselected package r-bioc-limma.
+Unpacking r-bioc-limma (from .../r-bioc-limma_3.16.3~dfsg-1_armhf.deb) ...
+Setting up libc-dev-bin (2.17-3) ...
+Setting up libc6-dev:armhf (2.17-3) ...
+Setting up libpipeline1:armhf (1.2.3-1) ...
+Setting up groff-base (1.22.2-2) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.3-6) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:armhf (0.18.1.1-10) ...
+Setting up libmagic1:armhf (1:5.14-1) ...
+Setting up libpcre3:armhf (1:8.31-2) ...
+Setting up libxml2:armhf (2.8.0+dfsg1-7+nmu1) ...
+Setting up libexpat1:armhf (2.1.0-3) ...
+Setting up libfreetype6:armhf (2.4.9-1.1) ...
+Setting up ucf (3.0025+nmu3) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:armhf (2.9.0-7.1) ...
+Setting up libpixman-1-0:armhf (0.26.0-4) ...
+Setting up libpng12-0:armhf (1.2.49-4) ...
+Setting up libxau6:armhf (1:1.0.7-1) ...
+Setting up libxdmcp6:armhf (1:1.1.1-1) ...
+Setting up libxcb1:armhf (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:armhf (2:1.5.0-1) ...
+Setting up libxcb-render0:armhf (1.8.1-2) ...
+Setting up libxcb-shm0:armhf (1.8.1-2) ...
+Setting up libxext6:armhf (2:1.3.1-2) ...
+Setting up libxrender1:armhf (1:0.9.7-1) ...
+Setting up libcairo2:armhf (1.12.14-4) ...
+Setting up libffi6:armhf (3.0.13-4) ...
+Setting up libglib2.0-0:armhf (2.36.1-2build1) ...
+No schema files found: doing nothing.
+Setting up libcroco3:armhf (0.6.8-2) ...
+Setting up libdatrie1:armhf (0.2.6-2) ...
+Setting up libunistring0:armhf (0.9.3-5+b1) ...
+Setting up libgettextpo0:armhf (0.18.1.1-10) ...
+Setting up gcc-4.8-base:armhf (4.8.0-7) ...
+Setting up libgfortran3:armhf (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6:armhf (2:1.0.8-2) ...
+Setting up libjpeg8:armhf (8d-1) ...
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:armhf (0.1.19-2) ...
+Setting up libxft2:armhf (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
+Regenerating fonts cache... done.
+Setting up libpango1.0-0:armhf (1.30.0-1) ...
+Setting up libpaper1:armhf (1.1.24+nmu2) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpcrecpp0:armhf (1:8.31-2) ...
+Setting up libsm6:armhf (2:1.2.1-2) ...
+Setting up libjbig0:armhf (2.0-2) ...
+Setting up libtiff5:armhf (4.0.2-6) ...
+Setting up libxss1:armhf (1:1.2.2-1) ...
+Setting up libxt6:armhf (1:1.1.3-1) ...
+Setting up libmpc3:armhf (1.0.1-1) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
+Setting up gcc-4.6-base:armhf (4.6.4-2) ...
+Setting up cpp-4.6 (4.6.4-2) ...
+Setting up gcc-4.6 (4.6.4-2) ...
+Setting up html2text (1.3.2a-15+b1) ...
+Setting up libasprintf-dev:armhf (0.18.1.1-10) ...
+Setting up libgettextpo-dev:armhf (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20130516) ...
+Setting up gfortran-4.6 (4.6.4-2) ...
+Setting up gfortran (4:4.6.3-8) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:armhf (1.0.6-4) ...
+Setting up libjpeg8-dev:armhf (8d-1) ...
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:armhf (5.9+20130504-1) ...
+Setting up libncurses5-dev:armhf (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:armhf (1:8.31-2) ...
+Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:armhf (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:armhf (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.1-1) ...
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (3.0.1-1) ...
+Setting up r-bioc-limma (3.16.3~dfsg-1) ...
+Setting up g++-4.6 (4.6.4-2) ...
+Setting up libstdc++6-4.6-dev (4.6.4-2) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 27 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 3.2.0-4-mx5 armhf (armv7l)
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.6_4.6.4-2 gcc-4.6_4.6.4-2 libc6-dev_2.17-3 libstdc++6_4.7.2-5 libstdc++6-4.6-dev_4.6.4-2 linux-libc-dev_3.2.41-2
+Package versions: apt_0.9.7.8 base-files_7.1 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.20-3 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2 dash_0.5.7-3 debconf_1.5.49 debconf-i18n_1.5.49 debfoster_2.7-1.2 debhelper_9.20130516 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-1 find [...]
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Fri May 17 13:25:10 2013 UTC using DSA key ID C09FD35A
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-edger_3.2.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-edger in r-bioc-edger-3.2.3~dfsg
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg-1.debian.tar.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: source package r-bioc-edger
+dpkg-buildpackage: source version 3.2.3~dfsg-1
+ dpkg-source --before-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: host architecture armhf
+ fakeroot debian/rules clean
+test -x debian/rules
+dh_testroot
+dh_clean
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build-arch
+test -x debian/rules
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+ fakeroot debian/rules binary-arch
+test -x debian/rules
+dh_testroot
+dh_prep
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+dh_installdirs -A
+ install -d debian/r-bioc-edger
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-edger/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 3.0.1-1)" >> debian/r-bioc-edger.substvars
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-armhf-l48Ry_/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-armhf-l48Ry_/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'edgeR' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-armhf-l48Ry_/r-bioc-edger-3.2.3~dfsg/src'
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_exact_test_by_deviance.cpp -o R_exact_test_by_deviance.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_loess_by_col.cpp -o R_loess_by_col.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_cr_adjust.cpp -o R_cr_adjust.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_levenberg.cpp -o R_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_maximize_interpolant.cpp -o R_maximize_interpolant.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_one_group.cpp -o R_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_simple_good_turing.cpp -o R_simple_good_turing.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c core/adj_coxreid.cpp -o core/adj_coxreid.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c core/glm_levenberg.cpp -o core/glm_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c core/glm_one_group.cpp -o core/glm_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c core/interpolator.cpp -o core/interpolator.o
+gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c core/fmm_spline.c -o core/fmm_spline.o
+g++ -shared -o edgeR.so R_exact_test_by_deviance.o R_loess_by_col.o R_cr_adjust.o R_levenberg.o R_maximize_interpolant.o R_one_group.o R_simple_good_turing.o core/adj_coxreid.o core/glm_levenberg.o core/glm_one_group.o core/interpolator.o core/fmm_spline.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-armhf-l48Ry_/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-armhf-l48Ry_/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-armhf-l48Ry_/r-bioc-edger-3.2.3~dfsg/src'
+installing to /build/buildd-r-bioc-edger_3.2.3~dfsg-1-armhf-l48Ry_/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs
+** R
+** data
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices
+** installing vignettes
+** testing if installed package can be loaded
+* DONE (edgeR)
+rm -vf /build/buildd-r-bioc-edger_3.2.3~dfsg-1-armhf-l48Ry_/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-armhf-l48Ry_/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/COPYING \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-armhf-l48Ry_/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-edger_3.2.3~dfsg-1-armhf-l48Ry_/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-armhf-l48Ry_/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides/r-bioc-edger; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-edger.substvars
+dh_installdirs -pr-bioc-edger
+chmod 644 debian/r-bioc-edger/usr/lib/R/site-library/edgeR/doc/*
+dh_installdocs -pr-bioc-edger
+ install -g 0 -o 0 -d debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-edger_3.2.3~dfsg-1-armhf-l48Ry_/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/doc/r-bioc-edger \;
+ cp -a debian/README.test debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ chown -R 0:0 debian/r-bioc-edger/usr/share/doc
+ chmod -R go=rX debian/r-bioc-edger/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-edger/usr/share/doc
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-edger/usr/share/doc/r-bioc-edger/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-edger/usr/share/doc/r-bioc-edger/copyright
+dh_installexamples -pr-bioc-edger
+dh_installman -pr-bioc-edger
+dh_installinfo -pr-bioc-edger
+dh_installmenu -pr-bioc-edger
+dh_installcron -pr-bioc-edger
+dh_installinit -pr-bioc-edger
+dh_installdebconf -pr-bioc-edger
+ install -o 0 -g 0 -d debian/r-bioc-edger/DEBIAN
+dh_installemacsen -pr-bioc-edger
+dh_installcatalogs -pr-bioc-edger
+ grep -s -v '^misc:Depends=' debian/r-bioc-edger.substvars > debian/r-bioc-edger.substvars.new || true
+ mv debian/r-bioc-edger.substvars.new debian/r-bioc-edger.substvars
+dh_installpam -pr-bioc-edger
+dh_installlogrotate -pr-bioc-edger
+dh_installlogcheck -pr-bioc-edger
+dh_installchangelogs -pr-bioc-edger
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-edger/usr/share/doc/r-bioc-edger/changelog.Debian
+dh_installudev -pr-bioc-edger
+dh_lintian -pr-bioc-edger
+dh_bugfiles -pr-bioc-edger
+dh_install -pr-bioc-edger
+dh_link -pr-bioc-edger
+dh_installmime -pr-bioc-edger
+dh_installgsettings -pr-bioc-edger
+dh_strip -pr-bioc-edger
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dh_compress -pr-bioc-edger
+ cd debian/r-bioc-edger
+ chmod a-x usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save usr/share/doc/r-bioc-edger/changelog.Debian
+ gzip -9nf usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save usr/share/doc/r-bioc-edger/changelog.Debian
+ cd '/build/buildd-r-bioc-edger_3.2.3~dfsg-1-armhf-l48Ry_/r-bioc-edger-3.2.3~dfsg'
+dh_fixperms -pr-bioc-edger
+ find debian/r-bioc-edger -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-edger ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-edger/usr/share/doc -type f ! -regex 'debian/r-bioc-edger/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-edger/usr/share/man debian/r-bioc-edger/usr/man/ debian/r-bioc-edger/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/lib/perl5 debian/r-bioc-edger/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-edger/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
+dh_makeshlibs -pr-bioc-edger
+ rm -f debian/r-bioc-edger/DEBIAN/shlibs
+dh_installdeb -pr-bioc-edger
+dh_perl -pr-bioc-edger
+dh_shlibdeps -pr-bioc-edger
+ dpkg-shlibdeps -Tdebian/r-bioc-edger.substvars debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so was not linked against libgfortran.so.3 (it uses none of the library's symbols)
+dh_gencontrol -pr-bioc-edger
+ echo misc:Depends= >> debian/r-bioc-edger.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-edger.substvars -Pdebian/r-bioc-edger
+ chmod 644 debian/r-bioc-edger/DEBIAN/control
+ chown 0:0 debian/r-bioc-edger/DEBIAN/control
+dh_md5sums -pr-bioc-edger
+ (cd debian/r-bioc-edger >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-edger/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-edger/DEBIAN/md5sums
+dh_builddeb -pr-bioc-edger -- -Z xz
+ dpkg-deb -Z xz --build debian/r-bioc-edger ..
+dpkg-deb: building package `r-bioc-edger' in `../r-bioc-edger_3.2.3~dfsg-1_armhf.deb'.
+ dpkg-genchanges -B -marmhf Build Daemon (howells) <buildd_armhf-howells at buildd.debian.org> >../r-bioc-edger_3.2.3~dfsg-1_armhf.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20130517-1516
+
+r-bioc-edger_3.2.3~dfsg-1_armhf.changes:
+Format: 1.8
+Date: Fri, 17 May 2013 14:36:51 +0200
+Source: r-bioc-edger
+Binary: r-bioc-edger
+Architecture: armhf
+Version: 3.2.3~dfsg-1
+Distribution: sid
+Urgency: low
+Maintainer: armhf Build Daemon (howells) <buildd_armhf-howells at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
+Description:
+ r-bioc-edger - Empirical analysis of digital gene expression data in R
+Changes:
+ r-bioc-edger (3.2.3~dfsg-1) unstable; urgency=low
+ .
+ [ Charles Plessy ]
+ 74f1a5f Imported Upstream version 2.6.10~dfsg
+ d2d70ab Corrected VCS URLs.
+ 44c9d4e Regression tests for autopkgtest.
+ .
+ [ Andreas Tille ]
+ * Imported new upstream version 3.2.3~dfsg
+ * debian/control
+ - Added myself as Uploader
+ - Add ${shlibs:Depends} to ensure dependency from libc
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - normalised format
+ - Removed unneeded Pre-Depends: dpkg (>= 1.15.6)
+ - Removed versioned dependency of r-base-dev
+ - Package is "Architecture: any" (rather than all)
+ * debian/source/format: Add explicit source format specification
+ * debian/copyright:
+ - Update Source location
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - Add years to Copyright field
+ * debian/upstream: inst/CITATION asks for citing this more recent
+ paper that is now on top of debian/upstream
+ * debian/rules: remove executable flag from installed documentation
+Checksums-Sha1:
+ b336443364178d7a9859ce0922ae4f62c8c2e113 1362854 r-bioc-edger_3.2.3~dfsg-1_armhf.deb
+Checksums-Sha256:
+ d2a4d515065d77851ee8525595f9022cd9efb31de1c056eeee599bf34be749e9 1362854 r-bioc-edger_3.2.3~dfsg-1_armhf.deb
+Files:
+ 0d06bafca9ef223e0c48cd3b9dcb5715 1362854 gnu-r optional r-bioc-edger_3.2.3~dfsg-1_armhf.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-edger_3.2.3~dfsg-1_armhf.deb
+───────────────────────────────────
+
+ new debian package, version 2.0.
+ size 1362854 bytes: control archive=1865 bytes.
+ 957 bytes, 17 lines control
+ 2932 bytes, 38 lines md5sums
+ Package: r-bioc-edger
+ Version: 3.2.3~dfsg-1
+ Architecture: armhf
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 2464
+ Depends: r-base-core (>= 3.0.1-1), r-bioc-limma, libblas3 | libblas.so.3 | libatlas3-base, libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libgfortran3 (>= 4.3), liblapack3 | liblapack.so.3 | libatlas3-base, libstdc++6 (>= 4.4.0)
+ Suggests: r-cran-mass
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
+ Description: Empirical analysis of digital gene expression data in R
+ Bioconductor package for differential expression analysis of whole
+ transcriptome sequencing (RNA-seq) and digital gene expression
+ profiles with biological replication. It uses empirical Bayes
+ estimation and exact tests based on the negative binomial
+ distribution. It is also useful for differential signal analysis with
+ other types of genome-scale count data.
+
+drwxr-xr-x root/root 0 2013-05-17 15:15 ./
+drwxr-xr-x root/root 0 2013-05-17 15:15 ./usr/
+drwxr-xr-x root/root 0 2013-05-17 15:14 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-17 15:14 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-17 15:15 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-17 15:15 ./usr/lib/R/site-library/edgeR/
+drwxr-xr-x root/root 0 2013-05-17 15:15 ./usr/lib/R/site-library/edgeR/Meta/
+-rw-r--r-- root/root 228 2013-05-17 15:15 ./usr/lib/R/site-library/edgeR/Meta/vignette.rds
+-rw-r--r-- root/root 161 2013-05-17 15:15 ./usr/lib/R/site-library/edgeR/Meta/data.rds
+-rw-r--r-- root/root 368 2013-05-17 15:15 ./usr/lib/R/site-library/edgeR/Meta/nsInfo.rds
+-rw-r--r-- root/root 1640 2013-05-17 15:15 ./usr/lib/R/site-library/edgeR/Meta/links.rds
+-rw-r--r-- root/root 3639 2013-05-17 15:15 ./usr/lib/R/site-library/edgeR/Meta/Rd.rds
+-rw-r--r-- root/root 998 2013-05-17 15:14 ./usr/lib/R/site-library/edgeR/Meta/package.rds
+-rw-r--r-- root/root 3475 2013-05-17 15:15 ./usr/lib/R/site-library/edgeR/Meta/hsearch.rds
+drwxr-xr-x root/root 0 2013-05-17 15:15 ./usr/lib/R/site-library/edgeR/help/
+-rw-r--r-- root/root 230733 2013-05-17 15:14 ./usr/lib/R/site-library/edgeR/help/edgeR.rdb
+-rw-r--r-- root/root 804 2013-05-17 15:14 ./usr/lib/R/site-library/edgeR/help/paths.rds
+-rw-r--r-- root/root 3776 2013-05-17 15:15 ./usr/lib/R/site-library/edgeR/help/AnIndex
+-rw-r--r-- root/root 1753 2013-05-17 15:14 ./usr/lib/R/site-library/edgeR/help/edgeR.rdx
+-rw-r--r-- root/root 1342 2013-05-17 15:15 ./usr/lib/R/site-library/edgeR/help/aliases.rds
+-rw-r--r-- root/root 1116 2013-05-17 15:14 ./usr/lib/R/site-library/edgeR/DESCRIPTION
+drwxr-xr-x root/root 0 2013-05-17 15:15 ./usr/lib/R/site-library/edgeR/libs/
+-rw-r--r-- root/root 30816 2013-05-17 15:15 ./usr/lib/R/site-library/edgeR/libs/edgeR.so
+-rw-r--r-- root/root 13746 2013-05-17 15:14 ./usr/lib/R/site-library/edgeR/NEWS.Rd
+drwxr-xr-x root/root 0 2013-05-17 15:15 ./usr/lib/R/site-library/edgeR/doc/
+-rw-r--r-- root/root 49354 2013-05-17 15:14 ./usr/lib/R/site-library/edgeR/doc/edgeR.pdf
+-rw-r--r-- root/root 691 2013-05-17 15:14 ./usr/lib/R/site-library/edgeR/doc/index.html
+-rw-r--r-- root/root 1826 2013-05-17 15:14 ./usr/lib/R/site-library/edgeR/doc/edgeR.Rnw
+-rw-r--r-- root/root 879697 2013-05-17 15:14 ./usr/lib/R/site-library/edgeR/doc/edgeRUsersGuide.pdf
+drwxr-xr-x root/root 0 2013-05-17 15:14 ./usr/lib/R/site-library/edgeR/data/
+-rw-r--r-- root/root 248500 2013-05-17 15:14 ./usr/lib/R/site-library/edgeR/data/NC1.txt
+-rw-r--r-- root/root 19 2013-05-17 15:14 ./usr/lib/R/site-library/edgeR/data/datalist
+-rw-r--r-- root/root 263571 2013-05-17 15:14 ./usr/lib/R/site-library/edgeR/data/Tu98.txt
+-rw-r--r-- root/root 318545 2013-05-17 15:14 ./usr/lib/R/site-library/edgeR/data/Tu102.txt
+-rw-r--r-- root/root 228426 2013-05-17 15:14 ./usr/lib/R/site-library/edgeR/data/NC2.txt
+drwxr-xr-x root/root 0 2013-05-17 15:14 ./usr/lib/R/site-library/edgeR/R/
+-rw-r--r-- root/root 116076 2013-05-17 15:14 ./usr/lib/R/site-library/edgeR/R/edgeR.rdb
+-rw-r--r-- root/root 1056 2013-05-17 15:14 ./usr/lib/R/site-library/edgeR/R/edgeR
+-rw-r--r-- root/root 2294 2013-05-17 15:14 ./usr/lib/R/site-library/edgeR/R/edgeR.rdx
+-rw-r--r-- root/root 804 2013-05-17 15:14 ./usr/lib/R/site-library/edgeR/NAMESPACE
+-rw-r--r-- root/root 6834 2013-05-17 15:15 ./usr/lib/R/site-library/edgeR/INDEX
+-rw-r--r-- root/root 2057 2013-05-17 15:14 ./usr/lib/R/site-library/edgeR/CITATION
+drwxr-xr-x root/root 0 2013-05-17 15:15 ./usr/lib/R/site-library/edgeR/html/
+-rw-r--r-- root/root 22781 2013-05-17 15:15 ./usr/lib/R/site-library/edgeR/html/00Index.html
+-rw-r--r-- root/root 1179 2013-05-17 15:15 ./usr/lib/R/site-library/edgeR/html/R.css
+drwxr-xr-x root/root 0 2013-05-17 15:15 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-17 15:15 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-17 15:15 ./usr/share/doc/r-bioc-edger/
+-rw-r--r-- root/root 816 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.test
+drwxr-xr-x root/root 0 2013-05-17 15:15 ./usr/share/doc/r-bioc-edger/tests/
+-rw-r--r-- root/root 5706 2013-04-08 00:02 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save.gz
+-rw-r--r-- root/root 1392 2013-04-03 22:17 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R.gz
+-rw-r--r-- root/root 274 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.Debian
+-rw-r--r-- root/root 1384 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/changelog.Debian.gz
+-rw-r--r-- root/root 1404 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/copyright
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-armhf-sbuild-3f34a854-e608-430d-b863-89e4a032d10e/build/buildd-r-bioc-edger_3.2.3~dfsg-1-armhf-l48Ry_
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: armhf
+Build-Space: 6844
+Build-Time: 156
+Distribution: sid
+Install-Time: 399
+Job: r-bioc-edger_3.2.3~dfsg-1
+Package: r-bioc-edger
+Package-Time: 716
+Source-Version: 3.2.3~dfsg-1
+Space: 6844
+Status: successful
+Version: 3.2.3~dfsg-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20130517-1516
+Build needed 00:11:56, 6844k disc space
+Signature with key 'E7200146' requested:
+
diff --git a/i386.log b/i386.log
new file mode 100644
index 0000000..6d1d79b
--- /dev/null
+++ b/i386.log
@@ -0,0 +1,923 @@
+From buildd at murphy.debian.org Fri May 17 14:23:24 2013
+Return-path: <buildd at murphy.debian.org>
+Received: from mailly.debian.org ([82.195.75.114])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=mailly.debian.org, EMAIL=hostmaster at mailly.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:DHE_RSA_AES_128_CBC_SHA1:16)
+ (Exim 4.72) (envelope-from <buildd at murphy.debian.org>)
+ id 1UdLZ6-0000CZ-LQ
+ for logs at buildd.debian.org; Fri, 17 May 2013 14:23:24 +0000
+Received: from murphy.debian.org ([97.107.116.31])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=murphy.debian.org, EMAIL=hostmaster at murphy.debian.org (verified)
+ by mailly.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:256)
+ (Exim 4.80) (envelope-from <buildd at murphy.debian.org>)
+ id 1UdLZ5-00039E-J1
+ for logs at buildd.debian.org; Fri, 17 May 2013 14:23:23 +0000
+Received: from buildd by murphy.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at murphy.debian.org>)
+ id 1UdLZ4-0001Yq-2r; Fri, 17 May 2013 14:23:22 +0000
+Message-Id: <E1UdLZ4-0001Yq-2r at murphy.debian.org>
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
+Date: Fri, 17 May 2013 14:23:22 +0000
+From: buildd on murphy <buildd at murphy.debian.org>
+To: logs at buildd.debian.org,buildd-admin at murphy.debian.org
+Subject: Log for successful build of r-bioc-edger_3.2.3~dfsg-1 on i386
+ (dist=sid)
+Key-Id: 76D9491D
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on murphy.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-edger 3.2.3~dfsg-1 (i386) 17 May 2013 14:22 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-edger
+Version: 3.2.3~dfsg-1
+Source Version: 3.2.3~dfsg-1
+Architecture: i386
+Get:1 http://ftp.us.debian.org sid InRelease [205 kB]
+Get:2 http://incoming.debian.org sid InRelease [205 kB]
+Hit http://ftp.us.debian.org sid/main Sources/DiffIndex
+Get:3 http://incoming.debian.org buildd-unstable InRelease [111 kB]
+Get:4 http://incoming.debian.org unstable InRelease [205 kB]
+Hit http://ftp.us.debian.org sid/contrib Sources/DiffIndex
+Hit http://ftp.us.debian.org sid/main i386 Packages/DiffIndex
+Hit http://ftp.us.debian.org sid/contrib i386 Packages/DiffIndex
+Get:5 http://incoming.debian.org sid/main i386 Packages/DiffIndex [7876 B]
+Hit http://incoming.debian.org buildd-unstable/main Sources
+Hit http://incoming.debian.org buildd-unstable/contrib Sources
+Hit http://incoming.debian.org buildd-unstable/non-free Sources
+Hit http://incoming.debian.org buildd-unstable/main i386 Packages
+Ign http://incoming.debian.org sid/main i386 2013-05-17-1417.26.pdiff
+Hit http://incoming.debian.org unstable/main Sources/DiffIndex
+Hit http://incoming.debian.org unstable/contrib Sources/DiffIndex
+Hit http://incoming.debian.org sid/main i386
+Fetched 733 kB in 4s (156 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-edger' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/debian-med/r-bioc-edger.git
+Need to get 1218 kB of source archives.
+Get:1 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-bioc-edger 3.2.3~dfsg-1 (dsc) [1445 B]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-bioc-edger 3.2.3~dfsg-1 (tar) [1212 kB]
+Get:3 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-bioc-edger 3.2.3~dfsg-1 (diff) [4311 B]
+Fetched 1218 kB in 3s (332 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.6)
+fakeroot: already installed (1.18.4-2)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages were automatically installed and are no longer required:
+ libexpat1 libexpat1-dev libffi5 libmpc2 libncursesw5 libreadline5 libruby1.8
+ libruby1.9.1 libsqlite3-0 libssl-dev libssl1.0.0 libyaml-0-2 mime-support
+ ruby ruby1.8 ruby1.8-dev ruby1.9.1 ruby1.9.1-dev rubygems zlib1g-dev
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 18 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages were automatically installed and are no longer required:
+ libexpat1 libexpat1-dev libffi5 libmpc2 libncursesw5 libreadline5 libruby1.8
+ libruby1.9.1 libsqlite3-0 libssl-dev libssl1.0.0 libyaml-0-2 mime-support
+ ruby ruby1.8 ruby1.8-dev ruby1.9.1 ruby1.9.1-dev rubygems zlib1g-dev
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 18 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-edger build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev, r-bioc-limma
+Checking for already installed dependencies...
+base-files: already installed (7.2)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2+dfsg-1)
+bsdutils: already installed (1:2.20.1-5.3)
+coreutils: already installed (8.13-3.3)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1.1)
+findutils: already installed (4.4.2-5)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+libc-bin: already installed (2.17-1)
+login: already installed (1:4.1.5.1-1)
+mount: already installed (2.20.1-5.3)
+ncurses-base: already installed (5.9-10)
+ncurses-bin: already installed (5.9+20130504-1)
+perl-base: already installed (5.14.2-21)
+sed: already installed (4.2.2-1)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-5)
+util-linux: already installed (2.20.1-5.3)
+libc6-dev: already installed (2.17-3)
+gcc: already installed (4:4.7.2-1 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.7.2-1 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
+debhelper: already installed (9.20130509 >= 9 is satisfied)
+cdbs: missing
+r-base-dev: missing
+r-bioc-limma: missing
+Checking for dependency conflicts...
+Installing positive dependencies: cdbs r-base-dev r-bioc-limma
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages were automatically installed and are no longer required:
+ libexpat1-dev libffi5 libmpc2 libncursesw5 libreadline5 libruby1.8
+ libruby1.9.1 libsqlite3-0 libssl-dev libssl1.0.0 libyaml-0-2 mime-support
+ ruby ruby1.8 ruby1.8-dev ruby1.9.1 ruby1.9.1-dev rubygems
+Use 'apt-get autoremove' to remove them.
+The following extra packages will be installed:
+ fontconfig fontconfig-config fonts-dejavu-core gfortran gfortran-4.7
+ libblas-dev libblas3 libcairo2 libdatrie1 libfontconfig1 libfreetype6
+ libgfortran-4.7-dev libgfortran3 libice6 libjbig0 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3 libncurses5-dev libpango1.0-0 libpaper-utils
+ libpaper1 libpcre3-dev libpcrecpp0 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff5
+ libtinfo-dev libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1
+ libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6 r-base-core tcl8.5
+ tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+Suggested packages:
+ devscripts gfortran-multilib gfortran-doc gfortran-4.7-multilib
+ gfortran-4.7-doc libgfortran3-dbg ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp ess r-doc-info r-doc-pdf r-mathlib r-base-html
+ texlive-base texlive-latex-base texlive-generic-recommended
+ texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
+ texlive-latex-recommended texlive-latex-extra texinfo texi2html
+ tcl-tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev r-recommended r-doc-html xterm x-terminal-emulator
+ libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
+ x11-xserver-utils
+The following NEW packages will be installed:
+ cdbs fontconfig fontconfig-config fonts-dejavu-core gfortran gfortran-4.7
+ libblas-dev libblas3 libcairo2 libdatrie1 libfontconfig1 libfreetype6
+ libgfortran-4.7-dev libgfortran3 libice6 libjbig0 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3 libncurses5-dev libpango1.0-0 libpaper-utils
+ libpaper1 libpcre3-dev libpcrecpp0 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff5
+ libtinfo-dev libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1
+ libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6 r-base-core r-base-dev
+ r-bioc-limma tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+0 upgraded, 59 newly installed, 0 to remove and 18 not upgraded.
+Need to get 1615 kB/48.8 MB of archives.
+After this operation, 98.2 MB of additional disk space will be used.
+Get:1 http://ftp.us.debian.org/debian/ sid/main r-bioc-limma i386 3.16.3~dfsg-1 [1615 kB]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 1615 kB in 4s (330 kB/s)
+Selecting previously unselected package libfreetype6:i386.
+(Reading database ... 16154 files and directories currently installed.)
+Unpacking libfreetype6:i386 (from .../libfreetype6_2.4.9-1.1_i386.deb) ...
+Selecting previously unselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ...
+Moving old data out of the way
+Selecting previously unselected package fonts-dejavu-core.
+Unpacking fonts-dejavu-core (from .../fonts-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ...
+Selecting previously unselected package libfontconfig1:i386.
+Unpacking libfontconfig1:i386 (from .../libfontconfig1_2.9.0-7.1_i386.deb) ...
+Selecting previously unselected package libpixman-1-0:i386.
+Unpacking libpixman-1-0:i386 (from .../libpixman-1-0_0.26.0-4_i386.deb) ...
+Selecting previously unselected package libpng12-0:i386.
+Unpacking libpng12-0:i386 (from .../libpng12-0_1.2.49-4_i386.deb) ...
+Selecting previously unselected package libxau6:i386.
+Unpacking libxau6:i386 (from .../libxau6_1%3a1.0.7-1_i386.deb) ...
+Selecting previously unselected package libxdmcp6:i386.
+Unpacking libxdmcp6:i386 (from .../libxdmcp6_1%3a1.1.1-1_i386.deb) ...
+Selecting previously unselected package libxcb1:i386.
+Unpacking libxcb1:i386 (from .../libxcb1_1.8.1-2_i386.deb) ...
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ...
+Selecting previously unselected package libx11-6:i386.
+Unpacking libx11-6:i386 (from .../libx11-6_2%3a1.5.0-1_i386.deb) ...
+Selecting previously unselected package libxcb-render0:i386.
+Unpacking libxcb-render0:i386 (from .../libxcb-render0_1.8.1-2_i386.deb) ...
+Selecting previously unselected package libxcb-shm0:i386.
+Unpacking libxcb-shm0:i386 (from .../libxcb-shm0_1.8.1-2_i386.deb) ...
+Selecting previously unselected package libxext6:i386.
+Unpacking libxext6:i386 (from .../libxext6_2%3a1.3.1-2_i386.deb) ...
+Selecting previously unselected package libxrender1:i386.
+Unpacking libxrender1:i386 (from .../libxrender1_1%3a0.9.7-1_i386.deb) ...
+Selecting previously unselected package libcairo2:i386.
+Unpacking libcairo2:i386 (from .../libcairo2_1.12.14-4_i386.deb) ...
+Selecting previously unselected package libdatrie1:i386.
+Unpacking libdatrie1:i386 (from .../libdatrie1_0.2.6-2_i386.deb) ...
+Selecting previously unselected package libgfortran3:i386.
+Unpacking libgfortran3:i386 (from .../libgfortran3_4.8.0-7_i386.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.7+3_all.deb) ...
+Selecting previously unselected package libice6:i386.
+Unpacking libice6:i386 (from .../libice6_2%3a1.0.8-2_i386.deb) ...
+Selecting previously unselected package libjpeg8:i386.
+Unpacking libjpeg8:i386 (from .../libjpeg8_8d-1_i386.deb) ...
+Selecting previously unselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.19-2_all.deb) ...
+Selecting previously unselected package libthai0:i386.
+Unpacking libthai0:i386 (from .../libthai0_0.1.19-2_i386.deb) ...
+Selecting previously unselected package libxft2:i386.
+Unpacking libxft2:i386 (from .../libxft2_2.3.1-1_i386.deb) ...
+Selecting previously unselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_i386.deb) ...
+Selecting previously unselected package libpango1.0-0:i386.
+Unpacking libpango1.0-0:i386 (from .../libpango1.0-0_1.30.0-1_i386.deb) ...
+Selecting previously unselected package libpaper1:i386.
+Unpacking libpaper1:i386 (from .../libpaper1_1.1.24+nmu2_i386.deb) ...
+Selecting previously unselected package libpcrecpp0:i386.
+Unpacking libpcrecpp0:i386 (from .../libpcrecpp0_1%3a8.31-2_i386.deb) ...
+Selecting previously unselected package libsm6:i386.
+Unpacking libsm6:i386 (from .../libsm6_2%3a1.2.1-2_i386.deb) ...
+Selecting previously unselected package libjbig0:i386.
+Unpacking libjbig0:i386 (from .../libjbig0_2.0-2_i386.deb) ...
+Selecting previously unselected package libtiff5:i386.
+Unpacking libtiff5:i386 (from .../libtiff5_4.0.2-6_i386.deb) ...
+Selecting previously unselected package libxss1:i386.
+Unpacking libxss1:i386 (from .../libxss1_1%3a1.2.2-1_i386.deb) ...
+Selecting previously unselected package libxt6:i386.
+Unpacking libxt6:i386 (from .../libxt6_1%3a1.1.3-1_i386.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
+Selecting previously unselected package libgfortran-4.7-dev:i386.
+Unpacking libgfortran-4.7-dev:i386 (from .../libgfortran-4.7-dev_4.7.3-4_i386.deb) ...
+Selecting previously unselected package gfortran-4.7.
+Unpacking gfortran-4.7 (from .../gfortran-4.7_4.7.3-4_i386.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.7.2-1_i386.deb) ...
+Selecting previously unselected package libblas3.
+Unpacking libblas3 (from .../libblas3_1.2.20110419-5_i386.deb) ...
+Selecting previously unselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_i386.deb) ...
+Selecting previously unselected package libjpeg8-dev:i386.
+Unpacking libjpeg8-dev:i386 (from .../libjpeg8-dev_8d-1_i386.deb) ...
+Selecting previously unselected package liblapack3.
+Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_i386.deb) ...
+Selecting previously unselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.4.2+dfsg-1_i386.deb) ...
+Selecting previously unselected package libtinfo-dev:i386.
+Unpacking libtinfo-dev:i386 (from .../libtinfo-dev_5.9+20130504-1_i386.deb) ...
+Selecting previously unselected package libncurses5-dev:i386.
+Unpacking libncurses5-dev:i386 (from .../libncurses5-dev_5.9+20130504-1_i386.deb) ...
+Selecting previously unselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_i386.deb) ...
+Selecting previously unselected package libpcre3-dev:i386.
+Unpacking libpcre3-dev:i386 (from .../libpcre3-dev_1%3a8.31-2_i386.deb) ...
+Selecting previously unselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_i386.deb) ...
+Selecting previously unselected package libreadline6-dev:i386.
+Unpacking libreadline6-dev:i386 (from .../libreadline6-dev_6.2+dfsg-0.1_i386.deb) ...
+Selecting previously unselected package libreadline-dev:i386.
+Unpacking libreadline-dev:i386 (from .../libreadline-dev_6.2+dfsg-0.1_i386.deb) ...
+Selecting previously unselected package zip.
+Unpacking zip (from .../archives/zip_3.0-7_i386.deb) ...
+Selecting previously unselected package unzip.
+Unpacking unzip (from .../archives/unzip_6.0-9_i386.deb) ...
+Selecting previously unselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
+Selecting previously unselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_i386.deb) ...
+Selecting previously unselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_i386.deb) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_3.0.1-1_i386.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_3.0.1-1_all.deb) ...
+Selecting previously unselected package r-bioc-limma.
+Unpacking r-bioc-limma (from .../r-bioc-limma_3.16.3~dfsg-1_i386.deb) ...
+Processing triggers for man-db ...
+Not building database; man-db/auto-update is not 'true'.
+Processing triggers for mime-support ...
+Setting up libfreetype6:i386 (2.4.9-1.1) ...
+Setting up ucf (3.0025+nmu3) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:i386 (2.9.0-7.1) ...
+Setting up libpixman-1-0:i386 (0.26.0-4) ...
+Setting up libpng12-0:i386 (1.2.49-4) ...
+Setting up libxau6:i386 (1:1.0.7-1) ...
+Setting up libxdmcp6:i386 (1:1.1.1-1) ...
+Setting up libxcb1:i386 (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:i386 (2:1.5.0-1) ...
+Setting up libxcb-render0:i386 (1.8.1-2) ...
+Setting up libxcb-shm0:i386 (1.8.1-2) ...
+Setting up libxext6:i386 (2:1.3.1-2) ...
+Setting up libxrender1:i386 (1:0.9.7-1) ...
+Setting up libcairo2:i386 (1.12.14-4) ...
+Setting up libdatrie1:i386 (0.2.6-2) ...
+Setting up libgfortran3:i386 (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6:i386 (2:1.0.8-2) ...
+Setting up libjpeg8:i386 (8d-1) ...
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:i386 (0.1.19-2) ...
+Setting up libxft2:i386 (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
+Regenerating fonts cache... done.
+Setting up libpango1.0-0:i386 (1.30.0-1) ...
+Setting up libpaper1:i386 (1.1.24+nmu2) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpcrecpp0:i386 (1:8.31-2) ...
+Setting up libsm6:i386 (2:1.2.1-2) ...
+Setting up libjbig0:i386 (2.0-2) ...
+Setting up libtiff5:i386 (4.0.2-6) ...
+Setting up libxss1:i386 (1:1.2.2-1) ...
+Setting up libxt6:i386 (1:1.1.3-1) ...
+Setting up cdbs (0.4.121) ...
+Setting up libgfortran-4.7-dev:i386 (4.7.3-4) ...
+Setting up gfortran-4.7 (4.7.3-4) ...
+Setting up gfortran (4:4.7.2-1) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libjpeg8-dev:i386 (8d-1) ...
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:i386 (5.9+20130504-1) ...
+Setting up libncurses5-dev:i386 (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:i386 (1:8.31-2) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:i386 (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:i386 (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.1-1) ...
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (3.0.1-1) ...
+Setting up r-bioc-limma (3.16.3~dfsg-1) ...
+Processing triggers for libc-bin ...
+ldconfig deferred processing now taking place
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages were automatically installed and are no longer required:
+ libexpat1-dev libffi5 libmpc2 libncursesw5 libreadline5 libruby1.8
+ libruby1.9.1 libsqlite3-0 libssl-dev libssl1.0.0 libyaml-0-2 mime-support
+ ruby ruby1.8 ruby1.8-dev ruby1.9.1 ruby1.9.1-dev rubygems
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 18 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.32-5-686-bigmem i386 (i686)
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.7_4.7.3-4 gcc-4.6_4.6.4-2 gcc-4.7_4.7.3-4 libc6-dev_2.17-3 libstdc++6_4.8.0-7 libstdc++6-4.7-dev_4.7.3-4 linux-libc-dev_3.8.11-1
+Package versions: apt_0.9.8 base-files_7.2 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.22-8 bison_2:2.5.dfsg-3 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.13-3.3 cpp_4:4.7.2-1 cpp-4.6_4.6.4-2 cpp-4.7_4.7.3-4 dash_0.5.7-3 debconf_1.5.50 debfoster_2.7-1.2 debhelper_9.20130509 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 fil [...]
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Fri May 17 13:25:10 2013 UTC using DSA key ID C09FD35A
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-edger_3.2.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-edger in r-bioc-edger-3.2.3~dfsg
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg-1.debian.tar.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: source package r-bioc-edger
+dpkg-buildpackage: source version 3.2.3~dfsg-1
+ dpkg-source --before-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: host architecture i386
+ fakeroot debian/rules clean
+test -x debian/rules
+dh_testroot
+dh_clean
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build-arch
+test -x debian/rules
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+ fakeroot debian/rules binary-arch
+test -x debian/rules
+dh_testroot
+dh_prep
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+dh_installdirs -A
+ install -d debian/r-bioc-edger
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-edger/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 3.0.1-1)" >> debian/r-bioc-edger.substvars
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-i386-PpPqYu/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-i386-PpPqYu/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'edgeR' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-i386-PpPqYu/r-bioc-edger-3.2.3~dfsg/src'
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c R_exact_test_by_deviance.cpp -o R_exact_test_by_deviance.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c R_loess_by_col.cpp -o R_loess_by_col.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c R_cr_adjust.cpp -o R_cr_adjust.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c R_levenberg.cpp -o R_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c R_maximize_interpolant.cpp -o R_maximize_interpolant.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c R_one_group.cpp -o R_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c R_simple_good_turing.cpp -o R_simple_good_turing.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c core/adj_coxreid.cpp -o core/adj_coxreid.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c core/glm_levenberg.cpp -o core/glm_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c core/glm_one_group.cpp -o core/glm_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c core/interpolator.cpp -o core/interpolator.o
+gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c core/fmm_spline.c -o core/fmm_spline.o
+g++ -shared -o edgeR.so R_exact_test_by_deviance.o R_loess_by_col.o R_cr_adjust.o R_levenberg.o R_maximize_interpolant.o R_one_group.o R_simple_good_turing.o core/adj_coxreid.o core/glm_levenberg.o core/glm_one_group.o core/interpolator.o core/fmm_spline.o -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-i386-PpPqYu/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-i386-PpPqYu/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-i386-PpPqYu/r-bioc-edger-3.2.3~dfsg/src'
+installing to /build/buildd-r-bioc-edger_3.2.3~dfsg-1-i386-PpPqYu/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs
+** R
+** data
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices
+** installing vignettes
+** testing if installed package can be loaded
+* DONE (edgeR)
+rm -vf /build/buildd-r-bioc-edger_3.2.3~dfsg-1-i386-PpPqYu/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-i386-PpPqYu/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/COPYING \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-i386-PpPqYu/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-edger_3.2.3~dfsg-1-i386-PpPqYu/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-i386-PpPqYu/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides/r-bioc-edger; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-edger.substvars
+dh_installdirs -pr-bioc-edger
+chmod 644 debian/r-bioc-edger/usr/lib/R/site-library/edgeR/doc/*
+dh_installdocs -pr-bioc-edger
+ install -g 0 -o 0 -d debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-edger_3.2.3~dfsg-1-i386-PpPqYu/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/doc/r-bioc-edger \;
+ cp -a debian/README.test debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ chown -R 0:0 debian/r-bioc-edger/usr/share/doc
+ chmod -R go=rX debian/r-bioc-edger/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-edger/usr/share/doc
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-edger/usr/share/doc/r-bioc-edger/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-edger/usr/share/doc/r-bioc-edger/copyright
+dh_installexamples -pr-bioc-edger
+dh_installman -pr-bioc-edger
+dh_installinfo -pr-bioc-edger
+dh_installmenu -pr-bioc-edger
+dh_installcron -pr-bioc-edger
+dh_installinit -pr-bioc-edger
+dh_installdebconf -pr-bioc-edger
+ install -o 0 -g 0 -d debian/r-bioc-edger/DEBIAN
+dh_installemacsen -pr-bioc-edger
+dh_installcatalogs -pr-bioc-edger
+ grep -s -v '^misc:Depends=' debian/r-bioc-edger.substvars > debian/r-bioc-edger.substvars.new || true
+ mv debian/r-bioc-edger.substvars.new debian/r-bioc-edger.substvars
+dh_installpam -pr-bioc-edger
+dh_installlogrotate -pr-bioc-edger
+dh_installlogcheck -pr-bioc-edger
+dh_installchangelogs -pr-bioc-edger
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-edger/usr/share/doc/r-bioc-edger/changelog.Debian
+dh_installudev -pr-bioc-edger
+dh_lintian -pr-bioc-edger
+dh_bugfiles -pr-bioc-edger
+dh_install -pr-bioc-edger
+dh_link -pr-bioc-edger
+dh_installmime -pr-bioc-edger
+dh_installgsettings -pr-bioc-edger
+dh_strip -pr-bioc-edger
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dh_compress -pr-bioc-edger
+ cd debian/r-bioc-edger
+ chmod a-x usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save usr/share/doc/r-bioc-edger/changelog.Debian
+ gzip -9nf usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save usr/share/doc/r-bioc-edger/changelog.Debian
+ cd '/build/buildd-r-bioc-edger_3.2.3~dfsg-1-i386-PpPqYu/r-bioc-edger-3.2.3~dfsg'
+dh_fixperms -pr-bioc-edger
+ find debian/r-bioc-edger -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-edger ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-edger/usr/share/doc -type f ! -regex 'debian/r-bioc-edger/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-edger/usr/share/man debian/r-bioc-edger/usr/man/ debian/r-bioc-edger/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/lib/perl5 debian/r-bioc-edger/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-edger/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
+dh_makeshlibs -pr-bioc-edger
+ rm -f debian/r-bioc-edger/DEBIAN/shlibs
+dh_installdeb -pr-bioc-edger
+dh_perl -pr-bioc-edger
+dh_shlibdeps -pr-bioc-edger
+ dpkg-shlibdeps -Tdebian/r-bioc-edger.substvars debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so was not linked against libquadmath.so.0 (it uses none of the library's symbols)
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so was not linked against libgfortran.so.3 (it uses none of the library's symbols)
+dh_gencontrol -pr-bioc-edger
+ echo misc:Depends= >> debian/r-bioc-edger.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-edger.substvars -Pdebian/r-bioc-edger
+dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
+ chmod 644 debian/r-bioc-edger/DEBIAN/control
+ chown 0:0 debian/r-bioc-edger/DEBIAN/control
+dh_md5sums -pr-bioc-edger
+ (cd debian/r-bioc-edger >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-edger/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-edger/DEBIAN/md5sums
+dh_builddeb -pr-bioc-edger -- -Z xz
+ dpkg-deb -Z xz --build debian/r-bioc-edger ..
+dpkg-deb: building package `r-bioc-edger' in `../r-bioc-edger_3.2.3~dfsg-1_i386.deb'.
+ dpkg-genchanges -B -mi386 Build Daemon (murphy) <buildd_i386-murphy at buildd.debian.org> >../r-bioc-edger_3.2.3~dfsg-1_i386.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20130517-1423
+
+r-bioc-edger_3.2.3~dfsg-1_i386.changes:
+Format: 1.8
+Date: Fri, 17 May 2013 14:36:51 +0200
+Source: r-bioc-edger
+Binary: r-bioc-edger
+Architecture: i386
+Version: 3.2.3~dfsg-1
+Distribution: sid
+Urgency: low
+Maintainer: i386 Build Daemon (murphy) <buildd_i386-murphy at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
+Description:
+ r-bioc-edger - Empirical analysis of digital gene expression data in R
+Changes:
+ r-bioc-edger (3.2.3~dfsg-1) unstable; urgency=low
+ .
+ [ Charles Plessy ]
+ 74f1a5f Imported Upstream version 2.6.10~dfsg
+ d2d70ab Corrected VCS URLs.
+ 44c9d4e Regression tests for autopkgtest.
+ .
+ [ Andreas Tille ]
+ * Imported new upstream version 3.2.3~dfsg
+ * debian/control
+ - Added myself as Uploader
+ - Add ${shlibs:Depends} to ensure dependency from libc
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - normalised format
+ - Removed unneeded Pre-Depends: dpkg (>= 1.15.6)
+ - Removed versioned dependency of r-base-dev
+ - Package is "Architecture: any" (rather than all)
+ * debian/source/format: Add explicit source format specification
+ * debian/copyright:
+ - Update Source location
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - Add years to Copyright field
+ * debian/upstream: inst/CITATION asks for citing this more recent
+ paper that is now on top of debian/upstream
+ * debian/rules: remove executable flag from installed documentation
+Checksums-Sha1:
+ f286d4b65f026318761a4f30d689c779ec4ecd78 1365782 r-bioc-edger_3.2.3~dfsg-1_i386.deb
+Checksums-Sha256:
+ 21c04b4c2640acc19f05d990baa5cf7509dd17e239c6282d544e992e86b8152f 1365782 r-bioc-edger_3.2.3~dfsg-1_i386.deb
+Files:
+ da81b1fbd1f44ed994296ad36bfb7b37 1365782 gnu-r optional r-bioc-edger_3.2.3~dfsg-1_i386.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-edger_3.2.3~dfsg-1_i386.deb
+──────────────────────────────────
+
+ new debian package, version 2.0.
+ size 1365782 bytes: control archive= 1870 bytes.
+ 981 bytes, 17 lines control
+ 2932 bytes, 38 lines md5sums
+ Package: r-bioc-edger
+ Version: 3.2.3~dfsg-1
+ Architecture: i386
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 2475
+ Depends: r-base-core (>= 3.0.1-1), r-bioc-limma, libblas3 | libblas.so.3 | libatlas3-base, libc6 (>= 2.1.3), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3), liblapack3 | liblapack.so.3 | libatlas3-base, libquadmath0 (>= 4.6), libstdc++6 (>= 4.2.1)
+ Suggests: r-cran-mass
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
+ Description: Empirical analysis of digital gene expression data in R
+ Bioconductor package for differential expression analysis of whole
+ transcriptome sequencing (RNA-seq) and digital gene expression
+ profiles with biological replication. It uses empirical Bayes
+ estimation and exact tests based on the negative binomial
+ distribution. It is also useful for differential signal analysis with
+ other types of genome-scale count data.
+
+drwxr-xr-x root/root 0 2013-05-17 14:23 ./
+drwxr-xr-x root/root 0 2013-05-17 14:23 ./usr/
+drwxr-xr-x root/root 0 2013-05-17 14:22 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-17 14:22 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-17 14:23 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-17 14:23 ./usr/lib/R/site-library/edgeR/
+-rw-r--r-- root/root 6834 2013-05-17 14:23 ./usr/lib/R/site-library/edgeR/INDEX
+drwxr-xr-x root/root 0 2013-05-17 14:23 ./usr/lib/R/site-library/edgeR/html/
+-rw-r--r-- root/root 1179 2013-05-17 14:23 ./usr/lib/R/site-library/edgeR/html/R.css
+-rw-r--r-- root/root 22781 2013-05-17 14:23 ./usr/lib/R/site-library/edgeR/html/00Index.html
+-rw-r--r-- root/root 804 2013-05-17 14:22 ./usr/lib/R/site-library/edgeR/NAMESPACE
+-rw-r--r-- root/root 2057 2013-05-17 14:22 ./usr/lib/R/site-library/edgeR/CITATION
+drwxr-xr-x root/root 0 2013-05-17 14:23 ./usr/lib/R/site-library/edgeR/libs/
+-rw-r--r-- root/root 41564 2013-05-17 14:23 ./usr/lib/R/site-library/edgeR/libs/edgeR.so
+drwxr-xr-x root/root 0 2013-05-17 14:22 ./usr/lib/R/site-library/edgeR/data/
+-rw-r--r-- root/root 263571 2013-05-17 14:22 ./usr/lib/R/site-library/edgeR/data/Tu98.txt
+-rw-r--r-- root/root 19 2013-05-17 14:22 ./usr/lib/R/site-library/edgeR/data/datalist
+-rw-r--r-- root/root 318545 2013-05-17 14:22 ./usr/lib/R/site-library/edgeR/data/Tu102.txt
+-rw-r--r-- root/root 228426 2013-05-17 14:22 ./usr/lib/R/site-library/edgeR/data/NC2.txt
+-rw-r--r-- root/root 248500 2013-05-17 14:22 ./usr/lib/R/site-library/edgeR/data/NC1.txt
+drwxr-xr-x root/root 0 2013-05-17 14:22 ./usr/lib/R/site-library/edgeR/R/
+-rw-r--r-- root/root 2299 2013-05-17 14:22 ./usr/lib/R/site-library/edgeR/R/edgeR.rdx
+-rw-r--r-- root/root 116077 2013-05-17 14:22 ./usr/lib/R/site-library/edgeR/R/edgeR.rdb
+-rw-r--r-- root/root 1056 2013-05-17 14:22 ./usr/lib/R/site-library/edgeR/R/edgeR
+-rw-r--r-- root/root 13746 2013-05-17 14:22 ./usr/lib/R/site-library/edgeR/NEWS.Rd
+drwxr-xr-x root/root 0 2013-05-17 14:23 ./usr/lib/R/site-library/edgeR/help/
+-rw-r--r-- root/root 1765 2013-05-17 14:23 ./usr/lib/R/site-library/edgeR/help/edgeR.rdx
+-rw-r--r-- root/root 1342 2013-05-17 14:23 ./usr/lib/R/site-library/edgeR/help/aliases.rds
+-rw-r--r-- root/root 3776 2013-05-17 14:23 ./usr/lib/R/site-library/edgeR/help/AnIndex
+-rw-r--r-- root/root 805 2013-05-17 14:23 ./usr/lib/R/site-library/edgeR/help/paths.rds
+-rw-r--r-- root/root 230718 2013-05-17 14:23 ./usr/lib/R/site-library/edgeR/help/edgeR.rdb
+drwxr-xr-x root/root 0 2013-05-17 14:23 ./usr/lib/R/site-library/edgeR/doc/
+-rw-r--r-- root/root 691 2013-05-17 14:22 ./usr/lib/R/site-library/edgeR/doc/index.html
+-rw-r--r-- root/root 1826 2013-05-17 14:22 ./usr/lib/R/site-library/edgeR/doc/edgeR.Rnw
+-rw-r--r-- root/root 879697 2013-05-17 14:22 ./usr/lib/R/site-library/edgeR/doc/edgeRUsersGuide.pdf
+-rw-r--r-- root/root 49354 2013-05-17 14:22 ./usr/lib/R/site-library/edgeR/doc/edgeR.pdf
+drwxr-xr-x root/root 0 2013-05-17 14:23 ./usr/lib/R/site-library/edgeR/Meta/
+-rw-r--r-- root/root 992 2013-05-17 14:22 ./usr/lib/R/site-library/edgeR/Meta/package.rds
+-rw-r--r-- root/root 228 2013-05-17 14:23 ./usr/lib/R/site-library/edgeR/Meta/vignette.rds
+-rw-r--r-- root/root 368 2013-05-17 14:23 ./usr/lib/R/site-library/edgeR/Meta/nsInfo.rds
+-rw-r--r-- root/root 3639 2013-05-17 14:23 ./usr/lib/R/site-library/edgeR/Meta/Rd.rds
+-rw-r--r-- root/root 161 2013-05-17 14:23 ./usr/lib/R/site-library/edgeR/Meta/data.rds
+-rw-r--r-- root/root 1640 2013-05-17 14:23 ./usr/lib/R/site-library/edgeR/Meta/links.rds
+-rw-r--r-- root/root 3475 2013-05-17 14:23 ./usr/lib/R/site-library/edgeR/Meta/hsearch.rds
+-rw-r--r-- root/root 1106 2013-05-17 14:22 ./usr/lib/R/site-library/edgeR/DESCRIPTION
+drwxr-xr-x root/root 0 2013-05-17 14:23 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-17 14:23 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-17 14:23 ./usr/share/doc/r-bioc-edger/
+-rw-r--r-- root/root 1384 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/changelog.Debian.gz
+-rw-r--r-- root/root 1404 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/copyright
+-rw-r--r-- root/root 274 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.Debian
+-rw-r--r-- root/root 816 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.test
+drwxr-xr-x root/root 0 2013-05-17 14:23 ./usr/share/doc/r-bioc-edger/tests/
+-rw-r--r-- root/root 5706 2013-04-08 00:02 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save.gz
+-rw-r--r-- root/root 1392 2013-04-03 22:17 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R.gz
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-i386-sbuild-d87ed311-2f5d-4551-9608-e32134421e11/build/buildd-r-bioc-edger_3.2.3~dfsg-1-i386-PpPqYu
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages were automatically installed and are no longer required:
+ libexpat1-dev libffi5 libmpc2 libncursesw5 libreadline5 libruby1.8
+ libruby1.9.1 libsqlite3-0 libssl-dev libssl1.0.0 libyaml-0-2 mime-support
+ ruby ruby1.8 ruby1.8-dev ruby1.9.1 ruby1.9.1-dev rubygems
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 18 not upgraded.
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages were automatically installed and are no longer required:
+ libexpat1 libexpat1-dev libffi5 libmpc2 libncursesw5 libreadline5 libruby1.8
+ libruby1.9.1 libsqlite3-0 libssl-dev libssl1.0.0 libyaml-0-2 mime-support
+ ruby ruby1.8 ruby1.8-dev ruby1.9.1 ruby1.9.1-dev rubygems zlib1g-dev
+Use 'apt-get autoremove' to remove them.
+The following packages will be REMOVED:
+ cdbs* fontconfig* fontconfig-config* fonts-dejavu-core* gfortran*
+ gfortran-4.7* libblas-dev* libblas3* libcairo2* libdatrie1* libfontconfig1*
+ libfreetype6* libgfortran-4.7-dev* libgfortran3* libice6* libjbig0*
+ libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3* libncurses5-dev*
+ libpango1.0-0* libpaper-utils* libpaper1* libpcre3-dev* libpcrecpp0*
+ libpixman-1-0* libpng12-0* libpng12-dev* libreadline-dev* libreadline6-dev*
+ libsm6* libthai-data* libthai0* libtiff5* libtinfo-dev* libx11-6*
+ libx11-data* libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6*
+ libxext6* libxft2* libxrender1* libxss1* libxt6* r-base-core* r-base-dev*
+ r-bioc-limma* tcl8.5* tk8.5* ttf-dejavu-core* ucf* unzip* x11-common*
+ xdg-utils* zip*
+0 upgraded, 0 newly installed, 59 to remove and 18 not upgraded.
+After this operation, 98.2 MB disk space will be freed.
+(Reading database ... 18755 files and directories currently installed.)
+Removing r-base-dev ...
+Removing cdbs ...
+Removing r-bioc-limma ...
+Removing r-base-core ...
+Purging configuration files for r-base-core ...
+Removing libpango1.0-0:i386 ...
+Purging configuration files for libpango1.0-0:i386 ...
+Removing fontconfig ...
+Purging configuration files for fontconfig ...
+Removing tk8.5 ...
+Purging configuration files for tk8.5 ...
+Removing libxft2:i386 ...
+Purging configuration files for libxft2:i386 ...
+Removing libcairo2:i386 ...
+Purging configuration files for libcairo2:i386 ...
+Removing libfontconfig1:i386 ...
+Purging configuration files for libfontconfig1:i386 ...
+Removing fontconfig-config ...
+Purging configuration files for fontconfig-config ...
+Removing ttf-dejavu-core ...
+Removing fonts-dejavu-core ...
+Purging configuration files for fonts-dejavu-core ...
+Removing gfortran ...
+Removing gfortran-4.7 ...
+Removing liblapack-dev ...
+Removing libblas-dev ...
+Removing liblapack3 ...
+Removing libblas3 ...
+Removing libthai0:i386 ...
+Purging configuration files for libthai0:i386 ...
+Removing libdatrie1:i386 ...
+Purging configuration files for libdatrie1:i386 ...
+Removing libfreetype6:i386 ...
+Purging configuration files for libfreetype6:i386 ...
+Removing libgfortran-4.7-dev:i386 ...
+Removing libgfortran3:i386 ...
+Purging configuration files for libgfortran3:i386 ...
+Removing libxt6:i386 ...
+Purging configuration files for libxt6:i386 ...
+Removing libsm6:i386 ...
+Purging configuration files for libsm6:i386 ...
+Removing libice6:i386 ...
+Purging configuration files for libice6:i386 ...
+Removing libtiff5:i386 ...
+Purging configuration files for libtiff5:i386 ...
+Removing libjbig0:i386 ...
+Purging configuration files for libjbig0:i386 ...
+Removing libjpeg8-dev:i386 ...
+Removing libjpeg8:i386 ...
+Removing libncurses5-dev:i386 ...
+Removing libpaper-utils ...
+Removing libpaper1:i386 ...
+Purging configuration files for libpaper1:i386 ...
+Removing libpcre3-dev:i386 ...
+Removing libpcrecpp0:i386 ...
+Purging configuration files for libpcrecpp0:i386 ...
+Removing libpixman-1-0:i386 ...
+Purging configuration files for libpixman-1-0:i386 ...
+Removing libpng12-dev ...
+Removing libpng12-0:i386 ...
+Purging configuration files for libpng12-0:i386 ...
+Removing libreadline-dev:i386 ...
+Removing libreadline6-dev:i386 ...
+Removing libthai-data ...
+Removing libtinfo-dev:i386 ...
+Removing libxss1:i386 ...
+Purging configuration files for libxss1:i386 ...
+Removing libxrender1:i386 ...
+Purging configuration files for libxrender1:i386 ...
+Removing libxext6:i386 ...
+Purging configuration files for libxext6:i386 ...
+Removing libx11-6:i386 ...
+Purging configuration files for libx11-6:i386 ...
+Removing libx11-data ...
+Removing libxcb-shm0:i386 ...
+Purging configuration files for libxcb-shm0:i386 ...
+Removing libxcb-render0:i386 ...
+Purging configuration files for libxcb-render0:i386 ...
+Removing libxcb1:i386 ...
+Purging configuration files for libxcb1:i386 ...
+Removing libxau6:i386 ...
+Purging configuration files for libxau6:i386 ...
+Removing libxdmcp6:i386 ...
+Purging configuration files for libxdmcp6:i386 ...
+Removing tcl8.5 ...
+Purging configuration files for tcl8.5 ...
+Removing ucf ...
+Purging configuration files for ucf ...
+Removing unzip ...
+Purging configuration files for unzip ...
+Removing x11-common ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of stop.
+Purging configuration files for x11-common ...
+Removing xdg-utils ...
+Removing zip ...
+Processing triggers for man-db ...
+Not building database; man-db/auto-update is not 'true'.
+Processing triggers for mime-support ...
+Processing triggers for libc-bin ...
+ldconfig deferred processing now taking place
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: i386
+Build-Space: 6864
+Build-Time: 29
+Distribution: sid
+Install-Time: 27
+Job: r-bioc-edger_3.2.3~dfsg-1
+Package: r-bioc-edger
+Package-Time: 69
+Source-Version: 3.2.3~dfsg-1
+Space: 6864
+Status: successful
+Version: 3.2.3~dfsg-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20130517-1423
+Build needed 00:01:09, 6864k disc space
+Signature with key '76D9491D' requested:
diff --git a/ia64.log b/ia64.log
new file mode 100644
index 0000000..8fa4db7
--- /dev/null
+++ b/ia64.log
@@ -0,0 +1,1012 @@
+From buildd at mundy.debian.org Sun May 19 21:31:49 2013
+Return-path: <buildd at mundy.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at mundy.debian.org>)
+ id 1UeBCm-0005Rf-GJ
+ for logs at buildd.debian.org; Sun, 19 May 2013 21:31:48 +0000
+Received: from mundy.debian.org ([192.25.206.62])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=mundy.debian.org, EMAIL=hostmaster at mundy.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at mundy.debian.org>)
+ id 1UeBCk-0004rb-Ns; Sun, 19 May 2013 21:31:47 +0000
+Received: from buildd by mundy.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at mundy.debian.org>)
+ id 1UeBCi-00050S-Cm; Sun, 19 May 2013 21:31:44 +0000
+Date: Sun, 19 May 2013 21:31:44 +0000
+Message-Id: <E1UeBCi-00050S-Cm at mundy.debian.org>
+From: buildd on mundy <buildd at mundy.debian.org>
+To: dannf at master.debian.org,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-edger_3.2.3~dfsg-1 on ia64
+ (dist=sid)
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on mundy.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-edger 3.2.3~dfsg-1 (ia64) 19 May 2013 21:25 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-edger
+Version: 3.2.3~dfsg-1
+Source Version: 3.2.3~dfsg-1
+Architecture: ia64
+Get:1 http://spohr.debian.org unstable Release.gpg [1571 B]
+Get:2 http://spohr.debian.org unstable Release [203 kB]
+Get:3 http://incoming.debian.org unstable Release.gpg [1571 B]
+Get:4 http://incoming.debian.org buildd-unstable Release.gpg [1571 B]
+Get:5 http://incoming.debian.org unstable Release [203 kB]
+Get:6 http://spohr.debian.org unstable/main Sources [6721 kB]
+Get:7 http://incoming.debian.org buildd-unstable Release [109 kB]
+Get:8 http://spohr.debian.org unstable/contrib Sources [54.2 kB]
+Get:9 http://spohr.debian.org unstable/non-free Sources [103 kB]
+Get:10 http://spohr.debian.org unstable/main ia64 Packages [6059 kB]
+Get:11 http://incoming.debian.org unstable/main Sources [6715 kB]
+Get:12 http://spohr.debian.org unstable/contrib ia64 Packages [37.9 kB]
+Get:13 http://incoming.debian.org unstable/contrib Sources [54.2 kB]
+Get:14 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:15 http://incoming.debian.org unstable/main ia64 Packages [6052 kB]
+Get:16 http://incoming.debian.org unstable/contrib ia64 Packages [37.9 kB]
+Get:17 http://incoming.debian.org buildd-unstable/main Sources [84.6 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib Sources [935 B]
+Get:19 http://incoming.debian.org buildd-unstable/non-free Sources [740 B]
+Get:20 http://incoming.debian.org buildd-unstable/main ia64 Packages [54.0 kB]
+Get:21 http://incoming.debian.org buildd-unstable/contrib ia64 Packages [14 B]
+Fetched 26.6 MB in 24s (1102 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-edger' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/debian-med/r-bioc-edger.git
+Need to get 1218 kB of source archives.
+Get:1 http://spohr.debian.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (dsc) [1445 B]
+Get:2 http://spohr.debian.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (tar) [1212 kB]
+Get:3 http://spohr.debian.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (diff) [4311 B]
+Fetched 1218 kB in 0s (2662 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.6)
+fakeroot: already installed (1.18.4-2)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 46 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 46 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-edger build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6.1-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev, r-bioc-limma
+Checking for already installed dependencies...
+base-files: already installed (7.1)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2+dfsg-0.1)
+bsdutils: already installed (1:2.20.1-5.3)
+coreutils: already installed (8.13-3.2)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1.1)
+findutils: already installed (4.4.2-5)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+libc-bin: already installed (2.13-38)
+login: already installed (1:4.1.5.1-1)
+mount: already installed (2.20.1-5.3)
+ncurses-base: already installed (5.9-10)
+ncurses-bin: already installed (5.9-10)
+perl-base: already installed (5.14.2-20)
+sed: already installed (4.2.1-10)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-0.1)
+util-linux: already installed (2.20.1-5.3)
+libc6.1-dev: already installed (2.13-38)
+gcc: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
+debhelper: missing
+Using default version 9.20130518
+cdbs: missing
+r-base-dev: missing
+r-bioc-limma: missing
+Checking for dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev r-bioc-limma
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following package was automatically installed and is no longer required:
+ libmpc2
+Use 'apt-get autoremove' to remove it.
+The following extra packages will be installed:
+ bsdmainutils cpp-4.6 file fontconfig fontconfig-config fonts-dejavu-core
+ g++-4.6 gcc-4.6 gcc-4.6-base gcc-4.8-base gettext gettext-base gfortran
+ gfortran-4.6 groff-base html2text intltool-debian libasprintf-dev
+ libasprintf0c2 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6.1
+ libc6.1-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi6 libfontconfig1
+ libfreetype6 libgettextpo-dev libgettextpo0 libgfortran3 libglib2.0-0
+ libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1
+ libmpc3 libncurses5 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
+ libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libstdc++6-4.6-dev libthai-data
+ libthai0 libtiff5 libtinfo-dev libtinfo5 libunistring0 libx11-6 libx11-data
+ libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
+ libxml2 libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf r-base-core
+ tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g
+ zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make
+ gcc-4.6-doc libstdc++6-4.6-dbg libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg
+ libquadmath0-dbg libmudflap0-dbg libcloog-ppl0 libppl-c2 libppl7 gettext-doc
+ gfortran-doc gfortran-4.6-doc libgfortran3-dbg groff glibc-doc ncurses-doc
+ ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
+ texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
+ texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
+ texi2html tcl-tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev curl wget lynx-cur autopoint manpages-dev libglib2.0-data
+ shared-mime-info libgpm2 xml-core libmail-sendmail-perl r-recommended
+ r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper file fontconfig fontconfig-config
+ fonts-dejavu-core gcc-4.8-base gettext gettext-base gfortran gfortran-4.6
+ groff-base html2text intltool-debian libasprintf-dev libasprintf0c2
+ libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libffi6 libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0
+ libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3 libmagic1 libmpc3 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0
+ libpng12-0 libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data
+ libthai0 libtiff5 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6
+ libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
+ libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev
+ r-bioc-limma tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+ zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libc-dev-bin libc6.1 libc6.1-dev
+ libncurses5 libstdc++6-4.6-dev libtinfo5 ncurses-bin zlib1g
+12 upgraded, 84 newly installed, 0 to remove and 34 not upgraded.
+Need to get 104 MB of archives.
+After this operation, 183 MB of additional disk space will be used.
+Get:1 http://spohr.debian.org/debian/ unstable/main libc6.1-dev ia64 2.17-3 [3398 kB]
+Get:2 http://spohr.debian.org/debian/ unstable/main libc-dev-bin ia64 2.17-3 [262 kB]
+Get:3 http://spohr.debian.org/debian/ unstable/main libc6.1 ia64 2.17-3 [4777 kB]
+Get:4 http://spohr.debian.org/debian/ unstable/main libtinfo5 ia64 5.9+20130504-1 [323 kB]
+Get:5 http://spohr.debian.org/debian/ unstable/main libncurses5 ia64 5.9+20130504-1 [167 kB]
+Get:6 http://spohr.debian.org/debian/ unstable/main ncurses-bin ia64 5.9+20130504-1 [386 kB]
+Get:7 http://spohr.debian.org/debian/ unstable/main zlib1g ia64 1:1.2.8.dfsg-1 [119 kB]
+Get:8 http://spohr.debian.org/debian/ unstable/main libpipeline1 ia64 1.2.3-1 [49.3 kB]
+Get:9 http://spohr.debian.org/debian/ unstable/main groff-base ia64 1.22.2-2 [831 kB]
+Get:10 http://spohr.debian.org/debian/ unstable/main bsdmainutils ia64 9.0.5 [242 kB]
+Get:11 http://spohr.debian.org/debian/ unstable/main man-db ia64 2.6.3-6 [924 kB]
+Get:12 http://spohr.debian.org/debian/ unstable/main libasprintf0c2 ia64 0.18.1.1-10 [27.7 kB]
+Get:13 http://spohr.debian.org/debian/ unstable/main libmagic1 ia64 1:5.14-1 [235 kB]
+Get:14 http://spohr.debian.org/debian/ unstable/main libxml2 ia64 2.8.0+dfsg1-7+nmu1 [1184 kB]
+Get:15 http://spohr.debian.org/debian/ unstable/main libexpat1 ia64 2.1.0-3 [215 kB]
+Get:16 http://spohr.debian.org/debian/ unstable/main libfreetype6 ia64 2.4.9-1.1 [627 kB]
+Get:17 http://spohr.debian.org/debian/ unstable/main ucf all 3.0027 [71.4 kB]
+Get:18 http://spohr.debian.org/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
+Get:19 http://spohr.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
+Get:20 http://spohr.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:21 http://spohr.debian.org/debian/ unstable/main libfontconfig1 ia64 2.9.0-7.1 [336 kB]
+Get:22 http://spohr.debian.org/debian/ unstable/main libpixman-1-0 ia64 0.26.0-4 [452 kB]
+Get:23 http://spohr.debian.org/debian/ unstable/main libpng12-0 ia64 1.2.49-4 [222 kB]
+Get:24 http://spohr.debian.org/debian/ unstable/main libxau6 ia64 1:1.0.7-1 [20.1 kB]
+Get:25 http://spohr.debian.org/debian/ unstable/main libxdmcp6 ia64 1:1.1.1-1 [29.1 kB]
+Get:26 http://spohr.debian.org/debian/ unstable/main libxcb1 ia64 1.8.1-2 [56.3 kB]
+Get:27 http://spohr.debian.org/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:28 http://spohr.debian.org/debian/ unstable/main libx11-6 ia64 2:1.5.0-1 [1079 kB]
+Get:29 http://spohr.debian.org/debian/ unstable/main libxcb-render0 ia64 1.8.1-2 [19.8 kB]
+Get:30 http://spohr.debian.org/debian/ unstable/main libxcb-shm0 ia64 1.8.1-2 [11.1 kB]
+Get:31 http://spohr.debian.org/debian/ unstable/main libxext6 ia64 2:1.3.1-2 [71.0 kB]
+Get:32 http://spohr.debian.org/debian/ unstable/main libxrender1 ia64 1:0.9.7-1 [40.4 kB]
+Get:33 http://spohr.debian.org/debian/ unstable/main libcairo2 ia64 1.12.14-4 [1309 kB]
+Get:34 http://spohr.debian.org/debian/ unstable/main libffi6 ia64 3.0.13-4 [28.4 kB]
+Get:35 http://spohr.debian.org/debian/ unstable/main libglib2.0-0 ia64 2.36.1-2build1 [2169 kB]
+Get:36 http://spohr.debian.org/debian/ unstable/main libcroco3 ia64 0.6.8-2 [143 kB]
+Get:37 http://spohr.debian.org/debian/ unstable/main libdatrie1 ia64 0.2.6-2 [33.1 kB]
+Get:38 http://spohr.debian.org/debian/ unstable/main libunistring0 ia64 0.9.3-5 [463 kB]
+Get:39 http://spohr.debian.org/debian/ unstable/main libgettextpo0 ia64 0.18.1.1-10 [206 kB]
+Get:40 http://spohr.debian.org/debian/ unstable/main gcc-4.8-base ia64 4.8.0-7 [148 kB]
+Get:41 http://spohr.debian.org/debian/ unstable/main libgfortran3 ia64 4.8.0-7 [474 kB]
+Get:42 http://spohr.debian.org/debian/ unstable/main x11-common all 1:7.7+3 [284 kB]
+Get:43 http://spohr.debian.org/debian/ unstable/main libice6 ia64 2:1.0.8-2 [82.2 kB]
+Get:44 http://spohr.debian.org/debian/ unstable/main libjpeg8 ia64 8d-1 [244 kB]
+Get:45 http://spohr.debian.org/debian/ unstable/main libthai-data all 0.1.19-2 [156 kB]
+Get:46 http://spohr.debian.org/debian/ unstable/main libthai0 ia64 0.1.19-2 [46.4 kB]
+Get:47 http://spohr.debian.org/debian/ unstable/main libxft2 ia64 2.3.1-1 [80.7 kB]
+Get:48 http://spohr.debian.org/debian/ unstable/main fontconfig ia64 2.9.0-7.1 [352 kB]
+Get:49 http://spohr.debian.org/debian/ unstable/main libpango1.0-0 ia64 1.30.0-1 [581 kB]
+Get:50 http://spohr.debian.org/debian/ unstable/main libpaper1 ia64 1.1.24+nmu2 [23.1 kB]
+Get:51 http://spohr.debian.org/debian/ unstable/main libpcrecpp0 ia64 1:8.31-2 [131 kB]
+Get:52 http://spohr.debian.org/debian/ unstable/main libsm6 ia64 2:1.2.1-2 [40.9 kB]
+Get:53 http://spohr.debian.org/debian/ unstable/main libjbig0 ia64 2.0-2 [47.6 kB]
+Get:54 http://spohr.debian.org/debian/ unstable/main libtiff5 ia64 4.0.2-6 [318 kB]
+Get:55 http://spohr.debian.org/debian/ unstable/main libxss1 ia64 1:1.2.2-1 [19.1 kB]
+Get:56 http://spohr.debian.org/debian/ unstable/main libxt6 ia64 1:1.1.3-1 [288 kB]
+Get:57 http://spohr.debian.org/debian/ unstable/main libmpc3 ia64 1.0.1-1 [62.3 kB]
+Get:58 http://spohr.debian.org/debian/ unstable/main file ia64 1:5.14-1 [55.9 kB]
+Get:59 http://spohr.debian.org/debian/ unstable/main gettext-base ia64 0.18.1.1-10 [173 kB]
+Get:60 http://spohr.debian.org/debian/ unstable/main cdbs all 0.4.121 [80.5 kB]
+Get:61 http://spohr.debian.org/debian/ unstable/main libstdc++6-4.6-dev ia64 4.6.4-2 [1870 kB]
+Get:62 http://spohr.debian.org/debian/ unstable/main g++-4.6 ia64 4.6.4-2 [7062 kB]
+Get:63 http://spohr.debian.org/debian/ unstable/main gcc-4.6 ia64 4.6.4-2 [6193 kB]
+Get:64 http://spohr.debian.org/debian/ unstable/main cpp-4.6 ia64 4.6.4-2 [5908 kB]
+Get:65 http://spohr.debian.org/debian/ unstable/main gcc-4.6-base ia64 4.6.4-2 [143 kB]
+Get:66 http://spohr.debian.org/debian/ unstable/main html2text ia64 1.3.2a-15 [134 kB]
+Get:67 http://spohr.debian.org/debian/ unstable/main libasprintf-dev ia64 0.18.1.1-10 [27.4 kB]
+Get:68 http://spohr.debian.org/debian/ unstable/main libgettextpo-dev ia64 0.18.1.1-10 [256 kB]
+Get:69 http://spohr.debian.org/debian/ unstable/main gettext ia64 0.18.1.1-10 [2033 kB]
+Get:70 http://spohr.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:71 http://spohr.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:72 http://spohr.debian.org/debian/ unstable/main debhelper all 9.20130518 [708 kB]
+Get:73 http://spohr.debian.org/debian/ unstable/main gfortran-4.6 ia64 4.6.4-2 [6995 kB]
+Get:74 http://spohr.debian.org/debian/ unstable/main gfortran ia64 4:4.6.3-8 [1124 B]
+Get:75 http://spohr.debian.org/debian/ unstable/main libblas3 ia64 1.2.20110419-5 [335 kB]
+Get:76 http://spohr.debian.org/debian/ unstable/main libblas-dev ia64 1.2.20110419-5 [367 kB]
+Get:77 http://spohr.debian.org/debian/ unstable/main libbz2-dev ia64 1.0.6-4 [51.7 kB]
+Get:78 http://spohr.debian.org/debian/ unstable/main libjpeg8-dev ia64 8d-1 [355 kB]
+Get:79 http://spohr.debian.org/debian/ unstable/main liblapack3 ia64 3.4.2+dfsg-1 [7550 kB]
+Get:80 http://spohr.debian.org/debian/ unstable/main liblapack-dev ia64 3.4.2+dfsg-1 [8319 kB]
+Get:81 http://spohr.debian.org/debian/ unstable/main libtinfo-dev ia64 5.9+20130504-1 [140 kB]
+Get:82 http://spohr.debian.org/debian/ unstable/main libncurses5-dev ia64 5.9+20130504-1 [299 kB]
+Get:83 http://spohr.debian.org/debian/ unstable/main libpaper-utils ia64 1.1.24+nmu2 [19.6 kB]
+Get:84 http://spohr.debian.org/debian/ unstable/main libpcre3-dev ia64 1:8.31-2 [414 kB]
+Get:85 http://spohr.debian.org/debian/ unstable/main zlib1g-dev ia64 1:1.2.8.dfsg-1 [253 kB]
+Get:86 http://spohr.debian.org/debian/ unstable/main libpng12-dev ia64 1.2.49-4 [306 kB]
+Get:87 http://spohr.debian.org/debian/ unstable/main libreadline6-dev ia64 6.2+dfsg-0.1 [265 kB]
+Get:88 http://spohr.debian.org/debian/ unstable/main libreadline-dev ia64 6.2+dfsg-0.1 [896 B]
+Get:89 http://spohr.debian.org/debian/ unstable/main zip ia64 3.0-7 [443 kB]
+Get:90 http://spohr.debian.org/debian/ unstable/main unzip ia64 6.0-9 [266 kB]
+Get:91 http://spohr.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:92 http://spohr.debian.org/debian/ unstable/main tcl8.5 ia64 8.5.11-2 [1906 kB]
+Get:93 http://spohr.debian.org/debian/ unstable/main tk8.5 ia64 8.5.11-2 [1516 kB]
+Get:94 http://spohr.debian.org/debian/ unstable/main r-base-core ia64 3.0.1-1 [22.7 MB]
+Get:95 http://spohr.debian.org/debian/ unstable/main r-base-dev all 3.0.1-1 [3896 B]
+Get:96 http://spohr.debian.org/debian/ unstable/main r-bioc-limma ia64 3.16.3~dfsg-1 [1621 kB]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 104 MB in 15s (6884 kB/s)
+(Reading database ... 10780 files and directories currently installed.)
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+Setting up libxrender1:ia64 (1:0.9.7-1) ...
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+Setting up libffi6:ia64 (3.0.13-4) ...
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+No schema files found: doing nothing.
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+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
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+Setting up fontconfig (2.9.0-7.1) ...
+Regenerating fonts cache... done.
+Setting up libpango1.0-0:ia64 (1.30.0-1) ...
+Setting up libpaper1:ia64 (1.1.24+nmu2) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpcrecpp0:ia64 (1:8.31-2) ...
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+Setting up libxss1:ia64 (1:1.2.2-1) ...
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+Setting up libmpc3:ia64 (1.0.1-1) ...
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+Setting up libgettextpo-dev:ia64 (0.18.1.1-10) ...
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+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
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+Setting up libtinfo-dev:ia64 (5.9+20130504-1) ...
+Setting up libncurses5-dev:ia64 (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:ia64 (1:8.31-2) ...
+Setting up zlib1g-dev:ia64 (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:ia64 (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:ia64 (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.1-1) ...
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (3.0.1-1) ...
+Setting up r-bioc-limma (3.16.3~dfsg-1) ...
+Setting up g++-4.6 (4.6.4-2) ...
+Setting up libstdc++6-4.6-dev (4.6.4-2) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following package was automatically installed and is no longer required:
+ libmpc2
+Use 'apt-get autoremove' to remove it.
+0 upgraded, 0 newly installed, 0 to remove and 34 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.32-5-mckinley ia64 (ia64)
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.6_4.6.4-2 gcc-4.6_4.6.4-2 libc6.1-dev_2.17-3 libstdc++6_4.7.2-5 libstdc++6-4.6-dev_4.6.4-2 linux-libc-dev_3.2.39-2
+Package versions: apt_0.9.7.8 base-files_7.1 base-passwd_3.5.26 bash_4.2+dfsg-0.1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.13-3.2 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2 dash_0.5.7-3 debconf_1.5.49 debfoster_2.7-1.2 debhelper_9.20130518 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-1 findutils_4.4.2-5 fo [...]
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Fri May 17 13:25:10 2013 UTC using DSA key ID C09FD35A
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-edger_3.2.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-edger in r-bioc-edger-3.2.3~dfsg
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg-1.debian.tar.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: source package r-bioc-edger
+dpkg-buildpackage: source version 3.2.3~dfsg-1
+ dpkg-source --before-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: host architecture ia64
+ fakeroot debian/rules clean
+test -x debian/rules
+dh_testroot
+dh_clean
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build-arch
+test -x debian/rules
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+ fakeroot debian/rules binary-arch
+test -x debian/rules
+dh_testroot
+dh_prep
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+dh_installdirs -A
+ install -d debian/r-bioc-edger
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-edger/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 3.0.1-1)" >> debian/r-bioc-edger.substvars
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-ia64-bR7MrL/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-ia64-bR7MrL/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'edgeR' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-ia64-bR7MrL/r-bioc-edger-3.2.3~dfsg/src'
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_exact_test_by_deviance.cpp -o R_exact_test_by_deviance.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_loess_by_col.cpp -o R_loess_by_col.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_cr_adjust.cpp -o R_cr_adjust.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_levenberg.cpp -o R_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_maximize_interpolant.cpp -o R_maximize_interpolant.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_one_group.cpp -o R_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_simple_good_turing.cpp -o R_simple_good_turing.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c core/adj_coxreid.cpp -o core/adj_coxreid.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c core/glm_levenberg.cpp -o core/glm_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c core/glm_one_group.cpp -o core/glm_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c core/interpolator.cpp -o core/interpolator.o
+gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c core/fmm_spline.c -o core/fmm_spline.o
+g++ -shared -o edgeR.so R_exact_test_by_deviance.o R_loess_by_col.o R_cr_adjust.o R_levenberg.o R_maximize_interpolant.o R_one_group.o R_simple_good_turing.o core/adj_coxreid.o core/glm_levenberg.o core/glm_one_group.o core/interpolator.o core/fmm_spline.o -llapack -lblas -lgfortran -lm -lunwind -lquadmath -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-ia64-bR7MrL/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-ia64-bR7MrL/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-ia64-bR7MrL/r-bioc-edger-3.2.3~dfsg/src'
+installing to /build/buildd-r-bioc-edger_3.2.3~dfsg-1-ia64-bR7MrL/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs
+** R
+** data
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices
+** installing vignettes
+** testing if installed package can be loaded
+* DONE (edgeR)
+rm -vf /build/buildd-r-bioc-edger_3.2.3~dfsg-1-ia64-bR7MrL/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-ia64-bR7MrL/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/COPYING \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-ia64-bR7MrL/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-edger_3.2.3~dfsg-1-ia64-bR7MrL/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-ia64-bR7MrL/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides/r-bioc-edger; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-edger.substvars
+dh_installdirs -pr-bioc-edger
+chmod 644 debian/r-bioc-edger/usr/lib/R/site-library/edgeR/doc/*
+dh_installdocs -pr-bioc-edger
+ install -g 0 -o 0 -d debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-edger_3.2.3~dfsg-1-ia64-bR7MrL/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/doc/r-bioc-edger \;
+ cp -a debian/README.test debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ chown -R 0:0 debian/r-bioc-edger/usr/share/doc
+ chmod -R go=rX debian/r-bioc-edger/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-edger/usr/share/doc
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-edger/usr/share/doc/r-bioc-edger/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-edger/usr/share/doc/r-bioc-edger/copyright
+dh_installexamples -pr-bioc-edger
+dh_installman -pr-bioc-edger
+dh_installinfo -pr-bioc-edger
+dh_installmenu -pr-bioc-edger
+dh_installcron -pr-bioc-edger
+dh_installinit -pr-bioc-edger
+dh_installdebconf -pr-bioc-edger
+ install -o 0 -g 0 -d debian/r-bioc-edger/DEBIAN
+dh_installemacsen -pr-bioc-edger
+dh_installcatalogs -pr-bioc-edger
+ grep -s -v '^misc:Depends=' debian/r-bioc-edger.substvars > debian/r-bioc-edger.substvars.new || true
+ mv debian/r-bioc-edger.substvars.new debian/r-bioc-edger.substvars
+dh_installpam -pr-bioc-edger
+dh_installlogrotate -pr-bioc-edger
+dh_installlogcheck -pr-bioc-edger
+dh_installchangelogs -pr-bioc-edger
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-edger/usr/share/doc/r-bioc-edger/changelog.Debian
+dh_installudev -pr-bioc-edger
+dh_lintian -pr-bioc-edger
+dh_bugfiles -pr-bioc-edger
+dh_install -pr-bioc-edger
+dh_link -pr-bioc-edger
+dh_installmime -pr-bioc-edger
+dh_installgsettings -pr-bioc-edger
+dh_strip -pr-bioc-edger
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dh_compress -pr-bioc-edger
+ cd debian/r-bioc-edger
+ chmod a-x usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/changelog.Debian
+ gzip -9nf usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/changelog.Debian
+ cd '/build/buildd-r-bioc-edger_3.2.3~dfsg-1-ia64-bR7MrL/r-bioc-edger-3.2.3~dfsg'
+dh_fixperms -pr-bioc-edger
+ find debian/r-bioc-edger -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-edger ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-edger/usr/share/doc -type f ! -regex 'debian/r-bioc-edger/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-edger/usr/share/man debian/r-bioc-edger/usr/man/ debian/r-bioc-edger/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/lib/perl5 debian/r-bioc-edger/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-edger/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
+dh_makeshlibs -pr-bioc-edger
+ rm -f debian/r-bioc-edger/DEBIAN/shlibs
+dh_installdeb -pr-bioc-edger
+dh_perl -pr-bioc-edger
+dh_shlibdeps -pr-bioc-edger
+ dpkg-shlibdeps -Tdebian/r-bioc-edger.substvars debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so was not linked against libquadmath.so.0 (it uses none of the library's symbols)
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so was not linked against libgfortran.so.3 (it uses none of the library's symbols)
+dh_gencontrol -pr-bioc-edger
+ echo misc:Depends= >> debian/r-bioc-edger.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-edger.substvars -Pdebian/r-bioc-edger
+ chmod 644 debian/r-bioc-edger/DEBIAN/control
+ chown 0:0 debian/r-bioc-edger/DEBIAN/control
+dh_md5sums -pr-bioc-edger
+ (cd debian/r-bioc-edger >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-edger/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-edger/DEBIAN/md5sums
+dh_builddeb -pr-bioc-edger -- -Z xz
+ dpkg-deb -Z xz --build debian/r-bioc-edger ..
+dpkg-deb: building package `r-bioc-edger' in `../r-bioc-edger_3.2.3~dfsg-1_ia64.deb'.
+ dpkg-genchanges -B -mia64 Build Daemon (mundy) <buildd_ia64-mundy at buildd.debian.org> >../r-bioc-edger_3.2.3~dfsg-1_ia64.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20130519-2131
+
+r-bioc-edger_3.2.3~dfsg-1_ia64.changes:
+Format: 1.8
+Date: Fri, 17 May 2013 14:36:51 +0200
+Source: r-bioc-edger
+Binary: r-bioc-edger
+Architecture: ia64
+Version: 3.2.3~dfsg-1
+Distribution: sid
+Urgency: low
+Maintainer: ia64 Build Daemon (mundy) <buildd_ia64-mundy at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
+Description:
+ r-bioc-edger - Empirical analysis of digital gene expression data in R
+Changes:
+ r-bioc-edger (3.2.3~dfsg-1) unstable; urgency=low
+ .
+ [ Charles Plessy ]
+ 74f1a5f Imported Upstream version 2.6.10~dfsg
+ d2d70ab Corrected VCS URLs.
+ 44c9d4e Regression tests for autopkgtest.
+ .
+ [ Andreas Tille ]
+ * Imported new upstream version 3.2.3~dfsg
+ * debian/control
+ - Added myself as Uploader
+ - Add ${shlibs:Depends} to ensure dependency from libc
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - normalised format
+ - Removed unneeded Pre-Depends: dpkg (>= 1.15.6)
+ - Removed versioned dependency of r-base-dev
+ - Package is "Architecture: any" (rather than all)
+ * debian/source/format: Add explicit source format specification
+ * debian/copyright:
+ - Update Source location
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - Add years to Copyright field
+ * debian/upstream: inst/CITATION asks for citing this more recent
+ paper that is now on top of debian/upstream
+ * debian/rules: remove executable flag from installed documentation
+Checksums-Sha1:
+ d71a519c822e30ca98ddaf6f607cf4c0faac813b 1371670 r-bioc-edger_3.2.3~dfsg-1_ia64.deb
+Checksums-Sha256:
+ a8404fa8fa437add6b4b0dd6303c6eddc5a599e93ee1b3506122d2369d132725 1371670 r-bioc-edger_3.2.3~dfsg-1_ia64.deb
+Files:
+ cda84bb4b04ec1be8deba427e4701dc5 1371670 gnu-r optional r-bioc-edger_3.2.3~dfsg-1_ia64.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-edger_3.2.3~dfsg-1_ia64.deb
+──────────────────────────────────
+
+ new debian package, version 2.0.
+ size 1371670 bytes: control archive= 1877 bytes.
+ 993 bytes, 17 lines control
+ 2932 bytes, 38 lines md5sums
+ Package: r-bioc-edger
+ Version: 3.2.3~dfsg-1
+ Architecture: ia64
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 2521
+ Depends: r-base-core (>= 3.0.1-1), r-bioc-limma, libblas3 | libblas.so.3 | libatlas3-base, libc6.1 (>= 2.2), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3), liblapack3 | liblapack.so.3 | libatlas3-base, libquadmath0 (>= 4.6), libstdc++6 (>= 4.2.1), libunwind7
+ Suggests: r-cran-mass
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
+ Description: Empirical analysis of digital gene expression data in R
+ Bioconductor package for differential expression analysis of whole
+ transcriptome sequencing (RNA-seq) and digital gene expression
+ profiles with biological replication. It uses empirical Bayes
+ estimation and exact tests based on the negative binomial
+ distribution. It is also useful for differential signal analysis with
+ other types of genome-scale count data.
+
+drwxr-xr-x root/root 0 2013-05-19 21:31 ./
+drwxr-xr-x root/root 0 2013-05-19 21:31 ./usr/
+drwxr-xr-x root/root 0 2013-05-19 21:31 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-19 21:31 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-19 21:31 ./usr/share/doc/r-bioc-edger/
+-rw-r--r-- root/root 274 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.Debian
+-rw-r--r-- root/root 816 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.test
+drwxr-xr-x root/root 0 2013-05-19 21:31 ./usr/share/doc/r-bioc-edger/tests/
+-rw-r--r-- root/root 5706 2013-04-08 00:02 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save.gz
+-rw-r--r-- root/root 1392 2013-04-03 22:17 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R.gz
+-rw-r--r-- root/root 1404 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/copyright
+-rw-r--r-- root/root 1384 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/changelog.Debian.gz
+drwxr-xr-x root/root 0 2013-05-19 21:30 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-19 21:30 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-19 21:31 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/
+-rw-r--r-- root/root 6834 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/INDEX
+drwxr-xr-x root/root 0 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/doc/
+-rw-r--r-- root/root 49354 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/doc/edgeR.pdf
+-rw-r--r-- root/root 691 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/doc/index.html
+-rw-r--r-- root/root 879697 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/doc/edgeRUsersGuide.pdf
+-rw-r--r-- root/root 1826 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/doc/edgeR.Rnw
+-rw-r--r-- root/root 2057 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/CITATION
+drwxr-xr-x root/root 0 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/html/
+-rw-r--r-- root/root 22781 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/html/00Index.html
+-rw-r--r-- root/root 1179 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/html/R.css
+-rw-r--r-- root/root 13746 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/NEWS.Rd
+drwxr-xr-x root/root 0 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/Meta/
+-rw-r--r-- root/root 3475 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/Meta/hsearch.rds
+-rw-r--r-- root/root 3639 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/Meta/Rd.rds
+-rw-r--r-- root/root 1640 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/Meta/links.rds
+-rw-r--r-- root/root 161 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/Meta/data.rds
+-rw-r--r-- root/root 228 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/Meta/vignette.rds
+-rw-r--r-- root/root 995 2013-05-19 21:30 ./usr/lib/R/site-library/edgeR/Meta/package.rds
+-rw-r--r-- root/root 368 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/Meta/nsInfo.rds
+-rw-r--r-- root/root 1111 2013-05-19 21:30 ./usr/lib/R/site-library/edgeR/DESCRIPTION
+drwxr-xr-x root/root 0 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/data/
+-rw-r--r-- root/root 318545 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/data/Tu102.txt
+-rw-r--r-- root/root 19 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/data/datalist
+-rw-r--r-- root/root 248500 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/data/NC1.txt
+-rw-r--r-- root/root 263571 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/data/Tu98.txt
+-rw-r--r-- root/root 228426 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/data/NC2.txt
+drwxr-xr-x root/root 0 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/R/
+-rw-r--r-- root/root 1056 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/R/edgeR
+-rw-r--r-- root/root 116076 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/R/edgeR.rdb
+-rw-r--r-- root/root 2294 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/R/edgeR.rdx
+drwxr-xr-x root/root 0 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/help/
+-rw-r--r-- root/root 3776 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/help/AnIndex
+-rw-r--r-- root/root 230628 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/help/edgeR.rdb
+-rw-r--r-- root/root 805 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/help/paths.rds
+-rw-r--r-- root/root 1757 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/help/edgeR.rdx
+-rw-r--r-- root/root 1342 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/help/aliases.rds
+drwxr-xr-x root/root 0 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/libs/
+-rw-r--r-- root/root 88616 2013-05-19 21:31 ./usr/lib/R/site-library/edgeR/libs/edgeR.so
+-rw-r--r-- root/root 804 2013-05-19 21:30 ./usr/lib/R/site-library/edgeR/NAMESPACE
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-ia64-sbuild-5ba512b9-dd90-4142-8bd2-37c04f9bc24c/build/buildd-r-bioc-edger_3.2.3~dfsg-1-ia64-bR7MrL
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: ia64
+Build-Space: 6916
+Build-Time: 59
+Distribution: sid
+Install-Time: 267
+Job: r-bioc-edger_3.2.3~dfsg-1
+Package: r-bioc-edger
+Package-Time: 379
+Source-Version: 3.2.3~dfsg-1
+Space: 6916
+Status: successful
+Version: 3.2.3~dfsg-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20130519-2131
+Build needed 00:06:19, 6916k disc space
+Signature with key 'EF00ABB2' requested:
+
diff --git a/info b/info
new file mode 100644
index 0000000..e567c8b
--- /dev/null
+++ b/info
@@ -0,0 +1,14 @@
+powerpc~1368798674~sid~successful
+kfreebsd-i386~1368799152~sid~successful
+kfreebsd-amd64~1368800109~sid~successful
+i386~1368800605~sid~successful
+armhf~1368803780~sid~successful
+hurd-i386~1368804475~sid~failed
+sparc~1368808670~sid~successful
+hurd-i386~1368808890~sid~successful
+s390x~1368816896~sid~successful
+s390~1368843878~sid~successful
+mips~1368890820~sid~successful
+mipsel~1368937130~sid~successful
+ia64~1368999114~sid~successful
+armel~1369151019~sid~successful
diff --git a/kfreebsd-amd64.log b/kfreebsd-amd64.log
new file mode 100644
index 0000000..18472ee
--- /dev/null
+++ b/kfreebsd-amd64.log
@@ -0,0 +1,1032 @@
+From buildd at fasch.debian.org Fri May 17 14:15:08 2013
+Return-path: <buildd at fasch.debian.org>
+Received: from muffat.debian.org ([206.12.19.146])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=muffat.debian.org, EMAIL=hostmaster at muffat.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:DHE_RSA_AES_128_CBC_SHA1:16)
+ (Exim 4.72) (envelope-from <buildd at fasch.debian.org>)
+ id 1UdLR6-0007gf-5U
+ for logs at buildd.debian.org; Fri, 17 May 2013 14:15:08 +0000
+Received: from fasch.debian.org ([194.177.211.201])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=fasch.debian.org, EMAIL=hostmaster at fasch.debian.org (verified)
+ by muffat.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:256)
+ (Exim 4.80) (envelope-from <buildd at fasch.debian.org>)
+ id 1UdLR3-0004FR-9R; Fri, 17 May 2013 14:15:05 +0000
+Received: from buildd by fasch.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at fasch.debian.org>)
+ id 1UdLR0-0000hX-Rf; Fri, 17 May 2013 14:15:02 +0000
+Message-Id: <E1UdLR0-0000hX-Rf at fasch.debian.org>
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
+Date: Fri, 17 May 2013 14:15:02 +0000
+From: buildd on fasch <buildd at fasch.debian.org>
+To: logs at buildd.debian.org,christoph at debian.org
+Subject: Log for successful build of r-bioc-edger_3.2.3~dfsg-1 on
+ kfreebsd-amd64 (dist=sid)
+Key-Id: 4D96B7CE
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on fasch.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-edger 3.2.3~dfsg-1 (kfreebsd-amd64) 17 May 2013 14:12 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-edger
+Version: 3.2.3~dfsg-1
+Source Version: 3.2.3~dfsg-1
+Architecture: kfreebsd-amd64
+Get:1 http://ftp.gr.debian.org unstable Release.gpg [1571 B]
+Get:2 http://ftp.gr.debian.org unstable Release [203 kB]
+Get:3 http://ftp.gr.debian.org unstable/main Sources [6729 kB]
+Get:4 http://ftp.gr.debian.org unstable/contrib Sources [53.7 kB]
+Get:5 http://ftp.gr.debian.org unstable/non-free Sources [103 kB]
+Get:6 http://ftp.gr.debian.org unstable/main kfreebsd-amd64 Packages [5917 kB]
+Get:7 http://incoming.debian.org unstable Release.gpg [1571 B]
+Get:8 http://ftp.gr.debian.org unstable/contrib kfreebsd-amd64 Packages [36.7 kB]
+Get:9 http://incoming.debian.org buildd-unstable Release.gpg [1571 B]
+Get:10 http://incoming.debian.org unstable Release [203 kB]
+Get:11 http://incoming.debian.org buildd-unstable Release [109 kB]
+Get:12 http://incoming.debian.org unstable/main Sources [6729 kB]
+Get:13 http://incoming.debian.org unstable/contrib Sources [53.7 kB]
+Get:14 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:15 http://incoming.debian.org unstable/main kfreebsd-amd64 Packages [5917 kB]
+Get:16 http://incoming.debian.org unstable/contrib kfreebsd-amd64 Packages [36.7 kB]
+Get:17 http://incoming.debian.org buildd-unstable/main Sources [104 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib Sources [873 B]
+Get:19 http://incoming.debian.org buildd-unstable/non-free Sources [2683 B]
+Get:20 http://incoming.debian.org buildd-unstable/main kfreebsd-amd64 Packages [59.0 kB]
+Get:21 http://incoming.debian.org buildd-unstable/contrib kfreebsd-amd64 Packages [14 B]
+Fetched 26.4 MB in 19s (1387 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-edger' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/debian-med/r-bioc-edger.git
+Need to get 1218 kB of source archives.
+Get:1 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-bioc-edger 3.2.3~dfsg-1 (dsc) [1445 B]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-bioc-edger 3.2.3~dfsg-1 (tar) [1212 kB]
+Get:3 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-bioc-edger 3.2.3~dfsg-1 (diff) [4311 B]
+Fetched 1218 kB in 2s (420 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.6)
+fakeroot: already installed (1.18.4-2)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following package was automatically installed and is no longer required:
+ libprocps0
+Use 'apt-get autoremove' to remove it.
+0 upgraded, 0 newly installed, 0 to remove and 28 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following package was automatically installed and is no longer required:
+ libprocps0
+Use 'apt-get autoremove' to remove it.
+0 upgraded, 0 newly installed, 0 to remove and 28 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-edger build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, libc-bin, login, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev, r-bioc-limma
+Checking for already installed dependencies...
+base-files: already installed (7.2)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2+dfsg-1)
+bsdutils: already installed (1:2.20.1-5.3)
+coreutils: already installed (8.13-3.3)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1.1)
+findutils: already installed (4.4.2-5)
+freebsd-utils: already installed (9.0+ds1-11)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+libc-bin: already installed (2.13-38)
+login: already installed (1:4.1.5.1-1)
+ncurses-base: already installed (5.9-10)
+ncurses-bin: already installed (5.9-10)
+perl-base: already installed (5.14.2-21)
+sed: already installed (4.2.1-10)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-5)
+util-linux: already installed (2.20.1-5.3)
+libc6-dev: already installed (~*=PROVIDED=*=)
+gcc: already installed (4:4.7.2-1 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.7.2-1 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
+debhelper: missing
+Using default version 9.20130516
+cdbs: missing
+r-base-dev: missing
+r-bioc-limma: missing
+Checking for dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev r-bioc-limma
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages were automatically installed and are no longer required:
+ libmpc2 libprocps0
+Use 'apt-get autoremove' to remove them.
+The following extra packages will be installed:
+ cpp-4.7 file fontconfig fontconfig-config fonts-dejavu-core g++-4.7 gcc-4.7
+ gcc-4.7-base gcc-4.8-base gettext gettext-base gfortran gfortran-4.7
+ groff-base html2text intltool-debian libasprintf-dev libasprintf0c2
+ libblas-dev libblas3 libbz2-dev libc-dev-bin libc0.1 libc0.1-dev libcairo2
+ libcroco3 libdatrie1 libffi6 libfontconfig1 libfreetype6 libgcc-4.7-dev
+ libgcc1 libgettextpo-dev libgettextpo0 libgfortran-4.7-dev libgfortran3
+ libglib2.0-0 libgomp1 libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev
+ liblapack3 libmagic1 libmpc3 libncurses5 libncurses5-dev libncursesw5
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-dev libquadmath0 libreadline-dev libreadline6-dev
+ libsm6 libstdc++6 libstdc++6-4.7-dev libthai-data libthai0 libtiff5
+ libtinfo-dev libtinfo5 libunistring0 libx11-6 libx11-data libxau6
+ libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
+ libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf r-base-core tcl8.5
+ tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+Suggested packages:
+ devscripts gcc-4.7-locales dh-make g++-4.7-multilib gcc-4.7-doc
+ libstdc++6-4.7-dbg gcc-4.7-multilib libmudflap0-4.7-dev libgcc1-dbg
+ libgomp1-dbg libitm1-dbg libquadmath0-dbg libmudflap0-dbg libcloog-ppl0
+ libppl-c4 libppl9 libpwl5 gettext-doc gfortran-multilib gfortran-doc
+ gfortran-4.7-multilib gfortran-4.7-doc libgfortran3-dbg groff glibc-doc
+ ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp
+ ttf-arphic-gkai00mp ttf-arphic-bkai00mp libstdc++6-4.7-doc less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base
+ texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
+ texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
+ texlive-latex-extra texinfo texi2html tcl-tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev curl wget lynx-cur autopoint manpages-dev libglib2.0-data
+ shared-mime-info xml-core libmail-sendmail-perl r-recommended r-doc-html
+ xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ cdbs debhelper file fontconfig fontconfig-config fonts-dejavu-core gettext
+ gettext-base gfortran gfortran-4.7 groff-base html2text intltool-debian
+ libasprintf-dev libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2
+ libcroco3 libdatrie1 libffi6 libfontconfig1 libfreetype6 libgcc-4.7-dev
+ libgettextpo-dev libgettextpo0 libgfortran-4.7-dev libgfortran3 libglib2.0-0
+ libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1
+ libmpc3 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev
+ libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff5 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev r-bioc-limma tcl8.5 tk8.5 ttf-dejavu-core
+ ucf unzip x11-common xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.7 g++-4.7 gcc-4.7 gcc-4.7-base gcc-4.8-base libc-dev-bin libc0.1
+ libc0.1-dev libgcc1 libgomp1 libncurses5 libncursesw5 libquadmath0
+ libstdc++6 libstdc++6-4.7-dev libtinfo5 ncurses-bin
+17 upgraded, 82 newly installed, 0 to remove and 11 not upgraded.
+Need to get 89.4 MB of archives.
+After this operation, 128 MB of additional disk space will be used.
+Get:1 http://ftp.gr.debian.org/debian/ unstable/main libc0.1-dev kfreebsd-amd64 2.17-3 [2533 kB]
+Get:2 http://ftp.gr.debian.org/debian/ unstable/main libc-dev-bin kfreebsd-amd64 2.17-3 [233 kB]
+Get:3 http://ftp.gr.debian.org/debian/ unstable/main libgomp1 kfreebsd-amd64 4.8.0-7 [26.8 kB]
+Get:4 http://ftp.gr.debian.org/debian/ unstable/main libc0.1 kfreebsd-amd64 2.17-3 [4153 kB]
+Get:5 http://ftp.gr.debian.org/debian/ unstable/main gcc-4.8-base kfreebsd-amd64 4.8.0-7 [148 kB]
+Get:6 http://ftp.gr.debian.org/debian/ unstable/main libgcc1 kfreebsd-amd64 1:4.8.0-7 [43.3 kB]
+Get:7 http://ftp.gr.debian.org/debian/ unstable/main libquadmath0 kfreebsd-amd64 4.8.0-7 [139 kB]
+Get:8 http://ftp.gr.debian.org/debian/ unstable/main libstdc++6 kfreebsd-amd64 4.8.0-7 [336 kB]
+Get:9 http://ftp.gr.debian.org/debian/ unstable/main libncursesw5 kfreebsd-amd64 5.9+20130504-1 [141 kB]
+Get:10 http://ftp.gr.debian.org/debian/ unstable/main libtinfo5 kfreebsd-amd64 5.9+20130504-1 [296 kB]
+Get:11 http://ftp.gr.debian.org/debian/ unstable/main libncurses5 kfreebsd-amd64 5.9+20130504-1 [114 kB]
+Get:12 http://ftp.gr.debian.org/debian/ unstable/main ncurses-bin kfreebsd-amd64 5.9+20130504-1 [359 kB]
+Get:13 http://ftp.gr.debian.org/debian/ unstable/main libpipeline1 kfreebsd-amd64 1.2.3-1 [40.5 kB]
+Get:14 http://ftp.gr.debian.org/debian/ unstable/main groff-base kfreebsd-amd64 1.22.2-2 [743 kB]
+Get:15 http://incoming.debian.org/debian-buildd/ buildd-unstable/main libcroco3 kfreebsd-amd64 0.6.8-2 [134 kB]
+Get:16 http://ftp.gr.debian.org/debian/ unstable/main man-db kfreebsd-amd64 2.6.3-6 [893 kB]
+Get:17 http://ftp.gr.debian.org/debian/ unstable/main libasprintf0c2 kfreebsd-amd64 0.18.1.1-10 [27.2 kB]
+Get:18 http://ftp.gr.debian.org/debian/ unstable/main libmagic1 kfreebsd-amd64 1:5.14-1 [216 kB]
+Get:19 http://ftp.gr.debian.org/debian/ unstable/main libxml2 kfreebsd-amd64 2.8.0+dfsg1-7+nmu1 [914 kB]
+Get:20 http://ftp.gr.debian.org/debian/ unstable/main libfreetype6 kfreebsd-amd64 2.4.9-1.1 [451 kB]
+Get:21 http://ftp.gr.debian.org/debian/ unstable/main ucf all 3.0025+nmu3 [70.8 kB]
+Get:22 http://ftp.gr.debian.org/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
+Get:23 http://ftp.gr.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
+Get:24 http://ftp.gr.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:25 http://ftp.gr.debian.org/debian/ unstable/main libfontconfig1 kfreebsd-amd64 2.9.0-7.1 [300 kB]
+Get:26 http://ftp.gr.debian.org/debian/ unstable/main libpixman-1-0 kfreebsd-amd64 0.26.0-4 [427 kB]
+Get:27 http://ftp.gr.debian.org/debian/ unstable/main libxau6 kfreebsd-amd64 1:1.0.7-1 [18.8 kB]
+Get:28 http://ftp.gr.debian.org/debian/ unstable/main libxdmcp6 kfreebsd-amd64 1:1.1.1-1 [26.3 kB]
+Get:29 http://ftp.gr.debian.org/debian/ unstable/main libxcb1 kfreebsd-amd64 1.8.1-2 [50.1 kB]
+Get:30 http://ftp.gr.debian.org/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:31 http://ftp.gr.debian.org/debian/ unstable/main libx11-6 kfreebsd-amd64 2:1.5.0-1 [900 kB]
+Get:32 http://ftp.gr.debian.org/debian/ unstable/main libxcb-render0 kfreebsd-amd64 1.8.1-2 [18.6 kB]
+Get:33 http://ftp.gr.debian.org/debian/ unstable/main libxcb-shm0 kfreebsd-amd64 1.8.1-2 [10.3 kB]
+Get:34 http://ftp.gr.debian.org/debian/ unstable/main libxext6 kfreebsd-amd64 2:1.3.1-2 [55.3 kB]
+Get:35 http://ftp.gr.debian.org/debian/ unstable/main libxrender1 kfreebsd-amd64 1:0.9.7-1 [32.9 kB]
+Get:36 http://ftp.gr.debian.org/debian/ unstable/main libcairo2 kfreebsd-amd64 1.12.14-4 [1006 kB]
+Get:37 http://ftp.gr.debian.org/debian/ unstable/main libffi6 kfreebsd-amd64 3.0.13-4 [21.1 kB]
+Get:38 http://ftp.gr.debian.org/debian/ unstable/main libglib2.0-0 kfreebsd-amd64 2.36.1-2build1 [2048 kB]
+Get:39 http://ftp.gr.debian.org/debian/ unstable/main libdatrie1 kfreebsd-amd64 0.2.6-2 [30.3 kB]
+Get:40 http://ftp.gr.debian.org/debian/ unstable/main libunistring0 kfreebsd-amd64 0.9.3-5 [434 kB]
+Get:41 http://ftp.gr.debian.org/debian/ unstable/main libgettextpo0 kfreebsd-amd64 0.18.1.1-10 [145 kB]
+Get:42 http://ftp.gr.debian.org/debian/ unstable/main libgfortran3 kfreebsd-amd64 4.8.0-7 [349 kB]
+Get:43 http://ftp.gr.debian.org/debian/ unstable/main x11-common all 1:7.7+3 [284 kB]
+Get:44 http://ftp.gr.debian.org/debian/ unstable/main libice6 kfreebsd-amd64 2:1.0.8-2 [63.0 kB]
+Get:45 http://ftp.gr.debian.org/debian/ unstable/main libjpeg8 kfreebsd-amd64 8d-1 [134 kB]
+Get:46 http://ftp.gr.debian.org/debian/ unstable/main libthai-data all 0.1.19-2 [156 kB]
+Get:47 http://ftp.gr.debian.org/debian/ unstable/main libthai0 kfreebsd-amd64 0.1.19-2 [43.3 kB]
+Get:48 http://ftp.gr.debian.org/debian/ unstable/main libxft2 kfreebsd-amd64 2.3.1-1 [61.4 kB]
+Get:49 http://ftp.gr.debian.org/debian/ unstable/main fontconfig kfreebsd-amd64 2.9.0-7.1 [349 kB]
+Get:50 http://ftp.gr.debian.org/debian/ unstable/main libpango1.0-0 kfreebsd-amd64 1.30.0-1 [462 kB]
+Get:51 http://ftp.gr.debian.org/debian/ unstable/main libpaper1 kfreebsd-amd64 1.1.24+nmu2 [22.1 kB]
+Get:52 http://ftp.gr.debian.org/debian/ unstable/main libpcrecpp0 kfreebsd-amd64 1:8.31-2 [128 kB]
+Get:53 http://ftp.gr.debian.org/debian/ unstable/main libsm6 kfreebsd-amd64 2:1.2.1-2 [34.2 kB]
+Get:54 http://ftp.gr.debian.org/debian/ unstable/main libjbig0 kfreebsd-amd64 2.0-2 [32.0 kB]
+Get:55 http://ftp.gr.debian.org/debian/ unstable/main libtiff5 kfreebsd-amd64 4.0.2-6 [234 kB]
+Get:56 http://ftp.gr.debian.org/debian/ unstable/main libxss1 kfreebsd-amd64 1:1.2.2-1 [17.7 kB]
+Get:57 http://ftp.gr.debian.org/debian/ unstable/main libxt6 kfreebsd-amd64 1:1.1.3-1 [211 kB]
+Get:58 http://ftp.gr.debian.org/debian/ unstable/main libmpc3 kfreebsd-amd64 1.0.1-1 [45.8 kB]
+Get:59 http://ftp.gr.debian.org/debian/ unstable/main libgcc-4.7-dev kfreebsd-amd64 4.7.3-4 [301 kB]
+Get:60 http://ftp.gr.debian.org/debian/ unstable/main g++-4.7 kfreebsd-amd64 4.7.3-4 [5752 kB]
+Get:61 http://ftp.gr.debian.org/debian/ unstable/main libstdc++6-4.7-dev kfreebsd-amd64 4.7.3-4 [1647 kB]
+Get:62 http://ftp.gr.debian.org/debian/ unstable/main gcc-4.7 kfreebsd-amd64 4.7.3-4 [5689 kB]
+Get:63 http://ftp.gr.debian.org/debian/ unstable/main cpp-4.7 kfreebsd-amd64 4.7.3-4 [5286 kB]
+Get:64 http://ftp.gr.debian.org/debian/ unstable/main gcc-4.7-base kfreebsd-amd64 4.7.3-4 [149 kB]
+Get:65 http://ftp.gr.debian.org/debian/ unstable/main file kfreebsd-amd64 1:5.14-1 [54.1 kB]
+Get:66 http://ftp.gr.debian.org/debian/ unstable/main gettext-base kfreebsd-amd64 0.18.1.1-10 [153 kB]
+Get:67 http://ftp.gr.debian.org/debian/ unstable/main cdbs all 0.4.121 [80.5 kB]
+Get:68 http://ftp.gr.debian.org/debian/ unstable/main html2text kfreebsd-amd64 1.3.2a-15 [104 kB]
+Get:69 http://ftp.gr.debian.org/debian/ unstable/main libasprintf-dev kfreebsd-amd64 0.18.1.1-10 [27.0 kB]
+Get:70 http://ftp.gr.debian.org/debian/ unstable/main libgettextpo-dev kfreebsd-amd64 0.18.1.1-10 [184 kB]
+Get:71 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-bioc-limma kfreebsd-amd64 3.16.3~dfsg-1 [1619 kB]
+Get:72 http://ftp.gr.debian.org/debian/ unstable/main gettext kfreebsd-amd64 0.18.1.1-10 [1805 kB]
+Get:73 http://ftp.gr.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:74 http://ftp.gr.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:75 http://ftp.gr.debian.org/debian/ unstable/main debhelper all 9.20130516 [708 kB]
+Get:76 http://ftp.gr.debian.org/debian/ unstable/main libgfortran-4.7-dev kfreebsd-amd64 4.7.3-4 [439 kB]
+Get:77 http://ftp.gr.debian.org/debian/ unstable/main gfortran-4.7 kfreebsd-amd64 4.7.3-4 [5611 kB]
+Get:78 http://ftp.gr.debian.org/debian/ unstable/main gfortran kfreebsd-amd64 4:4.7.2-1 [1130 B]
+Get:79 http://ftp.gr.debian.org/debian/ unstable/main libblas3 kfreebsd-amd64 1.2.20110419-5 [293 kB]
+Get:80 http://ftp.gr.debian.org/debian/ unstable/main libblas-dev kfreebsd-amd64 1.2.20110419-5 [313 kB]
+Get:81 http://ftp.gr.debian.org/debian/ unstable/main libbz2-dev kfreebsd-amd64 1.0.6-4 [32.8 kB]
+Get:82 http://ftp.gr.debian.org/debian/ unstable/main libjpeg8-dev kfreebsd-amd64 8d-1 [240 kB]
+Get:83 http://ftp.gr.debian.org/debian/ unstable/main liblapack3 kfreebsd-amd64 3.4.2+dfsg-1 [5087 kB]
+Get:84 http://ftp.gr.debian.org/debian/ unstable/main liblapack-dev kfreebsd-amd64 3.4.2+dfsg-1 [5602 kB]
+Get:85 http://ftp.gr.debian.org/debian/ unstable/main libtinfo-dev kfreebsd-amd64 5.9+20130504-1 [108 kB]
+Get:86 http://ftp.gr.debian.org/debian/ unstable/main libncurses5-dev kfreebsd-amd64 5.9+20130504-1 [222 kB]
+Get:87 http://ftp.gr.debian.org/debian/ unstable/main libpaper-utils kfreebsd-amd64 1.1.24+nmu2 [18.4 kB]
+Get:88 http://ftp.gr.debian.org/debian/ unstable/main libpcre3-dev kfreebsd-amd64 1:8.31-2 [356 kB]
+Get:89 http://ftp.gr.debian.org/debian/ unstable/main zlib1g-dev kfreebsd-amd64 1:1.2.8.dfsg-1 [217 kB]
+Get:90 http://ftp.gr.debian.org/debian/ unstable/main libpng12-dev kfreebsd-amd64 1.2.49-4 [267 kB]
+Get:91 http://ftp.gr.debian.org/debian/ unstable/main libreadline6-dev kfreebsd-amd64 6.2+dfsg-0.1 [193 kB]
+Get:92 http://ftp.gr.debian.org/debian/ unstable/main libreadline-dev kfreebsd-amd64 6.2+dfsg-0.1 [898 B]
+Get:93 http://ftp.gr.debian.org/debian/ unstable/main zip kfreebsd-amd64 3.0-7 [335 kB]
+Get:94 http://ftp.gr.debian.org/debian/ unstable/main unzip kfreebsd-amd64 6.0-9 [194 kB]
+Get:95 http://ftp.gr.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:96 http://ftp.gr.debian.org/debian/ unstable/main tcl8.5 kfreebsd-amd64 8.5.11-2 [1627 kB]
+Get:97 http://ftp.gr.debian.org/debian/ unstable/main tk8.5 kfreebsd-amd64 8.5.11-2 [1189 kB]
+Get:98 http://ftp.gr.debian.org/debian/ unstable/main r-base-core kfreebsd-amd64 3.0.1~20130512-1 [21.5 MB]
+Get:99 http://ftp.gr.debian.org/debian/ unstable/main r-base-dev all 3.0.1~20130512-1 [3910 B]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 89.4 MB in 3s (26.0 MB/s)
+(Reading database ... 11559 files and directories currently installed.)
+Preparing to replace libc0.1-dev:kfreebsd-amd64 2.13-38 (using .../libc0.1-dev_2.17-3_kfreebsd-amd64.deb) ...
+Unpacking replacement libc0.1-dev:kfreebsd-amd64 ...
+Preparing to replace libc-dev-bin 2.13-38 (using .../libc-dev-bin_2.17-3_kfreebsd-amd64.deb) ...
+Unpacking replacement libc-dev-bin ...
+Preparing to replace libgomp1:kfreebsd-amd64 4.8.0-6 (using .../libgomp1_4.8.0-7_kfreebsd-amd64.deb) ...
+Unpacking replacement libgomp1:kfreebsd-amd64 ...
+Preparing to replace libc0.1:kfreebsd-amd64 2.13-38 (using .../libc0.1_2.17-3_kfreebsd-amd64.deb) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Unpacking replacement libc0.1:kfreebsd-amd64 ...
+Setting up libc0.1:kfreebsd-amd64 (2.17-3) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Nothing to restart.
+(Reading database ... 11572 files and directories currently installed.)
+Preparing to replace gcc-4.8-base:kfreebsd-amd64 4.8.0-6 (using .../gcc-4.8-base_4.8.0-7_kfreebsd-amd64.deb) ...
+Unpacking replacement gcc-4.8-base:kfreebsd-amd64 ...
+Setting up gcc-4.8-base:kfreebsd-amd64 (4.8.0-7) ...
+(Reading database ... 11572 files and directories currently installed.)
+Preparing to replace libgcc1:kfreebsd-amd64 1:4.8.0-6 (using .../libgcc1_1%3a4.8.0-7_kfreebsd-amd64.deb) ...
+Unpacking replacement libgcc1:kfreebsd-amd64 ...
+Setting up libgcc1:kfreebsd-amd64 (1:4.8.0-7) ...
+(Reading database ... 11572 files and directories currently installed.)
+Preparing to replace libquadmath0:kfreebsd-amd64 4.8.0-6 (using .../libquadmath0_4.8.0-7_kfreebsd-amd64.deb) ...
+Unpacking replacement libquadmath0:kfreebsd-amd64 ...
+Preparing to replace libstdc++6:kfreebsd-amd64 4.8.0-6 (using .../libstdc++6_4.8.0-7_kfreebsd-amd64.deb) ...
+Unpacking replacement libstdc++6:kfreebsd-amd64 ...
+Setting up libstdc++6:kfreebsd-amd64 (4.8.0-7) ...
+(Reading database ... 11572 files and directories currently installed.)
+Preparing to replace libncursesw5:kfreebsd-amd64 5.9-10 (using .../libncursesw5_5.9+20130504-1_kfreebsd-amd64.deb) ...
+Unpacking replacement libncursesw5:kfreebsd-amd64 ...
+Preparing to replace libtinfo5:kfreebsd-amd64 5.9-10 (using .../libtinfo5_5.9+20130504-1_kfreebsd-amd64.deb) ...
+Unpacking replacement libtinfo5:kfreebsd-amd64 ...
+Setting up libtinfo5:kfreebsd-amd64 (5.9+20130504-1) ...
+(Reading database ... 11572 files and directories currently installed.)
+Preparing to replace libncurses5:kfreebsd-amd64 5.9-10 (using .../libncurses5_5.9+20130504-1_kfreebsd-amd64.deb) ...
+Unpacking replacement libncurses5:kfreebsd-amd64 ...
+Setting up libncurses5:kfreebsd-amd64 (5.9+20130504-1) ...
+(Reading database ... 11572 files and directories currently installed.)
+Preparing to replace ncurses-bin 5.9-10 (using .../ncurses-bin_5.9+20130504-1_kfreebsd-amd64.deb) ...
+Unpacking replacement ncurses-bin ...
+Setting up ncurses-bin (5.9+20130504-1) ...
+Selecting previously unselected package libpipeline1:kfreebsd-amd64.
+(Reading database ... 11570 files and directories currently installed.)
+Unpacking libpipeline1:kfreebsd-amd64 (from .../libpipeline1_1.2.3-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.22.2-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.3-6_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libasprintf0c2:kfreebsd-amd64.
+Unpacking libasprintf0c2:kfreebsd-amd64 (from .../libasprintf0c2_0.18.1.1-10_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libmagic1:kfreebsd-amd64.
+Unpacking libmagic1:kfreebsd-amd64 (from .../libmagic1_1%3a5.14-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libxml2:kfreebsd-amd64.
+Unpacking libxml2:kfreebsd-amd64 (from .../libxml2_2.8.0+dfsg1-7+nmu1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libfreetype6:kfreebsd-amd64.
+Unpacking libfreetype6:kfreebsd-amd64 (from .../libfreetype6_2.4.9-1.1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ...
+Moving old data out of the way
+Selecting previously unselected package fonts-dejavu-core.
+Unpacking fonts-dejavu-core (from .../fonts-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ...
+Selecting previously unselected package libfontconfig1:kfreebsd-amd64.
+Unpacking libfontconfig1:kfreebsd-amd64 (from .../libfontconfig1_2.9.0-7.1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libpixman-1-0:kfreebsd-amd64.
+Unpacking libpixman-1-0:kfreebsd-amd64 (from .../libpixman-1-0_0.26.0-4_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libxau6:kfreebsd-amd64.
+Unpacking libxau6:kfreebsd-amd64 (from .../libxau6_1%3a1.0.7-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libxdmcp6:kfreebsd-amd64.
+Unpacking libxdmcp6:kfreebsd-amd64 (from .../libxdmcp6_1%3a1.1.1-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libxcb1:kfreebsd-amd64.
+Unpacking libxcb1:kfreebsd-amd64 (from .../libxcb1_1.8.1-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ...
+Selecting previously unselected package libx11-6:kfreebsd-amd64.
+Unpacking libx11-6:kfreebsd-amd64 (from .../libx11-6_2%3a1.5.0-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libxcb-render0:kfreebsd-amd64.
+Unpacking libxcb-render0:kfreebsd-amd64 (from .../libxcb-render0_1.8.1-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libxcb-shm0:kfreebsd-amd64.
+Unpacking libxcb-shm0:kfreebsd-amd64 (from .../libxcb-shm0_1.8.1-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libxext6:kfreebsd-amd64.
+Unpacking libxext6:kfreebsd-amd64 (from .../libxext6_2%3a1.3.1-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libxrender1:kfreebsd-amd64.
+Unpacking libxrender1:kfreebsd-amd64 (from .../libxrender1_1%3a0.9.7-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libcairo2:kfreebsd-amd64.
+Unpacking libcairo2:kfreebsd-amd64 (from .../libcairo2_1.12.14-4_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libffi6:kfreebsd-amd64.
+Unpacking libffi6:kfreebsd-amd64 (from .../libffi6_3.0.13-4_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libglib2.0-0:kfreebsd-amd64.
+Unpacking libglib2.0-0:kfreebsd-amd64 (from .../libglib2.0-0_2.36.1-2build1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libcroco3:kfreebsd-amd64.
+Unpacking libcroco3:kfreebsd-amd64 (from .../libcroco3_0.6.8-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libdatrie1:kfreebsd-amd64.
+Unpacking libdatrie1:kfreebsd-amd64 (from .../libdatrie1_0.2.6-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libunistring0:kfreebsd-amd64.
+Unpacking libunistring0:kfreebsd-amd64 (from .../libunistring0_0.9.3-5_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libgettextpo0:kfreebsd-amd64.
+Unpacking libgettextpo0:kfreebsd-amd64 (from .../libgettextpo0_0.18.1.1-10_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libgfortran3:kfreebsd-amd64.
+Unpacking libgfortran3:kfreebsd-amd64 (from .../libgfortran3_4.8.0-7_kfreebsd-amd64.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.7+3_all.deb) ...
+Selecting previously unselected package libice6:kfreebsd-amd64.
+Unpacking libice6:kfreebsd-amd64 (from .../libice6_2%3a1.0.8-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libjpeg8:kfreebsd-amd64.
+Unpacking libjpeg8:kfreebsd-amd64 (from .../libjpeg8_8d-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.19-2_all.deb) ...
+Selecting previously unselected package libthai0:kfreebsd-amd64.
+Unpacking libthai0:kfreebsd-amd64 (from .../libthai0_0.1.19-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libxft2:kfreebsd-amd64.
+Unpacking libxft2:kfreebsd-amd64 (from .../libxft2_2.3.1-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libpango1.0-0:kfreebsd-amd64.
+Unpacking libpango1.0-0:kfreebsd-amd64 (from .../libpango1.0-0_1.30.0-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libpaper1:kfreebsd-amd64.
+Unpacking libpaper1:kfreebsd-amd64 (from .../libpaper1_1.1.24+nmu2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libpcrecpp0:kfreebsd-amd64.
+Unpacking libpcrecpp0:kfreebsd-amd64 (from .../libpcrecpp0_1%3a8.31-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libsm6:kfreebsd-amd64.
+Unpacking libsm6:kfreebsd-amd64 (from .../libsm6_2%3a1.2.1-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libjbig0:kfreebsd-amd64.
+Unpacking libjbig0:kfreebsd-amd64 (from .../libjbig0_2.0-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libtiff5:kfreebsd-amd64.
+Unpacking libtiff5:kfreebsd-amd64 (from .../libtiff5_4.0.2-6_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libxss1:kfreebsd-amd64.
+Unpacking libxss1:kfreebsd-amd64 (from .../libxss1_1%3a1.2.2-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libxt6:kfreebsd-amd64.
+Unpacking libxt6:kfreebsd-amd64 (from .../libxt6_1%3a1.1.3-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libmpc3:kfreebsd-amd64.
+Unpacking libmpc3:kfreebsd-amd64 (from .../libmpc3_1.0.1-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libgcc-4.7-dev:kfreebsd-amd64.
+Unpacking libgcc-4.7-dev:kfreebsd-amd64 (from .../libgcc-4.7-dev_4.7.3-4_kfreebsd-amd64.deb) ...
+Replacing files in old package gcc-4.7 ...
+Preparing to replace g++-4.7 4.7.2-5 (using .../g++-4.7_4.7.3-4_kfreebsd-amd64.deb) ...
+Unpacking replacement g++-4.7 ...
+Preparing to replace libstdc++6-4.7-dev 4.7.2-5 (using .../libstdc++6-4.7-dev_4.7.3-4_kfreebsd-amd64.deb) ...
+Unpacking replacement libstdc++6-4.7-dev:kfreebsd-amd64 ...
+Preparing to replace gcc-4.7 4.7.2-5 (using .../gcc-4.7_4.7.3-4_kfreebsd-amd64.deb) ...
+Unpacking replacement gcc-4.7 ...
+Preparing to replace cpp-4.7 4.7.2-5 (using .../cpp-4.7_4.7.3-4_kfreebsd-amd64.deb) ...
+Unpacking replacement cpp-4.7 ...
+Preparing to replace gcc-4.7-base:kfreebsd-amd64 4.7.2-5 (using .../gcc-4.7-base_4.7.3-4_kfreebsd-amd64.deb) ...
+Unpacking replacement gcc-4.7-base:kfreebsd-amd64 ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_1%3a5.14-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_kfreebsd-amd64.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
+Selecting previously unselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libasprintf-dev:kfreebsd-amd64.
+Unpacking libasprintf-dev:kfreebsd-amd64 (from .../libasprintf-dev_0.18.1.1-10_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libgettextpo-dev:kfreebsd-amd64.
+Unpacking libgettextpo-dev:kfreebsd-amd64 (from .../libgettextpo-dev_0.18.1.1-10_kfreebsd-amd64.deb) ...
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-10_kfreebsd-amd64.deb) ...
+Selecting previously unselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously unselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_9.20130516_all.deb) ...
+Selecting previously unselected package libgfortran-4.7-dev:kfreebsd-amd64.
+Unpacking libgfortran-4.7-dev:kfreebsd-amd64 (from .../libgfortran-4.7-dev_4.7.3-4_kfreebsd-amd64.deb) ...
+Selecting previously unselected package gfortran-4.7.
+Unpacking gfortran-4.7 (from .../gfortran-4.7_4.7.3-4_kfreebsd-amd64.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.7.2-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libblas3.
+Unpacking libblas3 (from .../libblas3_1.2.20110419-5_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libbz2-dev:kfreebsd-amd64.
+Unpacking libbz2-dev:kfreebsd-amd64 (from .../libbz2-dev_1.0.6-4_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libjpeg8-dev:kfreebsd-amd64.
+Unpacking libjpeg8-dev:kfreebsd-amd64 (from .../libjpeg8-dev_8d-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package liblapack3.
+Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.4.2+dfsg-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libtinfo-dev:kfreebsd-amd64.
+Unpacking libtinfo-dev:kfreebsd-amd64 (from .../libtinfo-dev_5.9+20130504-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libncurses5-dev:kfreebsd-amd64.
+Unpacking libncurses5-dev:kfreebsd-amd64 (from .../libncurses5-dev_5.9+20130504-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libpcre3-dev:kfreebsd-amd64.
+Unpacking libpcre3-dev:kfreebsd-amd64 (from .../libpcre3-dev_1%3a8.31-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package zlib1g-dev:kfreebsd-amd64.
+Unpacking zlib1g-dev:kfreebsd-amd64 (from .../zlib1g-dev_1%3a1.2.8.dfsg-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libreadline6-dev:kfreebsd-amd64.
+Unpacking libreadline6-dev:kfreebsd-amd64 (from .../libreadline6-dev_6.2+dfsg-0.1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libreadline-dev:kfreebsd-amd64.
+Unpacking libreadline-dev:kfreebsd-amd64 (from .../libreadline-dev_6.2+dfsg-0.1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package zip.
+Unpacking zip (from .../zip_3.0-7_kfreebsd-amd64.deb) ...
+Selecting previously unselected package unzip.
+Unpacking unzip (from .../unzip_6.0-9_kfreebsd-amd64.deb) ...
+Selecting previously unselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
+Selecting previously unselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_3.0.1~20130512-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_3.0.1~20130512-1_all.deb) ...
+Selecting previously unselected package r-bioc-limma.
+Unpacking r-bioc-limma (from .../r-bioc-limma_3.16.3~dfsg-1_kfreebsd-amd64.deb) ...
+Setting up libc-dev-bin (2.17-3) ...
+Setting up libc0.1-dev:kfreebsd-amd64 (2.17-3) ...
+Setting up libgomp1:kfreebsd-amd64 (4.8.0-7) ...
+Setting up libquadmath0:kfreebsd-amd64 (4.8.0-7) ...
+Setting up libncursesw5:kfreebsd-amd64 (5.9+20130504-1) ...
+Setting up libpipeline1:kfreebsd-amd64 (1.2.3-1) ...
+Setting up groff-base (1.22.2-2) ...
+Setting up man-db (2.6.3-6) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:kfreebsd-amd64 (0.18.1.1-10) ...
+Setting up libmagic1:kfreebsd-amd64 (1:5.14-1) ...
+Setting up libxml2:kfreebsd-amd64 (2.8.0+dfsg1-7+nmu1) ...
+Setting up libfreetype6:kfreebsd-amd64 (2.4.9-1.1) ...
+Setting up ucf (3.0025+nmu3) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:kfreebsd-amd64 (2.9.0-7.1) ...
+Setting up libpixman-1-0:kfreebsd-amd64 (0.26.0-4) ...
+Setting up libxau6:kfreebsd-amd64 (1:1.0.7-1) ...
+Setting up libxdmcp6:kfreebsd-amd64 (1:1.1.1-1) ...
+Setting up libxcb1:kfreebsd-amd64 (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:kfreebsd-amd64 (2:1.5.0-1) ...
+Setting up libxcb-render0:kfreebsd-amd64 (1.8.1-2) ...
+Setting up libxcb-shm0:kfreebsd-amd64 (1.8.1-2) ...
+Setting up libxext6:kfreebsd-amd64 (2:1.3.1-2) ...
+Setting up libxrender1:kfreebsd-amd64 (1:0.9.7-1) ...
+Setting up libcairo2:kfreebsd-amd64 (1.12.14-4) ...
+Setting up libffi6:kfreebsd-amd64 (3.0.13-4) ...
+Setting up libglib2.0-0:kfreebsd-amd64 (2.36.1-2build1) ...
+No schema files found: doing nothing.
+Setting up libcroco3:kfreebsd-amd64 (0.6.8-2) ...
+Setting up libdatrie1:kfreebsd-amd64 (0.2.6-2) ...
+Setting up libunistring0:kfreebsd-amd64 (0.9.3-5) ...
+Setting up libgettextpo0:kfreebsd-amd64 (0.18.1.1-10) ...
+Setting up libgfortran3:kfreebsd-amd64 (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6:kfreebsd-amd64 (2:1.0.8-2) ...
+Setting up libjpeg8:kfreebsd-amd64 (8d-1) ...
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:kfreebsd-amd64 (0.1.19-2) ...
+Setting up libxft2:kfreebsd-amd64 (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
+Regenerating fonts cache... done.
+Setting up libpango1.0-0:kfreebsd-amd64 (1.30.0-1) ...
+Setting up libpaper1:kfreebsd-amd64 (1.1.24+nmu2) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpcrecpp0:kfreebsd-amd64 (1:8.31-2) ...
+Setting up libsm6:kfreebsd-amd64 (2:1.2.1-2) ...
+Setting up libjbig0:kfreebsd-amd64 (2.0-2) ...
+Setting up libtiff5:kfreebsd-amd64 (4.0.2-6) ...
+Setting up libxss1:kfreebsd-amd64 (1:1.2.2-1) ...
+Setting up libxt6:kfreebsd-amd64 (1:1.1.3-1) ...
+Setting up libmpc3:kfreebsd-amd64 (1.0.1-1) ...
+Setting up gcc-4.7-base:kfreebsd-amd64 (4.7.3-4) ...
+Setting up libgcc-4.7-dev:kfreebsd-amd64 (4.7.3-4) ...
+Setting up cpp-4.7 (4.7.3-4) ...
+Setting up gcc-4.7 (4.7.3-4) ...
+Setting up libstdc++6-4.7-dev:kfreebsd-amd64 (4.7.3-4) ...
+Setting up g++-4.7 (4.7.3-4) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libasprintf-dev:kfreebsd-amd64 (0.18.1.1-10) ...
+Setting up libgettextpo-dev:kfreebsd-amd64 (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20130516) ...
+Setting up libgfortran-4.7-dev:kfreebsd-amd64 (4.7.3-4) ...
+Setting up gfortran-4.7 (4.7.3-4) ...
+Setting up gfortran (4:4.7.2-1) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:kfreebsd-amd64 (1.0.6-4) ...
+Setting up libjpeg8-dev:kfreebsd-amd64 (8d-1) ...
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:kfreebsd-amd64 (5.9+20130504-1) ...
+Setting up libncurses5-dev:kfreebsd-amd64 (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:kfreebsd-amd64 (1:8.31-2) ...
+Setting up zlib1g-dev:kfreebsd-amd64 (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:kfreebsd-amd64 (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:kfreebsd-amd64 (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.1~20130512-1) ...
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (3.0.1~20130512-1) ...
+Setting up r-bioc-limma (3.16.3~dfsg-1) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages were automatically installed and are no longer required:
+ libmpc2 libprocps0
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 11 not upgraded.
+Checking correctness of dependencies...
+Kernel: GNU/kFreeBSD 8.1-1-amd64 kfreebsd-amd64 (x86_64)
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.7_4.7.3-4 gcc-4.7_4.7.3-4 kfreebsd-kernel-headers_0.83 libc0.1-dev_2.17-3 libstdc++6_4.8.0-7 libstdc++6-4.7-dev_4.7.3-4
+Package versions: apt_0.9.7.8 base-files_7.2 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.13-3.3 cpp_4:4.7.2-1 cpp-4.7_4.7.3-4 dash_0.5.7-3 debconf_1.5.50 debfoster_2.7-1.2 debhelper_9.20130516 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-1 findutils_4.4.2-5 font [...]
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Fri May 17 13:25:10 2013 UTC using DSA key ID C09FD35A
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-edger_3.2.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-edger in r-bioc-edger-3.2.3~dfsg
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg-1.debian.tar.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: source package r-bioc-edger
+dpkg-buildpackage: source version 3.2.3~dfsg-1
+ dpkg-source --before-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: host architecture kfreebsd-amd64
+ fakeroot debian/rules clean
+test -x debian/rules
+dh_testroot
+dh_clean
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build-arch
+test -x debian/rules
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+ fakeroot debian/rules binary-arch
+test -x debian/rules
+dh_testroot
+dh_prep
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+dh_installdirs -A
+ install -d debian/r-bioc-edger
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-edger/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 3.0.1~20130512-1)" >> debian/r-bioc-edger.substvars
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-amd64-dZO5N2/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-amd64-dZO5N2/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'edgeR' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-amd64-dZO5N2/r-bioc-edger-3.2.3~dfsg/src'
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c R_exact_test_by_deviance.cpp -o R_exact_test_by_deviance.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c R_loess_by_col.cpp -o R_loess_by_col.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c R_cr_adjust.cpp -o R_cr_adjust.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c R_levenberg.cpp -o R_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c R_maximize_interpolant.cpp -o R_maximize_interpolant.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c R_one_group.cpp -o R_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c R_simple_good_turing.cpp -o R_simple_good_turing.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c core/adj_coxreid.cpp -o core/adj_coxreid.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c core/glm_levenberg.cpp -o core/glm_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c core/glm_one_group.cpp -o core/glm_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c core/interpolator.cpp -o core/interpolator.o
+gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c core/fmm_spline.c -o core/fmm_spline.o
+g++ -shared -o edgeR.so R_exact_test_by_deviance.o R_loess_by_col.o R_cr_adjust.o R_levenberg.o R_maximize_interpolant.o R_one_group.o R_simple_good_turing.o core/adj_coxreid.o core/glm_levenberg.o core/glm_one_group.o core/interpolator.o core/fmm_spline.o -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-amd64-dZO5N2/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-amd64-dZO5N2/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-amd64-dZO5N2/r-bioc-edger-3.2.3~dfsg/src'
+installing to /build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-amd64-dZO5N2/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs
+** R
+** data
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices
+** installing vignettes
+** testing if installed package can be loaded
+* DONE (edgeR)
+rm -vf /build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-amd64-dZO5N2/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-amd64-dZO5N2/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/COPYING \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-amd64-dZO5N2/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-amd64-dZO5N2/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-amd64-dZO5N2/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides/r-bioc-edger; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-edger.substvars
+dh_installdirs -pr-bioc-edger
+chmod 644 debian/r-bioc-edger/usr/lib/R/site-library/edgeR/doc/*
+dh_installdocs -pr-bioc-edger
+ install -g 0 -o 0 -d debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-amd64-dZO5N2/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/doc/r-bioc-edger \;
+ cp -a debian/README.test debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ chown -R 0:0 debian/r-bioc-edger/usr/share/doc
+ chmod -R go=rX debian/r-bioc-edger/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-edger/usr/share/doc
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-edger/usr/share/doc/r-bioc-edger/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-edger/usr/share/doc/r-bioc-edger/copyright
+dh_installexamples -pr-bioc-edger
+dh_installman -pr-bioc-edger
+dh_installinfo -pr-bioc-edger
+dh_installmenu -pr-bioc-edger
+dh_installcron -pr-bioc-edger
+dh_installinit -pr-bioc-edger
+dh_installdebconf -pr-bioc-edger
+ install -o 0 -g 0 -d debian/r-bioc-edger/DEBIAN
+dh_installemacsen -pr-bioc-edger
+dh_installcatalogs -pr-bioc-edger
+ grep -s -v '^misc:Depends=' debian/r-bioc-edger.substvars > debian/r-bioc-edger.substvars.new || true
+ mv debian/r-bioc-edger.substvars.new debian/r-bioc-edger.substvars
+dh_installpam -pr-bioc-edger
+dh_installlogrotate -pr-bioc-edger
+dh_installlogcheck -pr-bioc-edger
+dh_installchangelogs -pr-bioc-edger
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-edger/usr/share/doc/r-bioc-edger/changelog.Debian
+dh_installudev -pr-bioc-edger
+dh_lintian -pr-bioc-edger
+dh_bugfiles -pr-bioc-edger
+dh_install -pr-bioc-edger
+dh_link -pr-bioc-edger
+dh_installmime -pr-bioc-edger
+dh_installgsettings -pr-bioc-edger
+dh_strip -pr-bioc-edger
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dh_compress -pr-bioc-edger
+ cd debian/r-bioc-edger
+ chmod a-x usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save usr/share/doc/r-bioc-edger/changelog.Debian
+ gzip -9nf usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save usr/share/doc/r-bioc-edger/changelog.Debian
+ cd '/build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-amd64-dZO5N2/r-bioc-edger-3.2.3~dfsg'
+dh_fixperms -pr-bioc-edger
+ find debian/r-bioc-edger -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-edger ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-edger/usr/share/doc -type f ! -regex 'debian/r-bioc-edger/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-edger/usr/share/man debian/r-bioc-edger/usr/man/ debian/r-bioc-edger/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/lib/perl5 debian/r-bioc-edger/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-edger/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
+dh_makeshlibs -pr-bioc-edger
+ rm -f debian/r-bioc-edger/DEBIAN/shlibs
+dh_installdeb -pr-bioc-edger
+dh_perl -pr-bioc-edger
+dh_shlibdeps -pr-bioc-edger
+ dpkg-shlibdeps -Tdebian/r-bioc-edger.substvars debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so was not linked against libquadmath.so.0 (it uses none of the library's symbols)
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so was not linked against libgfortran.so.3 (it uses none of the library's symbols)
+dh_gencontrol -pr-bioc-edger
+ echo misc:Depends= >> debian/r-bioc-edger.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-edger.substvars -Pdebian/r-bioc-edger
+ chmod 644 debian/r-bioc-edger/DEBIAN/control
+ chown 0:0 debian/r-bioc-edger/DEBIAN/control
+dh_md5sums -pr-bioc-edger
+ (cd debian/r-bioc-edger >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-edger/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-edger/DEBIAN/md5sums
+dh_builddeb -pr-bioc-edger -- -Z xz
+ dpkg-deb -Z xz --build debian/r-bioc-edger ..
+dpkg-deb: building package `r-bioc-edger' in `../r-bioc-edger_3.2.3~dfsg-1_kfreebsd-amd64.deb'.
+ dpkg-genchanges -B -mkfreebsd-amd64 Build Daemon (fasch) <buildd_kfreebsd-amd64-fasch at buildd.debian.org> >../r-bioc-edger_3.2.3~dfsg-1_kfreebsd-amd64.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20130517-1414
+
+r-bioc-edger_3.2.3~dfsg-1_kfreebsd-amd64.changes:
+Format: 1.8
+Date: Fri, 17 May 2013 14:36:51 +0200
+Source: r-bioc-edger
+Binary: r-bioc-edger
+Architecture: kfreebsd-amd64
+Version: 3.2.3~dfsg-1
+Distribution: sid
+Urgency: low
+Maintainer: kfreebsd-amd64 Build Daemon (fasch) <buildd_kfreebsd-amd64-fasch at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
+Description:
+ r-bioc-edger - Empirical analysis of digital gene expression data in R
+Changes:
+ r-bioc-edger (3.2.3~dfsg-1) unstable; urgency=low
+ .
+ [ Charles Plessy ]
+ 74f1a5f Imported Upstream version 2.6.10~dfsg
+ d2d70ab Corrected VCS URLs.
+ 44c9d4e Regression tests for autopkgtest.
+ .
+ [ Andreas Tille ]
+ * Imported new upstream version 3.2.3~dfsg
+ * debian/control
+ - Added myself as Uploader
+ - Add ${shlibs:Depends} to ensure dependency from libc
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - normalised format
+ - Removed unneeded Pre-Depends: dpkg (>= 1.15.6)
+ - Removed versioned dependency of r-base-dev
+ - Package is "Architecture: any" (rather than all)
+ * debian/source/format: Add explicit source format specification
+ * debian/copyright:
+ - Update Source location
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - Add years to Copyright field
+ * debian/upstream: inst/CITATION asks for citing this more recent
+ paper that is now on top of debian/upstream
+ * debian/rules: remove executable flag from installed documentation
+Checksums-Sha1:
+ 2f6ec559763f1662ea1730703ab08ae638520d78 1365400 r-bioc-edger_3.2.3~dfsg-1_kfreebsd-amd64.deb
+Checksums-Sha256:
+ 0035f27a6d5589a746faffd3edd2126952387a68737ae34e972be76f2907c523 1365400 r-bioc-edger_3.2.3~dfsg-1_kfreebsd-amd64.deb
+Files:
+ 04aefacefe8537026909e86473b5aa7f 1365400 gnu-r optional r-bioc-edger_3.2.3~dfsg-1_kfreebsd-amd64.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-edger_3.2.3~dfsg-1_kfreebsd-amd64.deb
+────────────────────────────────────────────
+
+ new debian package, version 2.0.
+ size 1365400 bytes: control archive= 1888 bytes.
+ 1001 bytes, 17 lines control
+ 2932 bytes, 38 lines md5sums
+ Package: r-bioc-edger
+ Version: 3.2.3~dfsg-1
+ Architecture: kfreebsd-amd64
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 2417
+ Depends: r-base-core (>= 3.0.1~20130512-1), r-bioc-limma, libblas3 | libblas.so.3 | libatlas3-base, libc0.1 (>= 2.14), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3), liblapack3 | liblapack.so.3 | libatlas3-base, libquadmath0 (>= 4.6), libstdc++6 (>= 4.2.1)
+ Suggests: r-cran-mass
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
+ Description: Empirical analysis of digital gene expression data in R
+ Bioconductor package for differential expression analysis of whole
+ transcriptome sequencing (RNA-seq) and digital gene expression
+ profiles with biological replication. It uses empirical Bayes
+ estimation and exact tests based on the negative binomial
+ distribution. It is also useful for differential signal analysis with
+ other types of genome-scale count data.
+
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/
+-rw-r--r-- root/root 804 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/NAMESPACE
+-rw-r--r-- root/root 1111 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/DESCRIPTION
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/Meta/
+-rw-r--r-- root/root 994 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/Meta/package.rds
+-rw-r--r-- root/root 3639 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/Meta/Rd.rds
+-rw-r--r-- root/root 3475 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/Meta/hsearch.rds
+-rw-r--r-- root/root 1640 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/Meta/links.rds
+-rw-r--r-- root/root 161 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/Meta/data.rds
+-rw-r--r-- root/root 228 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/Meta/vignette.rds
+-rw-r--r-- root/root 368 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/libs/
+-rw-r--r-- root/root 46064 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/libs/edgeR.so
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/R/
+-rw-r--r-- root/root 1056 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/R/edgeR
+-rw-r--r-- root/root 116085 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/R/edgeR.rdb
+-rw-r--r-- root/root 2293 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/R/edgeR.rdx
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/data/
+-rw-r--r-- root/root 248500 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/data/NC1.txt
+-rw-r--r-- root/root 228426 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/data/NC2.txt
+-rw-r--r-- root/root 318545 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/data/Tu102.txt
+-rw-r--r-- root/root 263571 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/data/Tu98.txt
+-rw-r--r-- root/root 19 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/data/datalist
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/doc/
+-rw-r--r-- root/root 1826 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/doc/edgeR.Rnw
+-rw-r--r-- root/root 49354 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/doc/edgeR.pdf
+-rw-r--r-- root/root 879697 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/doc/edgeRUsersGuide.pdf
+-rw-r--r-- root/root 691 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/doc/index.html
+-rw-r--r-- root/root 2057 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/CITATION
+-rw-r--r-- root/root 13746 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/NEWS.Rd
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/help/
+-rw-r--r-- root/root 806 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/help/paths.rds
+-rw-r--r-- root/root 231719 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/help/edgeR.rdb
+-rw-r--r-- root/root 1757 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/help/edgeR.rdx
+-rw-r--r-- root/root 3776 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/help/AnIndex
+-rw-r--r-- root/root 1342 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/help/aliases.rds
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/html/
+-rw-r--r-- root/root 22781 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/html/00Index.html
+-rw-r--r-- root/root 1179 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/html/R.css
+-rw-r--r-- root/root 6834 2013-05-17 14:14 ./usr/lib/R/site-library/edgeR/INDEX
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/share/doc/r-bioc-edger/
+drwxr-xr-x root/root 0 2013-05-17 14:14 ./usr/share/doc/r-bioc-edger/tests/
+-rw-r--r-- root/root 1392 2013-04-03 22:17 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R.gz
+-rw-r--r-- root/root 5706 2013-04-08 00:02 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save.gz
+-rw-r--r-- root/root 816 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.test
+-rw-r--r-- root/root 274 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.Debian
+-rw-r--r-- root/root 1404 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/copyright
+-rw-r--r-- root/root 1384 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/changelog.Debian.gz
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-ka-sbuild-1368799942-99494/build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-amd64-dZO5N2
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: kfreebsd-amd64
+Build-Space: 6730
+Build-Time: 30
+Distribution: sid
+Install-Time: 83
+Job: r-bioc-edger_3.2.3~dfsg-1
+Package: r-bioc-edger
+Package-Time: 156
+Source-Version: 3.2.3~dfsg-1
+Space: 6730
+Status: successful
+Version: 3.2.3~dfsg-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20130517-1414
+Build needed 00:02:36, 6730k disc space
+Signature with key '4D96B7CE' requested:
diff --git a/kfreebsd-i386.log b/kfreebsd-i386.log
new file mode 100644
index 0000000..c3b6b34
--- /dev/null
+++ b/kfreebsd-i386.log
@@ -0,0 +1,1023 @@
+From buildd at fils.debian.org Fri May 17 13:59:11 2013
+Return-path: <buildd at fils.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at fils.debian.org>)
+ id 1UdLBf-0004s5-5h
+ for logs at buildd.debian.org; Fri, 17 May 2013 13:59:11 +0000
+Received: from fils.debian.org ([2001:41b8:202:deb:216:38ff:fe45:abf5])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=fils.debian.org, EMAIL=hostmaster at fils.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at fils.debian.org>)
+ id 1UdLBe-0005lK-0R; Fri, 17 May 2013 13:59:10 +0000
+Received: from buildd by fils.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at fils.debian.org>)
+ id 1UdLBL-0001ka-O3; Fri, 17 May 2013 13:58:51 +0000
+Message-Id: <E1UdLBL-0001ka-O3 at fils.debian.org>
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
+Date: Fri, 17 May 2013 13:58:51 +0000
+From: buildd on fils <buildd at fils.debian.org>
+To: logs at buildd.debian.org,christoph at debian.org
+Subject: Log for successful build of r-bioc-edger_3.2.3~dfsg-1 on
+ kfreebsd-i386 (dist=sid)
+Key-Id: 52E1CE73
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on fils.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-edger 3.2.3~dfsg-1 (kfreebsd-i386) 17 May 2013 13:57 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-edger
+Version: 3.2.3~dfsg-1
+Source Version: 3.2.3~dfsg-1
+Architecture: kfreebsd-i386
+Get:1 http://debian.netcologne.de unstable InRelease [205 kB]
+Get:2 http://debian.netcologne.de unstable/main Sources [6729 kB]
+Get:3 http://incoming.debian.org unstable InRelease [205 kB]
+Get:4 http://debian.netcologne.de unstable/contrib Sources [53.7 kB]
+Get:5 http://debian.netcologne.de unstable/non-free Sources [103 kB]
+Get:6 http://debian.netcologne.de unstable/main kfreebsd-i386 Packages [5907 kB]
+Get:7 http://incoming.debian.org buildd-unstable InRelease [111 kB]
+Get:8 http://incoming.debian.org unstable/main Sources [6729 kB]
+Get:9 http://debian.netcologne.de unstable/contrib kfreebsd-i386 Packages [36.7 kB]
+Get:10 http://incoming.debian.org unstable/contrib Sources [53.7 kB]
+Get:11 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:12 http://incoming.debian.org unstable/main kfreebsd-i386 Packages [5907 kB]
+Get:13 http://incoming.debian.org unstable/contrib kfreebsd-i386 Packages [36.7 kB]
+Get:14 http://incoming.debian.org buildd-unstable/main Sources [104 kB]
+Get:15 http://incoming.debian.org buildd-unstable/contrib Sources [873 B]
+Get:16 http://incoming.debian.org buildd-unstable/non-free Sources [2683 B]
+Get:17 http://incoming.debian.org buildd-unstable/main kfreebsd-i386 Packages [56.6 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib kfreebsd-i386 Packages [14 B]
+Fetched 26.3 MB in 15s (1649 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-edger' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/debian-med/r-bioc-edger.git
+Need to get 1218 kB of source archives.
+Get:1 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-bioc-edger 3.2.3~dfsg-1 (dsc) [1445 B]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-bioc-edger 3.2.3~dfsg-1 (tar) [1212 kB]
+Get:3 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-bioc-edger 3.2.3~dfsg-1 (diff) [4311 B]
+Fetched 1218 kB in 2s (424 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.6)
+fakeroot: already installed (1.18.4-2)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-edger build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, libc-bin, login, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev, r-bioc-limma
+Checking for already installed dependencies...
+base-files: already installed (7.2)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2+dfsg-1)
+bsdutils: already installed (1:2.20.1-5.3)
+coreutils: already installed (8.13-3.3)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1.1)
+findutils: already installed (4.4.2-5)
+freebsd-utils: already installed (9.0+ds1-11)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+libc-bin: already installed (2.13-38)
+login: already installed (1:4.1.5.1-1)
+ncurses-base: already installed (5.9-10)
+ncurses-bin: already installed (5.9-10)
+perl-base: already installed (5.14.2-21)
+sed: already installed (4.2.1-10)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-5)
+util-linux: already installed (2.20.1-5.3)
+libc6-dev: already installed (~*=PROVIDED=*=)
+gcc: already installed (4:4.7.2-1 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.7.2-1 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
+debhelper: missing
+Using default version 9.20130516
+cdbs: missing
+r-base-dev: missing
+r-bioc-limma: missing
+Checking for dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev r-bioc-limma
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ bsdmainutils cpp-4.7 file fontconfig fontconfig-config fonts-dejavu-core
+ g++-4.7 gcc-4.7 gcc-4.7-base gcc-4.8-base gettext gettext-base gfortran
+ gfortran-4.7 groff-base html2text intltool-debian libasprintf-dev
+ libasprintf0c2 libblas-dev libblas3 libbz2-dev libc-dev-bin libc0.1
+ libc0.1-dev libcairo2 libcroco3 libdatrie1 libffi6 libfontconfig1
+ libfreetype6 libgcc-4.7-dev libgcc1 libgettextpo-dev libgettextpo0
+ libgfortran-4.7-dev libgfortran3 libglib2.0-0 libgomp1 libice6 libjbig0
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5
+ libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev
+ libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0
+ libreadline-dev libreadline6-dev libsm6 libstdc++6 libstdc++6-4.7-dev
+ libthai-data libthai0 libtiff5 libtinfo-dev libtinfo5 libunistring0 libx11-6
+ libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
+ libxft2 libxml2 libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf
+ r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+ zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation devscripts gcc-4.7-locales dh-make
+ gcc-4.7-doc libstdc++6-4.7-dbg libmudflap0-4.7-dev libgcc1-dbg libgomp1-dbg
+ libitm1-dbg libquadmath0-dbg libmudflap0-dbg gettext-doc gfortran-doc
+ gfortran-4.7-doc libgfortran3-dbg groff glibc-doc ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp libstdc++6-4.7-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
+ texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
+ texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
+ texi2html tcl-tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev curl wget lynx-cur autopoint manpages-dev libc0.1-i686
+ libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl
+ r-recommended r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl
+ libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper file fontconfig fontconfig-config
+ fonts-dejavu-core gettext gettext-base gfortran gfortran-4.7 groff-base
+ html2text intltool-debian libasprintf-dev libasprintf0c2 libblas-dev
+ libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libffi6 libfontconfig1
+ libfreetype6 libgettextpo-dev libgettextpo0 libgfortran-4.7-dev libgfortran3
+ libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3
+ libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3
+ libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff5
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core r-base-dev r-bioc-limma tcl8.5 tk8.5
+ ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.7 g++-4.7 gcc-4.7 gcc-4.7-base gcc-4.8-base libc-dev-bin libc0.1
+ libc0.1-dev libgcc-4.7-dev libgcc1 libgomp1 libncurses5 libquadmath0
+ libstdc++6 libstdc++6-4.7-dev libtinfo5 ncurses-bin
+17 upgraded, 83 newly installed, 0 to remove and 13 not upgraded.
+Need to get 83.9 MB of archives.
+After this operation, 120 MB of additional disk space will be used.
+Get:1 http://debian.netcologne.de/debian/ unstable/main libc0.1-dev kfreebsd-i386 2.17-3 [2132 kB]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main libcroco3 kfreebsd-i386 0.6.8-2 [134 kB]
+Get:3 http://debian.netcologne.de/debian/ unstable/main libc-dev-bin kfreebsd-i386 2.17-3 [229 kB]
+Get:4 http://debian.netcologne.de/debian/ unstable/main libgomp1 kfreebsd-i386 4.8.0-7 [28.3 kB]
+Get:5 http://debian.netcologne.de/debian/ unstable/main gcc-4.8-base kfreebsd-i386 4.8.0-7 [148 kB]
+Get:6 http://debian.netcologne.de/debian/ unstable/main libgcc1 kfreebsd-i386 1:4.8.0-7 [52.8 kB]
+Get:7 http://debian.netcologne.de/debian/ unstable/main libquadmath0 kfreebsd-i386 4.8.0-7 [217 kB]
+Get:8 http://debian.netcologne.de/debian/ unstable/main libc0.1 kfreebsd-i386 2.17-3 [3887 kB]
+Get:9 http://debian.netcologne.de/debian/ unstable/main libstdc++6 kfreebsd-i386 4.8.0-7 [349 kB]
+Get:10 http://debian.netcologne.de/debian/ unstable/main libtinfo5 kfreebsd-i386 5.9+20130504-1 [289 kB]
+Get:11 http://debian.netcologne.de/debian/ unstable/main libncurses5 kfreebsd-i386 5.9+20130504-1 [116 kB]
+Get:12 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-bioc-limma kfreebsd-i386 3.16.3~dfsg-1 [1617 kB]
+Get:13 http://debian.netcologne.de/debian/ unstable/main ncurses-bin kfreebsd-i386 5.9+20130504-1 [357 kB]
+Get:14 http://debian.netcologne.de/debian/ unstable/main libpipeline1 kfreebsd-i386 1.2.3-1 [39.4 kB]
+Get:15 http://debian.netcologne.de/debian/ unstable/main groff-base kfreebsd-i386 1.22.2-2 [733 kB]
+Get:16 http://debian.netcologne.de/debian/ unstable/main bsdmainutils kfreebsd-i386 9.0.5 [205 kB]
+Get:17 http://debian.netcologne.de/debian/ unstable/main man-db kfreebsd-i386 2.6.3-6 [889 kB]
+Get:18 http://debian.netcologne.de/debian/ unstable/main libasprintf0c2 kfreebsd-i386 0.18.1.1-10 [27.0 kB]
+Get:19 http://debian.netcologne.de/debian/ unstable/main libmagic1 kfreebsd-i386 1:5.14-1 [218 kB]
+Get:20 http://debian.netcologne.de/debian/ unstable/main libpcre3 kfreebsd-i386 1:8.31-2 [247 kB]
+Get:21 http://debian.netcologne.de/debian/ unstable/main libxml2 kfreebsd-i386 2.8.0+dfsg1-7+nmu1 [905 kB]
+Get:22 http://debian.netcologne.de/debian/ unstable/main libfreetype6 kfreebsd-i386 2.4.9-1.1 [453 kB]
+Get:23 http://debian.netcologne.de/debian/ unstable/main ucf all 3.0025+nmu3 [70.8 kB]
+Get:24 http://debian.netcologne.de/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
+Get:25 http://debian.netcologne.de/debian/ unstable/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
+Get:26 http://debian.netcologne.de/debian/ unstable/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:27 http://debian.netcologne.de/debian/ unstable/main libfontconfig1 kfreebsd-i386 2.9.0-7.1 [300 kB]
+Get:28 http://debian.netcologne.de/debian/ unstable/main libpixman-1-0 kfreebsd-i386 0.26.0-4 [442 kB]
+Get:29 http://debian.netcologne.de/debian/ unstable/main libpng12-0 kfreebsd-i386 1.2.49-4 [192 kB]
+Get:30 http://debian.netcologne.de/debian/ unstable/main libxau6 kfreebsd-i386 1:1.0.7-1 [18.5 kB]
+Get:31 http://debian.netcologne.de/debian/ unstable/main libxdmcp6 kfreebsd-i386 1:1.1.1-1 [26.4 kB]
+Get:32 http://debian.netcologne.de/debian/ unstable/main libxcb1 kfreebsd-i386 1.8.1-2 [53.8 kB]
+Get:33 http://debian.netcologne.de/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:34 http://debian.netcologne.de/debian/ unstable/main libx11-6 kfreebsd-i386 2:1.5.0-1 [906 kB]
+Get:35 http://debian.netcologne.de/debian/ unstable/main libxcb-render0 kfreebsd-i386 1.8.1-2 [19.6 kB]
+Get:36 http://debian.netcologne.de/debian/ unstable/main libxcb-shm0 kfreebsd-i386 1.8.1-2 [10.5 kB]
+Get:37 http://debian.netcologne.de/debian/ unstable/main libxext6 kfreebsd-i386 2:1.3.1-2 [55.5 kB]
+Get:38 http://debian.netcologne.de/debian/ unstable/main libxrender1 kfreebsd-i386 1:0.9.7-1 [32.4 kB]
+Get:39 http://debian.netcologne.de/debian/ unstable/main libcairo2 kfreebsd-i386 1.12.14-4 [1038 kB]
+Get:40 http://debian.netcologne.de/debian/ unstable/main libffi6 kfreebsd-i386 3.0.13-4 [17.6 kB]
+Get:41 http://debian.netcologne.de/debian/ unstable/main libglib2.0-0 kfreebsd-i386 2.36.1-2build1 [2036 kB]
+Get:42 http://debian.netcologne.de/debian/ unstable/main libdatrie1 kfreebsd-i386 0.2.6-2 [30.9 kB]
+Get:43 http://debian.netcologne.de/debian/ unstable/main libunistring0 kfreebsd-i386 0.9.3-5 [440 kB]
+Get:44 http://debian.netcologne.de/debian/ unstable/main libgettextpo0 kfreebsd-i386 0.18.1.1-10 [141 kB]
+Get:45 http://debian.netcologne.de/debian/ unstable/main libgfortran3 kfreebsd-i386 4.8.0-7 [327 kB]
+Get:46 http://debian.netcologne.de/debian/ unstable/main x11-common all 1:7.7+3 [284 kB]
+Get:47 http://debian.netcologne.de/debian/ unstable/main libice6 kfreebsd-i386 2:1.0.8-2 [61.5 kB]
+Get:48 http://debian.netcologne.de/debian/ unstable/main libjpeg8 kfreebsd-i386 8d-1 [132 kB]
+Get:49 http://debian.netcologne.de/debian/ unstable/main libthai-data all 0.1.19-2 [156 kB]
+Get:50 http://debian.netcologne.de/debian/ unstable/main libthai0 kfreebsd-i386 0.1.19-2 [43.6 kB]
+Get:51 http://debian.netcologne.de/debian/ unstable/main libxft2 kfreebsd-i386 2.3.1-1 [60.9 kB]
+Get:52 http://debian.netcologne.de/debian/ unstable/main fontconfig kfreebsd-i386 2.9.0-7.1 [347 kB]
+Get:53 http://debian.netcologne.de/debian/ unstable/main libpango1.0-0 kfreebsd-i386 1.30.0-1 [463 kB]
+Get:54 http://debian.netcologne.de/debian/ unstable/main libpaper1 kfreebsd-i386 1.1.24+nmu2 [21.9 kB]
+Get:55 http://debian.netcologne.de/debian/ unstable/main libpcrecpp0 kfreebsd-i386 1:8.31-2 [129 kB]
+Get:56 http://debian.netcologne.de/debian/ unstable/main libsm6 kfreebsd-i386 2:1.2.1-2 [33.5 kB]
+Get:57 http://debian.netcologne.de/debian/ unstable/main libjbig0 kfreebsd-i386 2.0-2 [31.8 kB]
+Get:58 http://debian.netcologne.de/debian/ unstable/main libtiff5 kfreebsd-i386 4.0.2-6 [237 kB]
+Get:59 http://debian.netcologne.de/debian/ unstable/main libxss1 kfreebsd-i386 1:1.2.2-1 [17.5 kB]
+Get:60 http://debian.netcologne.de/debian/ unstable/main libxt6 kfreebsd-i386 1:1.1.3-1 [205 kB]
+Get:61 http://debian.netcologne.de/debian/ unstable/main g++-4.7 kfreebsd-i386 4.7.3-4 [5452 kB]
+Get:62 http://debian.netcologne.de/debian/ unstable/main gcc-4.7 kfreebsd-i386 4.7.3-4 [5420 kB]
+Get:63 http://debian.netcologne.de/debian/ unstable/main libstdc++6-4.7-dev kfreebsd-i386 4.7.3-4 [1643 kB]
+Get:64 http://debian.netcologne.de/debian/ unstable/main libgcc-4.7-dev kfreebsd-i386 4.7.3-4 [364 kB]
+Get:65 http://debian.netcologne.de/debian/ unstable/main cpp-4.7 kfreebsd-i386 4.7.3-4 [5010 kB]
+Get:66 http://debian.netcologne.de/debian/ unstable/main gcc-4.7-base kfreebsd-i386 4.7.3-4 [149 kB]
+Get:67 http://debian.netcologne.de/debian/ unstable/main file kfreebsd-i386 1:5.14-1 [53.8 kB]
+Get:68 http://debian.netcologne.de/debian/ unstable/main gettext-base kfreebsd-i386 0.18.1.1-10 [131 kB]
+Get:69 http://debian.netcologne.de/debian/ unstable/main cdbs all 0.4.121 [80.5 kB]
+Get:70 http://debian.netcologne.de/debian/ unstable/main html2text kfreebsd-i386 1.3.2a-15 [101 kB]
+Get:71 http://debian.netcologne.de/debian/ unstable/main libasprintf-dev kfreebsd-i386 0.18.1.1-10 [26.6 kB]
+Get:72 http://debian.netcologne.de/debian/ unstable/main libgettextpo-dev kfreebsd-i386 0.18.1.1-10 [170 kB]
+Get:73 http://debian.netcologne.de/debian/ unstable/main gettext kfreebsd-i386 0.18.1.1-10 [1747 kB]
+Get:74 http://debian.netcologne.de/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:75 http://debian.netcologne.de/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:76 http://debian.netcologne.de/debian/ unstable/main debhelper all 9.20130516 [708 kB]
+Get:77 http://debian.netcologne.de/debian/ unstable/main libgfortran-4.7-dev kfreebsd-i386 4.7.3-4 [400 kB]
+Get:78 http://debian.netcologne.de/debian/ unstable/main gfortran-4.7 kfreebsd-i386 4.7.3-4 [5325 kB]
+Get:79 http://debian.netcologne.de/debian/ unstable/main gfortran kfreebsd-i386 4:4.7.2-1 [1116 B]
+Get:80 http://debian.netcologne.de/debian/ unstable/main libblas3 kfreebsd-i386 1.2.20110419-5 [213 kB]
+Get:81 http://debian.netcologne.de/debian/ unstable/main libblas-dev kfreebsd-i386 1.2.20110419-5 [216 kB]
+Get:82 http://debian.netcologne.de/debian/ unstable/main libbz2-dev kfreebsd-i386 1.0.6-4 [31.6 kB]
+Get:83 http://debian.netcologne.de/debian/ unstable/main libjpeg8-dev kfreebsd-i386 8d-1 [232 kB]
+Get:84 http://debian.netcologne.de/debian/ unstable/main liblapack3 kfreebsd-i386 3.4.2+dfsg-1 [3349 kB]
+Get:85 http://debian.netcologne.de/debian/ unstable/main liblapack-dev kfreebsd-i386 3.4.2+dfsg-1 [3707 kB]
+Get:86 http://debian.netcologne.de/debian/ unstable/main libtinfo-dev kfreebsd-i386 5.9+20130504-1 [97.1 kB]
+Get:87 http://debian.netcologne.de/debian/ unstable/main libncurses5-dev kfreebsd-i386 5.9+20130504-1 [212 kB]
+Get:88 http://debian.netcologne.de/debian/ unstable/main libpaper-utils kfreebsd-i386 1.1.24+nmu2 [18.1 kB]
+Get:89 http://debian.netcologne.de/debian/ unstable/main libpcre3-dev kfreebsd-i386 1:8.31-2 [351 kB]
+Get:90 http://debian.netcologne.de/debian/ unstable/main zlib1g-dev kfreebsd-i386 1:1.2.8.dfsg-1 [215 kB]
+Get:91 http://debian.netcologne.de/debian/ unstable/main libpng12-dev kfreebsd-i386 1.2.49-4 [266 kB]
+Get:92 http://debian.netcologne.de/debian/ unstable/main libreadline6-dev kfreebsd-i386 6.2+dfsg-0.1 [177 kB]
+Get:93 http://debian.netcologne.de/debian/ unstable/main libreadline-dev kfreebsd-i386 6.2+dfsg-0.1 [900 B]
+Get:94 http://debian.netcologne.de/debian/ unstable/main zip kfreebsd-i386 3.0-7 [329 kB]
+Get:95 http://debian.netcologne.de/debian/ unstable/main unzip kfreebsd-i386 6.0-9 [187 kB]
+Get:96 http://debian.netcologne.de/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:97 http://debian.netcologne.de/debian/ unstable/main tcl8.5 kfreebsd-i386 8.5.11-2 [1634 kB]
+Get:98 http://debian.netcologne.de/debian/ unstable/main tk8.5 kfreebsd-i386 8.5.11-2 [1185 kB]
+Get:99 http://debian.netcologne.de/debian/ unstable/main r-base-core kfreebsd-i386 3.0.0-2 [21.2 MB]
+Get:100 http://debian.netcologne.de/debian/ unstable/main r-base-dev all 3.0.0-2 [3900 B]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 83.9 MB in 10s (8275 kB/s)
+(Reading database ... 11362 files and directories currently installed.)
+Preparing to replace libc0.1-dev:kfreebsd-i386 2.13-38 (using .../libc0.1-dev_2.17-3_kfreebsd-i386.deb) ...
+Unpacking replacement libc0.1-dev:kfreebsd-i386 ...
+Preparing to replace libc-dev-bin 2.13-38 (using .../libc-dev-bin_2.17-3_kfreebsd-i386.deb) ...
+Unpacking replacement libc-dev-bin ...
+Preparing to replace libgomp1:kfreebsd-i386 4.8.0-6 (using .../libgomp1_4.8.0-7_kfreebsd-i386.deb) ...
+Unpacking replacement libgomp1:kfreebsd-i386 ...
+Preparing to replace gcc-4.8-base:kfreebsd-i386 4.8.0-6 (using .../gcc-4.8-base_4.8.0-7_kfreebsd-i386.deb) ...
+Unpacking replacement gcc-4.8-base:kfreebsd-i386 ...
+Setting up gcc-4.8-base:kfreebsd-i386 (4.8.0-7) ...
+(Reading database ... 11369 files and directories currently installed.)
+Preparing to replace libgcc1:kfreebsd-i386 1:4.8.0-6 (using .../libgcc1_1%3a4.8.0-7_kfreebsd-i386.deb) ...
+Unpacking replacement libgcc1:kfreebsd-i386 ...
+Setting up libgcc1:kfreebsd-i386 (1:4.8.0-7) ...
+(Reading database ... 11369 files and directories currently installed.)
+Preparing to replace libquadmath0:kfreebsd-i386 4.8.0-6 (using .../libquadmath0_4.8.0-7_kfreebsd-i386.deb) ...
+Unpacking replacement libquadmath0:kfreebsd-i386 ...
+Preparing to replace libc0.1:kfreebsd-i386 2.13-38 (using .../libc0.1_2.17-3_kfreebsd-i386.deb) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Unpacking replacement libc0.1:kfreebsd-i386 ...
+Setting up libc0.1:kfreebsd-i386 (2.17-3) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Nothing to restart.
+(Reading database ... 11375 files and directories currently installed.)
+Preparing to replace libstdc++6:kfreebsd-i386 4.8.0-6 (using .../libstdc++6_4.8.0-7_kfreebsd-i386.deb) ...
+Unpacking replacement libstdc++6:kfreebsd-i386 ...
+Setting up libstdc++6:kfreebsd-i386 (4.8.0-7) ...
+(Reading database ... 11375 files and directories currently installed.)
+Preparing to replace libtinfo5:kfreebsd-i386 5.9-10 (using .../libtinfo5_5.9+20130504-1_kfreebsd-i386.deb) ...
+Unpacking replacement libtinfo5:kfreebsd-i386 ...
+Setting up libtinfo5:kfreebsd-i386 (5.9+20130504-1) ...
+(Reading database ... 11375 files and directories currently installed.)
+Preparing to replace libncurses5:kfreebsd-i386 5.9-10 (using .../libncurses5_5.9+20130504-1_kfreebsd-i386.deb) ...
+Unpacking replacement libncurses5:kfreebsd-i386 ...
+Setting up libncurses5:kfreebsd-i386 (5.9+20130504-1) ...
+(Reading database ... 11375 files and directories currently installed.)
+Preparing to replace ncurses-bin 5.9-10 (using .../ncurses-bin_5.9+20130504-1_kfreebsd-i386.deb) ...
+Unpacking replacement ncurses-bin ...
+Setting up ncurses-bin (5.9+20130504-1) ...
+Selecting previously unselected package libpipeline1:kfreebsd-i386.
+(Reading database ... 11373 files and directories currently installed.)
+Unpacking libpipeline1:kfreebsd-i386 (from .../libpipeline1_1.2.3-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.22.2-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_kfreebsd-i386.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.3-6_kfreebsd-i386.deb) ...
+Selecting previously unselected package libasprintf0c2:kfreebsd-i386.
+Unpacking libasprintf0c2:kfreebsd-i386 (from .../libasprintf0c2_0.18.1.1-10_kfreebsd-i386.deb) ...
+Selecting previously unselected package libmagic1:kfreebsd-i386.
+Unpacking libmagic1:kfreebsd-i386 (from .../libmagic1_1%3a5.14-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libpcre3:kfreebsd-i386.
+Unpacking libpcre3:kfreebsd-i386 (from .../libpcre3_1%3a8.31-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libxml2:kfreebsd-i386.
+Unpacking libxml2:kfreebsd-i386 (from .../libxml2_2.8.0+dfsg1-7+nmu1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libfreetype6:kfreebsd-i386.
+Unpacking libfreetype6:kfreebsd-i386 (from .../libfreetype6_2.4.9-1.1_kfreebsd-i386.deb) ...
+Selecting previously unselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ...
+Moving old data out of the way
+Selecting previously unselected package fonts-dejavu-core.
+Unpacking fonts-dejavu-core (from .../fonts-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ...
+Selecting previously unselected package libfontconfig1:kfreebsd-i386.
+Unpacking libfontconfig1:kfreebsd-i386 (from .../libfontconfig1_2.9.0-7.1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libpixman-1-0:kfreebsd-i386.
+Unpacking libpixman-1-0:kfreebsd-i386 (from .../libpixman-1-0_0.26.0-4_kfreebsd-i386.deb) ...
+Selecting previously unselected package libpng12-0:kfreebsd-i386.
+Unpacking libpng12-0:kfreebsd-i386 (from .../libpng12-0_1.2.49-4_kfreebsd-i386.deb) ...
+Selecting previously unselected package libxau6:kfreebsd-i386.
+Unpacking libxau6:kfreebsd-i386 (from .../libxau6_1%3a1.0.7-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libxdmcp6:kfreebsd-i386.
+Unpacking libxdmcp6:kfreebsd-i386 (from .../libxdmcp6_1%3a1.1.1-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libxcb1:kfreebsd-i386.
+Unpacking libxcb1:kfreebsd-i386 (from .../libxcb1_1.8.1-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ...
+Selecting previously unselected package libx11-6:kfreebsd-i386.
+Unpacking libx11-6:kfreebsd-i386 (from .../libx11-6_2%3a1.5.0-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libxcb-render0:kfreebsd-i386.
+Unpacking libxcb-render0:kfreebsd-i386 (from .../libxcb-render0_1.8.1-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libxcb-shm0:kfreebsd-i386.
+Unpacking libxcb-shm0:kfreebsd-i386 (from .../libxcb-shm0_1.8.1-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libxext6:kfreebsd-i386.
+Unpacking libxext6:kfreebsd-i386 (from .../libxext6_2%3a1.3.1-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libxrender1:kfreebsd-i386.
+Unpacking libxrender1:kfreebsd-i386 (from .../libxrender1_1%3a0.9.7-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libcairo2:kfreebsd-i386.
+Unpacking libcairo2:kfreebsd-i386 (from .../libcairo2_1.12.14-4_kfreebsd-i386.deb) ...
+Selecting previously unselected package libffi6:kfreebsd-i386.
+Unpacking libffi6:kfreebsd-i386 (from .../libffi6_3.0.13-4_kfreebsd-i386.deb) ...
+Selecting previously unselected package libglib2.0-0:kfreebsd-i386.
+Unpacking libglib2.0-0:kfreebsd-i386 (from .../libglib2.0-0_2.36.1-2build1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libcroco3:kfreebsd-i386.
+Unpacking libcroco3:kfreebsd-i386 (from .../libcroco3_0.6.8-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libdatrie1:kfreebsd-i386.
+Unpacking libdatrie1:kfreebsd-i386 (from .../libdatrie1_0.2.6-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libunistring0:kfreebsd-i386.
+Unpacking libunistring0:kfreebsd-i386 (from .../libunistring0_0.9.3-5_kfreebsd-i386.deb) ...
+Selecting previously unselected package libgettextpo0:kfreebsd-i386.
+Unpacking libgettextpo0:kfreebsd-i386 (from .../libgettextpo0_0.18.1.1-10_kfreebsd-i386.deb) ...
+Selecting previously unselected package libgfortran3:kfreebsd-i386.
+Unpacking libgfortran3:kfreebsd-i386 (from .../libgfortran3_4.8.0-7_kfreebsd-i386.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.7+3_all.deb) ...
+Selecting previously unselected package libice6:kfreebsd-i386.
+Unpacking libice6:kfreebsd-i386 (from .../libice6_2%3a1.0.8-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libjpeg8:kfreebsd-i386.
+Unpacking libjpeg8:kfreebsd-i386 (from .../libjpeg8_8d-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.19-2_all.deb) ...
+Selecting previously unselected package libthai0:kfreebsd-i386.
+Unpacking libthai0:kfreebsd-i386 (from .../libthai0_0.1.19-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libxft2:kfreebsd-i386.
+Unpacking libxft2:kfreebsd-i386 (from .../libxft2_2.3.1-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libpango1.0-0:kfreebsd-i386.
+Unpacking libpango1.0-0:kfreebsd-i386 (from .../libpango1.0-0_1.30.0-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libpaper1:kfreebsd-i386.
+Unpacking libpaper1:kfreebsd-i386 (from .../libpaper1_1.1.24+nmu2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libpcrecpp0:kfreebsd-i386.
+Unpacking libpcrecpp0:kfreebsd-i386 (from .../libpcrecpp0_1%3a8.31-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libsm6:kfreebsd-i386.
+Unpacking libsm6:kfreebsd-i386 (from .../libsm6_2%3a1.2.1-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libjbig0:kfreebsd-i386.
+Unpacking libjbig0:kfreebsd-i386 (from .../libjbig0_2.0-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libtiff5:kfreebsd-i386.
+Unpacking libtiff5:kfreebsd-i386 (from .../libtiff5_4.0.2-6_kfreebsd-i386.deb) ...
+Selecting previously unselected package libxss1:kfreebsd-i386.
+Unpacking libxss1:kfreebsd-i386 (from .../libxss1_1%3a1.2.2-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libxt6:kfreebsd-i386.
+Unpacking libxt6:kfreebsd-i386 (from .../libxt6_1%3a1.1.3-1_kfreebsd-i386.deb) ...
+Preparing to replace g++-4.7 4.7.3-3 (using .../g++-4.7_4.7.3-4_kfreebsd-i386.deb) ...
+Unpacking replacement g++-4.7 ...
+Preparing to replace gcc-4.7 4.7.3-3 (using .../gcc-4.7_4.7.3-4_kfreebsd-i386.deb) ...
+Unpacking replacement gcc-4.7 ...
+Preparing to replace libstdc++6-4.7-dev:kfreebsd-i386 4.7.3-3 (using .../libstdc++6-4.7-dev_4.7.3-4_kfreebsd-i386.deb) ...
+Unpacking replacement libstdc++6-4.7-dev:kfreebsd-i386 ...
+Preparing to replace libgcc-4.7-dev:kfreebsd-i386 4.7.3-3 (using .../libgcc-4.7-dev_4.7.3-4_kfreebsd-i386.deb) ...
+Unpacking replacement libgcc-4.7-dev:kfreebsd-i386 ...
+Preparing to replace cpp-4.7 4.7.3-3 (using .../cpp-4.7_4.7.3-4_kfreebsd-i386.deb) ...
+Unpacking replacement cpp-4.7 ...
+Preparing to replace gcc-4.7-base:kfreebsd-i386 4.7.3-3 (using .../gcc-4.7-base_4.7.3-4_kfreebsd-i386.deb) ...
+Unpacking replacement gcc-4.7-base:kfreebsd-i386 ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_1%3a5.14-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_kfreebsd-i386.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
+Selecting previously unselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_kfreebsd-i386.deb) ...
+Selecting previously unselected package libasprintf-dev:kfreebsd-i386.
+Unpacking libasprintf-dev:kfreebsd-i386 (from .../libasprintf-dev_0.18.1.1-10_kfreebsd-i386.deb) ...
+Selecting previously unselected package libgettextpo-dev:kfreebsd-i386.
+Unpacking libgettextpo-dev:kfreebsd-i386 (from .../libgettextpo-dev_0.18.1.1-10_kfreebsd-i386.deb) ...
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-10_kfreebsd-i386.deb) ...
+Selecting previously unselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously unselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_9.20130516_all.deb) ...
+Selecting previously unselected package libgfortran-4.7-dev:kfreebsd-i386.
+Unpacking libgfortran-4.7-dev:kfreebsd-i386 (from .../libgfortran-4.7-dev_4.7.3-4_kfreebsd-i386.deb) ...
+Selecting previously unselected package gfortran-4.7.
+Unpacking gfortran-4.7 (from .../gfortran-4.7_4.7.3-4_kfreebsd-i386.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.7.2-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libblas3.
+Unpacking libblas3 (from .../libblas3_1.2.20110419-5_kfreebsd-i386.deb) ...
+Selecting previously unselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_kfreebsd-i386.deb) ...
+Selecting previously unselected package libbz2-dev:kfreebsd-i386.
+Unpacking libbz2-dev:kfreebsd-i386 (from .../libbz2-dev_1.0.6-4_kfreebsd-i386.deb) ...
+Selecting previously unselected package libjpeg8-dev:kfreebsd-i386.
+Unpacking libjpeg8-dev:kfreebsd-i386 (from .../libjpeg8-dev_8d-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package liblapack3.
+Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.4.2+dfsg-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libtinfo-dev:kfreebsd-i386.
+Unpacking libtinfo-dev:kfreebsd-i386 (from .../libtinfo-dev_5.9+20130504-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libncurses5-dev:kfreebsd-i386.
+Unpacking libncurses5-dev:kfreebsd-i386 (from .../libncurses5-dev_5.9+20130504-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libpcre3-dev:kfreebsd-i386.
+Unpacking libpcre3-dev:kfreebsd-i386 (from .../libpcre3-dev_1%3a8.31-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package zlib1g-dev:kfreebsd-i386.
+Unpacking zlib1g-dev:kfreebsd-i386 (from .../zlib1g-dev_1%3a1.2.8.dfsg-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_kfreebsd-i386.deb) ...
+Selecting previously unselected package libreadline6-dev:kfreebsd-i386.
+Unpacking libreadline6-dev:kfreebsd-i386 (from .../libreadline6-dev_6.2+dfsg-0.1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libreadline-dev:kfreebsd-i386.
+Unpacking libreadline-dev:kfreebsd-i386 (from .../libreadline-dev_6.2+dfsg-0.1_kfreebsd-i386.deb) ...
+Selecting previously unselected package zip.
+Unpacking zip (from .../zip_3.0-7_kfreebsd-i386.deb) ...
+Selecting previously unselected package unzip.
+Unpacking unzip (from .../unzip_6.0-9_kfreebsd-i386.deb) ...
+Selecting previously unselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
+Selecting previously unselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_3.0.0-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_3.0.0-2_all.deb) ...
+Selecting previously unselected package r-bioc-limma.
+Unpacking r-bioc-limma (from .../r-bioc-limma_3.16.3~dfsg-1_kfreebsd-i386.deb) ...
+Setting up libc-dev-bin (2.17-3) ...
+Setting up libc0.1-dev:kfreebsd-i386 (2.17-3) ...
+Setting up libgomp1:kfreebsd-i386 (4.8.0-7) ...
+Setting up libquadmath0:kfreebsd-i386 (4.8.0-7) ...
+Setting up libpipeline1:kfreebsd-i386 (1.2.3-1) ...
+Setting up groff-base (1.22.2-2) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.3-6) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:kfreebsd-i386 (0.18.1.1-10) ...
+Setting up libmagic1:kfreebsd-i386 (1:5.14-1) ...
+Setting up libpcre3:kfreebsd-i386 (1:8.31-2) ...
+Setting up libxml2:kfreebsd-i386 (2.8.0+dfsg1-7+nmu1) ...
+Setting up libfreetype6:kfreebsd-i386 (2.4.9-1.1) ...
+Setting up ucf (3.0025+nmu3) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:kfreebsd-i386 (2.9.0-7.1) ...
+Setting up libpixman-1-0:kfreebsd-i386 (0.26.0-4) ...
+Setting up libpng12-0:kfreebsd-i386 (1.2.49-4) ...
+Setting up libxau6:kfreebsd-i386 (1:1.0.7-1) ...
+Setting up libxdmcp6:kfreebsd-i386 (1:1.1.1-1) ...
+Setting up libxcb1:kfreebsd-i386 (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:kfreebsd-i386 (2:1.5.0-1) ...
+Setting up libxcb-render0:kfreebsd-i386 (1.8.1-2) ...
+Setting up libxcb-shm0:kfreebsd-i386 (1.8.1-2) ...
+Setting up libxext6:kfreebsd-i386 (2:1.3.1-2) ...
+Setting up libxrender1:kfreebsd-i386 (1:0.9.7-1) ...
+Setting up libcairo2:kfreebsd-i386 (1.12.14-4) ...
+Setting up libffi6:kfreebsd-i386 (3.0.13-4) ...
+Setting up libglib2.0-0:kfreebsd-i386 (2.36.1-2build1) ...
+No schema files found: doing nothing.
+Setting up libcroco3:kfreebsd-i386 (0.6.8-2) ...
+Setting up libdatrie1:kfreebsd-i386 (0.2.6-2) ...
+Setting up libunistring0:kfreebsd-i386 (0.9.3-5) ...
+Setting up libgettextpo0:kfreebsd-i386 (0.18.1.1-10) ...
+Setting up libgfortran3:kfreebsd-i386 (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6:kfreebsd-i386 (2:1.0.8-2) ...
+Setting up libjpeg8:kfreebsd-i386 (8d-1) ...
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:kfreebsd-i386 (0.1.19-2) ...
+Setting up libxft2:kfreebsd-i386 (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
+Regenerating fonts cache... done.
+Setting up libpango1.0-0:kfreebsd-i386 (1.30.0-1) ...
+Setting up libpaper1:kfreebsd-i386 (1.1.24+nmu2) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpcrecpp0:kfreebsd-i386 (1:8.31-2) ...
+Setting up libsm6:kfreebsd-i386 (2:1.2.1-2) ...
+Setting up libjbig0:kfreebsd-i386 (2.0-2) ...
+Setting up libtiff5:kfreebsd-i386 (4.0.2-6) ...
+Setting up libxss1:kfreebsd-i386 (1:1.2.2-1) ...
+Setting up libxt6:kfreebsd-i386 (1:1.1.3-1) ...
+Setting up gcc-4.7-base:kfreebsd-i386 (4.7.3-4) ...
+Setting up cpp-4.7 (4.7.3-4) ...
+Setting up libgcc-4.7-dev:kfreebsd-i386 (4.7.3-4) ...
+Setting up gcc-4.7 (4.7.3-4) ...
+Setting up libstdc++6-4.7-dev:kfreebsd-i386 (4.7.3-4) ...
+Setting up g++-4.7 (4.7.3-4) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libasprintf-dev:kfreebsd-i386 (0.18.1.1-10) ...
+Setting up libgettextpo-dev:kfreebsd-i386 (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20130516) ...
+Setting up libgfortran-4.7-dev:kfreebsd-i386 (4.7.3-4) ...
+Setting up gfortran-4.7 (4.7.3-4) ...
+Setting up gfortran (4:4.7.2-1) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:kfreebsd-i386 (1.0.6-4) ...
+Setting up libjpeg8-dev:kfreebsd-i386 (8d-1) ...
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:kfreebsd-i386 (5.9+20130504-1) ...
+Setting up libncurses5-dev:kfreebsd-i386 (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:kfreebsd-i386 (1:8.31-2) ...
+Setting up zlib1g-dev:kfreebsd-i386 (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:kfreebsd-i386 (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:kfreebsd-i386 (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.0-2) ...
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (3.0.0-2) ...
+Setting up r-bioc-limma (3.16.3~dfsg-1) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 13 not upgraded.
+Checking correctness of dependencies...
+Kernel: GNU/kFreeBSD 8.1-1-686-smp kfreebsd-i386 (i686)
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.7_4.7.3-4 gcc-4.7_4.7.3-4 kfreebsd-kernel-headers_0.83 libc0.1-dev_2.17-3 libstdc++6_4.8.0-7 libstdc++6-4.7-dev_4.7.3-4
+Package versions: apt_0.9.8 base-files_7.2 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.13-3.3 cpp_4:4.7.2-1 cpp-4.7_4.7.3-4 dash_0.5.7-3 debconf_1.5.50 debconf-i18n_1.5.50 debfoster_2.7-1.2 debhelper_9.20130516 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-1 find [...]
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Fri May 17 13:25:10 2013 UTC using DSA key ID C09FD35A
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-edger_3.2.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-edger in r-bioc-edger-3.2.3~dfsg
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg-1.debian.tar.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: source package r-bioc-edger
+dpkg-buildpackage: source version 3.2.3~dfsg-1
+ dpkg-source --before-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: host architecture kfreebsd-i386
+ fakeroot debian/rules clean
+test -x debian/rules
+dh_testroot
+dh_clean
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build-arch
+test -x debian/rules
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+ fakeroot debian/rules binary-arch
+test -x debian/rules
+dh_testroot
+dh_prep
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+dh_installdirs -A
+ install -d debian/r-bioc-edger
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-edger/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 3.0.0-2)" >> debian/r-bioc-edger.substvars
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-i386-FaYs8e/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-i386-FaYs8e/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'edgeR' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-i386-FaYs8e/r-bioc-edger-3.2.3~dfsg/src'
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c R_exact_test_by_deviance.cpp -o R_exact_test_by_deviance.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c R_loess_by_col.cpp -o R_loess_by_col.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c R_cr_adjust.cpp -o R_cr_adjust.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c R_levenberg.cpp -o R_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c R_maximize_interpolant.cpp -o R_maximize_interpolant.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c R_one_group.cpp -o R_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c R_simple_good_turing.cpp -o R_simple_good_turing.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c core/adj_coxreid.cpp -o core/adj_coxreid.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c core/glm_levenberg.cpp -o core/glm_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c core/glm_one_group.cpp -o core/glm_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c core/interpolator.cpp -o core/interpolator.o
+gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O2 -pipe -g -c core/fmm_spline.c -o core/fmm_spline.o
+g++ -shared -o edgeR.so R_exact_test_by_deviance.o R_loess_by_col.o R_cr_adjust.o R_levenberg.o R_maximize_interpolant.o R_one_group.o R_simple_good_turing.o core/adj_coxreid.o core/glm_levenberg.o core/glm_one_group.o core/interpolator.o core/fmm_spline.o -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-i386-FaYs8e/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-i386-FaYs8e/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-i386-FaYs8e/r-bioc-edger-3.2.3~dfsg/src'
+installing to /build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-i386-FaYs8e/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs
+** R
+** data
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices
+** installing vignettes
+** testing if installed package can be loaded
+* DONE (edgeR)
+rm -vf /build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-i386-FaYs8e/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-i386-FaYs8e/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/COPYING \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-i386-FaYs8e/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-i386-FaYs8e/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-i386-FaYs8e/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides/r-bioc-edger; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-edger.substvars
+dh_installdirs -pr-bioc-edger
+chmod 644 debian/r-bioc-edger/usr/lib/R/site-library/edgeR/doc/*
+dh_installdocs -pr-bioc-edger
+ install -g 0 -o 0 -d debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-i386-FaYs8e/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/doc/r-bioc-edger \;
+ cp -a debian/README.test debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ chown -R 0:0 debian/r-bioc-edger/usr/share/doc
+ chmod -R go=rX debian/r-bioc-edger/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-edger/usr/share/doc
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-edger/usr/share/doc/r-bioc-edger/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-edger/usr/share/doc/r-bioc-edger/copyright
+dh_installexamples -pr-bioc-edger
+dh_installman -pr-bioc-edger
+dh_installinfo -pr-bioc-edger
+dh_installmenu -pr-bioc-edger
+dh_installcron -pr-bioc-edger
+dh_installinit -pr-bioc-edger
+dh_installdebconf -pr-bioc-edger
+ install -o 0 -g 0 -d debian/r-bioc-edger/DEBIAN
+dh_installemacsen -pr-bioc-edger
+dh_installcatalogs -pr-bioc-edger
+ grep -s -v '^misc:Depends=' debian/r-bioc-edger.substvars > debian/r-bioc-edger.substvars.new || true
+ mv debian/r-bioc-edger.substvars.new debian/r-bioc-edger.substvars
+dh_installpam -pr-bioc-edger
+dh_installlogrotate -pr-bioc-edger
+dh_installlogcheck -pr-bioc-edger
+dh_installchangelogs -pr-bioc-edger
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-edger/usr/share/doc/r-bioc-edger/changelog.Debian
+dh_installudev -pr-bioc-edger
+dh_lintian -pr-bioc-edger
+dh_bugfiles -pr-bioc-edger
+dh_install -pr-bioc-edger
+dh_link -pr-bioc-edger
+dh_installmime -pr-bioc-edger
+dh_installgsettings -pr-bioc-edger
+dh_strip -pr-bioc-edger
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dh_compress -pr-bioc-edger
+ cd debian/r-bioc-edger
+ chmod a-x usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save usr/share/doc/r-bioc-edger/changelog.Debian
+ gzip -9nf usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save usr/share/doc/r-bioc-edger/changelog.Debian
+ cd '/build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-i386-FaYs8e/r-bioc-edger-3.2.3~dfsg'
+dh_fixperms -pr-bioc-edger
+ find debian/r-bioc-edger -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-edger ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-edger/usr/share/doc -type f ! -regex 'debian/r-bioc-edger/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-edger/usr/share/man debian/r-bioc-edger/usr/man/ debian/r-bioc-edger/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/lib/perl5 debian/r-bioc-edger/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-edger/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
+dh_makeshlibs -pr-bioc-edger
+ rm -f debian/r-bioc-edger/DEBIAN/shlibs
+dh_installdeb -pr-bioc-edger
+dh_perl -pr-bioc-edger
+dh_shlibdeps -pr-bioc-edger
+ dpkg-shlibdeps -Tdebian/r-bioc-edger.substvars debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so was not linked against libquadmath.so.0 (it uses none of the library's symbols)
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so was not linked against libgfortran.so.3 (it uses none of the library's symbols)
+dh_gencontrol -pr-bioc-edger
+ echo misc:Depends= >> debian/r-bioc-edger.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-edger.substvars -Pdebian/r-bioc-edger
+ chmod 644 debian/r-bioc-edger/DEBIAN/control
+ chown 0:0 debian/r-bioc-edger/DEBIAN/control
+dh_md5sums -pr-bioc-edger
+ (cd debian/r-bioc-edger >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-edger/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-edger/DEBIAN/md5sums
+dh_builddeb -pr-bioc-edger -- -Z xz
+ dpkg-deb -Z xz --build debian/r-bioc-edger ..
+dpkg-deb: building package `r-bioc-edger' in `../r-bioc-edger_3.2.3~dfsg-1_kfreebsd-i386.deb'.
+ dpkg-genchanges -B -mkfreebsd-i386 Build Daemon (fils) <buildd_kfreebsd-i386-fils at buildd.debian.org> >../r-bioc-edger_3.2.3~dfsg-1_kfreebsd-i386.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20130517-1358
+
+r-bioc-edger_3.2.3~dfsg-1_kfreebsd-i386.changes:
+Format: 1.8
+Date: Fri, 17 May 2013 14:36:51 +0200
+Source: r-bioc-edger
+Binary: r-bioc-edger
+Architecture: kfreebsd-i386
+Version: 3.2.3~dfsg-1
+Distribution: sid
+Urgency: low
+Maintainer: kfreebsd-i386 Build Daemon (fils) <buildd_kfreebsd-i386-fils at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
+Description:
+ r-bioc-edger - Empirical analysis of digital gene expression data in R
+Changes:
+ r-bioc-edger (3.2.3~dfsg-1) unstable; urgency=low
+ .
+ [ Charles Plessy ]
+ 74f1a5f Imported Upstream version 2.6.10~dfsg
+ d2d70ab Corrected VCS URLs.
+ 44c9d4e Regression tests for autopkgtest.
+ .
+ [ Andreas Tille ]
+ * Imported new upstream version 3.2.3~dfsg
+ * debian/control
+ - Added myself as Uploader
+ - Add ${shlibs:Depends} to ensure dependency from libc
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - normalised format
+ - Removed unneeded Pre-Depends: dpkg (>= 1.15.6)
+ - Removed versioned dependency of r-base-dev
+ - Package is "Architecture: any" (rather than all)
+ * debian/source/format: Add explicit source format specification
+ * debian/copyright:
+ - Update Source location
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - Add years to Copyright field
+ * debian/upstream: inst/CITATION asks for citing this more recent
+ paper that is now on top of debian/upstream
+ * debian/rules: remove executable flag from installed documentation
+Checksums-Sha1:
+ 6e111db1421ce11fb69c73b3fb9c8856f75d2093 1366106 r-bioc-edger_3.2.3~dfsg-1_kfreebsd-i386.deb
+Checksums-Sha256:
+ 7004dfec29d4a66a786111f252b6fa33a432584c7f4c7e1e59e25995c43ca416 1366106 r-bioc-edger_3.2.3~dfsg-1_kfreebsd-i386.deb
+Files:
+ 0229a53eb571dbfd7dc704c82cbf2813 1366106 gnu-r optional r-bioc-edger_3.2.3~dfsg-1_kfreebsd-i386.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-edger_3.2.3~dfsg-1_kfreebsd-i386.deb
+───────────────────────────────────────────
+
+ new debian package, version 2.0.
+ size 1366106 bytes: control archive= 1869 bytes.
+ 990 bytes, 17 lines control
+ 2932 bytes, 38 lines md5sums
+ Package: r-bioc-edger
+ Version: 3.2.3~dfsg-1
+ Architecture: kfreebsd-i386
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 2412
+ Depends: r-base-core (>= 3.0.0-2), r-bioc-limma, libblas3 | libblas.so.3 | libatlas3-base, libc0.1 (>= 2.3), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3), liblapack3 | liblapack.so.3 | libatlas3-base, libquadmath0 (>= 4.6), libstdc++6 (>= 4.2.1)
+ Suggests: r-cran-mass
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
+ Description: Empirical analysis of digital gene expression data in R
+ Bioconductor package for differential expression analysis of whole
+ transcriptome sequencing (RNA-seq) and digital gene expression
+ profiles with biological replication. It uses empirical Bayes
+ estimation and exact tests based on the negative binomial
+ distribution. It is also useful for differential signal analysis with
+ other types of genome-scale count data.
+
+drwxr-xr-x root/root 0 2013-05-17 13:58 ./
+drwxr-xr-x root/root 0 2013-05-17 13:58 ./usr/
+drwxr-xr-x root/root 0 2013-05-17 13:58 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-17 13:58 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-17 13:58 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/
+-rw-r--r-- root/root 804 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/NAMESPACE
+-rw-r--r-- root/root 1109 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/DESCRIPTION
+drwxr-xr-x root/root 0 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/Meta/
+-rw-r--r-- root/root 987 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/Meta/package.rds
+-rw-r--r-- root/root 3636 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/Meta/Rd.rds
+-rw-r--r-- root/root 3470 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/Meta/hsearch.rds
+-rw-r--r-- root/root 1637 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/Meta/links.rds
+-rw-r--r-- root/root 157 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/Meta/data.rds
+-rw-r--r-- root/root 225 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/Meta/vignette.rds
+-rw-r--r-- root/root 365 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/libs/
+-rw-r--r-- root/root 41532 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/libs/edgeR.so
+drwxr-xr-x root/root 0 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/R/
+-rw-r--r-- root/root 1056 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/R/edgeR
+-rw-r--r-- root/root 115688 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/R/edgeR.rdb
+-rw-r--r-- root/root 2309 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/R/edgeR.rdx
+drwxr-xr-x root/root 0 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/data/
+-rw-r--r-- root/root 248500 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/data/NC1.txt
+-rw-r--r-- root/root 228426 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/data/NC2.txt
+-rw-r--r-- root/root 318545 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/data/Tu102.txt
+-rw-r--r-- root/root 263571 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/data/Tu98.txt
+-rw-r--r-- root/root 19 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/data/datalist
+drwxr-xr-x root/root 0 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/doc/
+-rw-r--r-- root/root 1826 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/doc/edgeR.Rnw
+-rw-r--r-- root/root 49354 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/doc/edgeR.pdf
+-rw-r--r-- root/root 879697 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/doc/edgeRUsersGuide.pdf
+-rw-r--r-- root/root 691 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/doc/index.html
+-rw-r--r-- root/root 2057 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/CITATION
+-rw-r--r-- root/root 13746 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/NEWS.Rd
+drwxr-xr-x root/root 0 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/help/
+-rw-r--r-- root/root 802 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/help/paths.rds
+-rw-r--r-- root/root 231157 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/help/edgeR.rdb
+-rw-r--r-- root/root 1746 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/help/edgeR.rdx
+-rw-r--r-- root/root 3776 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/help/AnIndex
+-rw-r--r-- root/root 1338 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/help/aliases.rds
+drwxr-xr-x root/root 0 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/html/
+-rw-r--r-- root/root 22781 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/html/00Index.html
+-rw-r--r-- root/root 1179 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/html/R.css
+-rw-r--r-- root/root 6834 2013-05-17 13:58 ./usr/lib/R/site-library/edgeR/INDEX
+drwxr-xr-x root/root 0 2013-05-17 13:58 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-17 13:58 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-17 13:58 ./usr/share/doc/r-bioc-edger/
+drwxr-xr-x root/root 0 2013-05-17 13:58 ./usr/share/doc/r-bioc-edger/tests/
+-rw-r--r-- root/root 1392 2013-04-03 22:17 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R.gz
+-rw-r--r-- root/root 5706 2013-04-08 00:02 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save.gz
+-rw-r--r-- root/root 816 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.test
+-rw-r--r-- root/root 274 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.Debian
+-rw-r--r-- root/root 1404 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/copyright
+-rw-r--r-- root/root 1384 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/changelog.Debian.gz
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-ki-sbuild-1368799034-3009/build/buildd-r-bioc-edger_3.2.3~dfsg-1-kfreebsd-i386-FaYs8e
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: kfreebsd-i386
+Build-Space: 6726
+Build-Time: 23
+Distribution: sid
+Install-Time: 36
+Job: r-bioc-edger_3.2.3~dfsg-1
+Package: r-bioc-edger
+Package-Time: 95
+Source-Version: 3.2.3~dfsg-1
+Space: 6726
+Status: successful
+Version: 3.2.3~dfsg-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20130517-1358
+Build needed 00:01:35, 6726k disc space
+Signature with key '52E1CE73' requested:
diff --git a/mips.log b/mips.log
new file mode 100644
index 0000000..33a653a
--- /dev/null
+++ b/mips.log
@@ -0,0 +1,1834 @@
+From buildd at lucatelli.debian.org Sat May 18 15:27:00 2013
+Return-path: <buildd at lucatelli.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at lucatelli.debian.org>)
+ id 1Udj2B-0006zC-HC
+ for logs at buildd.debian.org; Sat, 18 May 2013 15:27:00 +0000
+Received: from lucatelli.debian.org ([2607:f8f0:610:4000:2e0:98ff:fe00:4141])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=lucatelli.debian.org,
+ EMAIL=hostmaster at lucatelli.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at lucatelli.debian.org>)
+ id 1Udj29-0001Md-VM
+ for logs at buildd.debian.org; Sat, 18 May 2013 15:26:58 +0000
+Received: from buildd by lucatelli.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at lucatelli.debian.org>) id 1UdifE-00060b-Hu
+ for logs at buildd.debian.org; Sat, 18 May 2013 15:03:16 +0000
+Date: Sat, 18 May 2013 15:03:16 +0000
+Message-Id: <E1UdifE-00060b-Hu at lucatelli.debian.org>
+From: buildd on lucatelli <buildd at lucatelli.debian.org>
+To: logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-edger_3.2.3~dfsg-1 on mips
+ (dist=sid)
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on lucatelli.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-edger 3.2.3~dfsg-1 (mips) 18 mai 2013 14:49 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-edger
+Version: 3.2.3~dfsg-1
+Source Version: 3.2.3~dfsg-1
+Architecture: mips
+Get:1 http://incoming.debian.org unstable InRelease [205 kB]
+Get:2 http://mirror-ubc.debian.org unstable InRelease [205 kB]
+Get:3 http://incoming.debian.org buildd-unstable InRelease [111 kB]
+Get:4 http://incoming.debian.org unstable/main Sources [6723 kB]
+Get:5 http://mirror-ubc.debian.org unstable/main Sources [6713 kB]
+Get:6 http://mirror-ubc.debian.org unstable/contrib Sources [53.4 kB]
+Get:7 http://mirror-ubc.debian.org unstable/non-free Sources [103 kB]
+Get:8 http://mirror-ubc.debian.org unstable/main mips Packages [6199 kB]
+Get:9 http://incoming.debian.org unstable/contrib Sources [54.2 kB]
+Get:10 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:11 http://incoming.debian.org unstable/main mips Packages [6199 kB]
+Get:12 http://incoming.debian.org unstable/contrib mips Packages [37.7 kB]
+Get:13 http://incoming.debian.org buildd-unstable/main Sources [105 kB]
+Get:14 http://incoming.debian.org buildd-unstable/contrib Sources [2127 B]
+Get:15 http://incoming.debian.org buildd-unstable/non-free Sources [1345 B]
+Get:16 http://incoming.debian.org buildd-unstable/main mips Packages [60.2 kB]
+Get:17 http://incoming.debian.org buildd-unstable/contrib mips Packages [665 B]
+Get:18 http://mirror-ubc.debian.org unstable/contrib mips Packages [37.4 kB]
+Fetched 26.9 MB in 1min 59s (226 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-edger' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/debian-med/r-bioc-edger.git
+Need to get 1218 kB of source archives.
+Get:1 http://mirror-ubc.debian.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (dsc) [1445 B]
+Get:2 http://mirror-ubc.debian.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (tar) [1212 kB]
+Get:3 http://mirror-ubc.debian.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (diff) [4311 B]
+Fetched 1218 kB in 0s (1230 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.6)
+fakeroot: already installed (1.19-2)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-edger build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev, r-bioc-limma
+Checking for already installed dependencies...
+base-files: already installed (7.2)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2+dfsg-1)
+bsdutils: already installed (1:2.20.1-5.4)
+coreutils: already installed (8.20-3)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1.1)
+findutils: already installed (4.4.2-5)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+libc-bin: already installed (2.17-2)
+login: already installed (1:4.1.5.1-1)
+mount: already installed (2.20.1-5.4)
+ncurses-base: already installed (5.9+20130504-1)
+ncurses-bin: already installed (5.9+20130504-1)
+perl-base: already installed (5.14.2-21)
+sed: already installed (4.2.2-1)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-5)
+util-linux: already installed (2.20.1-5.4)
+libc6-dev: already installed (2.17-2)
+gcc: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
+debhelper: missing
+Using default version 9.20130516
+cdbs: missing
+r-base-dev: missing
+r-bioc-limma: missing
+Checking for dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev r-bioc-limma
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ bsdmainutils file fontconfig fontconfig-config fonts-dejavu-core gettext
+ gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
+ libasprintf-dev libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6
+ libgettextpo-dev libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 libx11-6
+ libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
+ libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
+ tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation devscripts dh-make gettext-doc
+ gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
+ libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base
+ texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
+ texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
+ texlive-latex-extra texinfo texi2html tcl-tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
+ xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
+ x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper file fontconfig fontconfig-config
+ fonts-dejavu-core gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libasprintf-dev libasprintf0c2 libblas-dev
+ libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi6
+ libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0 libgfortran3
+ libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3
+ libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
+ libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff5
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core r-base-dev r-bioc-limma tcl8.5 tk8.5
+ ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+0 upgraded, 82 newly installed, 0 to remove and 5 not upgraded.
+Need to get 58.3 MB of archives.
+After this operation, 124 MB of additional disk space will be used.
+Get:1 http://mirror-ubc.debian.org/debian/ unstable/main libpipeline1 mips 1.2.3-1 [37.7 kB]
+Get:2 http://mirror-ubc.debian.org/debian/ unstable/main groff-base mips 1.22.2-2 [708 kB]
+Get:3 http://mirror-ubc.debian.org/debian/ unstable/main bsdmainutils mips 9.0.5 [210 kB]
+Get:4 http://mirror-ubc.debian.org/debian/ unstable/main man-db mips 2.6.3-6 [868 kB]
+Get:5 http://mirror-ubc.debian.org/debian/ unstable/main libasprintf0c2 mips 0.18.1.1-10 [27.1 kB]
+Get:6 http://mirror-ubc.debian.org/debian/ unstable/main libmagic1 mips 1:5.14-1 [216 kB]
+Get:7 http://mirror-ubc.debian.org/debian/ unstable/main libxml2 mips 2.8.0+dfsg1-7+nmu1 [870 kB]
+Get:8 http://mirror-ubc.debian.org/debian/ unstable/main libexpat1 mips 2.1.0-3 [145 kB]
+Get:9 http://mirror-ubc.debian.org/debian/ unstable/main libfreetype6 mips 2.4.9-1.1 [433 kB]
+Get:10 http://mirror-ubc.debian.org/debian/ unstable/main ucf all 3.0025+nmu3 [70.8 kB]
+Get:11 http://mirror-ubc.debian.org/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
+Get:12 http://mirror-ubc.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
+Get:13 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:14 http://mirror-ubc.debian.org/debian/ unstable/main libfontconfig1 mips 2.9.0-7.1 [302 kB]
+Get:15 http://mirror-ubc.debian.org/debian/ unstable/main libpixman-1-0 mips 0.26.0-4 [383 kB]
+Get:16 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-0 mips 1.2.49-4 [184 kB]
+Get:17 http://mirror-ubc.debian.org/debian/ unstable/main libxau6 mips 1:1.0.7-1 [18.3 kB]
+Get:18 http://mirror-ubc.debian.org/debian/ unstable/main libxdmcp6 mips 1:1.1.1-1 [25.5 kB]
+Get:19 http://mirror-ubc.debian.org/debian/ unstable/main libxcb1 mips 1.8.1-2 [41.6 kB]
+Get:20 http://mirror-ubc.debian.org/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:21 http://mirror-ubc.debian.org/debian/ unstable/main libx11-6 mips 2:1.5.0-1 [870 kB]
+Get:22 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-render0 mips 1.8.1-2 [16.3 kB]
+Get:23 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-shm0 mips 1.8.1-2 [10.1 kB]
+Get:24 http://mirror-ubc.debian.org/debian/ unstable/main libxext6 mips 2:1.3.1-2 [51.4 kB]
+Get:25 http://mirror-ubc.debian.org/debian/ unstable/main libxrender1 mips 1:0.9.7-1 [30.6 kB]
+Get:26 http://mirror-ubc.debian.org/debian/ unstable/main libcairo2 mips 1.12.14-4 [1012 kB]
+Get:27 http://mirror-ubc.debian.org/debian/ unstable/main libffi6 mips 3.0.13-4 [19.9 kB]
+Get:28 http://mirror-ubc.debian.org/debian/ unstable/main libglib2.0-0 mips 2.36.1-2build1 [1891 kB]
+Get:29 http://mirror-ubc.debian.org/debian/ unstable/main libcroco3 mips 0.6.8-2 [119 kB]
+Get:30 http://mirror-ubc.debian.org/debian/ unstable/main libdatrie1 mips 0.2.6-2 [29.1 kB]
+Get:31 http://mirror-ubc.debian.org/debian/ unstable/main libunistring0 mips 0.9.3-5 [411 kB]
+Get:32 http://mirror-ubc.debian.org/debian/ unstable/main libgettextpo0 mips 0.18.1.1-10 [140 kB]
+Get:33 http://mirror-ubc.debian.org/debian/ unstable/main libgfortran3 mips 4.8.0-7 [237 kB]
+Get:34 http://mirror-ubc.debian.org/debian/ unstable/main x11-common all 1:7.7+3 [284 kB]
+Get:35 http://mirror-ubc.debian.org/debian/ unstable/main libice6 mips 2:1.0.8-2 [56.5 kB]
+Get:36 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg8 mips 8d-1 [146 kB]
+Get:37 http://mirror-ubc.debian.org/debian/ unstable/main libthai-data all 0.1.19-2 [156 kB]
+Get:38 http://mirror-ubc.debian.org/debian/ unstable/main libthai0 mips 0.1.19-2 [41.4 kB]
+Get:39 http://mirror-ubc.debian.org/debian/ unstable/main libxft2 mips 2.3.1-1 [59.8 kB]
+Get:40 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig mips 2.9.0-7.1 [347 kB]
+Get:41 http://mirror-ubc.debian.org/debian/ unstable/main libpango1.0-0 mips 1.30.0-1 [440 kB]
+Get:42 http://mirror-ubc.debian.org/debian/ unstable/main libpaper1 mips 1.1.24+nmu2 [21.5 kB]
+Get:43 http://mirror-ubc.debian.org/debian/ unstable/main libpcrecpp0 mips 1:8.31-2 [128 kB]
+Get:44 http://mirror-ubc.debian.org/debian/ unstable/main libsm6 mips 2:1.2.1-2 [32.6 kB]
+Get:45 http://mirror-ubc.debian.org/debian/ unstable/main libjbig0 mips 2.0-2 [32.5 kB]
+Get:46 http://mirror-ubc.debian.org/debian/ unstable/main libtiff5 mips 4.0.2-6 [229 kB]
+Get:47 http://mirror-ubc.debian.org/debian/ unstable/main libxss1 mips 1:1.2.2-1 [17.3 kB]
+Get:48 http://mirror-ubc.debian.org/debian/ unstable/main libxt6 mips 1:1.1.3-1 [192 kB]
+Get:49 http://mirror-ubc.debian.org/debian/ unstable/main file mips 1:5.14-1 [53.8 kB]
+Get:50 http://mirror-ubc.debian.org/debian/ unstable/main gettext-base mips 0.18.1.1-10 [141 kB]
+Get:51 http://mirror-ubc.debian.org/debian/ unstable/main cdbs all 0.4.121 [80.5 kB]
+Get:52 http://mirror-ubc.debian.org/debian/ unstable/main html2text mips 1.3.2a-15 [103 kB]
+Get:53 http://mirror-ubc.debian.org/debian/ unstable/main libasprintf-dev mips 0.18.1.1-10 [26.9 kB]
+Get:54 http://mirror-ubc.debian.org/debian/ unstable/main libgettextpo-dev mips 0.18.1.1-10 [189 kB]
+Get:55 http://mirror-ubc.debian.org/debian/ unstable/main gettext mips 0.18.1.1-10 [1753 kB]
+Get:56 http://mirror-ubc.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:57 http://mirror-ubc.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:58 http://mirror-ubc.debian.org/debian/ unstable/main debhelper all 9.20130516 [708 kB]
+Get:59 http://mirror-ubc.debian.org/debian/ unstable/main gfortran-4.6 mips 4.6.4-2 [4302 kB]
+Get:60 http://mirror-ubc.debian.org/debian/ unstable/main gfortran mips 4:4.6.3-8 [1136 B]
+Get:61 http://mirror-ubc.debian.org/debian/ unstable/main libblas3 mips 1.2.20110419-5 [201 kB]
+Get:62 http://mirror-ubc.debian.org/debian/ unstable/main libblas-dev mips 1.2.20110419-5 [241 kB]
+Get:63 http://mirror-ubc.debian.org/debian/ unstable/main libbz2-dev mips 1.0.6-4 [37.2 kB]
+Get:64 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg8-dev mips 8d-1 [258 kB]
+Get:65 http://mirror-ubc.debian.org/debian/ unstable/main liblapack3 mips 3.4.2+dfsg-1 [4361 kB]
+Get:66 http://mirror-ubc.debian.org/debian/ unstable/main liblapack-dev mips 3.4.2+dfsg-1 [5141 kB]
+Get:67 http://mirror-ubc.debian.org/debian/ unstable/main libtinfo-dev mips 5.9+20130504-1 [108 kB]
+Get:68 http://mirror-ubc.debian.org/debian/ unstable/main libncurses5-dev mips 5.9+20130504-1 [226 kB]
+Get:69 http://mirror-ubc.debian.org/debian/ unstable/main libpaper-utils mips 1.1.24+nmu2 [18.3 kB]
+Get:70 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3-dev mips 1:8.31-2 [367 kB]
+Get:71 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g-dev mips 1:1.2.8.dfsg-1 [217 kB]
+Get:72 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-dev mips 1.2.49-4 [275 kB]
+Get:73 http://mirror-ubc.debian.org/debian/ unstable/main libreadline6-dev mips 6.2+dfsg-0.1 [198 kB]
+Get:74 http://mirror-ubc.debian.org/debian/ unstable/main libreadline-dev mips 6.2+dfsg-0.1 [894 B]
+Get:75 http://mirror-ubc.debian.org/debian/ unstable/main zip mips 3.0-7 [332 kB]
+Get:76 http://mirror-ubc.debian.org/debian/ unstable/main unzip mips 6.0-9 [189 kB]
+Get:77 http://mirror-ubc.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:78 http://mirror-ubc.debian.org/debian/ unstable/main tcl8.5 mips 8.5.11-2 [1617 kB]
+Get:79 http://mirror-ubc.debian.org/debian/ unstable/main tk8.5 mips 8.5.11-2 [1175 kB]
+Get:80 http://mirror-ubc.debian.org/debian/ unstable/main r-base-core mips 3.0.1-1 [21.0 MB]
+Get:81 http://mirror-ubc.debian.org/debian/ unstable/main r-base-dev all 3.0.1-1 [3896 B]
+Get:82 http://mirror-ubc.debian.org/debian/ unstable/main r-bioc-limma mips 3.16.3~dfsg-1 [1616 kB]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 58.3 MB in 45s (1293 kB/s)
+Selecting previously unselected package libpipeline1:mips.
+(Reading database ... 10865 files and directories currently installed.)
+Unpacking libpipeline1:mips (from .../libpipeline1_1.2.3-1_mips.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.22.2-2_mips.deb) ...
+Selecting previously unselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_mips.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.3-6_mips.deb) ...
+Selecting previously unselected package libasprintf0c2:mips.
+Unpacking libasprintf0c2:mips (from .../libasprintf0c2_0.18.1.1-10_mips.deb) ...
+Selecting previously unselected package libmagic1:mips.
+Unpacking libmagic1:mips (from .../libmagic1_1%3a5.14-1_mips.deb) ...
+Selecting previously unselected package libxml2:mips.
+Unpacking libxml2:mips (from .../libxml2_2.8.0+dfsg1-7+nmu1_mips.deb) ...
+Selecting previously unselected package libexpat1:mips.
+Unpacking libexpat1:mips (from .../libexpat1_2.1.0-3_mips.deb) ...
+Selecting previously unselected package libfreetype6:mips.
+Unpacking libfreetype6:mips (from .../libfreetype6_2.4.9-1.1_mips.deb) ...
+Selecting previously unselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ...
+Moving old data out of the way
+Selecting previously unselected package fonts-dejavu-core.
+Unpacking fonts-dejavu-core (from .../fonts-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ...
+Selecting previously unselected package libfontconfig1:mips.
+Unpacking libfontconfig1:mips (from .../libfontconfig1_2.9.0-7.1_mips.deb) ...
+Selecting previously unselected package libpixman-1-0:mips.
+Unpacking libpixman-1-0:mips (from .../libpixman-1-0_0.26.0-4_mips.deb) ...
+Selecting previously unselected package libpng12-0:mips.
+Unpacking libpng12-0:mips (from .../libpng12-0_1.2.49-4_mips.deb) ...
+Selecting previously unselected package libxau6:mips.
+Unpacking libxau6:mips (from .../libxau6_1%3a1.0.7-1_mips.deb) ...
+Selecting previously unselected package libxdmcp6:mips.
+Unpacking libxdmcp6:mips (from .../libxdmcp6_1%3a1.1.1-1_mips.deb) ...
+Selecting previously unselected package libxcb1:mips.
+Unpacking libxcb1:mips (from .../libxcb1_1.8.1-2_mips.deb) ...
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ...
+Selecting previously unselected package libx11-6:mips.
+Unpacking libx11-6:mips (from .../libx11-6_2%3a1.5.0-1_mips.deb) ...
+Selecting previously unselected package libxcb-render0:mips.
+Unpacking libxcb-render0:mips (from .../libxcb-render0_1.8.1-2_mips.deb) ...
+Selecting previously unselected package libxcb-shm0:mips.
+Unpacking libxcb-shm0:mips (from .../libxcb-shm0_1.8.1-2_mips.deb) ...
+Selecting previously unselected package libxext6:mips.
+Unpacking libxext6:mips (from .../libxext6_2%3a1.3.1-2_mips.deb) ...
+Selecting previously unselected package libxrender1:mips.
+Unpacking libxrender1:mips (from .../libxrender1_1%3a0.9.7-1_mips.deb) ...
+Selecting previously unselected package libcairo2:mips.
+Unpacking libcairo2:mips (from .../libcairo2_1.12.14-4_mips.deb) ...
+Selecting previously unselected package libffi6:mips.
+Unpacking libffi6:mips (from .../libffi6_3.0.13-4_mips.deb) ...
+Selecting previously unselected package libglib2.0-0:mips.
+Unpacking libglib2.0-0:mips (from .../libglib2.0-0_2.36.1-2build1_mips.deb) ...
+Selecting previously unselected package libcroco3:mips.
+Unpacking libcroco3:mips (from .../libcroco3_0.6.8-2_mips.deb) ...
+Selecting previously unselected package libdatrie1:mips.
+Unpacking libdatrie1:mips (from .../libdatrie1_0.2.6-2_mips.deb) ...
+Selecting previously unselected package libunistring0:mips.
+Unpacking libunistring0:mips (from .../libunistring0_0.9.3-5_mips.deb) ...
+Selecting previously unselected package libgettextpo0:mips.
+Unpacking libgettextpo0:mips (from .../libgettextpo0_0.18.1.1-10_mips.deb) ...
+Selecting previously unselected package libgfortran3:mips.
+Unpacking libgfortran3:mips (from .../libgfortran3_4.8.0-7_mips.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.7+3_all.deb) ...
+Selecting previously unselected package libice6:mips.
+Unpacking libice6:mips (from .../libice6_2%3a1.0.8-2_mips.deb) ...
+Selecting previously unselected package libjpeg8:mips.
+Unpacking libjpeg8:mips (from .../libjpeg8_8d-1_mips.deb) ...
+Selecting previously unselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.19-2_all.deb) ...
+Selecting previously unselected package libthai0:mips.
+Unpacking libthai0:mips (from .../libthai0_0.1.19-2_mips.deb) ...
+Selecting previously unselected package libxft2:mips.
+Unpacking libxft2:mips (from .../libxft2_2.3.1-1_mips.deb) ...
+Selecting previously unselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_mips.deb) ...
+Selecting previously unselected package libpango1.0-0:mips.
+Unpacking libpango1.0-0:mips (from .../libpango1.0-0_1.30.0-1_mips.deb) ...
+Selecting previously unselected package libpaper1:mips.
+Unpacking libpaper1:mips (from .../libpaper1_1.1.24+nmu2_mips.deb) ...
+Selecting previously unselected package libpcrecpp0:mips.
+Unpacking libpcrecpp0:mips (from .../libpcrecpp0_1%3a8.31-2_mips.deb) ...
+Selecting previously unselected package libsm6:mips.
+Unpacking libsm6:mips (from .../libsm6_2%3a1.2.1-2_mips.deb) ...
+Selecting previously unselected package libjbig0:mips.
+Unpacking libjbig0:mips (from .../libjbig0_2.0-2_mips.deb) ...
+Selecting previously unselected package libtiff5:mips.
+Unpacking libtiff5:mips (from .../libtiff5_4.0.2-6_mips.deb) ...
+Selecting previously unselected package libxss1:mips.
+Unpacking libxss1:mips (from .../libxss1_1%3a1.2.2-1_mips.deb) ...
+Selecting previously unselected package libxt6:mips.
+Unpacking libxt6:mips (from .../libxt6_1%3a1.1.3-1_mips.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_1%3a5.14-1_mips.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_mips.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
+Selecting previously unselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_mips.deb) ...
+Selecting previously unselected package libasprintf-dev:mips.
+Unpacking libasprintf-dev:mips (from .../libasprintf-dev_0.18.1.1-10_mips.deb) ...
+Selecting previously unselected package libgettextpo-dev:mips.
+Unpacking libgettextpo-dev:mips (from .../libgettextpo-dev_0.18.1.1-10_mips.deb) ...
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-10_mips.deb) ...
+Selecting previously unselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously unselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_9.20130516_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.4-2_mips.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.3-8_mips.deb) ...
+Selecting previously unselected package libblas3.
+Unpacking libblas3 (from .../libblas3_1.2.20110419-5_mips.deb) ...
+Selecting previously unselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_mips.deb) ...
+Selecting previously unselected package libbz2-dev:mips.
+Unpacking libbz2-dev:mips (from .../libbz2-dev_1.0.6-4_mips.deb) ...
+Selecting previously unselected package libjpeg8-dev:mips.
+Unpacking libjpeg8-dev:mips (from .../libjpeg8-dev_8d-1_mips.deb) ...
+Selecting previously unselected package liblapack3.
+Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_mips.deb) ...
+Selecting previously unselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.4.2+dfsg-1_mips.deb) ...
+Selecting previously unselected package libtinfo-dev:mips.
+Unpacking libtinfo-dev:mips (from .../libtinfo-dev_5.9+20130504-1_mips.deb) ...
+Selecting previously unselected package libncurses5-dev:mips.
+Unpacking libncurses5-dev:mips (from .../libncurses5-dev_5.9+20130504-1_mips.deb) ...
+Selecting previously unselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_mips.deb) ...
+Selecting previously unselected package libpcre3-dev:mips.
+Unpacking libpcre3-dev:mips (from .../libpcre3-dev_1%3a8.31-2_mips.deb) ...
+Selecting previously unselected package zlib1g-dev:mips.
+Unpacking zlib1g-dev:mips (from .../zlib1g-dev_1%3a1.2.8.dfsg-1_mips.deb) ...
+Selecting previously unselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_mips.deb) ...
+Selecting previously unselected package libreadline6-dev:mips.
+Unpacking libreadline6-dev:mips (from .../libreadline6-dev_6.2+dfsg-0.1_mips.deb) ...
+Selecting previously unselected package libreadline-dev:mips.
+Unpacking libreadline-dev:mips (from .../libreadline-dev_6.2+dfsg-0.1_mips.deb) ...
+Selecting previously unselected package zip.
+Unpacking zip (from .../archives/zip_3.0-7_mips.deb) ...
+Selecting previously unselected package unzip.
+Unpacking unzip (from .../archives/unzip_6.0-9_mips.deb) ...
+Selecting previously unselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
+Selecting previously unselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_mips.deb) ...
+Selecting previously unselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_mips.deb) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_3.0.1-1_mips.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_3.0.1-1_all.deb) ...
+Selecting previously unselected package r-bioc-limma.
+Unpacking r-bioc-limma (from .../r-bioc-limma_3.16.3~dfsg-1_mips.deb) ...
+Setting up libpipeline1:mips (1.2.3-1) ...
+Setting up groff-base (1.22.2-2) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.3-6) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:mips (0.18.1.1-10) ...
+Setting up libmagic1:mips (1:5.14-1) ...
+Setting up libxml2:mips (2.8.0+dfsg1-7+nmu1) ...
+Setting up libexpat1:mips (2.1.0-3) ...
+Setting up libfreetype6:mips (2.4.9-1.1) ...
+Setting up ucf (3.0025+nmu3) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:mips (2.9.0-7.1) ...
+Setting up libpixman-1-0:mips (0.26.0-4) ...
+Setting up libpng12-0:mips (1.2.49-4) ...
+Setting up libxau6:mips (1:1.0.7-1) ...
+Setting up libxdmcp6:mips (1:1.1.1-1) ...
+Setting up libxcb1:mips (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:mips (2:1.5.0-1) ...
+Setting up libxcb-render0:mips (1.8.1-2) ...
+Setting up libxcb-shm0:mips (1.8.1-2) ...
+Setting up libxext6:mips (2:1.3.1-2) ...
+Setting up libxrender1:mips (1:0.9.7-1) ...
+Setting up libcairo2:mips (1.12.14-4) ...
+Setting up libffi6:mips (3.0.13-4) ...
+Setting up libglib2.0-0:mips (2.36.1-2build1) ...
+No schema files found: doing nothing.
+Setting up libcroco3:mips (0.6.8-2) ...
+Setting up libdatrie1:mips (0.2.6-2) ...
+Setting up libunistring0:mips (0.9.3-5) ...
+Setting up libgettextpo0:mips (0.18.1.1-10) ...
+Setting up libgfortran3:mips (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6:mips (2:1.0.8-2) ...
+Setting up libjpeg8:mips (8d-1) ...
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:mips (0.1.19-2) ...
+Setting up libxft2:mips (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
+Regenerating fonts cache... done.
+Setting up libpango1.0-0:mips (1.30.0-1) ...
+Setting up libpaper1:mips (1.1.24+nmu2) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpcrecpp0:mips (1:8.31-2) ...
+Setting up libsm6:mips (2:1.2.1-2) ...
+Setting up libjbig0:mips (2.0-2) ...
+Setting up libtiff5:mips (4.0.2-6) ...
+Setting up libxss1:mips (1:1.2.2-1) ...
+Setting up libxt6:mips (1:1.1.3-1) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libasprintf-dev:mips (0.18.1.1-10) ...
+Setting up libgettextpo-dev:mips (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20130516) ...
+Setting up gfortran-4.6 (4.6.4-2) ...
+Setting up gfortran (4:4.6.3-8) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:mips (1.0.6-4) ...
+Setting up libjpeg8-dev:mips (8d-1) ...
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:mips (5.9+20130504-1) ...
+Setting up libncurses5-dev:mips (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:mips (1:8.31-2) ...
+Setting up zlib1g-dev:mips (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:mips (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:mips (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.1-1) ...
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (3.0.1-1) ...
+Setting up r-bioc-limma (3.16.3~dfsg-1) ...
+Processing triggers for libc-bin ...
+ldconfig deferred processing now taking place
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 3.2.0-0.bpo.4-octeon mips (mips64)
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.6_4.6.4-2 gcc-4.6_4.6.4-2 libc6-dev_2.17-2 libstdc++6_4.8.0-7 libstdc++6-4.6-dev_4.6.4-2 linux-libc-dev_3.2.41-2
+Package versions: apt_0.9.8.1 base-files_7.2 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.4 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.20-3 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2 dash_0.5.7-3 debconf_1.5.50 debfoster_2.7-1.2 debhelper_9.20130516 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.19-2 file_1:5.14-1 findutils_4.4.2-5 fontconf [...]
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Fri May 17 13:25:10 2013 UTC using DSA key ID C09FD35A
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-edger_3.2.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-edger in r-bioc-edger-3.2.3~dfsg
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg-1.debian.tar.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: source package r-bioc-edger
+dpkg-buildpackage: source version 3.2.3~dfsg-1
+ dpkg-source --before-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: host architecture mips
+ fakeroot debian/rules clean
+test -x debian/rules
+dh_testroot
+dh_clean
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build-arch
+test -x debian/rules
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+ fakeroot debian/rules binary-arch
+test -x debian/rules
+dh_testroot
+dh_prep
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+dh_installdirs -A
+ install -d debian/r-bioc-edger
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-edger/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 3.0.1-1)" >> debian/r-bioc-edger.substvars
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mips-ichR56/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mips-ichR56/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'edgeR' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-mips-ichR56/r-bioc-edger-3.2.3~dfsg/src'
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c R_exact_test_by_deviance.cpp -o R_exact_test_by_deviance.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c R_loess_by_col.cpp -o R_loess_by_col.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c R_cr_adjust.cpp -o R_cr_adjust.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c R_levenberg.cpp -o R_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c R_maximize_interpolant.cpp -o R_maximize_interpolant.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c R_one_group.cpp -o R_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c R_simple_good_turing.cpp -o R_simple_good_turing.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c core/adj_coxreid.cpp -o core/adj_coxreid.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c core/glm_levenberg.cpp -o core/glm_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c core/glm_one_group.cpp -o core/glm_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c core/interpolator.cpp -o core/interpolator.o
+gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c core/fmm_spline.c -o core/fmm_spline.o
+g++ -shared -o edgeR.so R_exact_test_by_deviance.o R_loess_by_col.o R_cr_adjust.o R_levenberg.o R_maximize_interpolant.o R_one_group.o R_simple_good_turing.o core/adj_coxreid.o core/glm_levenberg.o core/glm_one_group.o core/interpolator.o core/fmm_spline.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-mips-ichR56/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-mips-ichR56/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-mips-ichR56/r-bioc-edger-3.2.3~dfsg/src'
+installing to /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mips-ichR56/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs
+** R
+** data
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices
+** installing vignettes
+** testing if installed package can be loaded
+* DONE (edgeR)
+rm -vf /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mips-ichR56/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mips-ichR56/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/COPYING \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mips-ichR56/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mips-ichR56/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mips-ichR56/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides/r-bioc-edger; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-edger.substvars
+dh_installdirs -pr-bioc-edger
+chmod 644 debian/r-bioc-edger/usr/lib/R/site-library/edgeR/doc/*
+dh_installdocs -pr-bioc-edger
+ install -g 0 -o 0 -d debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mips-ichR56/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/doc/r-bioc-edger \;
+ cp -a debian/README.test debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ chown -R 0:0 debian/r-bioc-edger/usr/share/doc
+ chmod -R go=rX debian/r-bioc-edger/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-edger/usr/share/doc
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-edger/usr/share/doc/r-bioc-edger/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-edger/usr/share/doc/r-bioc-edger/copyright
+dh_installexamples -pr-bioc-edger
+dh_installman -pr-bioc-edger
+dh_installinfo -pr-bioc-edger
+dh_installmenu -pr-bioc-edger
+dh_installcron -pr-bioc-edger
+dh_installinit -pr-bioc-edger
+dh_installdebconf -pr-bioc-edger
+ install -o 0 -g 0 -d debian/r-bioc-edger/DEBIAN
+dh_installemacsen -pr-bioc-edger
+dh_installcatalogs -pr-bioc-edger
+ grep -s -v '^misc:Depends=' debian/r-bioc-edger.substvars > debian/r-bioc-edger.substvars.new || true
+ mv debian/r-bioc-edger.substvars.new debian/r-bioc-edger.substvars
+dh_installpam -pr-bioc-edger
+dh_installlogrotate -pr-bioc-edger
+dh_installlogcheck -pr-bioc-edger
+dh_installchangelogs -pr-bioc-edger
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-edger/usr/share/doc/r-bioc-edger/changelog.Debian
+dh_installudev -pr-bioc-edger
+dh_lintian -pr-bioc-edger
+dh_bugfiles -pr-bioc-edger
+dh_install -pr-bioc-edger
+dh_link -pr-bioc-edger
+dh_installmime -pr-bioc-edger
+dh_installgsettings -pr-bioc-edger
+dh_strip -pr-bioc-edger
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dh_compress -pr-bioc-edger
+ cd debian/r-bioc-edger
+ chmod a-x usr/share/doc/r-bioc-edger/changelog.Debian usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save
+ gzip -9nf usr/share/doc/r-bioc-edger/changelog.Debian usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save
+ cd '/build/buildd-r-bioc-edger_3.2.3~dfsg-1-mips-ichR56/r-bioc-edger-3.2.3~dfsg'
+dh_fixperms -pr-bioc-edger
+ find debian/r-bioc-edger -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-edger ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-edger/usr/share/doc -type f ! -regex 'debian/r-bioc-edger/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-edger/usr/share/man debian/r-bioc-edger/usr/man/ debian/r-bioc-edger/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/lib/perl5 debian/r-bioc-edger/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-edger/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
+dh_makeshlibs -pr-bioc-edger
+ rm -f debian/r-bioc-edger/DEBIAN/shlibs
+dh_installdeb -pr-bioc-edger
+dh_perl -pr-bioc-edger
+dh_shlibdeps -pr-bioc-edger
+ dpkg-shlibdeps -Tdebian/r-bioc-edger.substvars debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so was not linked against libgfortran.so.3 (it uses none of the library's symbols)
+dh_gencontrol -pr-bioc-edger
+ echo misc:Depends= >> debian/r-bioc-edger.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-edger.substvars -Pdebian/r-bioc-edger
+ chmod 644 debian/r-bioc-edger/DEBIAN/control
+ chown 0:0 debian/r-bioc-edger/DEBIAN/control
+dh_md5sums -pr-bioc-edger
+ (cd debian/r-bioc-edger >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-edger/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-edger/DEBIAN/md5sums
+dh_builddeb -pr-bioc-edger -- -Z xz
+ dpkg-deb -Z xz --build debian/r-bioc-edger ..
+dpkg-deb: building package `r-bioc-edger' in `../r-bioc-edger_3.2.3~dfsg-1_mips.deb'.
+ dpkg-genchanges -B -mmips Build Daemon (lucatelli) <buildd_mips-lucatelli at buildd.debian.org> >../r-bioc-edger_3.2.3~dfsg-1_mips.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20130518-1503
+
+r-bioc-edger_3.2.3~dfsg-1_mips.changes:
+Format: 1.8
+Date: Fri, 17 May 2013 14:36:51 +0200
+Source: r-bioc-edger
+Binary: r-bioc-edger
+Architecture: mips
+Version: 3.2.3~dfsg-1
+Distribution: sid
+Urgency: low
+Maintainer: mips Build Daemon (lucatelli) <buildd_mips-lucatelli at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
+Description:
+ r-bioc-edger - Empirical analysis of digital gene expression data in R
+Changes:
+ r-bioc-edger (3.2.3~dfsg-1) unstable; urgency=low
+ .
+ [ Charles Plessy ]
+ 74f1a5f Imported Upstream version 2.6.10~dfsg
+ d2d70ab Corrected VCS URLs.
+ 44c9d4e Regression tests for autopkgtest.
+ .
+ [ Andreas Tille ]
+ * Imported new upstream version 3.2.3~dfsg
+ * debian/control
+ - Added myself as Uploader
+ - Add ${shlibs:Depends} to ensure dependency from libc
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - normalised format
+ - Removed unneeded Pre-Depends: dpkg (>= 1.15.6)
+ - Removed versioned dependency of r-base-dev
+ - Package is "Architecture: any" (rather than all)
+ * debian/source/format: Add explicit source format specification
+ * debian/copyright:
+ - Update Source location
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - Add years to Copyright field
+ * debian/upstream: inst/CITATION asks for citing this more recent
+ paper that is now on top of debian/upstream
+ * debian/rules: remove executable flag from installed documentation
+Checksums-Sha1:
+ 4c0166c4b65a9c5adf624f80743ddbdc4197394c 1365250 r-bioc-edger_3.2.3~dfsg-1_mips.deb
+Checksums-Sha256:
+ 83b65ddfc479901930f21cf35e07c6b1b5beaa6b1a3edad762de998140e960f6 1365250 r-bioc-edger_3.2.3~dfsg-1_mips.deb
+Files:
+ d6427229cdb7d7fb0e933c246a9ed0f7 1365250 gnu-r optional r-bioc-edger_3.2.3~dfsg-1_mips.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-edger_3.2.3~dfsg-1_mips.deb
+──────────────────────────────────
+
+ new debian package, version 2.0.
+ size 1365250 bytes: control archive= 1865 bytes.
+ 956 bytes, 17 lines control
+ 2932 bytes, 38 lines md5sums
+ Package: r-bioc-edger
+ Version: 3.2.3~dfsg-1
+ Architecture: mips
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 2537
+ Depends: r-base-core (>= 3.0.1-1), r-bioc-limma, libblas3 | libblas.so.3 | libatlas3-base, libc6 (>= 2.2), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3), liblapack3 | liblapack.so.3 | libatlas3-base, libstdc++6 (>= 4.1.1)
+ Suggests: r-cran-mass
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
+ Description: Empirical analysis of digital gene expression data in R
+ Bioconductor package for differential expression analysis of whole
+ transcriptome sequencing (RNA-seq) and digital gene expression
+ profiles with biological replication. It uses empirical Bayes
+ estimation and exact tests based on the negative binomial
+ distribution. It is also useful for differential signal analysis with
+ other types of genome-scale count data.
+
+drwxr-xr-x root/root 0 2013-05-18 15:01 ./
+drwxr-xr-x root/root 0 2013-05-18 15:01 ./usr/
+drwxr-xr-x root/root 0 2013-05-18 14:58 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-18 14:58 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-18 15:01 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-18 15:00 ./usr/lib/R/site-library/edgeR/
+-rw-r--r-- root/root 804 2013-05-18 14:58 ./usr/lib/R/site-library/edgeR/NAMESPACE
+-rw-r--r-- root/root 2057 2013-05-18 14:59 ./usr/lib/R/site-library/edgeR/CITATION
+drwxr-xr-x root/root 0 2013-05-18 14:59 ./usr/lib/R/site-library/edgeR/R/
+-rw-r--r-- root/root 116075 2013-05-18 14:59 ./usr/lib/R/site-library/edgeR/R/edgeR.rdb
+-rw-r--r-- root/root 1056 2013-05-18 14:59 ./usr/lib/R/site-library/edgeR/R/edgeR
+-rw-r--r-- root/root 2292 2013-05-18 14:59 ./usr/lib/R/site-library/edgeR/R/edgeR.rdx
+drwxr-xr-x root/root 0 2013-05-18 15:00 ./usr/lib/R/site-library/edgeR/help/
+-rw-r--r-- root/root 3776 2013-05-18 15:00 ./usr/lib/R/site-library/edgeR/help/AnIndex
+-rw-r--r-- root/root 230511 2013-05-18 15:00 ./usr/lib/R/site-library/edgeR/help/edgeR.rdb
+-rw-r--r-- root/root 1342 2013-05-18 15:00 ./usr/lib/R/site-library/edgeR/help/aliases.rds
+-rw-r--r-- root/root 803 2013-05-18 15:00 ./usr/lib/R/site-library/edgeR/help/paths.rds
+-rw-r--r-- root/root 1760 2013-05-18 15:00 ./usr/lib/R/site-library/edgeR/help/edgeR.rdx
+drwxr-xr-x root/root 0 2013-05-18 14:59 ./usr/lib/R/site-library/edgeR/data/
+-rw-r--r-- root/root 318545 2013-05-18 14:59 ./usr/lib/R/site-library/edgeR/data/Tu102.txt
+-rw-r--r-- root/root 228426 2013-05-18 14:59 ./usr/lib/R/site-library/edgeR/data/NC2.txt
+-rw-r--r-- root/root 19 2013-05-18 14:59 ./usr/lib/R/site-library/edgeR/data/datalist
+-rw-r--r-- root/root 248500 2013-05-18 14:59 ./usr/lib/R/site-library/edgeR/data/NC1.txt
+-rw-r--r-- root/root 263571 2013-05-18 14:59 ./usr/lib/R/site-library/edgeR/data/Tu98.txt
+drwxr-xr-x root/root 0 2013-05-18 15:00 ./usr/lib/R/site-library/edgeR/html/
+-rw-r--r-- root/root 1179 2013-05-18 15:00 ./usr/lib/R/site-library/edgeR/html/R.css
+-rw-r--r-- root/root 22781 2013-05-18 15:00 ./usr/lib/R/site-library/edgeR/html/00Index.html
+-rw-r--r-- root/root 13746 2013-05-18 14:59 ./usr/lib/R/site-library/edgeR/NEWS.Rd
+-rw-r--r-- root/root 1111 2013-05-18 14:58 ./usr/lib/R/site-library/edgeR/DESCRIPTION
+drwxr-xr-x root/root 0 2013-05-18 15:00 ./usr/lib/R/site-library/edgeR/doc/
+-rw-r--r-- root/root 1826 2013-05-18 14:59 ./usr/lib/R/site-library/edgeR/doc/edgeR.Rnw
+-rw-r--r-- root/root 49354 2013-05-18 14:59 ./usr/lib/R/site-library/edgeR/doc/edgeR.pdf
+-rw-r--r-- root/root 691 2013-05-18 14:59 ./usr/lib/R/site-library/edgeR/doc/index.html
+-rw-r--r-- root/root 879697 2013-05-18 14:59 ./usr/lib/R/site-library/edgeR/doc/edgeRUsersGuide.pdf
+drwxr-xr-x root/root 0 2013-05-18 15:01 ./usr/lib/R/site-library/edgeR/libs/
+-rw-r--r-- root/root 105040 2013-05-18 15:01 ./usr/lib/R/site-library/edgeR/libs/edgeR.so
+-rw-r--r-- root/root 6834 2013-05-18 15:00 ./usr/lib/R/site-library/edgeR/INDEX
+drwxr-xr-x root/root 0 2013-05-18 15:00 ./usr/lib/R/site-library/edgeR/Meta/
+-rw-r--r-- root/root 161 2013-05-18 15:00 ./usr/lib/R/site-library/edgeR/Meta/data.rds
+-rw-r--r-- root/root 1640 2013-05-18 15:00 ./usr/lib/R/site-library/edgeR/Meta/links.rds
+-rw-r--r-- root/root 228 2013-05-18 15:00 ./usr/lib/R/site-library/edgeR/Meta/vignette.rds
+-rw-r--r-- root/root 993 2013-05-18 14:58 ./usr/lib/R/site-library/edgeR/Meta/package.rds
+-rw-r--r-- root/root 368 2013-05-18 15:00 ./usr/lib/R/site-library/edgeR/Meta/nsInfo.rds
+-rw-r--r-- root/root 3475 2013-05-18 15:00 ./usr/lib/R/site-library/edgeR/Meta/hsearch.rds
+-rw-r--r-- root/root 3639 2013-05-18 15:00 ./usr/lib/R/site-library/edgeR/Meta/Rd.rds
+drwxr-xr-x root/root 0 2013-05-18 15:01 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-18 15:01 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-18 15:01 ./usr/share/doc/r-bioc-edger/
+-rw-r--r-- root/root 1384 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/changelog.Debian.gz
+-rw-r--r-- root/root 1404 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/copyright
+-rw-r--r-- root/root 816 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.test
+drwxr-xr-x root/root 0 2013-05-18 15:01 ./usr/share/doc/r-bioc-edger/tests/
+-rw-r--r-- root/root 5706 2013-04-08 00:02 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save.gz
+-rw-r--r-- root/root 1392 2013-04-03 22:17 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R.gz
+-rw-r--r-- root/root 274 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.Debian
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-mips-sbuild-3d3d9d9d-a974-4e38-9d8d-1aef63cc0477/build/buildd-r-bioc-edger_3.2.3~dfsg-1-mips-ichR56
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: mips
+Build-Space: 6928
+Build-Time: 372
+Distribution: sid
+Install-Time: 256
+Job: r-bioc-edger_3.2.3~dfsg-1
+Package: r-bioc-edger
+Package-Time: 807
+Source-Version: 3.2.3~dfsg-1
+Space: 6928
+Status: successful
+Version: 3.2.3~dfsg-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20130518-1503
+Build needed 00:13:27, 6928k disc space
+Signature with key 'A2DB4074' requested:
+
+From buildd at phrixos.ayous.org Sun May 19 04:18:49 2013
+Return-path: <buildd at phrixos.ayous.org>
+Received: from phrixos.ayous.org ([2001:a60:f006:deb:223:9eff:fe00:f7c]
+ helo=alius.ayous.org)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at phrixos.ayous.org>)
+ id 1Udv4r-0006xY-M5
+ for logs at buildd.debian.org; Sun, 19 May 2013 04:18:48 +0000
+Received: from buildd by phrixos.ayous.org with local (Exim 4.72)
+ (envelope-from <buildd at phrixos.ayous.org>)
+ id 1Udv4L-0007xA-Mv; Sun, 19 May 2013 04:18:01 +0000
+Date: Sun, 19 May 2013 04:18:01 +0000
+Message-Id: <E1Udv4L-0007xA-Mv at phrixos.ayous.org>
+From: buildd on phrixos <buildd at phrixos.ayous.org>
+To: aba+buildd_phrixos at not.so.argh.org,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-edger_3.2.3~dfsg-1 on mipsel
+ (dist=sid)
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on phrixos.ayous.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-edger 3.2.3~dfsg-1 (mipsel) 19 May 2013 04:09 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-edger
+Version: 3.2.3~dfsg-1
+Architecture: mipsel
+Chroot Build Dir: /var/lib/schroot/mount/sid-mipsel-sbuild-3dbe02a6-f490-4402-84c0-399e3cc009b4/build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT
+Start Time: 20130519-0409
+Get:1 http://mirror.ayous.org unstable InRelease [205 kB]
+Get:2 http://mirror.ayous.org unstable/main Sources [8529 kB]
+Get:3 http://mirror.ayous.org unstable/contrib Sources [64.7 kB]
+Get:4 http://mirror.ayous.org unstable/non-free Sources [126 kB]
+Get:5 http://mirror.ayous.org unstable/main mipsel Packages [8220 kB]
+Get:6 http://mirror.ayous.org unstable/contrib mipsel Packages [45.4 kB]
+Fetched 17.2 MB in 1min 15s (229 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-edger' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/debian-med/r-bioc-edger.git
+Need to get 1218 kB of source archives.
+Get:1 http://mirror.ayous.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (dsc) [1445 B]
+Get:2 http://mirror.ayous.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (tar) [1212 kB]
+Get:3 http://mirror.ayous.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (diff) [4311 B]
+Fetched 1218 kB in 4s (274 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+** Using build dependencies supplied by package:
+Build-Depends: debhelper (>= 9), cdbs, r-base-dev, r-bioc-limma
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Checking for already installed source dependencies...
+debhelper: missing
+Using default version 9.20130518
+cdbs: missing
+r-base-dev: missing
+r-bioc-limma: missing
+Checking for source dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev r-bioc-limma
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following package was automatically installed and is no longer required:
+ libmpc2
+Use 'apt-get autoremove' to remove it.
+The following extra packages will be installed:
+ bsdmainutils cpp-4.6 file fontconfig fontconfig-config fonts-dejavu-core
+ g++-4.6 gcc-4.6 gcc-4.6-base gcc-4.8-base gettext gettext-base gfortran
+ gfortran-4.6 groff-base html2text intltool-debian libasprintf-dev
+ libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3
+ libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6 libgcc1
+ libgettextpo-dev libgettextpo0 libgfortran3 libglib2.0-0 libgomp1 libice6
+ libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libmpc3
+ libncurses5 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
+ libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev
+ libthai-data libthai0 libtiff5 libtinfo-dev libtinfo5 libunistring0 libx11-6
+ libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
+ libxft2 libxml2 libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf
+ r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+ zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make
+ g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ libcloog-ppl1 libcloog-ppl0 libppl-c4 libppl12 libppl9 gettext-doc
+ gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
+ libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp
+ libstdc++6-4.6-doc less www-browser libmail-box-perl r-doc-info r-doc-pdf
+ r-mathlib r-base-html texlive-base texlive-latex-base
+ texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
+ texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
+ texi2html tcl-tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
+ libgpm2 xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
+ x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper file fontconfig fontconfig-config
+ fonts-dejavu-core gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libasprintf-dev libasprintf0c2 libblas-dev
+ libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi6
+ libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0 libgfortran3
+ libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3
+ libmagic1 libmpc3 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
+ libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff5
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core r-base-dev r-bioc-limma tcl8.5 tk8.5
+ ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base gcc-4.8-base libgcc1 libgomp1
+ libncurses5 libstdc++6 libstdc++6-4.6-dev libtinfo5 ncurses-bin
+12 upgraded, 83 newly installed, 0 to remove and 20 not upgraded.
+Need to get 73.4 MB of archives.
+After this operation, 121 MB of additional disk space will be used.
+Get:1 http://mirror.ayous.org/debian/ unstable/main libtinfo5 mipsel 5.9+20130504-1 [287 kB]
+Get:2 http://mirror.ayous.org/debian/ unstable/main libncurses5 mipsel 5.9+20130504-1 [99.9 kB]
+Get:3 http://mirror.ayous.org/debian/ unstable/main ncurses-bin mipsel 5.9+20130504-1 [359 kB]
+Get:4 http://mirror.ayous.org/debian/ unstable/main libgomp1 mipsel 4.8.0-7 [28.8 kB]
+Get:5 http://mirror.ayous.org/debian/ unstable/main gcc-4.8-base mipsel 4.8.0-7 [148 kB]
+Get:6 http://mirror.ayous.org/debian/ unstable/main libstdc++6 mipsel 4.8.0-7 [311 kB]
+Get:7 http://mirror.ayous.org/debian/ unstable/main libgcc1 mipsel 1:4.8.0-7 [69.7 kB]
+Get:8 http://mirror.ayous.org/debian/ unstable/main libpipeline1 mipsel 1.2.3-1 [37.4 kB]
+Get:9 http://mirror.ayous.org/debian/ unstable/main groff-base mipsel 1.22.2-2 [712 kB]
+Get:10 http://mirror.ayous.org/debian/ unstable/main bsdmainutils mipsel 9.0.5 [211 kB]
+Get:11 http://mirror.ayous.org/debian/ unstable/main man-db mipsel 2.6.3-6 [871 kB]
+Get:12 http://mirror.ayous.org/debian/ unstable/main libasprintf0c2 mipsel 0.18.1.1-10 [27.1 kB]
+Get:13 http://mirror.ayous.org/debian/ unstable/main libmagic1 mipsel 1:5.14-1 [217 kB]
+Get:14 http://mirror.ayous.org/debian/ unstable/main libxml2 mipsel 2.8.0+dfsg1-7+nmu1 [868 kB]
+Get:15 http://mirror.ayous.org/debian/ unstable/main libexpat1 mipsel 2.1.0-3 [144 kB]
+Get:16 http://mirror.ayous.org/debian/ unstable/main libfreetype6 mipsel 2.4.9-1.1 [434 kB]
+Get:17 http://mirror.ayous.org/debian/ unstable/main ucf all 3.0027 [71.4 kB]
+Get:18 http://mirror.ayous.org/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
+Get:19 http://mirror.ayous.org/debian/ unstable/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
+Get:20 http://mirror.ayous.org/debian/ unstable/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:21 http://mirror.ayous.org/debian/ unstable/main libfontconfig1 mipsel 2.9.0-7.1 [301 kB]
+Get:22 http://mirror.ayous.org/debian/ unstable/main libpixman-1-0 mipsel 0.26.0-4 [383 kB]
+Get:23 http://mirror.ayous.org/debian/ unstable/main libpng12-0 mipsel 1.2.49-4 [185 kB]
+Get:24 http://mirror.ayous.org/debian/ unstable/main libxau6 mipsel 1:1.0.7-1 [18.2 kB]
+Get:25 http://mirror.ayous.org/debian/ unstable/main libxdmcp6 mipsel 1:1.1.1-1 [26.1 kB]
+Get:26 http://mirror.ayous.org/debian/ unstable/main libxcb1 mipsel 1.8.1-2 [41.2 kB]
+Get:27 http://mirror.ayous.org/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:28 http://mirror.ayous.org/debian/ unstable/main libx11-6 mipsel 2:1.5.0-1 [868 kB]
+Get:29 http://mirror.ayous.org/debian/ unstable/main libxcb-render0 mipsel 1.8.1-2 [16.3 kB]
+Get:30 http://mirror.ayous.org/debian/ unstable/main libxcb-shm0 mipsel 1.8.1-2 [10.2 kB]
+Get:31 http://mirror.ayous.org/debian/ unstable/main libxext6 mipsel 2:1.3.1-2 [51.3 kB]
+Get:32 http://mirror.ayous.org/debian/ unstable/main libxrender1 mipsel 1:0.9.7-1 [30.6 kB]
+Get:33 http://mirror.ayous.org/debian/ unstable/main libcairo2 mipsel 1.12.14-4 [1015 kB]
+Get:34 http://mirror.ayous.org/debian/ unstable/main libffi6 mipsel 3.0.13-4 [19.9 kB]
+Get:35 http://mirror.ayous.org/debian/ unstable/main libglib2.0-0 mipsel 2.36.1-2build1 [1906 kB]
+Get:36 http://mirror.ayous.org/debian/ unstable/main libcroco3 mipsel 0.6.8-2 [120 kB]
+Get:37 http://mirror.ayous.org/debian/ unstable/main libdatrie1 mipsel 0.2.6-2 [29.2 kB]
+Get:38 http://mirror.ayous.org/debian/ unstable/main libunistring0 mipsel 0.9.3-5 [407 kB]
+Get:39 http://mirror.ayous.org/debian/ unstable/main libgettextpo0 mipsel 0.18.1.1-10 [140 kB]
+Get:40 http://mirror.ayous.org/debian/ unstable/main libgfortran3 mipsel 4.8.0-7 [237 kB]
+Get:41 http://mirror.ayous.org/debian/ unstable/main x11-common all 1:7.7+3 [284 kB]
+Get:42 http://mirror.ayous.org/debian/ unstable/main libice6 mipsel 2:1.0.8-2 [56.7 kB]
+Get:43 http://mirror.ayous.org/debian/ unstable/main libjpeg8 mipsel 8d-1 [145 kB]
+Get:44 http://mirror.ayous.org/debian/ unstable/main libthai-data all 0.1.19-2 [156 kB]
+Get:45 http://mirror.ayous.org/debian/ unstable/main libthai0 mipsel 0.1.19-2 [41.6 kB]
+Get:46 http://mirror.ayous.org/debian/ unstable/main libxft2 mipsel 2.3.1-1 [59.8 kB]
+Get:47 http://mirror.ayous.org/debian/ unstable/main fontconfig mipsel 2.9.0-7.1 [348 kB]
+Get:48 http://mirror.ayous.org/debian/ unstable/main libpango1.0-0 mipsel 1.30.0-1 [439 kB]
+Get:49 http://mirror.ayous.org/debian/ unstable/main libpaper1 mipsel 1.1.24+nmu2 [21.4 kB]
+Get:50 http://mirror.ayous.org/debian/ unstable/main libpcrecpp0 mipsel 1:8.31-2 [127 kB]
+Get:51 http://mirror.ayous.org/debian/ unstable/main libsm6 mipsel 2:1.2.1-2 [32.5 kB]
+Get:52 http://mirror.ayous.org/debian/ unstable/main libjbig0 mipsel 2.0-2 [32.4 kB]
+Get:53 http://mirror.ayous.org/debian/ unstable/main libtiff5 mipsel 4.0.2-6 [229 kB]
+Get:54 http://mirror.ayous.org/debian/ unstable/main libxss1 mipsel 1:1.2.2-1 [17.3 kB]
+Get:55 http://mirror.ayous.org/debian/ unstable/main libxt6 mipsel 1:1.1.3-1 [192 kB]
+Get:56 http://mirror.ayous.org/debian/ unstable/main libmpc3 mipsel 1.0.1-1 [40.4 kB]
+Get:57 http://mirror.ayous.org/debian/ unstable/main file mipsel 1:5.14-1 [53.9 kB]
+Get:58 http://mirror.ayous.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-10 [148 kB]
+Get:59 http://mirror.ayous.org/debian/ unstable/main cdbs all 0.4.121 [80.5 kB]
+Get:60 http://mirror.ayous.org/debian/ unstable/main libstdc++6-4.6-dev mipsel 4.6.4-2 [1698 kB]
+Get:61 http://mirror.ayous.org/debian/ unstable/main g++-4.6 mipsel 4.6.4-2 [4089 kB]
+Get:62 http://mirror.ayous.org/debian/ unstable/main gcc-4.6 mipsel 4.6.4-2 [3990 kB]
+Get:63 http://mirror.ayous.org/debian/ unstable/main cpp-4.6 mipsel 4.6.4-2 [3713 kB]
+Get:64 http://mirror.ayous.org/debian/ unstable/main gcc-4.6-base mipsel 4.6.4-2 [143 kB]
+Get:65 http://mirror.ayous.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
+Get:66 http://mirror.ayous.org/debian/ unstable/main libasprintf-dev mipsel 0.18.1.1-10 [26.9 kB]
+Get:67 http://mirror.ayous.org/debian/ unstable/main libgettextpo-dev mipsel 0.18.1.1-10 [188 kB]
+Get:68 http://mirror.ayous.org/debian/ unstable/main gettext mipsel 0.18.1.1-10 [1734 kB]
+Get:69 http://mirror.ayous.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:70 http://mirror.ayous.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:71 http://mirror.ayous.org/debian/ unstable/main debhelper all 9.20130518 [708 kB]
+Get:72 http://mirror.ayous.org/debian/ unstable/main gfortran-4.6 mipsel 4.6.4-2 [4314 kB]
+Get:73 http://mirror.ayous.org/debian/ unstable/main gfortran mipsel 4:4.6.3-8 [1142 B]
+Get:74 http://mirror.ayous.org/debian/ unstable/main libblas3 mipsel 1.2.20110419-5 [202 kB]
+Get:75 http://mirror.ayous.org/debian/ unstable/main libblas-dev mipsel 1.2.20110419-5 [241 kB]
+Get:76 http://mirror.ayous.org/debian/ unstable/main libbz2-dev mipsel 1.0.6-4 [37.3 kB]
+Get:77 http://mirror.ayous.org/debian/ unstable/main libjpeg8-dev mipsel 8d-1 [257 kB]
+Get:78 http://mirror.ayous.org/debian/ unstable/main liblapack3 mipsel 3.4.2+dfsg-1 [4388 kB]
+Get:79 http://mirror.ayous.org/debian/ unstable/main liblapack-dev mipsel 3.4.2+dfsg-1 [5139 kB]
+Get:80 http://mirror.ayous.org/debian/ unstable/main libtinfo-dev mipsel 5.9+20130504-1 [105 kB]
+Get:81 http://mirror.ayous.org/debian/ unstable/main libncurses5-dev mipsel 5.9+20130504-1 [226 kB]
+Get:82 http://mirror.ayous.org/debian/ unstable/main libpaper-utils mipsel 1.1.24+nmu2 [18.3 kB]
+Get:83 http://mirror.ayous.org/debian/ unstable/main libpcre3-dev mipsel 1:8.31-2 [365 kB]
+Get:84 http://mirror.ayous.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.8.dfsg-1 [216 kB]
+Get:85 http://mirror.ayous.org/debian/ unstable/main libpng12-dev mipsel 1.2.49-4 [275 kB]
+Get:86 http://mirror.ayous.org/debian/ unstable/main libreadline6-dev mipsel 6.2+dfsg-0.1 [199 kB]
+Get:87 http://mirror.ayous.org/debian/ unstable/main libreadline-dev mipsel 6.2+dfsg-0.1 [896 B]
+Get:88 http://mirror.ayous.org/debian/ unstable/main zip mipsel 3.0-7 [334 kB]
+Get:89 http://mirror.ayous.org/debian/ unstable/main unzip mipsel 6.0-9 [189 kB]
+Get:90 http://mirror.ayous.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:91 http://mirror.ayous.org/debian/ unstable/main tcl8.5 mipsel 8.5.11-2 [1612 kB]
+Get:92 http://mirror.ayous.org/debian/ unstable/main tk8.5 mipsel 8.5.11-2 [1167 kB]
+Get:93 http://mirror.ayous.org/debian/ unstable/main r-base-core mipsel 3.0.1~20130512-1 [21.0 MB]
+Get:94 http://mirror.ayous.org/debian/ unstable/main r-base-dev all 3.0.1~20130512-1 [3910 B]
+Get:95 http://mirror.ayous.org/debian/ unstable/main r-bioc-limma mipsel 3.16.3~dfsg-1 [1618 kB]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 73.4 MB in 1min 47s (682 kB/s)
+(Reading database ... 10873 files and directories currently installed.)
+Preparing to replace libtinfo5:mipsel 5.9-10 (using .../libtinfo5_5.9+20130504-1_mipsel.deb) ...
+Unpacking replacement libtinfo5:mipsel ...
+Setting up libtinfo5:mipsel (5.9+20130504-1) ...
+(Reading database ... 10873 files and directories currently installed.)
+Preparing to replace libncurses5:mipsel 5.9-10 (using .../libncurses5_5.9+20130504-1_mipsel.deb) ...
+Unpacking replacement libncurses5:mipsel ...
+Setting up libncurses5:mipsel (5.9+20130504-1) ...
+(Reading database ... 10873 files and directories currently installed.)
+Preparing to replace ncurses-bin 5.9-10 (using .../ncurses-bin_5.9+20130504-1_mipsel.deb) ...
+Unpacking replacement ncurses-bin ...
+Setting up ncurses-bin (5.9+20130504-1) ...
+(Reading database ... 10871 files and directories currently installed.)
+Preparing to replace libgomp1:mipsel 4.8.0-6 (using .../libgomp1_4.8.0-7_mipsel.deb) ...
+Unpacking replacement libgomp1:mipsel ...
+Preparing to replace gcc-4.8-base:mipsel 4.8.0-6 (using .../gcc-4.8-base_4.8.0-7_mipsel.deb) ...
+Unpacking replacement gcc-4.8-base:mipsel ...
+Setting up gcc-4.8-base:mipsel (4.8.0-7) ...
+(Reading database ... 10871 files and directories currently installed.)
+Preparing to replace libstdc++6:mipsel 4.8.0-6 (using .../libstdc++6_4.8.0-7_mipsel.deb) ...
+Unpacking replacement libstdc++6:mipsel ...
+Setting up libstdc++6:mipsel (4.8.0-7) ...
+(Reading database ... 10871 files and directories currently installed.)
+Preparing to replace libgcc1:mipsel 1:4.8.0-6 (using .../libgcc1_1%3a4.8.0-7_mipsel.deb) ...
+Unpacking replacement libgcc1:mipsel ...
+Setting up libgcc1:mipsel (1:4.8.0-7) ...
+Selecting previously unselected package libpipeline1:mipsel.
+(Reading database ... 10871 files and directories currently installed.)
+Unpacking libpipeline1:mipsel (from .../libpipeline1_1.2.3-1_mipsel.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.22.2-2_mipsel.deb) ...
+Selecting previously unselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_mipsel.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.3-6_mipsel.deb) ...
+Selecting previously unselected package libasprintf0c2:mipsel.
+Unpacking libasprintf0c2:mipsel (from .../libasprintf0c2_0.18.1.1-10_mipsel.deb) ...
+Selecting previously unselected package libmagic1:mipsel.
+Unpacking libmagic1:mipsel (from .../libmagic1_1%3a5.14-1_mipsel.deb) ...
+Selecting previously unselected package libxml2:mipsel.
+Unpacking libxml2:mipsel (from .../libxml2_2.8.0+dfsg1-7+nmu1_mipsel.deb) ...
+Selecting previously unselected package libexpat1:mipsel.
+Unpacking libexpat1:mipsel (from .../libexpat1_2.1.0-3_mipsel.deb) ...
+Selecting previously unselected package libfreetype6:mipsel.
+Unpacking libfreetype6:mipsel (from .../libfreetype6_2.4.9-1.1_mipsel.deb) ...
+Selecting previously unselected package ucf.
+Unpacking ucf (from .../archives/ucf_3.0027_all.deb) ...
+Moving old data out of the way
+Selecting previously unselected package fonts-dejavu-core.
+Unpacking fonts-dejavu-core (from .../fonts-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ...
+Selecting previously unselected package libfontconfig1:mipsel.
+Unpacking libfontconfig1:mipsel (from .../libfontconfig1_2.9.0-7.1_mipsel.deb) ...
+Selecting previously unselected package libpixman-1-0:mipsel.
+Unpacking libpixman-1-0:mipsel (from .../libpixman-1-0_0.26.0-4_mipsel.deb) ...
+Selecting previously unselected package libpng12-0:mipsel.
+Unpacking libpng12-0:mipsel (from .../libpng12-0_1.2.49-4_mipsel.deb) ...
+Selecting previously unselected package libxau6:mipsel.
+Unpacking libxau6:mipsel (from .../libxau6_1%3a1.0.7-1_mipsel.deb) ...
+Selecting previously unselected package libxdmcp6:mipsel.
+Unpacking libxdmcp6:mipsel (from .../libxdmcp6_1%3a1.1.1-1_mipsel.deb) ...
+Selecting previously unselected package libxcb1:mipsel.
+Unpacking libxcb1:mipsel (from .../libxcb1_1.8.1-2_mipsel.deb) ...
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ...
+Selecting previously unselected package libx11-6:mipsel.
+Unpacking libx11-6:mipsel (from .../libx11-6_2%3a1.5.0-1_mipsel.deb) ...
+Selecting previously unselected package libxcb-render0:mipsel.
+Unpacking libxcb-render0:mipsel (from .../libxcb-render0_1.8.1-2_mipsel.deb) ...
+Selecting previously unselected package libxcb-shm0:mipsel.
+Unpacking libxcb-shm0:mipsel (from .../libxcb-shm0_1.8.1-2_mipsel.deb) ...
+Selecting previously unselected package libxext6:mipsel.
+Unpacking libxext6:mipsel (from .../libxext6_2%3a1.3.1-2_mipsel.deb) ...
+Selecting previously unselected package libxrender1:mipsel.
+Unpacking libxrender1:mipsel (from .../libxrender1_1%3a0.9.7-1_mipsel.deb) ...
+Selecting previously unselected package libcairo2:mipsel.
+Unpacking libcairo2:mipsel (from .../libcairo2_1.12.14-4_mipsel.deb) ...
+Selecting previously unselected package libffi6:mipsel.
+Unpacking libffi6:mipsel (from .../libffi6_3.0.13-4_mipsel.deb) ...
+Selecting previously unselected package libglib2.0-0:mipsel.
+Unpacking libglib2.0-0:mipsel (from .../libglib2.0-0_2.36.1-2build1_mipsel.deb) ...
+Selecting previously unselected package libcroco3:mipsel.
+Unpacking libcroco3:mipsel (from .../libcroco3_0.6.8-2_mipsel.deb) ...
+Selecting previously unselected package libdatrie1:mipsel.
+Unpacking libdatrie1:mipsel (from .../libdatrie1_0.2.6-2_mipsel.deb) ...
+Selecting previously unselected package libunistring0:mipsel.
+Unpacking libunistring0:mipsel (from .../libunistring0_0.9.3-5_mipsel.deb) ...
+Selecting previously unselected package libgettextpo0:mipsel.
+Unpacking libgettextpo0:mipsel (from .../libgettextpo0_0.18.1.1-10_mipsel.deb) ...
+Selecting previously unselected package libgfortran3:mipsel.
+Unpacking libgfortran3:mipsel (from .../libgfortran3_4.8.0-7_mipsel.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.7+3_all.deb) ...
+Selecting previously unselected package libice6:mipsel.
+Unpacking libice6:mipsel (from .../libice6_2%3a1.0.8-2_mipsel.deb) ...
+Selecting previously unselected package libjpeg8:mipsel.
+Unpacking libjpeg8:mipsel (from .../libjpeg8_8d-1_mipsel.deb) ...
+Selecting previously unselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.19-2_all.deb) ...
+Selecting previously unselected package libthai0:mipsel.
+Unpacking libthai0:mipsel (from .../libthai0_0.1.19-2_mipsel.deb) ...
+Selecting previously unselected package libxft2:mipsel.
+Unpacking libxft2:mipsel (from .../libxft2_2.3.1-1_mipsel.deb) ...
+Selecting previously unselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_mipsel.deb) ...
+Selecting previously unselected package libpango1.0-0:mipsel.
+Unpacking libpango1.0-0:mipsel (from .../libpango1.0-0_1.30.0-1_mipsel.deb) ...
+Selecting previously unselected package libpaper1:mipsel.
+Unpacking libpaper1:mipsel (from .../libpaper1_1.1.24+nmu2_mipsel.deb) ...
+Selecting previously unselected package libpcrecpp0:mipsel.
+Unpacking libpcrecpp0:mipsel (from .../libpcrecpp0_1%3a8.31-2_mipsel.deb) ...
+Selecting previously unselected package libsm6:mipsel.
+Unpacking libsm6:mipsel (from .../libsm6_2%3a1.2.1-2_mipsel.deb) ...
+Selecting previously unselected package libjbig0:mipsel.
+Unpacking libjbig0:mipsel (from .../libjbig0_2.0-2_mipsel.deb) ...
+Selecting previously unselected package libtiff5:mipsel.
+Unpacking libtiff5:mipsel (from .../libtiff5_4.0.2-6_mipsel.deb) ...
+Selecting previously unselected package libxss1:mipsel.
+Unpacking libxss1:mipsel (from .../libxss1_1%3a1.2.2-1_mipsel.deb) ...
+Selecting previously unselected package libxt6:mipsel.
+Unpacking libxt6:mipsel (from .../libxt6_1%3a1.1.3-1_mipsel.deb) ...
+Selecting previously unselected package libmpc3:mipsel.
+Unpacking libmpc3:mipsel (from .../libmpc3_1.0.1-1_mipsel.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_1%3a5.14-1_mipsel.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_mipsel.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
+Preparing to replace libstdc++6-4.6-dev 4.6.3-15 (using .../libstdc++6-4.6-dev_4.6.4-2_mipsel.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.3-15 (using .../g++-4.6_4.6.4-2_mipsel.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.3-15 (using .../gcc-4.6_4.6.4-2_mipsel.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace cpp-4.6 4.6.3-15 (using .../cpp-4.6_4.6.4-2_mipsel.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace gcc-4.6-base:mipsel 4.6.3-15 (using .../gcc-4.6-base_4.6.4-2_mipsel.deb) ...
+Unpacking replacement gcc-4.6-base:mipsel ...
+Selecting previously unselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_mipsel.deb) ...
+Selecting previously unselected package libasprintf-dev:mipsel.
+Unpacking libasprintf-dev:mipsel (from .../libasprintf-dev_0.18.1.1-10_mipsel.deb) ...
+Selecting previously unselected package libgettextpo-dev:mipsel.
+Unpacking libgettextpo-dev:mipsel (from .../libgettextpo-dev_0.18.1.1-10_mipsel.deb) ...
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-10_mipsel.deb) ...
+Selecting previously unselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously unselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_9.20130518_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.4-2_mipsel.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.3-8_mipsel.deb) ...
+Selecting previously unselected package libblas3.
+Unpacking libblas3 (from .../libblas3_1.2.20110419-5_mipsel.deb) ...
+Selecting previously unselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_mipsel.deb) ...
+Selecting previously unselected package libbz2-dev:mipsel.
+Unpacking libbz2-dev:mipsel (from .../libbz2-dev_1.0.6-4_mipsel.deb) ...
+Selecting previously unselected package libjpeg8-dev:mipsel.
+Unpacking libjpeg8-dev:mipsel (from .../libjpeg8-dev_8d-1_mipsel.deb) ...
+Selecting previously unselected package liblapack3.
+Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_mipsel.deb) ...
+Selecting previously unselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.4.2+dfsg-1_mipsel.deb) ...
+Selecting previously unselected package libtinfo-dev:mipsel.
+Unpacking libtinfo-dev:mipsel (from .../libtinfo-dev_5.9+20130504-1_mipsel.deb) ...
+Selecting previously unselected package libncurses5-dev:mipsel.
+Unpacking libncurses5-dev:mipsel (from .../libncurses5-dev_5.9+20130504-1_mipsel.deb) ...
+Selecting previously unselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_mipsel.deb) ...
+Selecting previously unselected package libpcre3-dev:mipsel.
+Unpacking libpcre3-dev:mipsel (from .../libpcre3-dev_1%3a8.31-2_mipsel.deb) ...
+Selecting previously unselected package zlib1g-dev:mipsel.
+Unpacking zlib1g-dev:mipsel (from .../zlib1g-dev_1%3a1.2.8.dfsg-1_mipsel.deb) ...
+Selecting previously unselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_mipsel.deb) ...
+Selecting previously unselected package libreadline6-dev:mipsel.
+Unpacking libreadline6-dev:mipsel (from .../libreadline6-dev_6.2+dfsg-0.1_mipsel.deb) ...
+Selecting previously unselected package libreadline-dev:mipsel.
+Unpacking libreadline-dev:mipsel (from .../libreadline-dev_6.2+dfsg-0.1_mipsel.deb) ...
+Selecting previously unselected package zip.
+Unpacking zip (from .../archives/zip_3.0-7_mipsel.deb) ...
+Selecting previously unselected package unzip.
+Unpacking unzip (from .../unzip_6.0-9_mipsel.deb) ...
+Selecting previously unselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
+Selecting previously unselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_mipsel.deb) ...
+Selecting previously unselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_mipsel.deb) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_3.0.1~20130512-1_mipsel.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_3.0.1~20130512-1_all.deb) ...
+Selecting previously unselected package r-bioc-limma.
+Unpacking r-bioc-limma (from .../r-bioc-limma_3.16.3~dfsg-1_mipsel.deb) ...
+Setting up libgomp1:mipsel (4.8.0-7) ...
+Setting up libpipeline1:mipsel (1.2.3-1) ...
+Setting up groff-base (1.22.2-2) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.3-6) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:mipsel (0.18.1.1-10) ...
+Setting up libmagic1:mipsel (1:5.14-1) ...
+Setting up libxml2:mipsel (2.8.0+dfsg1-7+nmu1) ...
+Setting up libexpat1:mipsel (2.1.0-3) ...
+Setting up libfreetype6:mipsel (2.4.9-1.1) ...
+Setting up ucf (3.0027) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:mipsel (2.9.0-7.1) ...
+Setting up libpixman-1-0:mipsel (0.26.0-4) ...
+Setting up libpng12-0:mipsel (1.2.49-4) ...
+Setting up libxau6:mipsel (1:1.0.7-1) ...
+Setting up libxdmcp6:mipsel (1:1.1.1-1) ...
+Setting up libxcb1:mipsel (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:mipsel (2:1.5.0-1) ...
+Setting up libxcb-render0:mipsel (1.8.1-2) ...
+Setting up libxcb-shm0:mipsel (1.8.1-2) ...
+Setting up libxext6:mipsel (2:1.3.1-2) ...
+Setting up libxrender1:mipsel (1:0.9.7-1) ...
+Setting up libcairo2:mipsel (1.12.14-4) ...
+Setting up libffi6:mipsel (3.0.13-4) ...
+Setting up libglib2.0-0:mipsel (2.36.1-2build1) ...
+No schema files found: doing nothing.
+Setting up libcroco3:mipsel (0.6.8-2) ...
+Setting up libdatrie1:mipsel (0.2.6-2) ...
+Setting up libunistring0:mipsel (0.9.3-5) ...
+Setting up libgettextpo0:mipsel (0.18.1.1-10) ...
+Setting up libgfortran3:mipsel (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6:mipsel (2:1.0.8-2) ...
+Setting up libjpeg8:mipsel (8d-1) ...
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:mipsel (0.1.19-2) ...
+Setting up libxft2:mipsel (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
+Regenerating fonts cache... done.
+Setting up libpango1.0-0:mipsel (1.30.0-1) ...
+Setting up libpaper1:mipsel (1.1.24+nmu2) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpcrecpp0:mipsel (1:8.31-2) ...
+Setting up libsm6:mipsel (2:1.2.1-2) ...
+Setting up libjbig0:mipsel (2.0-2) ...
+Setting up libtiff5:mipsel (4.0.2-6) ...
+Setting up libxss1:mipsel (1:1.2.2-1) ...
+Setting up libxt6:mipsel (1:1.1.3-1) ...
+Setting up libmpc3:mipsel (1.0.1-1) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
+Setting up gcc-4.6-base:mipsel (4.6.4-2) ...
+Setting up cpp-4.6 (4.6.4-2) ...
+Setting up gcc-4.6 (4.6.4-2) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libasprintf-dev:mipsel (0.18.1.1-10) ...
+Setting up libgettextpo-dev:mipsel (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20130518) ...
+Setting up gfortran-4.6 (4.6.4-2) ...
+Setting up gfortran (4:4.6.3-8) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:mipsel (1.0.6-4) ...
+Setting up libjpeg8-dev:mipsel (8d-1) ...
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:mipsel (5.9+20130504-1) ...
+Setting up libncurses5-dev:mipsel (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:mipsel (1:8.31-2) ...
+Setting up zlib1g-dev:mipsel (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:mipsel (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:mipsel (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.1~20130512-1) ...
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (3.0.1~20130512-1) ...
+Setting up r-bioc-limma (3.16.3~dfsg-1) ...
+Setting up g++-4.6 (4.6.4-2) ...
+Setting up libstdc++6-4.6-dev (4.6.4-2) ...
+Removing negative dependencies:
+Checking correctness of source dependencies...
+Kernel: Linux 2.6.36-rc6-loongson-2f mipsel (mips64)
+Toolchain package versions: libc6-dev_2.13-38 dpkg-dev_1.16.10 linux-libc-dev_3.2.41-2 gcc-4.6_4.6.4-2 g++-4.6_4.6.4-2 binutils_2.22-8 libstdc++6-4.6-dev_4.6.4-2 libstdc++6_4.8.0-7
+Package versions: apt_0.9.8 base-files_7.2 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.20-3 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2 dash_0.5.7-3 debconf_1.5.50 debconf-english_1.5.38 debfoster_2.7-1.2 debhelper_9.20130518 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 eatmydata_26-2 fakeroot_1.18.4-2 fi [...]
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Fri May 17 13:25:10 2013 UTC using DSA key ID C09FD35A
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-edger_3.2.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-edger in r-bioc-edger-3.2.3~dfsg
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg-1.debian.tar.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: source package r-bioc-edger
+dpkg-buildpackage: source version 3.2.3~dfsg-1
+ dpkg-source --before-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: host architecture mipsel
+ /usr/bin/fakeroot debian/rules clean
+test -x debian/rules
+dh_testroot
+dh_clean
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build-arch
+test -x debian/rules
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+ /usr/bin/fakeroot debian/rules binary-arch
+test -x debian/rules
+dh_testroot
+dh_prep
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+dh_installdirs -A
+ install -d debian/r-bioc-edger
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-edger/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 3.0.1~20130512-1)" >> debian/r-bioc-edger.substvars
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'edgeR' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/src'
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c R_exact_test_by_deviance.cpp -o R_exact_test_by_deviance.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c R_loess_by_col.cpp -o R_loess_by_col.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c R_cr_adjust.cpp -o R_cr_adjust.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c R_levenberg.cpp -o R_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c R_maximize_interpolant.cpp -o R_maximize_interpolant.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c R_one_group.cpp -o R_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c R_simple_good_turing.cpp -o R_simple_good_turing.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c core/adj_coxreid.cpp -o core/adj_coxreid.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c core/glm_levenberg.cpp -o core/glm_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c core/glm_one_group.cpp -o core/glm_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c core/interpolator.cpp -o core/interpolator.o
+gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c core/fmm_spline.c -o core/fmm_spline.o
+g++ -shared -o edgeR.so R_exact_test_by_deviance.o R_loess_by_col.o R_cr_adjust.o R_levenberg.o R_maximize_interpolant.o R_one_group.o R_simple_good_turing.o core/adj_coxreid.o core/glm_levenberg.o core/glm_one_group.o core/interpolator.o core/fmm_spline.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/src'
+installing to /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs
+** R
+** data
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices
+** installing vignettes
+** testing if installed package can be loaded
+* DONE (edgeR)
+rm -vf /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/COPYING \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides/r-bioc-edger; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-edger.substvars
+dh_installdirs -pr-bioc-edger
+chmod 644 debian/r-bioc-edger/usr/lib/R/site-library/edgeR/doc/*
+dh_installdocs -pr-bioc-edger
+ install -g 0 -o 0 -d debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/doc/r-bioc-edger \;
+ cp -a debian/README.test debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ chown -R 0:0 debian/r-bioc-edger/usr/share/doc
+ chmod -R go=rX debian/r-bioc-edger/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-edger/usr/share/doc
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-edger/usr/share/doc/r-bioc-edger/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-edger/usr/share/doc/r-bioc-edger/copyright
+dh_installexamples -pr-bioc-edger
+dh_installman -pr-bioc-edger
+dh_installinfo -pr-bioc-edger
+dh_installmenu -pr-bioc-edger
+dh_installcron -pr-bioc-edger
+dh_installinit -pr-bioc-edger
+dh_installdebconf -pr-bioc-edger
+ install -o 0 -g 0 -d debian/r-bioc-edger/DEBIAN
+dh_installemacsen -pr-bioc-edger
+dh_installcatalogs -pr-bioc-edger
+ grep -s -v '^misc:Depends=' debian/r-bioc-edger.substvars > debian/r-bioc-edger.substvars.new || true
+ mv debian/r-bioc-edger.substvars.new debian/r-bioc-edger.substvars
+dh_installpam -pr-bioc-edger
+dh_installlogrotate -pr-bioc-edger
+dh_installlogcheck -pr-bioc-edger
+dh_installchangelogs -pr-bioc-edger
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-edger/usr/share/doc/r-bioc-edger/changelog.Debian
+dh_installudev -pr-bioc-edger
+dh_lintian -pr-bioc-edger
+dh_bugfiles -pr-bioc-edger
+dh_install -pr-bioc-edger
+dh_link -pr-bioc-edger
+dh_installmime -pr-bioc-edger
+dh_installgsettings -pr-bioc-edger
+dh_strip -pr-bioc-edger
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dh_compress -pr-bioc-edger
+ cd debian/r-bioc-edger
+ chmod a-x usr/share/doc/r-bioc-edger/changelog.Debian usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save
+ gzip -9nf usr/share/doc/r-bioc-edger/changelog.Debian usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save
+ cd '/build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg'
+dh_fixperms -pr-bioc-edger
+ find debian/r-bioc-edger -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-edger ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-edger/usr/share/doc -type f ! -regex 'debian/r-bioc-edger/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-edger/usr/share/man debian/r-bioc-edger/usr/man/ debian/r-bioc-edger/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/lib/perl5 debian/r-bioc-edger/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-edger/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
+dh_makeshlibs -pr-bioc-edger
+ rm -f debian/r-bioc-edger/DEBIAN/shlibs
+dh_installdeb -pr-bioc-edger
+dh_perl -pr-bioc-edger
+dh_shlibdeps -pr-bioc-edger
+ dpkg-shlibdeps -Tdebian/r-bioc-edger.substvars debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so was not linked against libgfortran.so.3 (it uses none of the library's symbols)
+dh_gencontrol -pr-bioc-edger
+ echo misc:Depends= >> debian/r-bioc-edger.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-edger.substvars -Pdebian/r-bioc-edger
+ chmod 644 debian/r-bioc-edger/DEBIAN/control
+ chown 0:0 debian/r-bioc-edger/DEBIAN/control
+dh_md5sums -pr-bioc-edger
+ (cd debian/r-bioc-edger >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-edger/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-edger/DEBIAN/md5sums
+dh_builddeb -pr-bioc-edger -- -Z xz
+ dpkg-deb -Z xz --build debian/r-bioc-edger ..
+dpkg-deb: building package `r-bioc-edger' in `../r-bioc-edger_3.2.3~dfsg-1_mipsel.deb'.
+ dpkg-genchanges -B -mmipsel Build Daemon (phrixos) <buildd_mipsel-phrixos at buildd.debian.org> >../r-bioc-edger_3.2.3~dfsg-1_mipsel.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20130519-0417
+
+r-bioc-edger_3.2.3~dfsg-1_mipsel.changes:
+Format: 1.8
+Date: Fri, 17 May 2013 14:36:51 +0200
+Source: r-bioc-edger
+Binary: r-bioc-edger
+Architecture: mipsel
+Version: 3.2.3~dfsg-1
+Distribution: sid
+Urgency: low
+Maintainer: mipsel Build Daemon (phrixos) <buildd_mipsel-phrixos at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
+Description:
+ r-bioc-edger - Empirical analysis of digital gene expression data in R
+Changes:
+ r-bioc-edger (3.2.3~dfsg-1) unstable; urgency=low
+ .
+ [ Charles Plessy ]
+ 74f1a5f Imported Upstream version 2.6.10~dfsg
+ d2d70ab Corrected VCS URLs.
+ 44c9d4e Regression tests for autopkgtest.
+ .
+ [ Andreas Tille ]
+ * Imported new upstream version 3.2.3~dfsg
+ * debian/control
+ - Added myself as Uploader
+ - Add ${shlibs:Depends} to ensure dependency from libc
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - normalised format
+ - Removed unneeded Pre-Depends: dpkg (>= 1.15.6)
+ - Removed versioned dependency of r-base-dev
+ - Package is "Architecture: any" (rather than all)
+ * debian/source/format: Add explicit source format specification
+ * debian/copyright:
+ - Update Source location
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - Add years to Copyright field
+ * debian/upstream: inst/CITATION asks for citing this more recent
+ paper that is now on top of debian/upstream
+ * debian/rules: remove executable flag from installed documentation
+Checksums-Sha1:
+ e2ab93d2c0b72099905f19fd3bdb8d3571ebb92f 1367034 r-bioc-edger_3.2.3~dfsg-1_mipsel.deb
+Checksums-Sha256:
+ 00622ad05a85a3b481d4ce2351895dde48840383f084a28a2a0b7e947e54f18a 1367034 r-bioc-edger_3.2.3~dfsg-1_mipsel.deb
+Files:
+ 2635537df7b0e5098be145e9d6d0a990 1367034 gnu-r optional r-bioc-edger_3.2.3~dfsg-1_mipsel.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-edger_3.2.3~dfsg-1_mipsel.deb
+────────────────────────────────────
+
+ new debian package, version 2.0.
+ size 1367034 bytes: control archive= 1878 bytes.
+ 967 bytes, 17 lines control
+ 2932 bytes, 38 lines md5sums
+ Package: r-bioc-edger
+ Version: 3.2.3~dfsg-1
+ Architecture: mipsel
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 2537
+ Depends: r-base-core (>= 3.0.1~20130512-1), r-bioc-limma, libblas3 | libblas.so.3 | libatlas3-base, libc6 (>= 2.2), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3), liblapack3 | liblapack.so.3 | libatlas3-base, libstdc++6 (>= 4.1.1)
+ Suggests: r-cran-mass
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
+ Description: Empirical analysis of digital gene expression data in R
+ Bioconductor package for differential expression analysis of whole
+ transcriptome sequencing (RNA-seq) and digital gene expression
+ profiles with biological replication. It uses empirical Bayes
+ estimation and exact tests based on the negative binomial
+ distribution. It is also useful for differential signal analysis with
+ other types of genome-scale count data.
+
+drwxr-xr-x root/root 0 2013-05-19 04:17 ./
+drwxr-xr-x root/root 0 2013-05-19 04:17 ./usr/
+drwxr-xr-x root/root 0 2013-05-19 04:17 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-19 04:17 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-19 04:17 ./usr/share/doc/r-bioc-edger/
+drwxr-xr-x root/root 0 2013-05-19 04:17 ./usr/share/doc/r-bioc-edger/tests/
+-rw-r--r-- root/root 5706 2013-04-08 00:02 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save.gz
+-rw-r--r-- root/root 1392 2013-04-03 22:17 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R.gz
+-rw-r--r-- root/root 274 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.Debian
+-rw-r--r-- root/root 816 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.test
+-rw-r--r-- root/root 1404 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/copyright
+-rw-r--r-- root/root 1384 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/changelog.Debian.gz
+drwxr-xr-x root/root 0 2013-05-19 04:15 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-19 04:15 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-19 04:17 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-19 04:17 ./usr/lib/R/site-library/edgeR/
+-rw-r--r-- root/root 1113 2013-05-19 04:15 ./usr/lib/R/site-library/edgeR/DESCRIPTION
+-rw-r--r-- root/root 6834 2013-05-19 04:17 ./usr/lib/R/site-library/edgeR/INDEX
+drwxr-xr-x root/root 0 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/help/
+-rw-r--r-- root/root 230630 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/help/edgeR.rdb
+-rw-r--r-- root/root 1342 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/help/aliases.rds
+-rw-r--r-- root/root 798 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/help/paths.rds
+-rw-r--r-- root/root 3776 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/help/AnIndex
+-rw-r--r-- root/root 1769 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/help/edgeR.rdx
+-rw-r--r-- root/root 2057 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/CITATION
+drwxr-xr-x root/root 0 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/R/
+-rw-r--r-- root/root 116072 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/R/edgeR.rdb
+-rw-r--r-- root/root 2292 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/R/edgeR.rdx
+-rw-r--r-- root/root 1056 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/R/edgeR
+drwxr-xr-x root/root 0 2013-05-19 04:17 ./usr/lib/R/site-library/edgeR/libs/
+-rw-r--r-- root/root 105056 2013-05-19 04:17 ./usr/lib/R/site-library/edgeR/libs/edgeR.so
+drwxr-xr-x root/root 0 2013-05-19 04:17 ./usr/lib/R/site-library/edgeR/doc/
+-rw-r--r-- root/root 1826 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/doc/edgeR.Rnw
+-rw-r--r-- root/root 49354 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/doc/edgeR.pdf
+-rw-r--r-- root/root 879697 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/doc/edgeRUsersGuide.pdf
+-rw-r--r-- root/root 691 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/doc/index.html
+drwxr-xr-x root/root 0 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/html/
+-rw-r--r-- root/root 22781 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/html/00Index.html
+-rw-r--r-- root/root 1179 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/html/R.css
+drwxr-xr-x root/root 0 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/data/
+-rw-r--r-- root/root 248500 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/data/NC1.txt
+-rw-r--r-- root/root 263571 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/data/Tu98.txt
+-rw-r--r-- root/root 228426 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/data/NC2.txt
+-rw-r--r-- root/root 318545 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/data/Tu102.txt
+-rw-r--r-- root/root 19 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/data/datalist
+-rw-r--r-- root/root 13746 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/NEWS.Rd
+-rw-r--r-- root/root 804 2013-05-19 04:15 ./usr/lib/R/site-library/edgeR/NAMESPACE
+drwxr-xr-x root/root 0 2013-05-19 04:17 ./usr/lib/R/site-library/edgeR/Meta/
+-rw-r--r-- root/root 368 2013-05-19 04:17 ./usr/lib/R/site-library/edgeR/Meta/nsInfo.rds
+-rw-r--r-- root/root 996 2013-05-19 04:15 ./usr/lib/R/site-library/edgeR/Meta/package.rds
+-rw-r--r-- root/root 3475 2013-05-19 04:17 ./usr/lib/R/site-library/edgeR/Meta/hsearch.rds
+-rw-r--r-- root/root 228 2013-05-19 04:17 ./usr/lib/R/site-library/edgeR/Meta/vignette.rds
+-rw-r--r-- root/root 161 2013-05-19 04:17 ./usr/lib/R/site-library/edgeR/Meta/data.rds
+-rw-r--r-- root/root 3639 2013-05-19 04:17 ./usr/lib/R/site-library/edgeR/Meta/Rd.rds
+-rw-r--r-- root/root 1640 2013-05-19 04:17 ./usr/lib/R/site-library/edgeR/Meta/links.rds
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+Purging /var/lib/schroot/mount/sid-mipsel-sbuild-3dbe02a6-f490-4402-84c0-399e3cc009b4/build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT
+Not removing build depends: cloned chroot in use
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20130519-0417
+Build needed 00:07:59, 6928k disc space
+
diff --git a/mipsel.log b/mipsel.log
new file mode 100644
index 0000000..cc3e65c
--- /dev/null
+++ b/mipsel.log
@@ -0,0 +1,903 @@
+From buildd at phrixos.ayous.org Sun May 19 04:18:49 2013
+Return-path: <buildd at phrixos.ayous.org>
+Received: from phrixos.ayous.org ([2001:a60:f006:deb:223:9eff:fe00:f7c]
+ helo=alius.ayous.org)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at phrixos.ayous.org>)
+ id 1Udv4r-0006xY-M5
+ for logs at buildd.debian.org; Sun, 19 May 2013 04:18:48 +0000
+Received: from buildd by phrixos.ayous.org with local (Exim 4.72)
+ (envelope-from <buildd at phrixos.ayous.org>)
+ id 1Udv4L-0007xA-Mv; Sun, 19 May 2013 04:18:01 +0000
+Date: Sun, 19 May 2013 04:18:01 +0000
+Message-Id: <E1Udv4L-0007xA-Mv at phrixos.ayous.org>
+From: buildd on phrixos <buildd at phrixos.ayous.org>
+To: aba+buildd_phrixos at not.so.argh.org,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-edger_3.2.3~dfsg-1 on mipsel
+ (dist=sid)
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on phrixos.ayous.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-edger 3.2.3~dfsg-1 (mipsel) 19 May 2013 04:09 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-edger
+Version: 3.2.3~dfsg-1
+Architecture: mipsel
+Chroot Build Dir: /var/lib/schroot/mount/sid-mipsel-sbuild-3dbe02a6-f490-4402-84c0-399e3cc009b4/build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT
+Start Time: 20130519-0409
+Get:1 http://mirror.ayous.org unstable InRelease [205 kB]
+Get:2 http://mirror.ayous.org unstable/main Sources [8529 kB]
+Get:3 http://mirror.ayous.org unstable/contrib Sources [64.7 kB]
+Get:4 http://mirror.ayous.org unstable/non-free Sources [126 kB]
+Get:5 http://mirror.ayous.org unstable/main mipsel Packages [8220 kB]
+Get:6 http://mirror.ayous.org unstable/contrib mipsel Packages [45.4 kB]
+Fetched 17.2 MB in 1min 15s (229 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-edger' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/debian-med/r-bioc-edger.git
+Need to get 1218 kB of source archives.
+Get:1 http://mirror.ayous.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (dsc) [1445 B]
+Get:2 http://mirror.ayous.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (tar) [1212 kB]
+Get:3 http://mirror.ayous.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (diff) [4311 B]
+Fetched 1218 kB in 4s (274 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+** Using build dependencies supplied by package:
+Build-Depends: debhelper (>= 9), cdbs, r-base-dev, r-bioc-limma
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Checking for already installed source dependencies...
+debhelper: missing
+Using default version 9.20130518
+cdbs: missing
+r-base-dev: missing
+r-bioc-limma: missing
+Checking for source dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev r-bioc-limma
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following package was automatically installed and is no longer required:
+ libmpc2
+Use 'apt-get autoremove' to remove it.
+The following extra packages will be installed:
+ bsdmainutils cpp-4.6 file fontconfig fontconfig-config fonts-dejavu-core
+ g++-4.6 gcc-4.6 gcc-4.6-base gcc-4.8-base gettext gettext-base gfortran
+ gfortran-4.6 groff-base html2text intltool-debian libasprintf-dev
+ libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3
+ libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6 libgcc1
+ libgettextpo-dev libgettextpo0 libgfortran3 libglib2.0-0 libgomp1 libice6
+ libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libmpc3
+ libncurses5 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
+ libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev
+ libthai-data libthai0 libtiff5 libtinfo-dev libtinfo5 libunistring0 libx11-6
+ libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
+ libxft2 libxml2 libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf
+ r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+ zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make
+ g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ libcloog-ppl1 libcloog-ppl0 libppl-c4 libppl12 libppl9 gettext-doc
+ gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
+ libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp
+ libstdc++6-4.6-doc less www-browser libmail-box-perl r-doc-info r-doc-pdf
+ r-mathlib r-base-html texlive-base texlive-latex-base
+ texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
+ texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
+ texi2html tcl-tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
+ libgpm2 xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
+ x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper file fontconfig fontconfig-config
+ fonts-dejavu-core gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libasprintf-dev libasprintf0c2 libblas-dev
+ libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi6
+ libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0 libgfortran3
+ libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3
+ libmagic1 libmpc3 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
+ libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff5
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core r-base-dev r-bioc-limma tcl8.5 tk8.5
+ ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base gcc-4.8-base libgcc1 libgomp1
+ libncurses5 libstdc++6 libstdc++6-4.6-dev libtinfo5 ncurses-bin
+12 upgraded, 83 newly installed, 0 to remove and 20 not upgraded.
+Need to get 73.4 MB of archives.
+After this operation, 121 MB of additional disk space will be used.
+Get:1 http://mirror.ayous.org/debian/ unstable/main libtinfo5 mipsel 5.9+20130504-1 [287 kB]
+Get:2 http://mirror.ayous.org/debian/ unstable/main libncurses5 mipsel 5.9+20130504-1 [99.9 kB]
+Get:3 http://mirror.ayous.org/debian/ unstable/main ncurses-bin mipsel 5.9+20130504-1 [359 kB]
+Get:4 http://mirror.ayous.org/debian/ unstable/main libgomp1 mipsel 4.8.0-7 [28.8 kB]
+Get:5 http://mirror.ayous.org/debian/ unstable/main gcc-4.8-base mipsel 4.8.0-7 [148 kB]
+Get:6 http://mirror.ayous.org/debian/ unstable/main libstdc++6 mipsel 4.8.0-7 [311 kB]
+Get:7 http://mirror.ayous.org/debian/ unstable/main libgcc1 mipsel 1:4.8.0-7 [69.7 kB]
+Get:8 http://mirror.ayous.org/debian/ unstable/main libpipeline1 mipsel 1.2.3-1 [37.4 kB]
+Get:9 http://mirror.ayous.org/debian/ unstable/main groff-base mipsel 1.22.2-2 [712 kB]
+Get:10 http://mirror.ayous.org/debian/ unstable/main bsdmainutils mipsel 9.0.5 [211 kB]
+Get:11 http://mirror.ayous.org/debian/ unstable/main man-db mipsel 2.6.3-6 [871 kB]
+Get:12 http://mirror.ayous.org/debian/ unstable/main libasprintf0c2 mipsel 0.18.1.1-10 [27.1 kB]
+Get:13 http://mirror.ayous.org/debian/ unstable/main libmagic1 mipsel 1:5.14-1 [217 kB]
+Get:14 http://mirror.ayous.org/debian/ unstable/main libxml2 mipsel 2.8.0+dfsg1-7+nmu1 [868 kB]
+Get:15 http://mirror.ayous.org/debian/ unstable/main libexpat1 mipsel 2.1.0-3 [144 kB]
+Get:16 http://mirror.ayous.org/debian/ unstable/main libfreetype6 mipsel 2.4.9-1.1 [434 kB]
+Get:17 http://mirror.ayous.org/debian/ unstable/main ucf all 3.0027 [71.4 kB]
+Get:18 http://mirror.ayous.org/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
+Get:19 http://mirror.ayous.org/debian/ unstable/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
+Get:20 http://mirror.ayous.org/debian/ unstable/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:21 http://mirror.ayous.org/debian/ unstable/main libfontconfig1 mipsel 2.9.0-7.1 [301 kB]
+Get:22 http://mirror.ayous.org/debian/ unstable/main libpixman-1-0 mipsel 0.26.0-4 [383 kB]
+Get:23 http://mirror.ayous.org/debian/ unstable/main libpng12-0 mipsel 1.2.49-4 [185 kB]
+Get:24 http://mirror.ayous.org/debian/ unstable/main libxau6 mipsel 1:1.0.7-1 [18.2 kB]
+Get:25 http://mirror.ayous.org/debian/ unstable/main libxdmcp6 mipsel 1:1.1.1-1 [26.1 kB]
+Get:26 http://mirror.ayous.org/debian/ unstable/main libxcb1 mipsel 1.8.1-2 [41.2 kB]
+Get:27 http://mirror.ayous.org/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:28 http://mirror.ayous.org/debian/ unstable/main libx11-6 mipsel 2:1.5.0-1 [868 kB]
+Get:29 http://mirror.ayous.org/debian/ unstable/main libxcb-render0 mipsel 1.8.1-2 [16.3 kB]
+Get:30 http://mirror.ayous.org/debian/ unstable/main libxcb-shm0 mipsel 1.8.1-2 [10.2 kB]
+Get:31 http://mirror.ayous.org/debian/ unstable/main libxext6 mipsel 2:1.3.1-2 [51.3 kB]
+Get:32 http://mirror.ayous.org/debian/ unstable/main libxrender1 mipsel 1:0.9.7-1 [30.6 kB]
+Get:33 http://mirror.ayous.org/debian/ unstable/main libcairo2 mipsel 1.12.14-4 [1015 kB]
+Get:34 http://mirror.ayous.org/debian/ unstable/main libffi6 mipsel 3.0.13-4 [19.9 kB]
+Get:35 http://mirror.ayous.org/debian/ unstable/main libglib2.0-0 mipsel 2.36.1-2build1 [1906 kB]
+Get:36 http://mirror.ayous.org/debian/ unstable/main libcroco3 mipsel 0.6.8-2 [120 kB]
+Get:37 http://mirror.ayous.org/debian/ unstable/main libdatrie1 mipsel 0.2.6-2 [29.2 kB]
+Get:38 http://mirror.ayous.org/debian/ unstable/main libunistring0 mipsel 0.9.3-5 [407 kB]
+Get:39 http://mirror.ayous.org/debian/ unstable/main libgettextpo0 mipsel 0.18.1.1-10 [140 kB]
+Get:40 http://mirror.ayous.org/debian/ unstable/main libgfortran3 mipsel 4.8.0-7 [237 kB]
+Get:41 http://mirror.ayous.org/debian/ unstable/main x11-common all 1:7.7+3 [284 kB]
+Get:42 http://mirror.ayous.org/debian/ unstable/main libice6 mipsel 2:1.0.8-2 [56.7 kB]
+Get:43 http://mirror.ayous.org/debian/ unstable/main libjpeg8 mipsel 8d-1 [145 kB]
+Get:44 http://mirror.ayous.org/debian/ unstable/main libthai-data all 0.1.19-2 [156 kB]
+Get:45 http://mirror.ayous.org/debian/ unstable/main libthai0 mipsel 0.1.19-2 [41.6 kB]
+Get:46 http://mirror.ayous.org/debian/ unstable/main libxft2 mipsel 2.3.1-1 [59.8 kB]
+Get:47 http://mirror.ayous.org/debian/ unstable/main fontconfig mipsel 2.9.0-7.1 [348 kB]
+Get:48 http://mirror.ayous.org/debian/ unstable/main libpango1.0-0 mipsel 1.30.0-1 [439 kB]
+Get:49 http://mirror.ayous.org/debian/ unstable/main libpaper1 mipsel 1.1.24+nmu2 [21.4 kB]
+Get:50 http://mirror.ayous.org/debian/ unstable/main libpcrecpp0 mipsel 1:8.31-2 [127 kB]
+Get:51 http://mirror.ayous.org/debian/ unstable/main libsm6 mipsel 2:1.2.1-2 [32.5 kB]
+Get:52 http://mirror.ayous.org/debian/ unstable/main libjbig0 mipsel 2.0-2 [32.4 kB]
+Get:53 http://mirror.ayous.org/debian/ unstable/main libtiff5 mipsel 4.0.2-6 [229 kB]
+Get:54 http://mirror.ayous.org/debian/ unstable/main libxss1 mipsel 1:1.2.2-1 [17.3 kB]
+Get:55 http://mirror.ayous.org/debian/ unstable/main libxt6 mipsel 1:1.1.3-1 [192 kB]
+Get:56 http://mirror.ayous.org/debian/ unstable/main libmpc3 mipsel 1.0.1-1 [40.4 kB]
+Get:57 http://mirror.ayous.org/debian/ unstable/main file mipsel 1:5.14-1 [53.9 kB]
+Get:58 http://mirror.ayous.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-10 [148 kB]
+Get:59 http://mirror.ayous.org/debian/ unstable/main cdbs all 0.4.121 [80.5 kB]
+Get:60 http://mirror.ayous.org/debian/ unstable/main libstdc++6-4.6-dev mipsel 4.6.4-2 [1698 kB]
+Get:61 http://mirror.ayous.org/debian/ unstable/main g++-4.6 mipsel 4.6.4-2 [4089 kB]
+Get:62 http://mirror.ayous.org/debian/ unstable/main gcc-4.6 mipsel 4.6.4-2 [3990 kB]
+Get:63 http://mirror.ayous.org/debian/ unstable/main cpp-4.6 mipsel 4.6.4-2 [3713 kB]
+Get:64 http://mirror.ayous.org/debian/ unstable/main gcc-4.6-base mipsel 4.6.4-2 [143 kB]
+Get:65 http://mirror.ayous.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
+Get:66 http://mirror.ayous.org/debian/ unstable/main libasprintf-dev mipsel 0.18.1.1-10 [26.9 kB]
+Get:67 http://mirror.ayous.org/debian/ unstable/main libgettextpo-dev mipsel 0.18.1.1-10 [188 kB]
+Get:68 http://mirror.ayous.org/debian/ unstable/main gettext mipsel 0.18.1.1-10 [1734 kB]
+Get:69 http://mirror.ayous.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:70 http://mirror.ayous.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:71 http://mirror.ayous.org/debian/ unstable/main debhelper all 9.20130518 [708 kB]
+Get:72 http://mirror.ayous.org/debian/ unstable/main gfortran-4.6 mipsel 4.6.4-2 [4314 kB]
+Get:73 http://mirror.ayous.org/debian/ unstable/main gfortran mipsel 4:4.6.3-8 [1142 B]
+Get:74 http://mirror.ayous.org/debian/ unstable/main libblas3 mipsel 1.2.20110419-5 [202 kB]
+Get:75 http://mirror.ayous.org/debian/ unstable/main libblas-dev mipsel 1.2.20110419-5 [241 kB]
+Get:76 http://mirror.ayous.org/debian/ unstable/main libbz2-dev mipsel 1.0.6-4 [37.3 kB]
+Get:77 http://mirror.ayous.org/debian/ unstable/main libjpeg8-dev mipsel 8d-1 [257 kB]
+Get:78 http://mirror.ayous.org/debian/ unstable/main liblapack3 mipsel 3.4.2+dfsg-1 [4388 kB]
+Get:79 http://mirror.ayous.org/debian/ unstable/main liblapack-dev mipsel 3.4.2+dfsg-1 [5139 kB]
+Get:80 http://mirror.ayous.org/debian/ unstable/main libtinfo-dev mipsel 5.9+20130504-1 [105 kB]
+Get:81 http://mirror.ayous.org/debian/ unstable/main libncurses5-dev mipsel 5.9+20130504-1 [226 kB]
+Get:82 http://mirror.ayous.org/debian/ unstable/main libpaper-utils mipsel 1.1.24+nmu2 [18.3 kB]
+Get:83 http://mirror.ayous.org/debian/ unstable/main libpcre3-dev mipsel 1:8.31-2 [365 kB]
+Get:84 http://mirror.ayous.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.8.dfsg-1 [216 kB]
+Get:85 http://mirror.ayous.org/debian/ unstable/main libpng12-dev mipsel 1.2.49-4 [275 kB]
+Get:86 http://mirror.ayous.org/debian/ unstable/main libreadline6-dev mipsel 6.2+dfsg-0.1 [199 kB]
+Get:87 http://mirror.ayous.org/debian/ unstable/main libreadline-dev mipsel 6.2+dfsg-0.1 [896 B]
+Get:88 http://mirror.ayous.org/debian/ unstable/main zip mipsel 3.0-7 [334 kB]
+Get:89 http://mirror.ayous.org/debian/ unstable/main unzip mipsel 6.0-9 [189 kB]
+Get:90 http://mirror.ayous.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:91 http://mirror.ayous.org/debian/ unstable/main tcl8.5 mipsel 8.5.11-2 [1612 kB]
+Get:92 http://mirror.ayous.org/debian/ unstable/main tk8.5 mipsel 8.5.11-2 [1167 kB]
+Get:93 http://mirror.ayous.org/debian/ unstable/main r-base-core mipsel 3.0.1~20130512-1 [21.0 MB]
+Get:94 http://mirror.ayous.org/debian/ unstable/main r-base-dev all 3.0.1~20130512-1 [3910 B]
+Get:95 http://mirror.ayous.org/debian/ unstable/main r-bioc-limma mipsel 3.16.3~dfsg-1 [1618 kB]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 73.4 MB in 1min 47s (682 kB/s)
+(Reading database ... 10873 files and directories currently installed.)
+Preparing to replace libtinfo5:mipsel 5.9-10 (using .../libtinfo5_5.9+20130504-1_mipsel.deb) ...
+Unpacking replacement libtinfo5:mipsel ...
+Setting up libtinfo5:mipsel (5.9+20130504-1) ...
+(Reading database ... 10873 files and directories currently installed.)
+Preparing to replace libncurses5:mipsel 5.9-10 (using .../libncurses5_5.9+20130504-1_mipsel.deb) ...
+Unpacking replacement libncurses5:mipsel ...
+Setting up libncurses5:mipsel (5.9+20130504-1) ...
+(Reading database ... 10873 files and directories currently installed.)
+Preparing to replace ncurses-bin 5.9-10 (using .../ncurses-bin_5.9+20130504-1_mipsel.deb) ...
+Unpacking replacement ncurses-bin ...
+Setting up ncurses-bin (5.9+20130504-1) ...
+(Reading database ... 10871 files and directories currently installed.)
+Preparing to replace libgomp1:mipsel 4.8.0-6 (using .../libgomp1_4.8.0-7_mipsel.deb) ...
+Unpacking replacement libgomp1:mipsel ...
+Preparing to replace gcc-4.8-base:mipsel 4.8.0-6 (using .../gcc-4.8-base_4.8.0-7_mipsel.deb) ...
+Unpacking replacement gcc-4.8-base:mipsel ...
+Setting up gcc-4.8-base:mipsel (4.8.0-7) ...
+(Reading database ... 10871 files and directories currently installed.)
+Preparing to replace libstdc++6:mipsel 4.8.0-6 (using .../libstdc++6_4.8.0-7_mipsel.deb) ...
+Unpacking replacement libstdc++6:mipsel ...
+Setting up libstdc++6:mipsel (4.8.0-7) ...
+(Reading database ... 10871 files and directories currently installed.)
+Preparing to replace libgcc1:mipsel 1:4.8.0-6 (using .../libgcc1_1%3a4.8.0-7_mipsel.deb) ...
+Unpacking replacement libgcc1:mipsel ...
+Setting up libgcc1:mipsel (1:4.8.0-7) ...
+Selecting previously unselected package libpipeline1:mipsel.
+(Reading database ... 10871 files and directories currently installed.)
+Unpacking libpipeline1:mipsel (from .../libpipeline1_1.2.3-1_mipsel.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.22.2-2_mipsel.deb) ...
+Selecting previously unselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_mipsel.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.3-6_mipsel.deb) ...
+Selecting previously unselected package libasprintf0c2:mipsel.
+Unpacking libasprintf0c2:mipsel (from .../libasprintf0c2_0.18.1.1-10_mipsel.deb) ...
+Selecting previously unselected package libmagic1:mipsel.
+Unpacking libmagic1:mipsel (from .../libmagic1_1%3a5.14-1_mipsel.deb) ...
+Selecting previously unselected package libxml2:mipsel.
+Unpacking libxml2:mipsel (from .../libxml2_2.8.0+dfsg1-7+nmu1_mipsel.deb) ...
+Selecting previously unselected package libexpat1:mipsel.
+Unpacking libexpat1:mipsel (from .../libexpat1_2.1.0-3_mipsel.deb) ...
+Selecting previously unselected package libfreetype6:mipsel.
+Unpacking libfreetype6:mipsel (from .../libfreetype6_2.4.9-1.1_mipsel.deb) ...
+Selecting previously unselected package ucf.
+Unpacking ucf (from .../archives/ucf_3.0027_all.deb) ...
+Moving old data out of the way
+Selecting previously unselected package fonts-dejavu-core.
+Unpacking fonts-dejavu-core (from .../fonts-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ...
+Selecting previously unselected package libfontconfig1:mipsel.
+Unpacking libfontconfig1:mipsel (from .../libfontconfig1_2.9.0-7.1_mipsel.deb) ...
+Selecting previously unselected package libpixman-1-0:mipsel.
+Unpacking libpixman-1-0:mipsel (from .../libpixman-1-0_0.26.0-4_mipsel.deb) ...
+Selecting previously unselected package libpng12-0:mipsel.
+Unpacking libpng12-0:mipsel (from .../libpng12-0_1.2.49-4_mipsel.deb) ...
+Selecting previously unselected package libxau6:mipsel.
+Unpacking libxau6:mipsel (from .../libxau6_1%3a1.0.7-1_mipsel.deb) ...
+Selecting previously unselected package libxdmcp6:mipsel.
+Unpacking libxdmcp6:mipsel (from .../libxdmcp6_1%3a1.1.1-1_mipsel.deb) ...
+Selecting previously unselected package libxcb1:mipsel.
+Unpacking libxcb1:mipsel (from .../libxcb1_1.8.1-2_mipsel.deb) ...
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ...
+Selecting previously unselected package libx11-6:mipsel.
+Unpacking libx11-6:mipsel (from .../libx11-6_2%3a1.5.0-1_mipsel.deb) ...
+Selecting previously unselected package libxcb-render0:mipsel.
+Unpacking libxcb-render0:mipsel (from .../libxcb-render0_1.8.1-2_mipsel.deb) ...
+Selecting previously unselected package libxcb-shm0:mipsel.
+Unpacking libxcb-shm0:mipsel (from .../libxcb-shm0_1.8.1-2_mipsel.deb) ...
+Selecting previously unselected package libxext6:mipsel.
+Unpacking libxext6:mipsel (from .../libxext6_2%3a1.3.1-2_mipsel.deb) ...
+Selecting previously unselected package libxrender1:mipsel.
+Unpacking libxrender1:mipsel (from .../libxrender1_1%3a0.9.7-1_mipsel.deb) ...
+Selecting previously unselected package libcairo2:mipsel.
+Unpacking libcairo2:mipsel (from .../libcairo2_1.12.14-4_mipsel.deb) ...
+Selecting previously unselected package libffi6:mipsel.
+Unpacking libffi6:mipsel (from .../libffi6_3.0.13-4_mipsel.deb) ...
+Selecting previously unselected package libglib2.0-0:mipsel.
+Unpacking libglib2.0-0:mipsel (from .../libglib2.0-0_2.36.1-2build1_mipsel.deb) ...
+Selecting previously unselected package libcroco3:mipsel.
+Unpacking libcroco3:mipsel (from .../libcroco3_0.6.8-2_mipsel.deb) ...
+Selecting previously unselected package libdatrie1:mipsel.
+Unpacking libdatrie1:mipsel (from .../libdatrie1_0.2.6-2_mipsel.deb) ...
+Selecting previously unselected package libunistring0:mipsel.
+Unpacking libunistring0:mipsel (from .../libunistring0_0.9.3-5_mipsel.deb) ...
+Selecting previously unselected package libgettextpo0:mipsel.
+Unpacking libgettextpo0:mipsel (from .../libgettextpo0_0.18.1.1-10_mipsel.deb) ...
+Selecting previously unselected package libgfortran3:mipsel.
+Unpacking libgfortran3:mipsel (from .../libgfortran3_4.8.0-7_mipsel.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.7+3_all.deb) ...
+Selecting previously unselected package libice6:mipsel.
+Unpacking libice6:mipsel (from .../libice6_2%3a1.0.8-2_mipsel.deb) ...
+Selecting previously unselected package libjpeg8:mipsel.
+Unpacking libjpeg8:mipsel (from .../libjpeg8_8d-1_mipsel.deb) ...
+Selecting previously unselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.19-2_all.deb) ...
+Selecting previously unselected package libthai0:mipsel.
+Unpacking libthai0:mipsel (from .../libthai0_0.1.19-2_mipsel.deb) ...
+Selecting previously unselected package libxft2:mipsel.
+Unpacking libxft2:mipsel (from .../libxft2_2.3.1-1_mipsel.deb) ...
+Selecting previously unselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_mipsel.deb) ...
+Selecting previously unselected package libpango1.0-0:mipsel.
+Unpacking libpango1.0-0:mipsel (from .../libpango1.0-0_1.30.0-1_mipsel.deb) ...
+Selecting previously unselected package libpaper1:mipsel.
+Unpacking libpaper1:mipsel (from .../libpaper1_1.1.24+nmu2_mipsel.deb) ...
+Selecting previously unselected package libpcrecpp0:mipsel.
+Unpacking libpcrecpp0:mipsel (from .../libpcrecpp0_1%3a8.31-2_mipsel.deb) ...
+Selecting previously unselected package libsm6:mipsel.
+Unpacking libsm6:mipsel (from .../libsm6_2%3a1.2.1-2_mipsel.deb) ...
+Selecting previously unselected package libjbig0:mipsel.
+Unpacking libjbig0:mipsel (from .../libjbig0_2.0-2_mipsel.deb) ...
+Selecting previously unselected package libtiff5:mipsel.
+Unpacking libtiff5:mipsel (from .../libtiff5_4.0.2-6_mipsel.deb) ...
+Selecting previously unselected package libxss1:mipsel.
+Unpacking libxss1:mipsel (from .../libxss1_1%3a1.2.2-1_mipsel.deb) ...
+Selecting previously unselected package libxt6:mipsel.
+Unpacking libxt6:mipsel (from .../libxt6_1%3a1.1.3-1_mipsel.deb) ...
+Selecting previously unselected package libmpc3:mipsel.
+Unpacking libmpc3:mipsel (from .../libmpc3_1.0.1-1_mipsel.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_1%3a5.14-1_mipsel.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_mipsel.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
+Preparing to replace libstdc++6-4.6-dev 4.6.3-15 (using .../libstdc++6-4.6-dev_4.6.4-2_mipsel.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.3-15 (using .../g++-4.6_4.6.4-2_mipsel.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.3-15 (using .../gcc-4.6_4.6.4-2_mipsel.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace cpp-4.6 4.6.3-15 (using .../cpp-4.6_4.6.4-2_mipsel.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace gcc-4.6-base:mipsel 4.6.3-15 (using .../gcc-4.6-base_4.6.4-2_mipsel.deb) ...
+Unpacking replacement gcc-4.6-base:mipsel ...
+Selecting previously unselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_mipsel.deb) ...
+Selecting previously unselected package libasprintf-dev:mipsel.
+Unpacking libasprintf-dev:mipsel (from .../libasprintf-dev_0.18.1.1-10_mipsel.deb) ...
+Selecting previously unselected package libgettextpo-dev:mipsel.
+Unpacking libgettextpo-dev:mipsel (from .../libgettextpo-dev_0.18.1.1-10_mipsel.deb) ...
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-10_mipsel.deb) ...
+Selecting previously unselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously unselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_9.20130518_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.4-2_mipsel.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.3-8_mipsel.deb) ...
+Selecting previously unselected package libblas3.
+Unpacking libblas3 (from .../libblas3_1.2.20110419-5_mipsel.deb) ...
+Selecting previously unselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_mipsel.deb) ...
+Selecting previously unselected package libbz2-dev:mipsel.
+Unpacking libbz2-dev:mipsel (from .../libbz2-dev_1.0.6-4_mipsel.deb) ...
+Selecting previously unselected package libjpeg8-dev:mipsel.
+Unpacking libjpeg8-dev:mipsel (from .../libjpeg8-dev_8d-1_mipsel.deb) ...
+Selecting previously unselected package liblapack3.
+Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_mipsel.deb) ...
+Selecting previously unselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.4.2+dfsg-1_mipsel.deb) ...
+Selecting previously unselected package libtinfo-dev:mipsel.
+Unpacking libtinfo-dev:mipsel (from .../libtinfo-dev_5.9+20130504-1_mipsel.deb) ...
+Selecting previously unselected package libncurses5-dev:mipsel.
+Unpacking libncurses5-dev:mipsel (from .../libncurses5-dev_5.9+20130504-1_mipsel.deb) ...
+Selecting previously unselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_mipsel.deb) ...
+Selecting previously unselected package libpcre3-dev:mipsel.
+Unpacking libpcre3-dev:mipsel (from .../libpcre3-dev_1%3a8.31-2_mipsel.deb) ...
+Selecting previously unselected package zlib1g-dev:mipsel.
+Unpacking zlib1g-dev:mipsel (from .../zlib1g-dev_1%3a1.2.8.dfsg-1_mipsel.deb) ...
+Selecting previously unselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_mipsel.deb) ...
+Selecting previously unselected package libreadline6-dev:mipsel.
+Unpacking libreadline6-dev:mipsel (from .../libreadline6-dev_6.2+dfsg-0.1_mipsel.deb) ...
+Selecting previously unselected package libreadline-dev:mipsel.
+Unpacking libreadline-dev:mipsel (from .../libreadline-dev_6.2+dfsg-0.1_mipsel.deb) ...
+Selecting previously unselected package zip.
+Unpacking zip (from .../archives/zip_3.0-7_mipsel.deb) ...
+Selecting previously unselected package unzip.
+Unpacking unzip (from .../unzip_6.0-9_mipsel.deb) ...
+Selecting previously unselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
+Selecting previously unselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_mipsel.deb) ...
+Selecting previously unselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_mipsel.deb) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_3.0.1~20130512-1_mipsel.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_3.0.1~20130512-1_all.deb) ...
+Selecting previously unselected package r-bioc-limma.
+Unpacking r-bioc-limma (from .../r-bioc-limma_3.16.3~dfsg-1_mipsel.deb) ...
+Setting up libgomp1:mipsel (4.8.0-7) ...
+Setting up libpipeline1:mipsel (1.2.3-1) ...
+Setting up groff-base (1.22.2-2) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.3-6) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:mipsel (0.18.1.1-10) ...
+Setting up libmagic1:mipsel (1:5.14-1) ...
+Setting up libxml2:mipsel (2.8.0+dfsg1-7+nmu1) ...
+Setting up libexpat1:mipsel (2.1.0-3) ...
+Setting up libfreetype6:mipsel (2.4.9-1.1) ...
+Setting up ucf (3.0027) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:mipsel (2.9.0-7.1) ...
+Setting up libpixman-1-0:mipsel (0.26.0-4) ...
+Setting up libpng12-0:mipsel (1.2.49-4) ...
+Setting up libxau6:mipsel (1:1.0.7-1) ...
+Setting up libxdmcp6:mipsel (1:1.1.1-1) ...
+Setting up libxcb1:mipsel (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:mipsel (2:1.5.0-1) ...
+Setting up libxcb-render0:mipsel (1.8.1-2) ...
+Setting up libxcb-shm0:mipsel (1.8.1-2) ...
+Setting up libxext6:mipsel (2:1.3.1-2) ...
+Setting up libxrender1:mipsel (1:0.9.7-1) ...
+Setting up libcairo2:mipsel (1.12.14-4) ...
+Setting up libffi6:mipsel (3.0.13-4) ...
+Setting up libglib2.0-0:mipsel (2.36.1-2build1) ...
+No schema files found: doing nothing.
+Setting up libcroco3:mipsel (0.6.8-2) ...
+Setting up libdatrie1:mipsel (0.2.6-2) ...
+Setting up libunistring0:mipsel (0.9.3-5) ...
+Setting up libgettextpo0:mipsel (0.18.1.1-10) ...
+Setting up libgfortran3:mipsel (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6:mipsel (2:1.0.8-2) ...
+Setting up libjpeg8:mipsel (8d-1) ...
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:mipsel (0.1.19-2) ...
+Setting up libxft2:mipsel (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
+Regenerating fonts cache... done.
+Setting up libpango1.0-0:mipsel (1.30.0-1) ...
+Setting up libpaper1:mipsel (1.1.24+nmu2) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpcrecpp0:mipsel (1:8.31-2) ...
+Setting up libsm6:mipsel (2:1.2.1-2) ...
+Setting up libjbig0:mipsel (2.0-2) ...
+Setting up libtiff5:mipsel (4.0.2-6) ...
+Setting up libxss1:mipsel (1:1.2.2-1) ...
+Setting up libxt6:mipsel (1:1.1.3-1) ...
+Setting up libmpc3:mipsel (1.0.1-1) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
+Setting up gcc-4.6-base:mipsel (4.6.4-2) ...
+Setting up cpp-4.6 (4.6.4-2) ...
+Setting up gcc-4.6 (4.6.4-2) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libasprintf-dev:mipsel (0.18.1.1-10) ...
+Setting up libgettextpo-dev:mipsel (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20130518) ...
+Setting up gfortran-4.6 (4.6.4-2) ...
+Setting up gfortran (4:4.6.3-8) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:mipsel (1.0.6-4) ...
+Setting up libjpeg8-dev:mipsel (8d-1) ...
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:mipsel (5.9+20130504-1) ...
+Setting up libncurses5-dev:mipsel (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:mipsel (1:8.31-2) ...
+Setting up zlib1g-dev:mipsel (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:mipsel (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:mipsel (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.1~20130512-1) ...
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (3.0.1~20130512-1) ...
+Setting up r-bioc-limma (3.16.3~dfsg-1) ...
+Setting up g++-4.6 (4.6.4-2) ...
+Setting up libstdc++6-4.6-dev (4.6.4-2) ...
+Removing negative dependencies:
+Checking correctness of source dependencies...
+Kernel: Linux 2.6.36-rc6-loongson-2f mipsel (mips64)
+Toolchain package versions: libc6-dev_2.13-38 dpkg-dev_1.16.10 linux-libc-dev_3.2.41-2 gcc-4.6_4.6.4-2 g++-4.6_4.6.4-2 binutils_2.22-8 libstdc++6-4.6-dev_4.6.4-2 libstdc++6_4.8.0-7
+Package versions: apt_0.9.8 base-files_7.2 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.20-3 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2 dash_0.5.7-3 debconf_1.5.50 debconf-english_1.5.38 debfoster_2.7-1.2 debhelper_9.20130518 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 eatmydata_26-2 fakeroot_1.18.4-2 fi [...]
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Fri May 17 13:25:10 2013 UTC using DSA key ID C09FD35A
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-edger_3.2.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-edger in r-bioc-edger-3.2.3~dfsg
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg-1.debian.tar.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: source package r-bioc-edger
+dpkg-buildpackage: source version 3.2.3~dfsg-1
+ dpkg-source --before-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: host architecture mipsel
+ /usr/bin/fakeroot debian/rules clean
+test -x debian/rules
+dh_testroot
+dh_clean
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build-arch
+test -x debian/rules
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+ /usr/bin/fakeroot debian/rules binary-arch
+test -x debian/rules
+dh_testroot
+dh_prep
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+dh_installdirs -A
+ install -d debian/r-bioc-edger
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-edger/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 3.0.1~20130512-1)" >> debian/r-bioc-edger.substvars
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'edgeR' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/src'
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c R_exact_test_by_deviance.cpp -o R_exact_test_by_deviance.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c R_loess_by_col.cpp -o R_loess_by_col.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c R_cr_adjust.cpp -o R_cr_adjust.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c R_levenberg.cpp -o R_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c R_maximize_interpolant.cpp -o R_maximize_interpolant.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c R_one_group.cpp -o R_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c R_simple_good_turing.cpp -o R_simple_good_turing.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c core/adj_coxreid.cpp -o core/adj_coxreid.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c core/glm_levenberg.cpp -o core/glm_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c core/glm_one_group.cpp -o core/glm_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c core/interpolator.cpp -o core/interpolator.o
+gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -g0 -g -c core/fmm_spline.c -o core/fmm_spline.o
+g++ -shared -o edgeR.so R_exact_test_by_deviance.o R_loess_by_col.o R_cr_adjust.o R_levenberg.o R_maximize_interpolant.o R_one_group.o R_simple_good_turing.o core/adj_coxreid.o core/glm_levenberg.o core/glm_one_group.o core/interpolator.o core/fmm_spline.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/src'
+installing to /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs
+** R
+** data
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices
+** installing vignettes
+** testing if installed package can be loaded
+* DONE (edgeR)
+rm -vf /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/COPYING \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides/r-bioc-edger; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-edger.substvars
+dh_installdirs -pr-bioc-edger
+chmod 644 debian/r-bioc-edger/usr/lib/R/site-library/edgeR/doc/*
+dh_installdocs -pr-bioc-edger
+ install -g 0 -o 0 -d debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/doc/r-bioc-edger \;
+ cp -a debian/README.test debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ chown -R 0:0 debian/r-bioc-edger/usr/share/doc
+ chmod -R go=rX debian/r-bioc-edger/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-edger/usr/share/doc
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-edger/usr/share/doc/r-bioc-edger/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-edger/usr/share/doc/r-bioc-edger/copyright
+dh_installexamples -pr-bioc-edger
+dh_installman -pr-bioc-edger
+dh_installinfo -pr-bioc-edger
+dh_installmenu -pr-bioc-edger
+dh_installcron -pr-bioc-edger
+dh_installinit -pr-bioc-edger
+dh_installdebconf -pr-bioc-edger
+ install -o 0 -g 0 -d debian/r-bioc-edger/DEBIAN
+dh_installemacsen -pr-bioc-edger
+dh_installcatalogs -pr-bioc-edger
+ grep -s -v '^misc:Depends=' debian/r-bioc-edger.substvars > debian/r-bioc-edger.substvars.new || true
+ mv debian/r-bioc-edger.substvars.new debian/r-bioc-edger.substvars
+dh_installpam -pr-bioc-edger
+dh_installlogrotate -pr-bioc-edger
+dh_installlogcheck -pr-bioc-edger
+dh_installchangelogs -pr-bioc-edger
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-edger/usr/share/doc/r-bioc-edger/changelog.Debian
+dh_installudev -pr-bioc-edger
+dh_lintian -pr-bioc-edger
+dh_bugfiles -pr-bioc-edger
+dh_install -pr-bioc-edger
+dh_link -pr-bioc-edger
+dh_installmime -pr-bioc-edger
+dh_installgsettings -pr-bioc-edger
+dh_strip -pr-bioc-edger
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dh_compress -pr-bioc-edger
+ cd debian/r-bioc-edger
+ chmod a-x usr/share/doc/r-bioc-edger/changelog.Debian usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save
+ gzip -9nf usr/share/doc/r-bioc-edger/changelog.Debian usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save
+ cd '/build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT/r-bioc-edger-3.2.3~dfsg'
+dh_fixperms -pr-bioc-edger
+ find debian/r-bioc-edger -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-edger ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-edger/usr/share/doc -type f ! -regex 'debian/r-bioc-edger/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-edger/usr/share/man debian/r-bioc-edger/usr/man/ debian/r-bioc-edger/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/lib/perl5 debian/r-bioc-edger/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-edger/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
+dh_makeshlibs -pr-bioc-edger
+ rm -f debian/r-bioc-edger/DEBIAN/shlibs
+dh_installdeb -pr-bioc-edger
+dh_perl -pr-bioc-edger
+dh_shlibdeps -pr-bioc-edger
+ dpkg-shlibdeps -Tdebian/r-bioc-edger.substvars debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so was not linked against libgfortran.so.3 (it uses none of the library's symbols)
+dh_gencontrol -pr-bioc-edger
+ echo misc:Depends= >> debian/r-bioc-edger.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-edger.substvars -Pdebian/r-bioc-edger
+ chmod 644 debian/r-bioc-edger/DEBIAN/control
+ chown 0:0 debian/r-bioc-edger/DEBIAN/control
+dh_md5sums -pr-bioc-edger
+ (cd debian/r-bioc-edger >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-edger/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-edger/DEBIAN/md5sums
+dh_builddeb -pr-bioc-edger -- -Z xz
+ dpkg-deb -Z xz --build debian/r-bioc-edger ..
+dpkg-deb: building package `r-bioc-edger' in `../r-bioc-edger_3.2.3~dfsg-1_mipsel.deb'.
+ dpkg-genchanges -B -mmipsel Build Daemon (phrixos) <buildd_mipsel-phrixos at buildd.debian.org> >../r-bioc-edger_3.2.3~dfsg-1_mipsel.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20130519-0417
+
+r-bioc-edger_3.2.3~dfsg-1_mipsel.changes:
+Format: 1.8
+Date: Fri, 17 May 2013 14:36:51 +0200
+Source: r-bioc-edger
+Binary: r-bioc-edger
+Architecture: mipsel
+Version: 3.2.3~dfsg-1
+Distribution: sid
+Urgency: low
+Maintainer: mipsel Build Daemon (phrixos) <buildd_mipsel-phrixos at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
+Description:
+ r-bioc-edger - Empirical analysis of digital gene expression data in R
+Changes:
+ r-bioc-edger (3.2.3~dfsg-1) unstable; urgency=low
+ .
+ [ Charles Plessy ]
+ 74f1a5f Imported Upstream version 2.6.10~dfsg
+ d2d70ab Corrected VCS URLs.
+ 44c9d4e Regression tests for autopkgtest.
+ .
+ [ Andreas Tille ]
+ * Imported new upstream version 3.2.3~dfsg
+ * debian/control
+ - Added myself as Uploader
+ - Add ${shlibs:Depends} to ensure dependency from libc
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - normalised format
+ - Removed unneeded Pre-Depends: dpkg (>= 1.15.6)
+ - Removed versioned dependency of r-base-dev
+ - Package is "Architecture: any" (rather than all)
+ * debian/source/format: Add explicit source format specification
+ * debian/copyright:
+ - Update Source location
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - Add years to Copyright field
+ * debian/upstream: inst/CITATION asks for citing this more recent
+ paper that is now on top of debian/upstream
+ * debian/rules: remove executable flag from installed documentation
+Checksums-Sha1:
+ e2ab93d2c0b72099905f19fd3bdb8d3571ebb92f 1367034 r-bioc-edger_3.2.3~dfsg-1_mipsel.deb
+Checksums-Sha256:
+ 00622ad05a85a3b481d4ce2351895dde48840383f084a28a2a0b7e947e54f18a 1367034 r-bioc-edger_3.2.3~dfsg-1_mipsel.deb
+Files:
+ 2635537df7b0e5098be145e9d6d0a990 1367034 gnu-r optional r-bioc-edger_3.2.3~dfsg-1_mipsel.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-edger_3.2.3~dfsg-1_mipsel.deb
+────────────────────────────────────
+
+ new debian package, version 2.0.
+ size 1367034 bytes: control archive= 1878 bytes.
+ 967 bytes, 17 lines control
+ 2932 bytes, 38 lines md5sums
+ Package: r-bioc-edger
+ Version: 3.2.3~dfsg-1
+ Architecture: mipsel
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 2537
+ Depends: r-base-core (>= 3.0.1~20130512-1), r-bioc-limma, libblas3 | libblas.so.3 | libatlas3-base, libc6 (>= 2.2), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3), liblapack3 | liblapack.so.3 | libatlas3-base, libstdc++6 (>= 4.1.1)
+ Suggests: r-cran-mass
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
+ Description: Empirical analysis of digital gene expression data in R
+ Bioconductor package for differential expression analysis of whole
+ transcriptome sequencing (RNA-seq) and digital gene expression
+ profiles with biological replication. It uses empirical Bayes
+ estimation and exact tests based on the negative binomial
+ distribution. It is also useful for differential signal analysis with
+ other types of genome-scale count data.
+
+drwxr-xr-x root/root 0 2013-05-19 04:17 ./
+drwxr-xr-x root/root 0 2013-05-19 04:17 ./usr/
+drwxr-xr-x root/root 0 2013-05-19 04:17 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-19 04:17 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-19 04:17 ./usr/share/doc/r-bioc-edger/
+drwxr-xr-x root/root 0 2013-05-19 04:17 ./usr/share/doc/r-bioc-edger/tests/
+-rw-r--r-- root/root 5706 2013-04-08 00:02 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save.gz
+-rw-r--r-- root/root 1392 2013-04-03 22:17 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R.gz
+-rw-r--r-- root/root 274 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.Debian
+-rw-r--r-- root/root 816 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.test
+-rw-r--r-- root/root 1404 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/copyright
+-rw-r--r-- root/root 1384 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/changelog.Debian.gz
+drwxr-xr-x root/root 0 2013-05-19 04:15 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-19 04:15 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-19 04:17 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-19 04:17 ./usr/lib/R/site-library/edgeR/
+-rw-r--r-- root/root 1113 2013-05-19 04:15 ./usr/lib/R/site-library/edgeR/DESCRIPTION
+-rw-r--r-- root/root 6834 2013-05-19 04:17 ./usr/lib/R/site-library/edgeR/INDEX
+drwxr-xr-x root/root 0 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/help/
+-rw-r--r-- root/root 230630 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/help/edgeR.rdb
+-rw-r--r-- root/root 1342 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/help/aliases.rds
+-rw-r--r-- root/root 798 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/help/paths.rds
+-rw-r--r-- root/root 3776 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/help/AnIndex
+-rw-r--r-- root/root 1769 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/help/edgeR.rdx
+-rw-r--r-- root/root 2057 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/CITATION
+drwxr-xr-x root/root 0 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/R/
+-rw-r--r-- root/root 116072 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/R/edgeR.rdb
+-rw-r--r-- root/root 2292 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/R/edgeR.rdx
+-rw-r--r-- root/root 1056 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/R/edgeR
+drwxr-xr-x root/root 0 2013-05-19 04:17 ./usr/lib/R/site-library/edgeR/libs/
+-rw-r--r-- root/root 105056 2013-05-19 04:17 ./usr/lib/R/site-library/edgeR/libs/edgeR.so
+drwxr-xr-x root/root 0 2013-05-19 04:17 ./usr/lib/R/site-library/edgeR/doc/
+-rw-r--r-- root/root 1826 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/doc/edgeR.Rnw
+-rw-r--r-- root/root 49354 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/doc/edgeR.pdf
+-rw-r--r-- root/root 879697 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/doc/edgeRUsersGuide.pdf
+-rw-r--r-- root/root 691 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/doc/index.html
+drwxr-xr-x root/root 0 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/html/
+-rw-r--r-- root/root 22781 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/html/00Index.html
+-rw-r--r-- root/root 1179 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/html/R.css
+drwxr-xr-x root/root 0 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/data/
+-rw-r--r-- root/root 248500 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/data/NC1.txt
+-rw-r--r-- root/root 263571 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/data/Tu98.txt
+-rw-r--r-- root/root 228426 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/data/NC2.txt
+-rw-r--r-- root/root 318545 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/data/Tu102.txt
+-rw-r--r-- root/root 19 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/data/datalist
+-rw-r--r-- root/root 13746 2013-05-19 04:16 ./usr/lib/R/site-library/edgeR/NEWS.Rd
+-rw-r--r-- root/root 804 2013-05-19 04:15 ./usr/lib/R/site-library/edgeR/NAMESPACE
+drwxr-xr-x root/root 0 2013-05-19 04:17 ./usr/lib/R/site-library/edgeR/Meta/
+-rw-r--r-- root/root 368 2013-05-19 04:17 ./usr/lib/R/site-library/edgeR/Meta/nsInfo.rds
+-rw-r--r-- root/root 996 2013-05-19 04:15 ./usr/lib/R/site-library/edgeR/Meta/package.rds
+-rw-r--r-- root/root 3475 2013-05-19 04:17 ./usr/lib/R/site-library/edgeR/Meta/hsearch.rds
+-rw-r--r-- root/root 228 2013-05-19 04:17 ./usr/lib/R/site-library/edgeR/Meta/vignette.rds
+-rw-r--r-- root/root 161 2013-05-19 04:17 ./usr/lib/R/site-library/edgeR/Meta/data.rds
+-rw-r--r-- root/root 3639 2013-05-19 04:17 ./usr/lib/R/site-library/edgeR/Meta/Rd.rds
+-rw-r--r-- root/root 1640 2013-05-19 04:17 ./usr/lib/R/site-library/edgeR/Meta/links.rds
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+Purging /var/lib/schroot/mount/sid-mipsel-sbuild-3dbe02a6-f490-4402-84c0-399e3cc009b4/build/buildd-r-bioc-edger_3.2.3~dfsg-1-mipsel-g1l4sT
+Not removing build depends: cloned chroot in use
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20130519-0417
+Build needed 00:07:59, 6928k disc space
+
diff --git a/powerpc.log b/powerpc.log
new file mode 100644
index 0000000..661107b
--- /dev/null
+++ b/powerpc.log
@@ -0,0 +1,1010 @@
+From buildd at porpora.debian.org Fri May 17 13:51:13 2013
+Return-path: <buildd at porpora.debian.org>
+Received: from muffat.debian.org ([206.12.19.146])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=muffat.debian.org, EMAIL=hostmaster at muffat.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:DHE_RSA_AES_128_CBC_SHA1:16)
+ (Exim 4.72) (envelope-from <buildd at porpora.debian.org>)
+ id 1UdL3x-0003tP-1z
+ for logs at buildd.debian.org; Fri, 17 May 2013 13:51:13 +0000
+Received: from porpora.ynic.york.ac.uk ([144.32.168.78]
+ helo=porpora.debian.org)
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=porpora.debian.org, EMAIL=hostmaster at porpora.debian.org (verified)
+ by muffat.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:256)
+ (Exim 4.80) (envelope-from <buildd at porpora.debian.org>)
+ id 1UdL3u-0002vJ-60; Fri, 17 May 2013 13:51:10 +0000
+Received: from buildd by porpora.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at porpora.debian.org>)
+ id 1UdL3s-0007n4-5y; Fri, 17 May 2013 13:51:08 +0000
+Message-Id: <E1UdL3s-0007n4-5y at porpora.debian.org>
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
+Date: Fri, 17 May 2013 13:51:08 +0000
+From: buildd on porpora <buildd at porpora.debian.org>
+To: phil+buildd at philkern.de,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-edger_3.2.3~dfsg-1 on powerpc
+ (dist=sid)
+Key-Id: EABF3A35
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on porpora.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-edger 3.2.3~dfsg-1 (powerpc) 17 May 2013 13:45 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-edger
+Version: 3.2.3~dfsg-1
+Source Version: 3.2.3~dfsg-1
+Architecture: powerpc
+Get:1 http://ftp.uk.debian.org unstable Release.gpg [1571 B]
+Get:2 http://ftp.uk.debian.org unstable Release [203 kB]
+Get:3 http://incoming.debian.org unstable Release.gpg [1571 B]
+Get:4 http://incoming.debian.org buildd-unstable Release.gpg [1571 B]
+Get:5 http://incoming.debian.org unstable Release [203 kB]
+Get:6 http://ftp.uk.debian.org unstable/main Sources [6729 kB]
+Get:7 http://incoming.debian.org buildd-unstable Release [109 kB]
+Get:8 http://incoming.debian.org unstable/main Sources [6729 kB]
+Get:9 http://ftp.uk.debian.org unstable/contrib Sources [53.7 kB]
+Get:10 http://ftp.uk.debian.org unstable/non-free Sources [103 kB]
+Get:11 http://ftp.uk.debian.org unstable/main powerpc Packages [6288 kB]
+Get:12 http://ftp.uk.debian.org unstable/contrib powerpc Packages [37.1 kB]
+Get:13 http://incoming.debian.org unstable/contrib Sources [53.7 kB]
+Get:14 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:15 http://incoming.debian.org unstable/main powerpc Packages [6288 kB]
+Get:16 http://incoming.debian.org unstable/contrib powerpc Packages [37.1 kB]
+Get:17 http://incoming.debian.org buildd-unstable/main Sources [103 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib Sources [873 B]
+Get:19 http://incoming.debian.org buildd-unstable/non-free Sources [2683 B]
+Get:20 http://incoming.debian.org buildd-unstable/main powerpc Packages [65.6 kB]
+Get:21 http://incoming.debian.org buildd-unstable/contrib powerpc Packages [14 B]
+Fetched 27.1 MB in 1min 21s (331 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-edger' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/debian-med/r-bioc-edger.git
+Need to get 1218 kB of source archives.
+Get:1 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-bioc-edger 3.2.3~dfsg-1 (dsc) [1445 B]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-bioc-edger 3.2.3~dfsg-1 (tar) [1212 kB]
+Get:3 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-bioc-edger 3.2.3~dfsg-1 (diff) [4311 B]
+Fetched 1218 kB in 3s (311 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.6)
+fakeroot: already installed (1.18.4-2)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 36 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 36 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-edger build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev, r-bioc-limma
+Checking for already installed dependencies...
+base-files: already installed (7.1)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2+dfsg-1)
+bsdutils: already installed (1:2.20.1-5.3)
+coreutils: already installed (8.13-3.2)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1.1)
+findutils: already installed (4.4.2-5)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+libc-bin: already installed (2.13-38)
+login: already installed (1:4.1.5.1-1)
+mount: already installed (2.20.1-5.3)
+ncurses-base: already installed (5.9-10)
+ncurses-bin: already installed (5.9-10)
+perl-base: already installed (5.14.2-21)
+sed: already installed (4.2.1-10)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-5)
+util-linux: already installed (2.20.1-5.3)
+libc6-dev: already installed (2.13-38)
+gcc: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
+debhelper: missing
+Using default version 9.20130516
+cdbs: missing
+r-base-dev: missing
+r-bioc-limma: missing
+Checking for dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev r-bioc-limma
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ bsdmainutils cpp-4.6 file fontconfig fontconfig-config fonts-dejavu-core
+ g++-4.6 gcc-4.6 gcc-4.6-base gcc-4.8-base gettext gettext-base gfortran
+ gfortran-4.6 groff-base html2text intltool-debian libasprintf-dev
+ libasprintf0c2 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6 libc6-dev
+ libcairo2 libcroco3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6
+ libgettextpo-dev libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libmpc3 libncurses5
+ libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev
+ libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libstdc++6-4.6-dev libthai-data
+ libthai0 libtiff5 libtinfo-dev libtinfo5 libunistring0 libx11-6 libx11-data
+ libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
+ libxml2 libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf r-base-core
+ tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g
+ zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make
+ g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ libcloog-ppl0 libppl-c2 libppl7 binutils-gold gettext-doc gfortran-multilib
+ gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff
+ glibc-doc ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp
+ ttf-arphic-gkai00mp ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base
+ texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
+ texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
+ texlive-latex-extra texinfo texi2html tcl-tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev curl wget lynx-cur autopoint manpages-dev libglib2.0-data
+ shared-mime-info libgpm2 xml-core libmail-sendmail-perl r-recommended
+ r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper file fontconfig fontconfig-config
+ fonts-dejavu-core gcc-4.8-base gettext gettext-base gfortran gfortran-4.6
+ groff-base html2text intltool-debian libasprintf-dev libasprintf0c2
+ libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libffi6 libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0
+ libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3 libmagic1 libmpc3 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 libx11-6
+ libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
+ libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
+ r-base-dev r-bioc-limma tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libc-dev-bin libc6 libc6-dev
+ libncurses5 libstdc++6-4.6-dev libtinfo5 ncurses-bin zlib1g
+12 upgraded, 85 newly installed, 0 to remove and 24 not upgraded.
+Need to get 85.3 MB/85.4 MB of archives.
+After this operation, 121 MB of additional disk space will be used.
+Get:1 http://ftp.uk.debian.org/debian/ unstable/main libc6-dev powerpc 2.17-3 [2950 kB]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main libcroco3 powerpc 0.6.8-2 [122 kB]
+Get:3 http://ftp.uk.debian.org/debian/ unstable/main libc-dev-bin powerpc 2.17-3 [231 kB]
+Get:4 http://ftp.uk.debian.org/debian/ unstable/main libc6 powerpc 2.17-3 [4473 kB]
+Get:5 http://ftp.uk.debian.org/debian/ unstable/main libtinfo5 powerpc 5.9+20130504-1 [293 kB]
+Get:6 http://ftp.uk.debian.org/debian/ unstable/main libncurses5 powerpc 5.9+20130504-1 [105 kB]
+Get:7 http://ftp.uk.debian.org/debian/ unstable/main ncurses-bin powerpc 5.9+20130504-1 [359 kB]
+Get:8 http://ftp.uk.debian.org/debian/ unstable/main zlib1g powerpc 1:1.2.8.dfsg-1 [88.3 kB]
+Get:9 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 powerpc 1.2.3-1 [39.5 kB]
+Get:10 http://ftp.uk.debian.org/debian/ unstable/main groff-base powerpc 1.22.2-2 [727 kB]
+Get:11 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils powerpc 9.0.5 [211 kB]
+Get:12 http://ftp.uk.debian.org/debian/ unstable/main man-db powerpc 2.6.3-6 [873 kB]
+Get:13 http://ftp.uk.debian.org/debian/ unstable/main libasprintf0c2 powerpc 0.18.1.1-10 [27.4 kB]
+Get:14 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 powerpc 1:5.14-1 [215 kB]
+Get:15 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 powerpc 1:8.31-2 [246 kB]
+Get:16 http://ftp.uk.debian.org/debian/ unstable/main libxml2 powerpc 2.8.0+dfsg1-7+nmu1 [852 kB]
+Get:17 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 powerpc 2.1.0-3 [143 kB]
+Get:18 http://ftp.uk.debian.org/debian/ unstable/main libfreetype6 powerpc 2.4.9-1.1 [431 kB]
+Get:19 http://ftp.uk.debian.org/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
+Get:20 http://ftp.uk.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
+Get:21 http://ftp.uk.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:22 http://ftp.uk.debian.org/debian/ unstable/main libfontconfig1 powerpc 2.9.0-7.1 [297 kB]
+Get:23 http://ftp.uk.debian.org/debian/ unstable/main libpixman-1-0 powerpc 0.26.0-4 [384 kB]
+Get:24 http://ftp.uk.debian.org/debian/ unstable/main libpng12-0 powerpc 1.2.49-4 [186 kB]
+Get:25 http://ftp.uk.debian.org/debian/ unstable/main libxau6 powerpc 1:1.0.7-1 [18.5 kB]
+Get:26 http://ftp.uk.debian.org/debian/ unstable/main libxdmcp6 powerpc 1:1.1.1-1 [25.9 kB]
+Get:27 http://ftp.uk.debian.org/debian/ unstable/main libxcb1 powerpc 1.8.1-2 [45.7 kB]
+Get:28 http://ftp.uk.debian.org/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:29 http://ftp.uk.debian.org/debian/ unstable/main libx11-6 powerpc 2:1.5.0-1 [880 kB]
+Get:30 http://ftp.uk.debian.org/debian/ unstable/main libxcb-render0 powerpc 1.8.1-2 [17.4 kB]
+Get:31 http://ftp.uk.debian.org/debian/ unstable/main libxcb-shm0 powerpc 1.8.1-2 [10.3 kB]
+Get:32 http://ftp.uk.debian.org/debian/ unstable/main libxext6 powerpc 2:1.3.1-2 [52.1 kB]
+Get:33 http://ftp.uk.debian.org/debian/ unstable/main libxrender1 powerpc 1:0.9.7-1 [31.6 kB]
+Get:34 http://ftp.uk.debian.org/debian/ unstable/main libcairo2 powerpc 1.12.14-4 [993 kB]
+Get:35 http://ftp.uk.debian.org/debian/ unstable/main libffi6 powerpc 3.0.13-4 [22.3 kB]
+Get:36 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 powerpc 2.36.1-2build1 [1922 kB]
+Get:37 http://ftp.uk.debian.org/debian/ unstable/main libdatrie1 powerpc 0.2.6-2 [28.8 kB]
+Get:38 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 powerpc 0.9.3-5 [421 kB]
+Get:39 http://ftp.uk.debian.org/debian/ unstable/main libgettextpo0 powerpc 0.18.1.1-10 [138 kB]
+Get:40 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.8-base powerpc 4.8.0-7 [148 kB]
+Get:41 http://ftp.uk.debian.org/debian/ unstable/main libgfortran3 powerpc 4.8.0-7 [278 kB]
+Get:42 http://ftp.uk.debian.org/debian/ unstable/main x11-common all 1:7.7+3 [284 kB]
+Get:43 http://ftp.uk.debian.org/debian/ unstable/main libice6 powerpc 2:1.0.8-2 [59.7 kB]
+Get:44 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8 powerpc 8d-1 [130 kB]
+Get:45 http://ftp.uk.debian.org/debian/ unstable/main libthai-data all 0.1.19-2 [156 kB]
+Get:46 http://ftp.uk.debian.org/debian/ unstable/main libthai0 powerpc 0.1.19-2 [41.9 kB]
+Get:47 http://ftp.uk.debian.org/debian/ unstable/main libxft2 powerpc 2.3.1-1 [60.6 kB]
+Get:48 http://ftp.uk.debian.org/debian/ unstable/main fontconfig powerpc 2.9.0-7.1 [347 kB]
+Get:49 http://ftp.uk.debian.org/debian/ unstable/main libpango1.0-0 powerpc 1.30.0-1 [451 kB]
+Get:50 http://ftp.uk.debian.org/debian/ unstable/main libpaper1 powerpc 1.1.24+nmu2 [21.7 kB]
+Get:51 http://ftp.uk.debian.org/debian/ unstable/main libpcrecpp0 powerpc 1:8.31-2 [129 kB]
+Get:52 http://ftp.uk.debian.org/debian/ unstable/main libsm6 powerpc 2:1.2.1-2 [33.2 kB]
+Get:53 http://ftp.uk.debian.org/debian/ unstable/main libjbig0 powerpc 2.0-2 [31.9 kB]
+Get:54 http://ftp.uk.debian.org/debian/ unstable/main libtiff5 powerpc 4.0.2-6 [238 kB]
+Get:55 http://ftp.uk.debian.org/debian/ unstable/main libxss1 powerpc 1:1.2.2-1 [17.3 kB]
+Get:56 http://ftp.uk.debian.org/debian/ unstable/main libxt6 powerpc 1:1.1.3-1 [196 kB]
+Get:57 http://ftp.uk.debian.org/debian/ unstable/main libmpc3 powerpc 1.0.1-1 [44.7 kB]
+Get:58 http://ftp.uk.debian.org/debian/ unstable/main file powerpc 1:5.14-1 [54.1 kB]
+Get:59 http://ftp.uk.debian.org/debian/ unstable/main gettext-base powerpc 0.18.1.1-10 [130 kB]
+Get:60 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.121 [80.5 kB]
+Get:61 http://ftp.uk.debian.org/debian/ unstable/main libstdc++6-4.6-dev powerpc 4.6.4-2 [1699 kB]
+Get:62 http://ftp.uk.debian.org/debian/ unstable/main g++-4.6 powerpc 4.6.4-2 [6599 kB]
+Get:63 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6 powerpc 4.6.4-2 [4885 kB]
+Get:64 http://ftp.uk.debian.org/debian/ unstable/main cpp-4.6 powerpc 4.6.4-2 [4537 kB]
+Get:65 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6-base powerpc 4.6.4-2 [143 kB]
+Get:66 http://ftp.uk.debian.org/debian/ unstable/main html2text powerpc 1.3.2a-15 [105 kB]
+Get:67 http://ftp.uk.debian.org/debian/ unstable/main libasprintf-dev powerpc 0.18.1.1-10 [26.9 kB]
+Get:68 http://ftp.uk.debian.org/debian/ unstable/main libgettextpo-dev powerpc 0.18.1.1-10 [184 kB]
+Get:69 http://ftp.uk.debian.org/debian/ unstable/main gettext powerpc 0.18.1.1-10 [1766 kB]
+Get:70 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:71 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:72 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 9.20130516 [708 kB]
+Get:73 http://ftp.uk.debian.org/debian/ unstable/main gfortran-4.6 powerpc 4.6.4-2 [5190 kB]
+Get:74 http://ftp.uk.debian.org/debian/ unstable/main gfortran powerpc 4:4.6.3-8 [1136 B]
+Get:75 http://ftp.uk.debian.org/debian/ unstable/main libblas3 powerpc 1.2.20110419-5 [192 kB]
+Get:76 http://ftp.uk.debian.org/debian/ unstable/main libblas-dev powerpc 1.2.20110419-5 [204 kB]
+Get:77 http://ftp.uk.debian.org/debian/ unstable/main libbz2-dev powerpc 1.0.6-4 [35.5 kB]
+Get:78 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8-dev powerpc 8d-1 [236 kB]
+Get:79 http://ftp.uk.debian.org/debian/ unstable/main liblapack3 powerpc 3.4.2+dfsg-1 [4105 kB]
+Get:80 http://ftp.uk.debian.org/debian/ unstable/main liblapack-dev powerpc 3.4.2+dfsg-1 [4363 kB]
+Get:81 http://ftp.uk.debian.org/debian/ unstable/main libtinfo-dev powerpc 5.9+20130504-1 [107 kB]
+Get:82 http://ftp.uk.debian.org/debian/ unstable/main libncurses5-dev powerpc 5.9+20130504-1 [214 kB]
+Get:83 http://ftp.uk.debian.org/debian/ unstable/main libpaper-utils powerpc 1.1.24+nmu2 [18.2 kB]
+Get:84 http://ftp.uk.debian.org/debian/ unstable/main libpcre3-dev powerpc 1:8.31-2 [363 kB]
+Get:85 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev powerpc 1:1.2.8.dfsg-1 [214 kB]
+Get:86 http://ftp.uk.debian.org/debian/ unstable/main libpng12-dev powerpc 1.2.49-4 [266 kB]
+Get:87 http://ftp.uk.debian.org/debian/ unstable/main libreadline6-dev powerpc 6.2+dfsg-0.1 [187 kB]
+Get:88 http://ftp.uk.debian.org/debian/ unstable/main libreadline-dev powerpc 6.2+dfsg-0.1 [900 B]
+Get:89 http://ftp.uk.debian.org/debian/ unstable/main zip powerpc 3.0-7 [339 kB]
+Get:90 http://ftp.uk.debian.org/debian/ unstable/main unzip powerpc 6.0-9 [191 kB]
+Get:91 http://ftp.uk.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:92 http://ftp.uk.debian.org/debian/ unstable/main tcl8.5 powerpc 8.5.11-2 [1634 kB]
+Get:93 http://ftp.uk.debian.org/debian/ unstable/main tk8.5 powerpc 8.5.11-2 [1174 kB]
+Get:94 http://ftp.uk.debian.org/debian/ unstable/main r-base-core powerpc 3.0.1-1 [21.4 MB]
+Get:95 http://ftp.uk.debian.org/debian/ unstable/main r-base-dev all 3.0.1-1 [3896 B]
+Get:96 http://ftp.uk.debian.org/debian/ unstable/main r-bioc-limma powerpc 3.16.3~dfsg-1 [1618 kB]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 85.3 MB in 46s (1822 kB/s)
+(Reading database ... 10816 files and directories currently installed.)
+Preparing to replace libc6-dev:powerpc 2.13-38 (using .../libc6-dev_2.17-3_powerpc.deb) ...
+Unpacking replacement libc6-dev:powerpc ...
+Preparing to replace libc-dev-bin 2.13-38 (using .../libc-dev-bin_2.17-3_powerpc.deb) ...
+Unpacking replacement libc-dev-bin ...
+Preparing to replace libc6:powerpc 2.13-38 (using .../libc6_2.17-3_powerpc.deb) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Unpacking replacement libc6:powerpc ...
+Setting up libc6:powerpc (2.17-3) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Nothing to restart.
+(Reading database ... 10841 files and directories currently installed.)
+Preparing to replace libtinfo5:powerpc 5.9-10 (using .../libtinfo5_5.9+20130504-1_powerpc.deb) ...
+Unpacking replacement libtinfo5:powerpc ...
+Setting up libtinfo5:powerpc (5.9+20130504-1) ...
+(Reading database ... 10841 files and directories currently installed.)
+Preparing to replace libncurses5:powerpc 5.9-10 (using .../libncurses5_5.9+20130504-1_powerpc.deb) ...
+Unpacking replacement libncurses5:powerpc ...
+Setting up libncurses5:powerpc (5.9+20130504-1) ...
+(Reading database ... 10841 files and directories currently installed.)
+Preparing to replace ncurses-bin 5.9-10 (using .../ncurses-bin_5.9+20130504-1_powerpc.deb) ...
+Unpacking replacement ncurses-bin ...
+Setting up ncurses-bin (5.9+20130504-1) ...
+(Reading database ... 10839 files and directories currently installed.)
+Preparing to replace zlib1g:powerpc 1:1.2.7.dfsg-13 (using .../zlib1g_1%3a1.2.8.dfsg-1_powerpc.deb) ...
+Unpacking replacement zlib1g:powerpc ...
+Setting up zlib1g:powerpc (1:1.2.8.dfsg-1) ...
+Selecting previously unselected package libpipeline1:powerpc.
+(Reading database ... 10839 files and directories currently installed.)
+Unpacking libpipeline1:powerpc (from .../libpipeline1_1.2.3-1_powerpc.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.22.2-2_powerpc.deb) ...
+Selecting previously unselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_powerpc.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.3-6_powerpc.deb) ...
+Selecting previously unselected package libasprintf0c2:powerpc.
+Unpacking libasprintf0c2:powerpc (from .../libasprintf0c2_0.18.1.1-10_powerpc.deb) ...
+Selecting previously unselected package libmagic1:powerpc.
+Unpacking libmagic1:powerpc (from .../libmagic1_1%3a5.14-1_powerpc.deb) ...
+Selecting previously unselected package libpcre3:powerpc.
+Unpacking libpcre3:powerpc (from .../libpcre3_1%3a8.31-2_powerpc.deb) ...
+Selecting previously unselected package libxml2:powerpc.
+Unpacking libxml2:powerpc (from .../libxml2_2.8.0+dfsg1-7+nmu1_powerpc.deb) ...
+Selecting previously unselected package libexpat1:powerpc.
+Unpacking libexpat1:powerpc (from .../libexpat1_2.1.0-3_powerpc.deb) ...
+Selecting previously unselected package libfreetype6:powerpc.
+Unpacking libfreetype6:powerpc (from .../libfreetype6_2.4.9-1.1_powerpc.deb) ...
+Selecting previously unselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ...
+Moving old data out of the way
+Selecting previously unselected package fonts-dejavu-core.
+Unpacking fonts-dejavu-core (from .../fonts-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ...
+Selecting previously unselected package libfontconfig1:powerpc.
+Unpacking libfontconfig1:powerpc (from .../libfontconfig1_2.9.0-7.1_powerpc.deb) ...
+Selecting previously unselected package libpixman-1-0:powerpc.
+Unpacking libpixman-1-0:powerpc (from .../libpixman-1-0_0.26.0-4_powerpc.deb) ...
+Selecting previously unselected package libpng12-0:powerpc.
+Unpacking libpng12-0:powerpc (from .../libpng12-0_1.2.49-4_powerpc.deb) ...
+Selecting previously unselected package libxau6:powerpc.
+Unpacking libxau6:powerpc (from .../libxau6_1%3a1.0.7-1_powerpc.deb) ...
+Selecting previously unselected package libxdmcp6:powerpc.
+Unpacking libxdmcp6:powerpc (from .../libxdmcp6_1%3a1.1.1-1_powerpc.deb) ...
+Selecting previously unselected package libxcb1:powerpc.
+Unpacking libxcb1:powerpc (from .../libxcb1_1.8.1-2_powerpc.deb) ...
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ...
+Selecting previously unselected package libx11-6:powerpc.
+Unpacking libx11-6:powerpc (from .../libx11-6_2%3a1.5.0-1_powerpc.deb) ...
+Selecting previously unselected package libxcb-render0:powerpc.
+Unpacking libxcb-render0:powerpc (from .../libxcb-render0_1.8.1-2_powerpc.deb) ...
+Selecting previously unselected package libxcb-shm0:powerpc.
+Unpacking libxcb-shm0:powerpc (from .../libxcb-shm0_1.8.1-2_powerpc.deb) ...
+Selecting previously unselected package libxext6:powerpc.
+Unpacking libxext6:powerpc (from .../libxext6_2%3a1.3.1-2_powerpc.deb) ...
+Selecting previously unselected package libxrender1:powerpc.
+Unpacking libxrender1:powerpc (from .../libxrender1_1%3a0.9.7-1_powerpc.deb) ...
+Selecting previously unselected package libcairo2:powerpc.
+Unpacking libcairo2:powerpc (from .../libcairo2_1.12.14-4_powerpc.deb) ...
+Selecting previously unselected package libffi6:powerpc.
+Unpacking libffi6:powerpc (from .../libffi6_3.0.13-4_powerpc.deb) ...
+Selecting previously unselected package libglib2.0-0:powerpc.
+Unpacking libglib2.0-0:powerpc (from .../libglib2.0-0_2.36.1-2build1_powerpc.deb) ...
+Selecting previously unselected package libcroco3:powerpc.
+Unpacking libcroco3:powerpc (from .../libcroco3_0.6.8-2_powerpc.deb) ...
+Selecting previously unselected package libdatrie1:powerpc.
+Unpacking libdatrie1:powerpc (from .../libdatrie1_0.2.6-2_powerpc.deb) ...
+Selecting previously unselected package libunistring0:powerpc.
+Unpacking libunistring0:powerpc (from .../libunistring0_0.9.3-5_powerpc.deb) ...
+Selecting previously unselected package libgettextpo0:powerpc.
+Unpacking libgettextpo0:powerpc (from .../libgettextpo0_0.18.1.1-10_powerpc.deb) ...
+Selecting previously unselected package gcc-4.8-base:powerpc.
+Unpacking gcc-4.8-base:powerpc (from .../gcc-4.8-base_4.8.0-7_powerpc.deb) ...
+Selecting previously unselected package libgfortran3:powerpc.
+Unpacking libgfortran3:powerpc (from .../libgfortran3_4.8.0-7_powerpc.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.7+3_all.deb) ...
+Selecting previously unselected package libice6:powerpc.
+Unpacking libice6:powerpc (from .../libice6_2%3a1.0.8-2_powerpc.deb) ...
+Selecting previously unselected package libjpeg8:powerpc.
+Unpacking libjpeg8:powerpc (from .../libjpeg8_8d-1_powerpc.deb) ...
+Selecting previously unselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.19-2_all.deb) ...
+Selecting previously unselected package libthai0:powerpc.
+Unpacking libthai0:powerpc (from .../libthai0_0.1.19-2_powerpc.deb) ...
+Selecting previously unselected package libxft2:powerpc.
+Unpacking libxft2:powerpc (from .../libxft2_2.3.1-1_powerpc.deb) ...
+Selecting previously unselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_powerpc.deb) ...
+Selecting previously unselected package libpango1.0-0:powerpc.
+Unpacking libpango1.0-0:powerpc (from .../libpango1.0-0_1.30.0-1_powerpc.deb) ...
+Selecting previously unselected package libpaper1:powerpc.
+Unpacking libpaper1:powerpc (from .../libpaper1_1.1.24+nmu2_powerpc.deb) ...
+Selecting previously unselected package libpcrecpp0:powerpc.
+Unpacking libpcrecpp0:powerpc (from .../libpcrecpp0_1%3a8.31-2_powerpc.deb) ...
+Selecting previously unselected package libsm6:powerpc.
+Unpacking libsm6:powerpc (from .../libsm6_2%3a1.2.1-2_powerpc.deb) ...
+Selecting previously unselected package libjbig0:powerpc.
+Unpacking libjbig0:powerpc (from .../libjbig0_2.0-2_powerpc.deb) ...
+Selecting previously unselected package libtiff5:powerpc.
+Unpacking libtiff5:powerpc (from .../libtiff5_4.0.2-6_powerpc.deb) ...
+Selecting previously unselected package libxss1:powerpc.
+Unpacking libxss1:powerpc (from .../libxss1_1%3a1.2.2-1_powerpc.deb) ...
+Selecting previously unselected package libxt6:powerpc.
+Unpacking libxt6:powerpc (from .../libxt6_1%3a1.1.3-1_powerpc.deb) ...
+Selecting previously unselected package libmpc3:powerpc.
+Unpacking libmpc3:powerpc (from .../libmpc3_1.0.1-1_powerpc.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_1%3a5.14-1_powerpc.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_powerpc.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
+Preparing to replace libstdc++6-4.6-dev 4.6.3-15 (using .../libstdc++6-4.6-dev_4.6.4-2_powerpc.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.3-15 (using .../g++-4.6_4.6.4-2_powerpc.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.3-15 (using .../gcc-4.6_4.6.4-2_powerpc.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace cpp-4.6 4.6.3-15 (using .../cpp-4.6_4.6.4-2_powerpc.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace gcc-4.6-base:powerpc 4.6.3-15 (using .../gcc-4.6-base_4.6.4-2_powerpc.deb) ...
+Unpacking replacement gcc-4.6-base:powerpc ...
+Selecting previously unselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_powerpc.deb) ...
+Selecting previously unselected package libasprintf-dev:powerpc.
+Unpacking libasprintf-dev:powerpc (from .../libasprintf-dev_0.18.1.1-10_powerpc.deb) ...
+Selecting previously unselected package libgettextpo-dev:powerpc.
+Unpacking libgettextpo-dev:powerpc (from .../libgettextpo-dev_0.18.1.1-10_powerpc.deb) ...
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-10_powerpc.deb) ...
+Selecting previously unselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously unselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_9.20130516_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.4-2_powerpc.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.3-8_powerpc.deb) ...
+Selecting previously unselected package libblas3.
+Unpacking libblas3 (from .../libblas3_1.2.20110419-5_powerpc.deb) ...
+Selecting previously unselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_powerpc.deb) ...
+Selecting previously unselected package libbz2-dev:powerpc.
+Unpacking libbz2-dev:powerpc (from .../libbz2-dev_1.0.6-4_powerpc.deb) ...
+Selecting previously unselected package libjpeg8-dev:powerpc.
+Unpacking libjpeg8-dev:powerpc (from .../libjpeg8-dev_8d-1_powerpc.deb) ...
+Selecting previously unselected package liblapack3.
+Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_powerpc.deb) ...
+Selecting previously unselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.4.2+dfsg-1_powerpc.deb) ...
+Selecting previously unselected package libtinfo-dev:powerpc.
+Unpacking libtinfo-dev:powerpc (from .../libtinfo-dev_5.9+20130504-1_powerpc.deb) ...
+Selecting previously unselected package libncurses5-dev:powerpc.
+Unpacking libncurses5-dev:powerpc (from .../libncurses5-dev_5.9+20130504-1_powerpc.deb) ...
+Selecting previously unselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_powerpc.deb) ...
+Selecting previously unselected package libpcre3-dev:powerpc.
+Unpacking libpcre3-dev:powerpc (from .../libpcre3-dev_1%3a8.31-2_powerpc.deb) ...
+Selecting previously unselected package zlib1g-dev:powerpc.
+Unpacking zlib1g-dev:powerpc (from .../zlib1g-dev_1%3a1.2.8.dfsg-1_powerpc.deb) ...
+Selecting previously unselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_powerpc.deb) ...
+Selecting previously unselected package libreadline6-dev:powerpc.
+Unpacking libreadline6-dev:powerpc (from .../libreadline6-dev_6.2+dfsg-0.1_powerpc.deb) ...
+Selecting previously unselected package libreadline-dev:powerpc.
+Unpacking libreadline-dev:powerpc (from .../libreadline-dev_6.2+dfsg-0.1_powerpc.deb) ...
+Selecting previously unselected package zip.
+Unpacking zip (from .../archives/zip_3.0-7_powerpc.deb) ...
+Selecting previously unselected package unzip.
+Unpacking unzip (from .../unzip_6.0-9_powerpc.deb) ...
+Selecting previously unselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
+Selecting previously unselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_powerpc.deb) ...
+Selecting previously unselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_powerpc.deb) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_3.0.1-1_powerpc.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_3.0.1-1_all.deb) ...
+Selecting previously unselected package r-bioc-limma.
+Unpacking r-bioc-limma (from .../r-bioc-limma_3.16.3~dfsg-1_powerpc.deb) ...
+Setting up libc-dev-bin (2.17-3) ...
+Setting up libc6-dev:powerpc (2.17-3) ...
+Setting up libpipeline1:powerpc (1.2.3-1) ...
+Setting up groff-base (1.22.2-2) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.3-6) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:powerpc (0.18.1.1-10) ...
+Setting up libmagic1:powerpc (1:5.14-1) ...
+Setting up libpcre3:powerpc (1:8.31-2) ...
+Setting up libxml2:powerpc (2.8.0+dfsg1-7+nmu1) ...
+Setting up libexpat1:powerpc (2.1.0-3) ...
+Setting up libfreetype6:powerpc (2.4.9-1.1) ...
+Setting up ucf (3.0025+nmu3) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:powerpc (2.9.0-7.1) ...
+Setting up libpixman-1-0:powerpc (0.26.0-4) ...
+Setting up libpng12-0:powerpc (1.2.49-4) ...
+Setting up libxau6:powerpc (1:1.0.7-1) ...
+Setting up libxdmcp6:powerpc (1:1.1.1-1) ...
+Setting up libxcb1:powerpc (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:powerpc (2:1.5.0-1) ...
+Setting up libxcb-render0:powerpc (1.8.1-2) ...
+Setting up libxcb-shm0:powerpc (1.8.1-2) ...
+Setting up libxext6:powerpc (2:1.3.1-2) ...
+Setting up libxrender1:powerpc (1:0.9.7-1) ...
+Setting up libcairo2:powerpc (1.12.14-4) ...
+Setting up libffi6:powerpc (3.0.13-4) ...
+Setting up libglib2.0-0:powerpc (2.36.1-2build1) ...
+No schema files found: doing nothing.
+Setting up libcroco3:powerpc (0.6.8-2) ...
+Setting up libdatrie1:powerpc (0.2.6-2) ...
+Setting up libunistring0:powerpc (0.9.3-5) ...
+Setting up libgettextpo0:powerpc (0.18.1.1-10) ...
+Setting up gcc-4.8-base:powerpc (4.8.0-7) ...
+Setting up libgfortran3:powerpc (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6:powerpc (2:1.0.8-2) ...
+Setting up libjpeg8:powerpc (8d-1) ...
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:powerpc (0.1.19-2) ...
+Setting up libxft2:powerpc (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
+Regenerating fonts cache... done.
+Setting up libpango1.0-0:powerpc (1.30.0-1) ...
+Setting up libpaper1:powerpc (1.1.24+nmu2) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpcrecpp0:powerpc (1:8.31-2) ...
+Setting up libsm6:powerpc (2:1.2.1-2) ...
+Setting up libjbig0:powerpc (2.0-2) ...
+Setting up libtiff5:powerpc (4.0.2-6) ...
+Setting up libxss1:powerpc (1:1.2.2-1) ...
+Setting up libxt6:powerpc (1:1.1.3-1) ...
+Setting up libmpc3:powerpc (1.0.1-1) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
+Setting up gcc-4.6-base:powerpc (4.6.4-2) ...
+Setting up cpp-4.6 (4.6.4-2) ...
+Setting up gcc-4.6 (4.6.4-2) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libasprintf-dev:powerpc (0.18.1.1-10) ...
+Setting up libgettextpo-dev:powerpc (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20130516) ...
+Setting up gfortran-4.6 (4.6.4-2) ...
+Setting up gfortran (4:4.6.3-8) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:powerpc (1.0.6-4) ...
+Setting up libjpeg8-dev:powerpc (8d-1) ...
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:powerpc (5.9+20130504-1) ...
+Setting up libncurses5-dev:powerpc (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:powerpc (1:8.31-2) ...
+Setting up zlib1g-dev:powerpc (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:powerpc (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:powerpc (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.1-1) ...
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (3.0.1-1) ...
+Setting up r-bioc-limma (3.16.3~dfsg-1) ...
+Setting up g++-4.6 (4.6.4-2) ...
+Setting up libstdc++6-4.6-dev (4.6.4-2) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 24 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.32-5-powerpc64 powerpc (ppc64)
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.6_4.6.4-2 gcc-4.6_4.6.4-2 libc6-dev_2.17-3 libstdc++6_4.7.2-5 libstdc++6-4.6-dev_4.6.4-2 linux-libc-dev_3.2.41-2
+Package versions: apt_0.9.7.8 base-files_7.1 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.13-3.2 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2 dash_0.5.7-3 debconf_1.5.50 debfoster_2.7-1.2 debhelper_9.20130516 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-1 findutils_4.4.2-5 font [...]
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Fri May 17 13:25:10 2013 UTC using DSA key ID C09FD35A
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-edger_3.2.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-edger in r-bioc-edger-3.2.3~dfsg
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg-1.debian.tar.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: source package r-bioc-edger
+dpkg-buildpackage: source version 3.2.3~dfsg-1
+ dpkg-source --before-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: host architecture powerpc
+ fakeroot debian/rules clean
+test -x debian/rules
+dh_testroot
+dh_clean
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build-arch
+test -x debian/rules
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+ fakeroot debian/rules binary-arch
+test -x debian/rules
+dh_testroot
+dh_prep
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+dh_installdirs -A
+ install -d debian/r-bioc-edger
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-edger/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 3.0.1-1)" >> debian/r-bioc-edger.substvars
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-powerpc-htFlip/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-powerpc-htFlip/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'edgeR' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-powerpc-htFlip/r-bioc-edger-3.2.3~dfsg/src'
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_exact_test_by_deviance.cpp -o R_exact_test_by_deviance.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_loess_by_col.cpp -o R_loess_by_col.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_cr_adjust.cpp -o R_cr_adjust.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_levenberg.cpp -o R_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_maximize_interpolant.cpp -o R_maximize_interpolant.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_one_group.cpp -o R_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c R_simple_good_turing.cpp -o R_simple_good_turing.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c core/adj_coxreid.cpp -o core/adj_coxreid.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c core/glm_levenberg.cpp -o core/glm_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c core/glm_one_group.cpp -o core/glm_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c core/interpolator.cpp -o core/interpolator.o
+gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./core -I. -fpic -O3 -pipe -g -c core/fmm_spline.c -o core/fmm_spline.o
+g++ -shared -o edgeR.so R_exact_test_by_deviance.o R_loess_by_col.o R_cr_adjust.o R_levenberg.o R_maximize_interpolant.o R_one_group.o R_simple_good_turing.o core/adj_coxreid.o core/glm_levenberg.o core/glm_one_group.o core/interpolator.o core/fmm_spline.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-powerpc-htFlip/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-powerpc-htFlip/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-powerpc-htFlip/r-bioc-edger-3.2.3~dfsg/src'
+installing to /build/buildd-r-bioc-edger_3.2.3~dfsg-1-powerpc-htFlip/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs
+** R
+** data
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices
+** installing vignettes
+** testing if installed package can be loaded
+* DONE (edgeR)
+rm -vf /build/buildd-r-bioc-edger_3.2.3~dfsg-1-powerpc-htFlip/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-powerpc-htFlip/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/COPYING \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-powerpc-htFlip/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-edger_3.2.3~dfsg-1-powerpc-htFlip/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-powerpc-htFlip/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides/r-bioc-edger; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-edger.substvars
+dh_installdirs -pr-bioc-edger
+chmod 644 debian/r-bioc-edger/usr/lib/R/site-library/edgeR/doc/*
+dh_installdocs -pr-bioc-edger
+ install -g 0 -o 0 -d debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-edger_3.2.3~dfsg-1-powerpc-htFlip/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/doc/r-bioc-edger \;
+ cp -a debian/README.test debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ chown -R 0:0 debian/r-bioc-edger/usr/share/doc
+ chmod -R go=rX debian/r-bioc-edger/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-edger/usr/share/doc
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-edger/usr/share/doc/r-bioc-edger/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-edger/usr/share/doc/r-bioc-edger/copyright
+dh_installexamples -pr-bioc-edger
+dh_installman -pr-bioc-edger
+dh_installinfo -pr-bioc-edger
+dh_installmenu -pr-bioc-edger
+dh_installcron -pr-bioc-edger
+dh_installinit -pr-bioc-edger
+dh_installdebconf -pr-bioc-edger
+ install -o 0 -g 0 -d debian/r-bioc-edger/DEBIAN
+dh_installemacsen -pr-bioc-edger
+dh_installcatalogs -pr-bioc-edger
+ grep -s -v '^misc:Depends=' debian/r-bioc-edger.substvars > debian/r-bioc-edger.substvars.new || true
+ mv debian/r-bioc-edger.substvars.new debian/r-bioc-edger.substvars
+dh_installpam -pr-bioc-edger
+dh_installlogrotate -pr-bioc-edger
+dh_installlogcheck -pr-bioc-edger
+dh_installchangelogs -pr-bioc-edger
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-edger/usr/share/doc/r-bioc-edger/changelog.Debian
+dh_installudev -pr-bioc-edger
+dh_lintian -pr-bioc-edger
+dh_bugfiles -pr-bioc-edger
+dh_install -pr-bioc-edger
+dh_link -pr-bioc-edger
+dh_installmime -pr-bioc-edger
+dh_installgsettings -pr-bioc-edger
+dh_strip -pr-bioc-edger
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dh_compress -pr-bioc-edger
+ cd debian/r-bioc-edger
+ chmod a-x usr/share/doc/r-bioc-edger/changelog.Debian usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R
+ gzip -9nf usr/share/doc/r-bioc-edger/changelog.Debian usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R
+ cd '/build/buildd-r-bioc-edger_3.2.3~dfsg-1-powerpc-htFlip/r-bioc-edger-3.2.3~dfsg'
+dh_fixperms -pr-bioc-edger
+ find debian/r-bioc-edger -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-edger ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-edger/usr/share/doc -type f ! -regex 'debian/r-bioc-edger/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-edger/usr/share/man debian/r-bioc-edger/usr/man/ debian/r-bioc-edger/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/lib/perl5 debian/r-bioc-edger/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-edger/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
+dh_makeshlibs -pr-bioc-edger
+ rm -f debian/r-bioc-edger/DEBIAN/shlibs
+dh_installdeb -pr-bioc-edger
+dh_perl -pr-bioc-edger
+dh_shlibdeps -pr-bioc-edger
+ dpkg-shlibdeps -Tdebian/r-bioc-edger.substvars debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so was not linked against libgfortran.so.3 (it uses none of the library's symbols)
+dh_gencontrol -pr-bioc-edger
+ echo misc:Depends= >> debian/r-bioc-edger.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-edger.substvars -Pdebian/r-bioc-edger
+ chmod 644 debian/r-bioc-edger/DEBIAN/control
+ chown 0:0 debian/r-bioc-edger/DEBIAN/control
+dh_md5sums -pr-bioc-edger
+ (cd debian/r-bioc-edger >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-edger/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-edger/DEBIAN/md5sums
+dh_builddeb -pr-bioc-edger -- -Z xz
+ dpkg-deb -Z xz --build debian/r-bioc-edger ..
+dpkg-deb: building package `r-bioc-edger' in `../r-bioc-edger_3.2.3~dfsg-1_powerpc.deb'.
+ dpkg-genchanges -B -mpowerpc Build Daemon (porpora) <buildd_powerpc-porpora at buildd.debian.org> >../r-bioc-edger_3.2.3~dfsg-1_powerpc.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20130517-1351
+
+r-bioc-edger_3.2.3~dfsg-1_powerpc.changes:
+Format: 1.8
+Date: Fri, 17 May 2013 14:36:51 +0200
+Source: r-bioc-edger
+Binary: r-bioc-edger
+Architecture: powerpc
+Version: 3.2.3~dfsg-1
+Distribution: sid
+Urgency: low
+Maintainer: powerpc Build Daemon (porpora) <buildd_powerpc-porpora at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
+Description:
+ r-bioc-edger - Empirical analysis of digital gene expression data in R
+Changes:
+ r-bioc-edger (3.2.3~dfsg-1) unstable; urgency=low
+ .
+ [ Charles Plessy ]
+ 74f1a5f Imported Upstream version 2.6.10~dfsg
+ d2d70ab Corrected VCS URLs.
+ 44c9d4e Regression tests for autopkgtest.
+ .
+ [ Andreas Tille ]
+ * Imported new upstream version 3.2.3~dfsg
+ * debian/control
+ - Added myself as Uploader
+ - Add ${shlibs:Depends} to ensure dependency from libc
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - normalised format
+ - Removed unneeded Pre-Depends: dpkg (>= 1.15.6)
+ - Removed versioned dependency of r-base-dev
+ - Package is "Architecture: any" (rather than all)
+ * debian/source/format: Add explicit source format specification
+ * debian/copyright:
+ - Update Source location
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - Add years to Copyright field
+ * debian/upstream: inst/CITATION asks for citing this more recent
+ paper that is now on top of debian/upstream
+ * debian/rules: remove executable flag from installed documentation
+Checksums-Sha1:
+ 9316300d60a742395a82f047933e65f6b07174b2 1363520 r-bioc-edger_3.2.3~dfsg-1_powerpc.deb
+Checksums-Sha256:
+ 6bd45a83e299e6a398888cf544886fb1a0fd369af851d0da7fa34c7415266255 1363520 r-bioc-edger_3.2.3~dfsg-1_powerpc.deb
+Files:
+ b23b2b4fc9df642e5bb906f33b197105 1363520 gnu-r optional r-bioc-edger_3.2.3~dfsg-1_powerpc.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-edger_3.2.3~dfsg-1_powerpc.deb
+─────────────────────────────────────
+
+ new debian package, version 2.0.
+ size 1363520 bytes: control archive= 1868 bytes.
+ 961 bytes, 17 lines control
+ 2932 bytes, 38 lines md5sums
+ Package: r-bioc-edger
+ Version: 3.2.3~dfsg-1
+ Architecture: powerpc
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 2477
+ Depends: r-base-core (>= 3.0.1-1), r-bioc-limma, libblas3 | libblas.so.3 | libatlas3-base, libc6 (>= 2.1.3), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3), liblapack3 | liblapack.so.3 | libatlas3-base, libstdc++6 (>= 4.2.1)
+ Suggests: r-cran-mass
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
+ Description: Empirical analysis of digital gene expression data in R
+ Bioconductor package for differential expression analysis of whole
+ transcriptome sequencing (RNA-seq) and digital gene expression
+ profiles with biological replication. It uses empirical Bayes
+ estimation and exact tests based on the negative binomial
+ distribution. It is also useful for differential signal analysis with
+ other types of genome-scale count data.
+
+drwxr-xr-x root/root 0 2013-05-17 13:50 ./
+drwxr-xr-x root/root 0 2013-05-17 13:50 ./usr/
+drwxr-xr-x root/root 0 2013-05-17 13:50 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-17 13:50 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-17 13:50 ./usr/share/doc/r-bioc-edger/
+-rw-r--r-- root/root 1404 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/copyright
+drwxr-xr-x root/root 0 2013-05-17 13:50 ./usr/share/doc/r-bioc-edger/tests/
+-rw-r--r-- root/root 5706 2013-04-08 00:02 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save.gz
+-rw-r--r-- root/root 1392 2013-04-03 22:17 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R.gz
+-rw-r--r-- root/root 274 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.Debian
+-rw-r--r-- root/root 816 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.test
+-rw-r--r-- root/root 1384 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/changelog.Debian.gz
+drwxr-xr-x root/root 0 2013-05-17 13:50 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-17 13:50 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-17 13:50 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/
+drwxr-xr-x root/root 0 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/libs/
+-rw-r--r-- root/root 43612 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/libs/edgeR.so
+drwxr-xr-x root/root 0 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/html/
+-rw-r--r-- root/root 22781 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/html/00Index.html
+-rw-r--r-- root/root 1179 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/html/R.css
+drwxr-xr-x root/root 0 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/R/
+-rw-r--r-- root/root 2296 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/R/edgeR.rdx
+-rw-r--r-- root/root 1056 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/R/edgeR
+-rw-r--r-- root/root 116074 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/R/edgeR.rdb
+-rw-r--r-- root/root 1114 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/DESCRIPTION
+-rw-r--r-- root/root 6834 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/INDEX
+drwxr-xr-x root/root 0 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/Meta/
+-rw-r--r-- root/root 996 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/Meta/package.rds
+-rw-r--r-- root/root 3639 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/Meta/Rd.rds
+-rw-r--r-- root/root 228 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/Meta/vignette.rds
+-rw-r--r-- root/root 1640 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/Meta/links.rds
+-rw-r--r-- root/root 161 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/Meta/data.rds
+-rw-r--r-- root/root 3475 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/Meta/hsearch.rds
+-rw-r--r-- root/root 368 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/help/
+-rw-r--r-- root/root 3776 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/help/AnIndex
+-rw-r--r-- root/root 1750 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/help/edgeR.rdx
+-rw-r--r-- root/root 791 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/help/paths.rds
+-rw-r--r-- root/root 1342 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/help/aliases.rds
+-rw-r--r-- root/root 230700 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/help/edgeR.rdb
+drwxr-xr-x root/root 0 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/data/
+-rw-r--r-- root/root 228426 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/data/NC2.txt
+-rw-r--r-- root/root 19 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/data/datalist
+-rw-r--r-- root/root 318545 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/data/Tu102.txt
+-rw-r--r-- root/root 263571 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/data/Tu98.txt
+-rw-r--r-- root/root 248500 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/data/NC1.txt
+drwxr-xr-x root/root 0 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/doc/
+-rw-r--r-- root/root 1826 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/doc/edgeR.Rnw
+-rw-r--r-- root/root 49354 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/doc/edgeR.pdf
+-rw-r--r-- root/root 691 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/doc/index.html
+-rw-r--r-- root/root 879697 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/doc/edgeRUsersGuide.pdf
+-rw-r--r-- root/root 13746 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/NEWS.Rd
+-rw-r--r-- root/root 804 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/NAMESPACE
+-rw-r--r-- root/root 2057 2013-05-17 13:50 ./usr/lib/R/site-library/edgeR/CITATION
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-powerpc-sbuild-5de426c9-5537-493b-bf8c-e1656fa74c37/build/buildd-r-bioc-edger_3.2.3~dfsg-1-powerpc-htFlip
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: powerpc
+Build-Space: 6860
+Build-Time: 42
+Distribution: sid
+Install-Time: 203
+Job: r-bioc-edger_3.2.3~dfsg-1
+Package: r-bioc-edger
+Package-Time: 345
+Source-Version: 3.2.3~dfsg-1
+Space: 6860
+Status: successful
+Version: 3.2.3~dfsg-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20130517-1351
+Build needed 00:05:45, 6860k disc space
+Signature with key 'EABF3A35' requested:
diff --git a/s390.log b/s390.log
new file mode 100644
index 0000000..3e9b742
--- /dev/null
+++ b/s390.log
@@ -0,0 +1,2022 @@
+From buildd at zandonai.debian.org Sat May 18 02:24:37 2013
+Return-path: <buildd at zandonai.debian.org>
+Received: from mailly.debian.org ([82.195.75.114])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=mailly.debian.org, EMAIL=hostmaster at mailly.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:DHE_RSA_AES_128_CBC_SHA1:16)
+ (Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
+ id 1UdWp3-0002aU-Bc
+ for logs at buildd.debian.org; Sat, 18 May 2013 02:24:37 +0000
+Received: from zandonai.debian.org ([80.245.147.46])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=zandonai.debian.org,
+ EMAIL=hostmaster at zandonai.debian.org (verified)
+ by mailly.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:256)
+ (Exim 4.80) (envelope-from <buildd at zandonai.debian.org>)
+ id 1UdWp2-0000Ka-Ia; Sat, 18 May 2013 02:24:36 +0000
+Received: from buildd by zandonai.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at zandonai.debian.org>)
+ id 1UdWp2-0007Im-5t; Sat, 18 May 2013 02:24:36 +0000
+Message-Id: <E1UdWp2-0007Im-5t at zandonai.debian.org>
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
+Date: Sat, 18 May 2013 02:24:36 +0000
+From: buildd on zandonai <buildd at zandonai.debian.org>
+To: phil+buildd at philkern.de,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-edger_3.2.3~dfsg-1 on s390
+ (dist=sid)
+Key-Id: B6E651D0
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zandonai.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-edger 3.2.3~dfsg-1 (s390) 18 May 2013 02:23 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-edger
+Version: 3.2.3~dfsg-1
+Source Version: 3.2.3~dfsg-1
+Architecture: s390
+Hit http://ftp.de.debian.org unstable Release.gpg
+Hit http://ftp.de.debian.org unstable Release
+Hit http://ftp.de.debian.org unstable/main Sources
+Hit http://ftp.de.debian.org unstable/contrib Sources
+Hit http://ftp.de.debian.org unstable/non-free Sources
+Hit http://ftp.de.debian.org unstable/main s390 Packages
+Hit http://ftp.de.debian.org unstable/contrib s390 Packages
+Hit http://incoming.debian.org unstable Release.gpg
+Get:1 http://incoming.debian.org buildd-unstable Release.gpg [1571 B]
+Hit http://incoming.debian.org unstable Release
+Get:2 http://incoming.debian.org buildd-unstable Release [109 kB]
+Hit http://incoming.debian.org unstable/main Sources
+Hit http://incoming.debian.org unstable/contrib Sources
+Hit http://incoming.debian.org unstable/non-free Sources
+Hit http://incoming.debian.org unstable/main s390 Packages
+Hit http://incoming.debian.org unstable/contrib s390 Packages
+Get:3 http://incoming.debian.org buildd-unstable/main Sources [94.0 kB]
+Get:4 http://incoming.debian.org buildd-unstable/contrib Sources [14 B]
+Get:5 http://incoming.debian.org buildd-unstable/non-free Sources [1276 B]
+Get:6 http://incoming.debian.org buildd-unstable/main s390 Packages [88.8 kB]
+Get:7 http://incoming.debian.org buildd-unstable/contrib s390 Packages [14 B]
+Fetched 295 kB in 2s (131 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-edger' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/debian-med/r-bioc-edger.git
+Need to get 1218 kB of source archives.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (dsc) [1445 B]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (tar) [1212 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (diff) [4311 B]
+Fetched 1218 kB in 0s (2849 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.6)
+fakeroot: already installed (1.18.4-2)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 38 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 38 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-edger build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev, r-bioc-limma
+Checking for already installed dependencies...
+base-files: already installed (7.1)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2+dfsg-1)
+bsdutils: already installed (1:2.20.1-5.3)
+coreutils: already installed (8.20-3)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1.1)
+findutils: already installed (4.4.2-5)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+libc-bin: already installed (2.13-38)
+login: already installed (1:4.1.5.1-1)
+mount: already installed (2.20.1-5.3)
+ncurses-base: already installed (5.9-10)
+ncurses-bin: already installed (5.9-10)
+perl-base: already installed (5.14.2-21)
+sed: already installed (4.2.1-10)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-5)
+util-linux: already installed (2.20.1-5.3)
+libc6-dev: already installed (2.13-38)
+gcc: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
+debhelper: missing
+Using default version 9.20130516
+cdbs: missing
+r-base-dev: missing
+r-bioc-limma: missing
+Checking for dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev r-bioc-limma
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ bsdmainutils cpp-4.6 file fontconfig fontconfig-config fonts-dejavu-core
+ g++-4.6 gcc-4.6 gcc-4.6-base gcc-4.8-base gettext gettext-base gfortran
+ gfortran-4.6 groff-base html2text intltool-debian libasprintf-dev
+ libasprintf0c2 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6 libc6-dev
+ libcairo2 libcroco3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6
+ libgettextpo-dev libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libmpc3 libncurses5
+ libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev
+ libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libstdc++6-4.6-dev libthai-data
+ libthai0 libtiff5 libtinfo-dev libtinfo5 libunistring0 libx11-6 libx11-data
+ libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
+ libxml2 libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf r-base-core
+ tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g
+ zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make
+ g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ libcloog-ppl0 libppl-c2 libppl7 gettext-doc gfortran-multilib gfortran-doc
+ gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff glibc-doc
+ ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp
+ ttf-arphic-gkai00mp ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base
+ texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
+ texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
+ texlive-latex-extra texinfo texi2html tcl-tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev curl wget lynx-cur autopoint manpages-dev libglib2.0-data
+ shared-mime-info libgpm2 xml-core libmail-sendmail-perl r-recommended
+ r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper file fontconfig fontconfig-config
+ fonts-dejavu-core gcc-4.8-base gettext gettext-base gfortran gfortran-4.6
+ groff-base html2text intltool-debian libasprintf-dev libasprintf0c2
+ libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libffi6 libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0
+ libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3 libmagic1 libmpc3 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 libx11-6
+ libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
+ libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
+ r-base-dev r-bioc-limma tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libc-dev-bin libc6 libc6-dev
+ libncurses5 libstdc++6-4.6-dev libtinfo5 ncurses-bin zlib1g
+12 upgraded, 85 newly installed, 0 to remove and 26 not upgraded.
+Need to get 78.0 MB of archives.
+After this operation, 119 MB of additional disk space will be used.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main libc6-dev s390 2.17-3 [2826 kB]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main libc-dev-bin s390 2.17-3 [232 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main libc6 s390 2.17-3 [4509 kB]
+Get:4 http://ftp.de.debian.org/debian/ unstable/main libtinfo5 s390 5.9+20130504-1 [299 kB]
+Get:5 http://ftp.de.debian.org/debian/ unstable/main libncurses5 s390 5.9+20130504-1 [116 kB]
+Get:6 http://ftp.de.debian.org/debian/ unstable/main ncurses-bin s390 5.9+20130504-1 [365 kB]
+Get:7 http://ftp.de.debian.org/debian/ unstable/main zlib1g s390 1:1.2.8.dfsg-1 [92.8 kB]
+Get:8 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390 1.2.3-1 [41.2 kB]
+Get:9 http://ftp.de.debian.org/debian/ unstable/main groff-base s390 1.22.2-2 [713 kB]
+Get:10 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390 9.0.5 [213 kB]
+Get:11 http://ftp.de.debian.org/debian/ unstable/main man-db s390 2.6.3-6 [884 kB]
+Get:12 http://ftp.de.debian.org/debian/ unstable/main libasprintf0c2 s390 0.18.1.1-10 [27.2 kB]
+Get:13 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390 1:5.14-1 [219 kB]
+Get:14 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390 1:8.31-2 [253 kB]
+Get:15 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390 2.8.0+dfsg1-7+nmu1 [892 kB]
+Get:16 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390 2.1.0-3 [140 kB]
+Get:17 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 s390 2.4.9-1.1 [449 kB]
+Get:18 http://ftp.de.debian.org/debian/ unstable/main ucf all 3.0025+nmu3 [70.8 kB]
+Get:19 http://ftp.de.debian.org/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
+Get:20 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
+Get:21 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:22 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 s390 2.9.0-7.1 [303 kB]
+Get:23 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 s390 0.26.0-4 [395 kB]
+Get:24 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 s390 1.2.49-4 [192 kB]
+Get:25 http://ftp.de.debian.org/debian/ unstable/main libxau6 s390 1:1.0.7-1 [18.6 kB]
+Get:26 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 s390 1:1.1.1-1 [26.6 kB]
+Get:27 http://ftp.de.debian.org/debian/ unstable/main libxcb1 s390 1.8.1-2 [53.4 kB]
+Get:28 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:29 http://ftp.de.debian.org/debian/ unstable/main libx11-6 s390 2:1.5.0-1 [904 kB]
+Get:30 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 s390 1.8.1-2 [19.1 kB]
+Get:31 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 s390 1.8.1-2 [10.4 kB]
+Get:32 http://ftp.de.debian.org/debian/ unstable/main libxext6 s390 2:1.3.1-2 [55.2 kB]
+Get:33 http://ftp.de.debian.org/debian/ unstable/main libxrender1 s390 1:0.9.7-1 [32.1 kB]
+Get:34 http://ftp.de.debian.org/debian/ unstable/main libcairo2 s390 1.12.14-4 [1012 kB]
+Get:35 http://ftp.de.debian.org/debian/ unstable/main libffi6 s390 3.0.13-4 [20.5 kB]
+Get:36 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390 2.36.1-2build1 [1994 kB]
+Get:37 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390 0.6.8-2 [129 kB]
+Get:38 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 s390 0.2.6-2 [30.5 kB]
+Get:39 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390 0.9.3-5 [433 kB]
+Get:40 http://ftp.de.debian.org/debian/ unstable/main libgettextpo0 s390 0.18.1.1-10 [147 kB]
+Get:41 http://ftp.de.debian.org/debian/ unstable/main gcc-4.8-base s390 4.8.0-7 [148 kB]
+Get:42 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 s390 4.8.0-7 [293 kB]
+Get:43 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.7+3 [284 kB]
+Get:44 http://ftp.de.debian.org/debian/ unstable/main libice6 s390 2:1.0.8-2 [63.6 kB]
+Get:45 http://ftp.de.debian.org/debian/ unstable/main libjpeg8 s390 8d-1 [141 kB]
+Get:46 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.19-2 [156 kB]
+Get:47 http://ftp.de.debian.org/debian/ unstable/main libthai0 s390 0.1.19-2 [43.7 kB]
+Get:48 http://ftp.de.debian.org/debian/ unstable/main libxft2 s390 2.3.1-1 [62.8 kB]
+Get:49 http://ftp.de.debian.org/debian/ unstable/main fontconfig s390 2.9.0-7.1 [350 kB]
+Get:50 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 s390 1.30.0-1 [469 kB]
+Get:51 http://ftp.de.debian.org/debian/ unstable/main libpaper1 s390 1.1.24+nmu2 [22.1 kB]
+Get:52 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 s390 1:8.31-2 [129 kB]
+Get:53 http://ftp.de.debian.org/debian/ unstable/main libsm6 s390 2:1.2.1-2 [35.0 kB]
+Get:54 http://ftp.de.debian.org/debian/ unstable/main libjbig0 s390 2.0-2 [33.8 kB]
+Get:55 http://ftp.de.debian.org/debian/ unstable/main libtiff5 s390 4.0.2-6 [249 kB]
+Get:56 http://ftp.de.debian.org/debian/ unstable/main libxss1 s390 1:1.2.2-1 [17.6 kB]
+Get:57 http://ftp.de.debian.org/debian/ unstable/main libxt6 s390 1:1.1.3-1 [210 kB]
+Get:58 http://ftp.de.debian.org/debian/ unstable/main libmpc3 s390 1.0.1-1 [44.9 kB]
+Get:59 http://ftp.de.debian.org/debian/ unstable/main file s390 1:5.14-1 [54.4 kB]
+Get:60 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390 0.18.1.1-10 [152 kB]
+Get:61 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.121 [80.5 kB]
+Get:62 http://ftp.de.debian.org/debian/ unstable/main libstdc++6-4.6-dev s390 4.6.4-2 [1677 kB]
+Get:63 http://ftp.de.debian.org/debian/ unstable/main g++-4.6 s390 4.6.4-2 [5806 kB]
+Get:64 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6 s390 4.6.4-2 [4104 kB]
+Get:65 http://ftp.de.debian.org/debian/ unstable/main cpp-4.6 s390 4.6.4-2 [3775 kB]
+Get:66 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6-base s390 4.6.4-2 [142 kB]
+Get:67 http://ftp.de.debian.org/debian/ unstable/main html2text s390 1.3.2a-15 [101 kB]
+Get:68 http://ftp.de.debian.org/debian/ unstable/main libasprintf-dev s390 0.18.1.1-10 [27.1 kB]
+Get:69 http://ftp.de.debian.org/debian/ unstable/main libgettextpo-dev s390 0.18.1.1-10 [182 kB]
+Get:70 http://ftp.de.debian.org/debian/ unstable/main gettext s390 0.18.1.1-10 [1800 kB]
+Get:71 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:72 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:73 http://ftp.de.debian.org/debian/ unstable/main debhelper all 9.20130516 [708 kB]
+Get:74 http://ftp.de.debian.org/debian/ unstable/main gfortran-4.6 s390 4.6.4-2 [4443 kB]
+Get:75 http://ftp.de.debian.org/debian/ unstable/main gfortran s390 4:4.6.3-8 [1124 B]
+Get:76 http://ftp.de.debian.org/debian/ unstable/main libblas3 s390 1.2.20110419-5 [192 kB]
+Get:77 http://ftp.de.debian.org/debian/ unstable/main libblas-dev s390 1.2.20110419-5 [203 kB]
+Get:78 http://ftp.de.debian.org/debian/ unstable/main libbz2-dev s390 1.0.6-4 [35.9 kB]
+Get:79 http://ftp.de.debian.org/debian/ unstable/main libjpeg8-dev s390 8d-1 [243 kB]
+Get:80 http://ftp.de.debian.org/debian/ unstable/main liblapack3 s390 3.4.2+dfsg-1 [1733 kB]
+Get:81 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev s390 3.4.2+dfsg-1 [2037 kB]
+Get:82 http://ftp.de.debian.org/debian/ unstable/main libtinfo-dev s390 5.9+20130504-1 [116 kB]
+Get:83 http://ftp.de.debian.org/debian/ unstable/main libncurses5-dev s390 5.9+20130504-1 [215 kB]
+Get:84 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils s390 1.1.24+nmu2 [18.5 kB]
+Get:85 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev s390 1:8.31-2 [358 kB]
+Get:86 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390 1:1.2.8.dfsg-1 [217 kB]
+Get:87 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev s390 1.2.49-4 [270 kB]
+Get:88 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev s390 6.2+dfsg-0.1 [186 kB]
+Get:89 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev s390 6.2+dfsg-0.1 [896 B]
+Get:90 http://ftp.de.debian.org/debian/ unstable/main zip s390 3.0-7 [349 kB]
+Get:91 http://ftp.de.debian.org/debian/ unstable/main unzip s390 6.0-9 [197 kB]
+Get:92 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:93 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 s390 8.5.11-2 [1656 kB]
+Get:94 http://ftp.de.debian.org/debian/ unstable/main tk8.5 s390 8.5.11-2 [1203 kB]
+Get:95 http://ftp.de.debian.org/debian/ unstable/main r-base-core s390 3.0.1-1 [21.4 MB]
+Get:96 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 3.0.1-1 [3896 B]
+Get:97 http://ftp.de.debian.org/debian/ unstable/main r-bioc-limma s390 3.16.3~dfsg-1 [1617 kB]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 78.0 MB in 20s (3717 kB/s)
+(Reading database ... 10742 files and directories currently installed.)
+Preparing to replace libc6-dev:s390 2.13-38 (using .../libc6-dev_2.17-3_s390.deb) ...
+Unpacking replacement libc6-dev:s390 ...
+Preparing to replace libc-dev-bin 2.13-38 (using .../libc-dev-bin_2.17-3_s390.deb) ...
+Unpacking replacement libc-dev-bin ...
+Preparing to replace libc6:s390 2.13-38 (using .../archives/libc6_2.17-3_s390.deb) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Unpacking replacement libc6:s390 ...
+Setting up libc6:s390 (2.17-3) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Nothing to restart.
+(Reading database ... 10764 files and directories currently installed.)
+Preparing to replace libtinfo5:s390 5.9-10 (using .../libtinfo5_5.9+20130504-1_s390.deb) ...
+Unpacking replacement libtinfo5:s390 ...
+Setting up libtinfo5:s390 (5.9+20130504-1) ...
+(Reading database ... 10764 files and directories currently installed.)
+Preparing to replace libncurses5:s390 5.9-10 (using .../libncurses5_5.9+20130504-1_s390.deb) ...
+Unpacking replacement libncurses5:s390 ...
+Setting up libncurses5:s390 (5.9+20130504-1) ...
+(Reading database ... 10764 files and directories currently installed.)
+Preparing to replace ncurses-bin 5.9-10 (using .../ncurses-bin_5.9+20130504-1_s390.deb) ...
+Unpacking replacement ncurses-bin ...
+Setting up ncurses-bin (5.9+20130504-1) ...
+(Reading database ... 10762 files and directories currently installed.)
+Preparing to replace zlib1g:s390 1:1.2.7.dfsg-13 (using .../zlib1g_1%3a1.2.8.dfsg-1_s390.deb) ...
+Unpacking replacement zlib1g:s390 ...
+Setting up zlib1g:s390 (1:1.2.8.dfsg-1) ...
+Selecting previously unselected package libpipeline1:s390.
+(Reading database ... 10762 files and directories currently installed.)
+Unpacking libpipeline1:s390 (from .../libpipeline1_1.2.3-1_s390.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.22.2-2_s390.deb) ...
+Selecting previously unselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_s390.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.3-6_s390.deb) ...
+Selecting previously unselected package libasprintf0c2:s390.
+Unpacking libasprintf0c2:s390 (from .../libasprintf0c2_0.18.1.1-10_s390.deb) ...
+Selecting previously unselected package libmagic1:s390.
+Unpacking libmagic1:s390 (from .../libmagic1_1%3a5.14-1_s390.deb) ...
+Selecting previously unselected package libpcre3:s390.
+Unpacking libpcre3:s390 (from .../libpcre3_1%3a8.31-2_s390.deb) ...
+Selecting previously unselected package libxml2:s390.
+Unpacking libxml2:s390 (from .../libxml2_2.8.0+dfsg1-7+nmu1_s390.deb) ...
+Selecting previously unselected package libexpat1:s390.
+Unpacking libexpat1:s390 (from .../libexpat1_2.1.0-3_s390.deb) ...
+Selecting previously unselected package libfreetype6:s390.
+Unpacking libfreetype6:s390 (from .../libfreetype6_2.4.9-1.1_s390.deb) ...
+Selecting previously unselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ...
+Moving old data out of the way
+Selecting previously unselected package fonts-dejavu-core.
+Unpacking fonts-dejavu-core (from .../fonts-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ...
+Selecting previously unselected package libfontconfig1:s390.
+Unpacking libfontconfig1:s390 (from .../libfontconfig1_2.9.0-7.1_s390.deb) ...
+Selecting previously unselected package libpixman-1-0:s390.
+Unpacking libpixman-1-0:s390 (from .../libpixman-1-0_0.26.0-4_s390.deb) ...
+Selecting previously unselected package libpng12-0:s390.
+Unpacking libpng12-0:s390 (from .../libpng12-0_1.2.49-4_s390.deb) ...
+Selecting previously unselected package libxau6:s390.
+Unpacking libxau6:s390 (from .../libxau6_1%3a1.0.7-1_s390.deb) ...
+Selecting previously unselected package libxdmcp6:s390.
+Unpacking libxdmcp6:s390 (from .../libxdmcp6_1%3a1.1.1-1_s390.deb) ...
+Selecting previously unselected package libxcb1:s390.
+Unpacking libxcb1:s390 (from .../libxcb1_1.8.1-2_s390.deb) ...
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ...
+Selecting previously unselected package libx11-6:s390.
+Unpacking libx11-6:s390 (from .../libx11-6_2%3a1.5.0-1_s390.deb) ...
+Selecting previously unselected package libxcb-render0:s390.
+Unpacking libxcb-render0:s390 (from .../libxcb-render0_1.8.1-2_s390.deb) ...
+Selecting previously unselected package libxcb-shm0:s390.
+Unpacking libxcb-shm0:s390 (from .../libxcb-shm0_1.8.1-2_s390.deb) ...
+Selecting previously unselected package libxext6:s390.
+Unpacking libxext6:s390 (from .../libxext6_2%3a1.3.1-2_s390.deb) ...
+Selecting previously unselected package libxrender1:s390.
+Unpacking libxrender1:s390 (from .../libxrender1_1%3a0.9.7-1_s390.deb) ...
+Selecting previously unselected package libcairo2:s390.
+Unpacking libcairo2:s390 (from .../libcairo2_1.12.14-4_s390.deb) ...
+Selecting previously unselected package libffi6:s390.
+Unpacking libffi6:s390 (from .../libffi6_3.0.13-4_s390.deb) ...
+Selecting previously unselected package libglib2.0-0:s390.
+Unpacking libglib2.0-0:s390 (from .../libglib2.0-0_2.36.1-2build1_s390.deb) ...
+Selecting previously unselected package libcroco3:s390.
+Unpacking libcroco3:s390 (from .../libcroco3_0.6.8-2_s390.deb) ...
+Selecting previously unselected package libdatrie1:s390.
+Unpacking libdatrie1:s390 (from .../libdatrie1_0.2.6-2_s390.deb) ...
+Selecting previously unselected package libunistring0:s390.
+Unpacking libunistring0:s390 (from .../libunistring0_0.9.3-5_s390.deb) ...
+Selecting previously unselected package libgettextpo0:s390.
+Unpacking libgettextpo0:s390 (from .../libgettextpo0_0.18.1.1-10_s390.deb) ...
+Selecting previously unselected package gcc-4.8-base:s390.
+Unpacking gcc-4.8-base:s390 (from .../gcc-4.8-base_4.8.0-7_s390.deb) ...
+Selecting previously unselected package libgfortran3:s390.
+Unpacking libgfortran3:s390 (from .../libgfortran3_4.8.0-7_s390.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.7+3_all.deb) ...
+Selecting previously unselected package libice6:s390.
+Unpacking libice6:s390 (from .../libice6_2%3a1.0.8-2_s390.deb) ...
+Selecting previously unselected package libjpeg8:s390.
+Unpacking libjpeg8:s390 (from .../libjpeg8_8d-1_s390.deb) ...
+Selecting previously unselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.19-2_all.deb) ...
+Selecting previously unselected package libthai0:s390.
+Unpacking libthai0:s390 (from .../libthai0_0.1.19-2_s390.deb) ...
+Selecting previously unselected package libxft2:s390.
+Unpacking libxft2:s390 (from .../libxft2_2.3.1-1_s390.deb) ...
+Selecting previously unselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_s390.deb) ...
+Selecting previously unselected package libpango1.0-0:s390.
+Unpacking libpango1.0-0:s390 (from .../libpango1.0-0_1.30.0-1_s390.deb) ...
+Selecting previously unselected package libpaper1:s390.
+Unpacking libpaper1:s390 (from .../libpaper1_1.1.24+nmu2_s390.deb) ...
+Selecting previously unselected package libpcrecpp0:s390.
+Unpacking libpcrecpp0:s390 (from .../libpcrecpp0_1%3a8.31-2_s390.deb) ...
+Selecting previously unselected package libsm6:s390.
+Unpacking libsm6:s390 (from .../libsm6_2%3a1.2.1-2_s390.deb) ...
+Selecting previously unselected package libjbig0:s390.
+Unpacking libjbig0:s390 (from .../libjbig0_2.0-2_s390.deb) ...
+Selecting previously unselected package libtiff5:s390.
+Unpacking libtiff5:s390 (from .../libtiff5_4.0.2-6_s390.deb) ...
+Selecting previously unselected package libxss1:s390.
+Unpacking libxss1:s390 (from .../libxss1_1%3a1.2.2-1_s390.deb) ...
+Selecting previously unselected package libxt6:s390.
+Unpacking libxt6:s390 (from .../libxt6_1%3a1.1.3-1_s390.deb) ...
+Selecting previously unselected package libmpc3:s390.
+Unpacking libmpc3:s390 (from .../libmpc3_1.0.1-1_s390.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_1%3a5.14-1_s390.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_s390.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
+Preparing to replace libstdc++6-4.6-dev 4.6.3-15 (using .../libstdc++6-4.6-dev_4.6.4-2_s390.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.3-15 (using .../g++-4.6_4.6.4-2_s390.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.3-15 (using .../gcc-4.6_4.6.4-2_s390.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace cpp-4.6 4.6.3-15 (using .../cpp-4.6_4.6.4-2_s390.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace gcc-4.6-base:s390 4.6.3-15 (using .../gcc-4.6-base_4.6.4-2_s390.deb) ...
+Unpacking replacement gcc-4.6-base:s390 ...
+Selecting previously unselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_s390.deb) ...
+Selecting previously unselected package libasprintf-dev:s390.
+Unpacking libasprintf-dev:s390 (from .../libasprintf-dev_0.18.1.1-10_s390.deb) ...
+Selecting previously unselected package libgettextpo-dev:s390.
+Unpacking libgettextpo-dev:s390 (from .../libgettextpo-dev_0.18.1.1-10_s390.deb) ...
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-10_s390.deb) ...
+Selecting previously unselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously unselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_9.20130516_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.4-2_s390.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.3-8_s390.deb) ...
+Selecting previously unselected package libblas3.
+Unpacking libblas3 (from .../libblas3_1.2.20110419-5_s390.deb) ...
+Selecting previously unselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_s390.deb) ...
+Selecting previously unselected package libbz2-dev:s390.
+Unpacking libbz2-dev:s390 (from .../libbz2-dev_1.0.6-4_s390.deb) ...
+Selecting previously unselected package libjpeg8-dev:s390.
+Unpacking libjpeg8-dev:s390 (from .../libjpeg8-dev_8d-1_s390.deb) ...
+Selecting previously unselected package liblapack3.
+Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_s390.deb) ...
+Selecting previously unselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.4.2+dfsg-1_s390.deb) ...
+Selecting previously unselected package libtinfo-dev:s390.
+Unpacking libtinfo-dev:s390 (from .../libtinfo-dev_5.9+20130504-1_s390.deb) ...
+Selecting previously unselected package libncurses5-dev:s390.
+Unpacking libncurses5-dev:s390 (from .../libncurses5-dev_5.9+20130504-1_s390.deb) ...
+Selecting previously unselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_s390.deb) ...
+Selecting previously unselected package libpcre3-dev:s390.
+Unpacking libpcre3-dev:s390 (from .../libpcre3-dev_1%3a8.31-2_s390.deb) ...
+Selecting previously unselected package zlib1g-dev:s390.
+Unpacking zlib1g-dev:s390 (from .../zlib1g-dev_1%3a1.2.8.dfsg-1_s390.deb) ...
+Selecting previously unselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_s390.deb) ...
+Selecting previously unselected package libreadline6-dev:s390.
+Unpacking libreadline6-dev:s390 (from .../libreadline6-dev_6.2+dfsg-0.1_s390.deb) ...
+Selecting previously unselected package libreadline-dev:s390.
+Unpacking libreadline-dev:s390 (from .../libreadline-dev_6.2+dfsg-0.1_s390.deb) ...
+Selecting previously unselected package zip.
+Unpacking zip (from .../archives/zip_3.0-7_s390.deb) ...
+Selecting previously unselected package unzip.
+Unpacking unzip (from .../archives/unzip_6.0-9_s390.deb) ...
+Selecting previously unselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
+Selecting previously unselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_s390.deb) ...
+Selecting previously unselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_s390.deb) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_3.0.1-1_s390.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_3.0.1-1_all.deb) ...
+Selecting previously unselected package r-bioc-limma.
+Unpacking r-bioc-limma (from .../r-bioc-limma_3.16.3~dfsg-1_s390.deb) ...
+Setting up libc-dev-bin (2.17-3) ...
+Setting up libc6-dev:s390 (2.17-3) ...
+Setting up libpipeline1:s390 (1.2.3-1) ...
+Setting up groff-base (1.22.2-2) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.3-6) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:s390 (0.18.1.1-10) ...
+Setting up libmagic1:s390 (1:5.14-1) ...
+Setting up libpcre3:s390 (1:8.31-2) ...
+Setting up libxml2:s390 (2.8.0+dfsg1-7+nmu1) ...
+Setting up libexpat1:s390 (2.1.0-3) ...
+Setting up libfreetype6:s390 (2.4.9-1.1) ...
+Setting up ucf (3.0025+nmu3) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:s390 (2.9.0-7.1) ...
+Setting up libpixman-1-0:s390 (0.26.0-4) ...
+Setting up libpng12-0:s390 (1.2.49-4) ...
+Setting up libxau6:s390 (1:1.0.7-1) ...
+Setting up libxdmcp6:s390 (1:1.1.1-1) ...
+Setting up libxcb1:s390 (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:s390 (2:1.5.0-1) ...
+Setting up libxcb-render0:s390 (1.8.1-2) ...
+Setting up libxcb-shm0:s390 (1.8.1-2) ...
+Setting up libxext6:s390 (2:1.3.1-2) ...
+Setting up libxrender1:s390 (1:0.9.7-1) ...
+Setting up libcairo2:s390 (1.12.14-4) ...
+Setting up libffi6:s390 (3.0.13-4) ...
+Setting up libglib2.0-0:s390 (2.36.1-2build1) ...
+No schema files found: doing nothing.
+Setting up libcroco3:s390 (0.6.8-2) ...
+Setting up libdatrie1:s390 (0.2.6-2) ...
+Setting up libunistring0:s390 (0.9.3-5) ...
+Setting up libgettextpo0:s390 (0.18.1.1-10) ...
+Setting up gcc-4.8-base:s390 (4.8.0-7) ...
+Setting up libgfortran3:s390 (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6:s390 (2:1.0.8-2) ...
+Setting up libjpeg8:s390 (8d-1) ...
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:s390 (0.1.19-2) ...
+Setting up libxft2:s390 (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
+Regenerating fonts cache... done.
+Setting up libpango1.0-0:s390 (1.30.0-1) ...
+Setting up libpaper1:s390 (1.1.24+nmu2) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpcrecpp0:s390 (1:8.31-2) ...
+Setting up libsm6:s390 (2:1.2.1-2) ...
+Setting up libjbig0:s390 (2.0-2) ...
+Setting up libtiff5:s390 (4.0.2-6) ...
+Setting up libxss1:s390 (1:1.2.2-1) ...
+Setting up libxt6:s390 (1:1.1.3-1) ...
+Setting up libmpc3:s390 (1.0.1-1) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
+Setting up gcc-4.6-base:s390 (4.6.4-2) ...
+Setting up cpp-4.6 (4.6.4-2) ...
+Setting up gcc-4.6 (4.6.4-2) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libasprintf-dev:s390 (0.18.1.1-10) ...
+Setting up libgettextpo-dev:s390 (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20130516) ...
+Setting up gfortran-4.6 (4.6.4-2) ...
+Setting up gfortran (4:4.6.3-8) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:s390 (1.0.6-4) ...
+Setting up libjpeg8-dev:s390 (8d-1) ...
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:s390 (5.9+20130504-1) ...
+Setting up libncurses5-dev:s390 (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:s390 (1:8.31-2) ...
+Setting up zlib1g-dev:s390 (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:s390 (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:s390 (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.1-1) ...
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (3.0.1-1) ...
+Setting up r-bioc-limma (3.16.3~dfsg-1) ...
+Setting up g++-4.6 (4.6.4-2) ...
+Setting up libstdc++6-4.6-dev (4.6.4-2) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 26 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.32-5-s390x s390 (s390x)
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.6_4.6.4-2 gcc-4.6_4.6.4-2 libc6-dev_2.17-3 libstdc++6_4.7.2-5 libstdc++6-4.6-dev_4.6.4-2 linux-libc-dev_3.2.41-2
+Package versions: apt_0.9.7.8 base-files_7.1 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.20-3 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2 dash_0.5.7-3 debconf_1.5.49 debfoster_2.7-1.2 debhelper_9.20130516 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-1 findutils_4.4.2-5 fontco [...]
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Fri May 17 13:25:10 2013 UTC using DSA key ID C09FD35A
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-edger_3.2.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-edger in r-bioc-edger-3.2.3~dfsg
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg-1.debian.tar.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: source package r-bioc-edger
+dpkg-buildpackage: source version 3.2.3~dfsg-1
+ dpkg-source --before-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: host architecture s390
+ fakeroot debian/rules clean
+test -x debian/rules
+dh_testroot
+dh_clean
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build-arch
+test -x debian/rules
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+ fakeroot debian/rules binary-arch
+test -x debian/rules
+dh_testroot
+dh_prep
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+dh_installdirs -A
+ install -d debian/r-bioc-edger
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-edger/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 3.0.1-1)" >> debian/r-bioc-edger.substvars
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390-Jjvl5D/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390-Jjvl5D/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'edgeR' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390-Jjvl5D/r-bioc-edger-3.2.3~dfsg/src'
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_exact_test_by_deviance.cpp -o R_exact_test_by_deviance.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_loess_by_col.cpp -o R_loess_by_col.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_cr_adjust.cpp -o R_cr_adjust.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_levenberg.cpp -o R_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_maximize_interpolant.cpp -o R_maximize_interpolant.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_one_group.cpp -o R_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_simple_good_turing.cpp -o R_simple_good_turing.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c core/adj_coxreid.cpp -o core/adj_coxreid.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c core/glm_levenberg.cpp -o core/glm_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c core/glm_one_group.cpp -o core/glm_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c core/interpolator.cpp -o core/interpolator.o
+gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c core/fmm_spline.c -o core/fmm_spline.o
+g++ -shared -o edgeR.so R_exact_test_by_deviance.o R_loess_by_col.o R_cr_adjust.o R_levenberg.o R_maximize_interpolant.o R_one_group.o R_simple_good_turing.o core/adj_coxreid.o core/glm_levenberg.o core/glm_one_group.o core/interpolator.o core/fmm_spline.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390-Jjvl5D/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390-Jjvl5D/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390-Jjvl5D/r-bioc-edger-3.2.3~dfsg/src'
+installing to /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390-Jjvl5D/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs
+** R
+** data
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices
+** installing vignettes
+** testing if installed package can be loaded
+* DONE (edgeR)
+rm -vf /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390-Jjvl5D/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390-Jjvl5D/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/COPYING \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390-Jjvl5D/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390-Jjvl5D/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390-Jjvl5D/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides/r-bioc-edger; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-edger.substvars
+dh_installdirs -pr-bioc-edger
+chmod 644 debian/r-bioc-edger/usr/lib/R/site-library/edgeR/doc/*
+dh_installdocs -pr-bioc-edger
+ install -g 0 -o 0 -d debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390-Jjvl5D/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/doc/r-bioc-edger \;
+ cp -a debian/README.test debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ chown -R 0:0 debian/r-bioc-edger/usr/share/doc
+ chmod -R go=rX debian/r-bioc-edger/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-edger/usr/share/doc
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-edger/usr/share/doc/r-bioc-edger/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-edger/usr/share/doc/r-bioc-edger/copyright
+dh_installexamples -pr-bioc-edger
+dh_installman -pr-bioc-edger
+dh_installinfo -pr-bioc-edger
+dh_installmenu -pr-bioc-edger
+dh_installcron -pr-bioc-edger
+dh_installinit -pr-bioc-edger
+dh_installdebconf -pr-bioc-edger
+ install -o 0 -g 0 -d debian/r-bioc-edger/DEBIAN
+dh_installemacsen -pr-bioc-edger
+dh_installcatalogs -pr-bioc-edger
+ grep -s -v '^misc:Depends=' debian/r-bioc-edger.substvars > debian/r-bioc-edger.substvars.new || true
+ mv debian/r-bioc-edger.substvars.new debian/r-bioc-edger.substvars
+dh_installpam -pr-bioc-edger
+dh_installlogrotate -pr-bioc-edger
+dh_installlogcheck -pr-bioc-edger
+dh_installchangelogs -pr-bioc-edger
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-edger/usr/share/doc/r-bioc-edger/changelog.Debian
+dh_installudev -pr-bioc-edger
+dh_lintian -pr-bioc-edger
+dh_bugfiles -pr-bioc-edger
+dh_install -pr-bioc-edger
+dh_link -pr-bioc-edger
+dh_installmime -pr-bioc-edger
+dh_installgsettings -pr-bioc-edger
+dh_strip -pr-bioc-edger
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dh_compress -pr-bioc-edger
+ cd debian/r-bioc-edger
+ chmod a-x usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/changelog.Debian
+ gzip -9nf usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/changelog.Debian
+ cd '/build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390-Jjvl5D/r-bioc-edger-3.2.3~dfsg'
+dh_fixperms -pr-bioc-edger
+ find debian/r-bioc-edger -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-edger ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-edger/usr/share/doc -type f ! -regex 'debian/r-bioc-edger/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-edger/usr/share/man debian/r-bioc-edger/usr/man/ debian/r-bioc-edger/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/lib/perl5 debian/r-bioc-edger/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-edger/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
+dh_makeshlibs -pr-bioc-edger
+ rm -f debian/r-bioc-edger/DEBIAN/shlibs
+dh_installdeb -pr-bioc-edger
+dh_perl -pr-bioc-edger
+dh_shlibdeps -pr-bioc-edger
+ dpkg-shlibdeps -Tdebian/r-bioc-edger.substvars debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so was not linked against libgfortran.so.3 (it uses none of the library's symbols)
+dh_gencontrol -pr-bioc-edger
+ echo misc:Depends= >> debian/r-bioc-edger.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-edger.substvars -Pdebian/r-bioc-edger
+ chmod 644 debian/r-bioc-edger/DEBIAN/control
+ chown 0:0 debian/r-bioc-edger/DEBIAN/control
+dh_md5sums -pr-bioc-edger
+ (cd debian/r-bioc-edger >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-edger/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-edger/DEBIAN/md5sums
+dh_builddeb -pr-bioc-edger -- -Z xz
+ dpkg-deb -Z xz --build debian/r-bioc-edger ..
+dpkg-deb: building package `r-bioc-edger' in `../r-bioc-edger_3.2.3~dfsg-1_s390.deb'.
+ dpkg-genchanges -B -ms390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../r-bioc-edger_3.2.3~dfsg-1_s390.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20130518-0224
+
+r-bioc-edger_3.2.3~dfsg-1_s390.changes:
+Format: 1.8
+Date: Fri, 17 May 2013 14:36:51 +0200
+Source: r-bioc-edger
+Binary: r-bioc-edger
+Architecture: s390
+Version: 3.2.3~dfsg-1
+Distribution: sid
+Urgency: low
+Maintainer: s390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
+Description:
+ r-bioc-edger - Empirical analysis of digital gene expression data in R
+Changes:
+ r-bioc-edger (3.2.3~dfsg-1) unstable; urgency=low
+ .
+ [ Charles Plessy ]
+ 74f1a5f Imported Upstream version 2.6.10~dfsg
+ d2d70ab Corrected VCS URLs.
+ 44c9d4e Regression tests for autopkgtest.
+ .
+ [ Andreas Tille ]
+ * Imported new upstream version 3.2.3~dfsg
+ * debian/control
+ - Added myself as Uploader
+ - Add ${shlibs:Depends} to ensure dependency from libc
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - normalised format
+ - Removed unneeded Pre-Depends: dpkg (>= 1.15.6)
+ - Removed versioned dependency of r-base-dev
+ - Package is "Architecture: any" (rather than all)
+ * debian/source/format: Add explicit source format specification
+ * debian/copyright:
+ - Update Source location
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - Add years to Copyright field
+ * debian/upstream: inst/CITATION asks for citing this more recent
+ paper that is now on top of debian/upstream
+ * debian/rules: remove executable flag from installed documentation
+Checksums-Sha1:
+ 5edbd86e095c0ec4c6923fab5f196920aed1ee8b 1363878 r-bioc-edger_3.2.3~dfsg-1_s390.deb
+Checksums-Sha256:
+ bb119a194a77b7e95f7abd37a542593eae90b7c08d116bc059ee860a5148f4f8 1363878 r-bioc-edger_3.2.3~dfsg-1_s390.deb
+Files:
+ 6e95cd67f694fb57aac68bb97659f12e 1363878 gnu-r optional r-bioc-edger_3.2.3~dfsg-1_s390.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-edger_3.2.3~dfsg-1_s390.deb
+──────────────────────────────────
+
+ new debian package, version 2.0.
+ size 1363878 bytes: control archive= 1861 bytes.
+ 958 bytes, 17 lines control
+ 2932 bytes, 38 lines md5sums
+ Package: r-bioc-edger
+ Version: 3.2.3~dfsg-1
+ Architecture: s390
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 2476
+ Depends: r-base-core (>= 3.0.1-1), r-bioc-limma, libblas3 | libblas.so.3 | libatlas3-base, libc6 (>= 2.1.3), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3), liblapack3 | liblapack.so.3 | libatlas3-base, libstdc++6 (>= 4.2.1)
+ Suggests: r-cran-mass
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
+ Description: Empirical analysis of digital gene expression data in R
+ Bioconductor package for differential expression analysis of whole
+ transcriptome sequencing (RNA-seq) and digital gene expression
+ profiles with biological replication. It uses empirical Bayes
+ estimation and exact tests based on the negative binomial
+ distribution. It is also useful for differential signal analysis with
+ other types of genome-scale count data.
+
+drwxr-xr-x root/root 0 2013-05-18 02:24 ./
+drwxr-xr-x root/root 0 2013-05-18 02:24 ./usr/
+drwxr-xr-x root/root 0 2013-05-18 02:24 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-18 02:24 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-18 02:24 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/
+-rw-r--r-- root/root 6834 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/INDEX
+drwxr-xr-x root/root 0 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/R/
+-rw-r--r-- root/root 1056 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/R/edgeR
+-rw-r--r-- root/root 116077 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/R/edgeR.rdb
+-rw-r--r-- root/root 2299 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/R/edgeR.rdx
+drwxr-xr-x root/root 0 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/html/
+-rw-r--r-- root/root 1179 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/html/R.css
+-rw-r--r-- root/root 22781 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/html/00Index.html
+drwxr-xr-x root/root 0 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/libs/
+-rw-r--r-- root/root 43052 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/libs/edgeR.so
+drwxr-xr-x root/root 0 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/data/
+-rw-r--r-- root/root 263571 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/data/Tu98.txt
+-rw-r--r-- root/root 248500 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/data/NC1.txt
+-rw-r--r-- root/root 228426 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/data/NC2.txt
+-rw-r--r-- root/root 19 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/data/datalist
+-rw-r--r-- root/root 318545 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/data/Tu102.txt
+drwxr-xr-x root/root 0 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/help/
+-rw-r--r-- root/root 230731 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/help/edgeR.rdb
+-rw-r--r-- root/root 806 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/help/paths.rds
+-rw-r--r-- root/root 1342 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/help/aliases.rds
+-rw-r--r-- root/root 1756 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/help/edgeR.rdx
+-rw-r--r-- root/root 3776 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/help/AnIndex
+-rw-r--r-- root/root 804 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/NAMESPACE
+drwxr-xr-x root/root 0 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/doc/
+-rw-r--r-- root/root 49354 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/doc/edgeR.pdf
+-rw-r--r-- root/root 1826 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/doc/edgeR.Rnw
+-rw-r--r-- root/root 691 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/doc/index.html
+-rw-r--r-- root/root 879697 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/doc/edgeRUsersGuide.pdf
+-rw-r--r-- root/root 1107 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/DESCRIPTION
+-rw-r--r-- root/root 13746 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/NEWS.Rd
+drwxr-xr-x root/root 0 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/Meta/
+-rw-r--r-- root/root 368 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/Meta/nsInfo.rds
+-rw-r--r-- root/root 228 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/Meta/vignette.rds
+-rw-r--r-- root/root 3475 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/Meta/hsearch.rds
+-rw-r--r-- root/root 1640 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/Meta/links.rds
+-rw-r--r-- root/root 988 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/Meta/package.rds
+-rw-r--r-- root/root 161 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/Meta/data.rds
+-rw-r--r-- root/root 3639 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/Meta/Rd.rds
+-rw-r--r-- root/root 2057 2013-05-18 02:24 ./usr/lib/R/site-library/edgeR/CITATION
+drwxr-xr-x root/root 0 2013-05-18 02:24 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-18 02:24 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-18 02:24 ./usr/share/doc/r-bioc-edger/
+drwxr-xr-x root/root 0 2013-05-18 02:24 ./usr/share/doc/r-bioc-edger/tests/
+-rw-r--r-- root/root 5706 2013-04-08 00:02 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save.gz
+-rw-r--r-- root/root 1392 2013-04-03 22:17 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R.gz
+-rw-r--r-- root/root 816 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.test
+-rw-r--r-- root/root 274 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.Debian
+-rw-r--r-- root/root 1384 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/changelog.Debian.gz
+-rw-r--r-- root/root 1404 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/copyright
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-s390-sbuild-6d5e7daa-c6fd-45f7-bd73-330b43865c1a/build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390-Jjvl5D
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: s390
+Build-Space: 6860
+Build-Time: 12
+Distribution: sid
+Install-Time: 41
+Job: r-bioc-edger_3.2.3~dfsg-1
+Package: r-bioc-edger
+Package-Time: 64
+Source-Version: 3.2.3~dfsg-1
+Space: 6860
+Status: successful
+Version: 3.2.3~dfsg-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20130518-0224
+Build needed 00:01:04, 6860k disc space
+Signature with key 'B6E651D0' requested:
+From buildd at zandonai.debian.org Fri May 17 18:54:55 2013
+Return-path: <buildd at zandonai.debian.org>
+Received: from mailly.debian.org ([82.195.75.114])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=mailly.debian.org, EMAIL=hostmaster at mailly.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:DHE_RSA_AES_128_CBC_SHA1:16)
+ (Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
+ id 1UdPnr-0000Fu-DS
+ for logs at buildd.debian.org; Fri, 17 May 2013 18:54:55 +0000
+Received: from zandonai.debian.org ([80.245.147.46])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=zandonai.debian.org,
+ EMAIL=hostmaster at zandonai.debian.org (verified)
+ by mailly.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:256)
+ (Exim 4.80) (envelope-from <buildd at zandonai.debian.org>)
+ id 1UdPnq-00058R-L3; Fri, 17 May 2013 18:54:54 +0000
+Received: from buildd by zandonai.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at zandonai.debian.org>)
+ id 1UdPnq-0006jk-8O; Fri, 17 May 2013 18:54:54 +0000
+Message-Id: <E1UdPnq-0006jk-8O at zandonai.debian.org>
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
+Date: Fri, 17 May 2013 18:54:54 +0000
+From: buildd on zandonai <buildd at zandonai.debian.org>
+To: phil+buildd at philkern.de,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-edger_3.2.3~dfsg-1 on s390x
+ (dist=sid)
+Key-Id: 06DAB0BE
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zandonai.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-edger 3.2.3~dfsg-1 (s390x) 17 May 2013 18:53 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-edger
+Version: 3.2.3~dfsg-1
+Source Version: 3.2.3~dfsg-1
+Architecture: s390x
+Get:1 http://ftp.de.debian.org unstable Release.gpg [1571 B]
+Get:2 http://ftp.de.debian.org unstable Release [203 kB]
+Get:3 http://ftp.de.debian.org unstable/main Sources [6727 kB]
+Get:4 http://incoming.debian.org unstable Release.gpg [1571 B]
+Get:5 http://incoming.debian.org buildd-unstable Release.gpg [1571 B]
+Get:6 http://incoming.debian.org unstable Release [203 kB]
+Get:7 http://incoming.debian.org buildd-unstable Release [109 kB]
+Get:8 http://incoming.debian.org unstable/main Sources [6727 kB]
+Get:9 http://ftp.de.debian.org unstable/contrib Sources [53.7 kB]
+Get:10 http://ftp.de.debian.org unstable/non-free Sources [103 kB]
+Get:11 http://ftp.de.debian.org unstable/main s390x Packages [6125 kB]
+Get:12 http://ftp.de.debian.org unstable/contrib s390x Packages [36.6 kB]
+Get:13 http://incoming.debian.org unstable/contrib Sources [53.7 kB]
+Get:14 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:15 http://incoming.debian.org unstable/main s390x Packages [6125 kB]
+Get:16 http://incoming.debian.org unstable/contrib s390x Packages [36.6 kB]
+Get:17 http://incoming.debian.org buildd-unstable/main Sources [98.1 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib Sources [14 B]
+Get:19 http://incoming.debian.org buildd-unstable/non-free Sources [2211 B]
+Get:20 http://incoming.debian.org buildd-unstable/main s390x Packages [64.0 kB]
+Get:21 http://incoming.debian.org buildd-unstable/contrib s390x Packages [14 B]
+Fetched 26.8 MB in 27s (963 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-edger' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/debian-med/r-bioc-edger.git
+Need to get 1218 kB of source archives.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (dsc) [1445 B]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (tar) [1212 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (diff) [4311 B]
+Fetched 1218 kB in 0s (2917 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.6)
+fakeroot: already installed (1.18.4-2)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 39 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 39 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-edger build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev, r-bioc-limma
+Checking for already installed dependencies...
+base-files: already installed (7.1)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2+dfsg-1)
+bsdutils: already installed (1:2.20.1-5.3)
+coreutils: already installed (8.20-3)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1.1)
+findutils: already installed (4.4.2-5)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+libc-bin: already installed (2.13-38)
+login: already installed (1:4.1.5.1-1)
+mount: already installed (2.20.1-5.3)
+ncurses-base: already installed (5.9-10)
+ncurses-bin: already installed (5.9-10)
+perl-base: already installed (5.14.2-21)
+sed: already installed (4.2.1-10)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-5)
+util-linux: already installed (2.20.1-5.3)
+libc6-dev: already installed (2.13-38)
+gcc: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
+debhelper: missing
+Using default version 9.20130516
+cdbs: missing
+r-base-dev: missing
+r-bioc-limma: missing
+Checking for dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev r-bioc-limma
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ bsdmainutils cpp-4.6 file fontconfig fontconfig-config fonts-dejavu-core
+ g++-4.6 gcc-4.6 gcc-4.6-base gcc-4.8-base gettext gettext-base gfortran
+ gfortran-4.6 groff-base html2text intltool-debian libasprintf-dev
+ libasprintf0c2 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6 libc6-dev
+ libcairo2 libcroco3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6
+ libgettextpo-dev libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libmpc3 libncurses5
+ libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev
+ libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libstdc++6-4.6-dev libthai-data
+ libthai0 libtiff5 libtinfo-dev libtinfo5 libunistring0 libx11-6 libx11-data
+ libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
+ libxml2 libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf r-base-core
+ tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g
+ zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make
+ g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ libcloog-ppl0 libppl-c2 libppl7 gettext-doc gfortran-multilib gfortran-doc
+ gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff glibc-doc
+ ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp
+ ttf-arphic-gkai00mp ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base
+ texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
+ texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
+ texlive-latex-extra texinfo texi2html tcl-tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev curl wget lynx-cur autopoint manpages-dev libglib2.0-data
+ shared-mime-info libgpm2 xml-core libmail-sendmail-perl r-recommended
+ r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper file fontconfig fontconfig-config
+ fonts-dejavu-core gcc-4.8-base gettext gettext-base gfortran gfortran-4.6
+ groff-base html2text intltool-debian libasprintf-dev libasprintf0c2
+ libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libffi6 libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0
+ libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3 libmagic1 libmpc3 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 libx11-6
+ libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
+ libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
+ r-base-dev r-bioc-limma tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libc-dev-bin libc6 libc6-dev
+ libncurses5 libstdc++6-4.6-dev libtinfo5 ncurses-bin zlib1g
+12 upgraded, 85 newly installed, 0 to remove and 27 not upgraded.
+Need to get 84.1 MB of archives.
+After this operation, 132 MB of additional disk space will be used.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main libc6-dev s390x 2.17-3 [2955 kB]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-bioc-limma s390x 3.16.3~dfsg-1 [1618 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main libc-dev-bin s390x 2.17-3 [234 kB]
+Get:4 http://ftp.de.debian.org/debian/ unstable/main libc6 s390x 2.17-3 [4602 kB]
+Get:5 http://ftp.de.debian.org/debian/ unstable/main libtinfo5 s390x 5.9+20130504-1 [301 kB]
+Get:6 http://ftp.de.debian.org/debian/ unstable/main libncurses5 s390x 5.9+20130504-1 [121 kB]
+Get:7 http://ftp.de.debian.org/debian/ unstable/main ncurses-bin s390x 5.9+20130504-1 [366 kB]
+Get:8 http://ftp.de.debian.org/debian/ unstable/main zlib1g s390x 1:1.2.8.dfsg-1 [94.1 kB]
+Get:9 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390x 1.2.3-1 [41.6 kB]
+Get:10 http://ftp.de.debian.org/debian/ unstable/main groff-base s390x 1.22.2-2 [738 kB]
+Get:11 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390x 9.0.5 [216 kB]
+Get:12 http://ftp.de.debian.org/debian/ unstable/main man-db s390x 2.6.3-6 [888 kB]
+Get:13 http://ftp.de.debian.org/debian/ unstable/main libasprintf0c2 s390x 0.18.1.1-10 [27.2 kB]
+Get:14 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390x 1:5.14-1 [214 kB]
+Get:15 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390x 1:8.31-2 [259 kB]
+Get:16 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390x 2.8.0+dfsg1-7+nmu1 [902 kB]
+Get:17 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390x 2.1.0-3 [145 kB]
+Get:18 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 s390x 2.4.9-1.1 [465 kB]
+Get:19 http://ftp.de.debian.org/debian/ unstable/main ucf all 3.0025+nmu3 [70.8 kB]
+Get:20 http://ftp.de.debian.org/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
+Get:21 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
+Get:22 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:23 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 s390x 2.9.0-7.1 [302 kB]
+Get:24 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 s390x 0.26.0-4 [368 kB]
+Get:25 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 s390x 1.2.49-4 [193 kB]
+Get:26 http://ftp.de.debian.org/debian/ unstable/main libxau6 s390x 1:1.0.7-1 [18.6 kB]
+Get:27 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 s390x 1:1.1.1-1 [26.5 kB]
+Get:28 http://ftp.de.debian.org/debian/ unstable/main libxcb1 s390x 1.8.1-2 [53.1 kB]
+Get:29 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:30 http://ftp.de.debian.org/debian/ unstable/main libx11-6 s390x 2:1.5.0-1 [917 kB]
+Get:31 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 s390x 1.8.1-2 [19.2 kB]
+Get:32 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 s390x 1.8.1-2 [10.4 kB]
+Get:33 http://ftp.de.debian.org/debian/ unstable/main libxext6 s390x 2:1.3.1-2 [56.8 kB]
+Get:34 http://ftp.de.debian.org/debian/ unstable/main libxrender1 s390x 1:0.9.7-1 [33.6 kB]
+Get:35 http://ftp.de.debian.org/debian/ unstable/main libcairo2 s390x 1.12.14-4 [1008 kB]
+Get:36 http://ftp.de.debian.org/debian/ unstable/main libffi6 s390x 3.0.13-4 [21.6 kB]
+Get:37 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390x 2.36.1-2build1 [2010 kB]
+Get:38 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390x 0.6.8-2 [130 kB]
+Get:39 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 s390x 0.2.6-2 [30.6 kB]
+Get:40 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390x 0.9.3-5+b1 [442 kB]
+Get:41 http://ftp.de.debian.org/debian/ unstable/main libgettextpo0 s390x 0.18.1.1-10 [158 kB]
+Get:42 http://ftp.de.debian.org/debian/ unstable/main gcc-4.8-base s390x 4.8.0-7 [148 kB]
+Get:43 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 s390x 4.8.0-7 [359 kB]
+Get:44 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.7+3 [284 kB]
+Get:45 http://ftp.de.debian.org/debian/ unstable/main libice6 s390x 2:1.0.8-2 [65.6 kB]
+Get:46 http://ftp.de.debian.org/debian/ unstable/main libjpeg8 s390x 8d-1 [190 kB]
+Get:47 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.19-2 [156 kB]
+Get:48 http://ftp.de.debian.org/debian/ unstable/main libthai0 s390x 0.1.19-2 [44.0 kB]
+Get:49 http://ftp.de.debian.org/debian/ unstable/main libxft2 s390x 2.3.1-1 [63.6 kB]
+Get:50 http://ftp.de.debian.org/debian/ unstable/main fontconfig s390x 2.9.0-7.1 [351 kB]
+Get:51 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 s390x 1.30.0-1 [473 kB]
+Get:52 http://ftp.de.debian.org/debian/ unstable/main libpaper1 s390x 1.1.24+nmu2 [22.0 kB]
+Get:53 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 s390x 1:8.31-2 [128 kB]
+Get:54 http://ftp.de.debian.org/debian/ unstable/main libsm6 s390x 2:1.2.1-2 [34.9 kB]
+Get:55 http://ftp.de.debian.org/debian/ unstable/main libjbig0 s390x 2.0-2 [35.7 kB]
+Get:56 http://ftp.de.debian.org/debian/ unstable/main libtiff5 s390x 4.0.2-6 [245 kB]
+Get:57 http://ftp.de.debian.org/debian/ unstable/main libxss1 s390x 1:1.2.2-1 [17.5 kB]
+Get:58 http://ftp.de.debian.org/debian/ unstable/main libxt6 s390x 1:1.1.3-1 [216 kB]
+Get:59 http://ftp.de.debian.org/debian/ unstable/main libmpc3 s390x 1.0.1-1 [45.1 kB]
+Get:60 http://ftp.de.debian.org/debian/ unstable/main file s390x 1:5.14-1 [54.4 kB]
+Get:61 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390x 0.18.1.1-10 [156 kB]
+Get:62 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.121 [80.5 kB]
+Get:63 http://ftp.de.debian.org/debian/ unstable/main libstdc++6-4.6-dev s390x 4.6.4-2 [1704 kB]
+Get:64 http://ftp.de.debian.org/debian/ unstable/main g++-4.6 s390x 4.6.4-2 [5467 kB]
+Get:65 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6 s390x 4.6.4-2 [4278 kB]
+Get:66 http://ftp.de.debian.org/debian/ unstable/main cpp-4.6 s390x 4.6.4-2 [3957 kB]
+Get:67 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6-base s390x 4.6.4-2 [142 kB]
+Get:68 http://ftp.de.debian.org/debian/ unstable/main html2text s390x 1.3.2a-15+b1 [111 kB]
+Get:69 http://ftp.de.debian.org/debian/ unstable/main libasprintf-dev s390x 0.18.1.1-10 [26.8 kB]
+Get:70 http://ftp.de.debian.org/debian/ unstable/main libgettextpo-dev s390x 0.18.1.1-10 [195 kB]
+Get:71 http://ftp.de.debian.org/debian/ unstable/main gettext s390x 0.18.1.1-10 [1864 kB]
+Get:72 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:73 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:74 http://ftp.de.debian.org/debian/ unstable/main debhelper all 9.20130516 [708 kB]
+Get:75 http://ftp.de.debian.org/debian/ unstable/main gfortran-4.6 s390x 4.6.4-2 [4699 kB]
+Get:76 http://ftp.de.debian.org/debian/ unstable/main gfortran s390x 4:4.6.3-8 [1132 B]
+Get:77 http://ftp.de.debian.org/debian/ unstable/main libblas3 s390x 1.2.20110419-5 [218 kB]
+Get:78 http://ftp.de.debian.org/debian/ unstable/main libblas-dev s390x 1.2.20110419-5 [227 kB]
+Get:79 http://ftp.de.debian.org/debian/ unstable/main libbz2-dev s390x 1.0.6-4 [39.1 kB]
+Get:80 http://ftp.de.debian.org/debian/ unstable/main libjpeg8-dev s390x 8d-1 [297 kB]
+Get:81 http://ftp.de.debian.org/debian/ unstable/main liblapack3 s390x 3.4.2+dfsg-1 [4152 kB]
+Get:82 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev s390x 3.4.2+dfsg-1 [4555 kB]
+Get:83 http://ftp.de.debian.org/debian/ unstable/main libtinfo-dev s390x 5.9+20130504-1 [125 kB]
+Get:84 http://ftp.de.debian.org/debian/ unstable/main libncurses5-dev s390x 5.9+20130504-1 [233 kB]
+Get:85 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils s390x 1.1.24+nmu2 [18.5 kB]
+Get:86 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev s390x 1:8.31-2 [365 kB]
+Get:87 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390x 1:1.2.8.dfsg-1 [221 kB]
+Get:88 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev s390x 1.2.49-4 [273 kB]
+Get:89 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev s390x 6.2+dfsg-0.1 [200 kB]
+Get:90 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev s390x 6.2+dfsg-0.1 [898 B]
+Get:91 http://ftp.de.debian.org/debian/ unstable/main zip s390x 3.0-7 [354 kB]
+Get:92 http://ftp.de.debian.org/debian/ unstable/main unzip s390x 6.0-9 [204 kB]
+Get:93 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:94 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 s390x 8.5.11-2 [1657 kB]
+Get:95 http://ftp.de.debian.org/debian/ unstable/main tk8.5 s390x 8.5.11-2 [1229 kB]
+Get:96 http://ftp.de.debian.org/debian/ unstable/main r-base-core s390x 3.0.1-1 [21.6 MB]
+Get:97 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 3.0.1-1 [3896 B]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 84.1 MB in 22s (3796 kB/s)
+(Reading database ... 10877 files and directories currently installed.)
+Preparing to replace libc6-dev:s390x 2.13-38 (using .../libc6-dev_2.17-3_s390x.deb) ...
+Unpacking replacement libc6-dev:s390x ...
+Preparing to replace libc-dev-bin 2.13-38 (using .../libc-dev-bin_2.17-3_s390x.deb) ...
+Unpacking replacement libc-dev-bin ...
+Preparing to replace libc6:s390x 2.13-38 (using .../libc6_2.17-3_s390x.deb) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Unpacking replacement libc6:s390x ...
+Setting up libc6:s390x (2.17-3) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Nothing to restart.
+(Reading database ... 10899 files and directories currently installed.)
+Preparing to replace libtinfo5:s390x 5.9-10 (using .../libtinfo5_5.9+20130504-1_s390x.deb) ...
+Unpacking replacement libtinfo5:s390x ...
+Setting up libtinfo5:s390x (5.9+20130504-1) ...
+(Reading database ... 10899 files and directories currently installed.)
+Preparing to replace libncurses5:s390x 5.9-10 (using .../libncurses5_5.9+20130504-1_s390x.deb) ...
+Unpacking replacement libncurses5:s390x ...
+Setting up libncurses5:s390x (5.9+20130504-1) ...
+(Reading database ... 10899 files and directories currently installed.)
+Preparing to replace ncurses-bin 5.9-10 (using .../ncurses-bin_5.9+20130504-1_s390x.deb) ...
+Unpacking replacement ncurses-bin ...
+Setting up ncurses-bin (5.9+20130504-1) ...
+(Reading database ... 10897 files and directories currently installed.)
+Preparing to replace zlib1g:s390x 1:1.2.7.dfsg-13 (using .../zlib1g_1%3a1.2.8.dfsg-1_s390x.deb) ...
+Unpacking replacement zlib1g:s390x ...
+Setting up zlib1g:s390x (1:1.2.8.dfsg-1) ...
+Selecting previously unselected package libpipeline1:s390x.
+(Reading database ... 10897 files and directories currently installed.)
+Unpacking libpipeline1:s390x (from .../libpipeline1_1.2.3-1_s390x.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.22.2-2_s390x.deb) ...
+Selecting previously unselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_s390x.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.3-6_s390x.deb) ...
+Selecting previously unselected package libasprintf0c2:s390x.
+Unpacking libasprintf0c2:s390x (from .../libasprintf0c2_0.18.1.1-10_s390x.deb) ...
+Selecting previously unselected package libmagic1:s390x.
+Unpacking libmagic1:s390x (from .../libmagic1_1%3a5.14-1_s390x.deb) ...
+Selecting previously unselected package libpcre3:s390x.
+Unpacking libpcre3:s390x (from .../libpcre3_1%3a8.31-2_s390x.deb) ...
+Selecting previously unselected package libxml2:s390x.
+Unpacking libxml2:s390x (from .../libxml2_2.8.0+dfsg1-7+nmu1_s390x.deb) ...
+Selecting previously unselected package libexpat1:s390x.
+Unpacking libexpat1:s390x (from .../libexpat1_2.1.0-3_s390x.deb) ...
+Selecting previously unselected package libfreetype6:s390x.
+Unpacking libfreetype6:s390x (from .../libfreetype6_2.4.9-1.1_s390x.deb) ...
+Selecting previously unselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ...
+Moving old data out of the way
+Selecting previously unselected package fonts-dejavu-core.
+Unpacking fonts-dejavu-core (from .../fonts-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ...
+Selecting previously unselected package libfontconfig1:s390x.
+Unpacking libfontconfig1:s390x (from .../libfontconfig1_2.9.0-7.1_s390x.deb) ...
+Selecting previously unselected package libpixman-1-0:s390x.
+Unpacking libpixman-1-0:s390x (from .../libpixman-1-0_0.26.0-4_s390x.deb) ...
+Selecting previously unselected package libpng12-0:s390x.
+Unpacking libpng12-0:s390x (from .../libpng12-0_1.2.49-4_s390x.deb) ...
+Selecting previously unselected package libxau6:s390x.
+Unpacking libxau6:s390x (from .../libxau6_1%3a1.0.7-1_s390x.deb) ...
+Selecting previously unselected package libxdmcp6:s390x.
+Unpacking libxdmcp6:s390x (from .../libxdmcp6_1%3a1.1.1-1_s390x.deb) ...
+Selecting previously unselected package libxcb1:s390x.
+Unpacking libxcb1:s390x (from .../libxcb1_1.8.1-2_s390x.deb) ...
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ...
+Selecting previously unselected package libx11-6:s390x.
+Unpacking libx11-6:s390x (from .../libx11-6_2%3a1.5.0-1_s390x.deb) ...
+Selecting previously unselected package libxcb-render0:s390x.
+Unpacking libxcb-render0:s390x (from .../libxcb-render0_1.8.1-2_s390x.deb) ...
+Selecting previously unselected package libxcb-shm0:s390x.
+Unpacking libxcb-shm0:s390x (from .../libxcb-shm0_1.8.1-2_s390x.deb) ...
+Selecting previously unselected package libxext6:s390x.
+Unpacking libxext6:s390x (from .../libxext6_2%3a1.3.1-2_s390x.deb) ...
+Selecting previously unselected package libxrender1:s390x.
+Unpacking libxrender1:s390x (from .../libxrender1_1%3a0.9.7-1_s390x.deb) ...
+Selecting previously unselected package libcairo2:s390x.
+Unpacking libcairo2:s390x (from .../libcairo2_1.12.14-4_s390x.deb) ...
+Selecting previously unselected package libffi6:s390x.
+Unpacking libffi6:s390x (from .../libffi6_3.0.13-4_s390x.deb) ...
+Selecting previously unselected package libglib2.0-0:s390x.
+Unpacking libglib2.0-0:s390x (from .../libglib2.0-0_2.36.1-2build1_s390x.deb) ...
+Selecting previously unselected package libcroco3:s390x.
+Unpacking libcroco3:s390x (from .../libcroco3_0.6.8-2_s390x.deb) ...
+Selecting previously unselected package libdatrie1:s390x.
+Unpacking libdatrie1:s390x (from .../libdatrie1_0.2.6-2_s390x.deb) ...
+Selecting previously unselected package libunistring0:s390x.
+Unpacking libunistring0:s390x (from .../libunistring0_0.9.3-5+b1_s390x.deb) ...
+Selecting previously unselected package libgettextpo0:s390x.
+Unpacking libgettextpo0:s390x (from .../libgettextpo0_0.18.1.1-10_s390x.deb) ...
+Selecting previously unselected package gcc-4.8-base:s390x.
+Unpacking gcc-4.8-base:s390x (from .../gcc-4.8-base_4.8.0-7_s390x.deb) ...
+Selecting previously unselected package libgfortran3:s390x.
+Unpacking libgfortran3:s390x (from .../libgfortran3_4.8.0-7_s390x.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.7+3_all.deb) ...
+Selecting previously unselected package libice6:s390x.
+Unpacking libice6:s390x (from .../libice6_2%3a1.0.8-2_s390x.deb) ...
+Selecting previously unselected package libjpeg8:s390x.
+Unpacking libjpeg8:s390x (from .../libjpeg8_8d-1_s390x.deb) ...
+Selecting previously unselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.19-2_all.deb) ...
+Selecting previously unselected package libthai0:s390x.
+Unpacking libthai0:s390x (from .../libthai0_0.1.19-2_s390x.deb) ...
+Selecting previously unselected package libxft2:s390x.
+Unpacking libxft2:s390x (from .../libxft2_2.3.1-1_s390x.deb) ...
+Selecting previously unselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_s390x.deb) ...
+Selecting previously unselected package libpango1.0-0:s390x.
+Unpacking libpango1.0-0:s390x (from .../libpango1.0-0_1.30.0-1_s390x.deb) ...
+Selecting previously unselected package libpaper1:s390x.
+Unpacking libpaper1:s390x (from .../libpaper1_1.1.24+nmu2_s390x.deb) ...
+Selecting previously unselected package libpcrecpp0:s390x.
+Unpacking libpcrecpp0:s390x (from .../libpcrecpp0_1%3a8.31-2_s390x.deb) ...
+Selecting previously unselected package libsm6:s390x.
+Unpacking libsm6:s390x (from .../libsm6_2%3a1.2.1-2_s390x.deb) ...
+Selecting previously unselected package libjbig0:s390x.
+Unpacking libjbig0:s390x (from .../libjbig0_2.0-2_s390x.deb) ...
+Selecting previously unselected package libtiff5:s390x.
+Unpacking libtiff5:s390x (from .../libtiff5_4.0.2-6_s390x.deb) ...
+Selecting previously unselected package libxss1:s390x.
+Unpacking libxss1:s390x (from .../libxss1_1%3a1.2.2-1_s390x.deb) ...
+Selecting previously unselected package libxt6:s390x.
+Unpacking libxt6:s390x (from .../libxt6_1%3a1.1.3-1_s390x.deb) ...
+Selecting previously unselected package libmpc3:s390x.
+Unpacking libmpc3:s390x (from .../libmpc3_1.0.1-1_s390x.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_1%3a5.14-1_s390x.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_s390x.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
+Preparing to replace libstdc++6-4.6-dev 4.6.3-15 (using .../libstdc++6-4.6-dev_4.6.4-2_s390x.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.3-15 (using .../g++-4.6_4.6.4-2_s390x.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.3-15 (using .../gcc-4.6_4.6.4-2_s390x.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace cpp-4.6 4.6.3-15 (using .../cpp-4.6_4.6.4-2_s390x.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace gcc-4.6-base:s390x 4.6.3-15 (using .../gcc-4.6-base_4.6.4-2_s390x.deb) ...
+Unpacking replacement gcc-4.6-base:s390x ...
+Selecting previously unselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15+b1_s390x.deb) ...
+Selecting previously unselected package libasprintf-dev:s390x.
+Unpacking libasprintf-dev:s390x (from .../libasprintf-dev_0.18.1.1-10_s390x.deb) ...
+Selecting previously unselected package libgettextpo-dev:s390x.
+Unpacking libgettextpo-dev:s390x (from .../libgettextpo-dev_0.18.1.1-10_s390x.deb) ...
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-10_s390x.deb) ...
+Selecting previously unselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously unselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_9.20130516_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.4-2_s390x.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.3-8_s390x.deb) ...
+Selecting previously unselected package libblas3.
+Unpacking libblas3 (from .../libblas3_1.2.20110419-5_s390x.deb) ...
+Selecting previously unselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_s390x.deb) ...
+Selecting previously unselected package libbz2-dev:s390x.
+Unpacking libbz2-dev:s390x (from .../libbz2-dev_1.0.6-4_s390x.deb) ...
+Selecting previously unselected package libjpeg8-dev:s390x.
+Unpacking libjpeg8-dev:s390x (from .../libjpeg8-dev_8d-1_s390x.deb) ...
+Selecting previously unselected package liblapack3.
+Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_s390x.deb) ...
+Selecting previously unselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.4.2+dfsg-1_s390x.deb) ...
+Selecting previously unselected package libtinfo-dev:s390x.
+Unpacking libtinfo-dev:s390x (from .../libtinfo-dev_5.9+20130504-1_s390x.deb) ...
+Selecting previously unselected package libncurses5-dev:s390x.
+Unpacking libncurses5-dev:s390x (from .../libncurses5-dev_5.9+20130504-1_s390x.deb) ...
+Selecting previously unselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_s390x.deb) ...
+Selecting previously unselected package libpcre3-dev:s390x.
+Unpacking libpcre3-dev:s390x (from .../libpcre3-dev_1%3a8.31-2_s390x.deb) ...
+Selecting previously unselected package zlib1g-dev:s390x.
+Unpacking zlib1g-dev:s390x (from .../zlib1g-dev_1%3a1.2.8.dfsg-1_s390x.deb) ...
+Selecting previously unselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_s390x.deb) ...
+Selecting previously unselected package libreadline6-dev:s390x.
+Unpacking libreadline6-dev:s390x (from .../libreadline6-dev_6.2+dfsg-0.1_s390x.deb) ...
+Selecting previously unselected package libreadline-dev:s390x.
+Unpacking libreadline-dev:s390x (from .../libreadline-dev_6.2+dfsg-0.1_s390x.deb) ...
+Selecting previously unselected package zip.
+Unpacking zip (from .../archives/zip_3.0-7_s390x.deb) ...
+Selecting previously unselected package unzip.
+Unpacking unzip (from .../archives/unzip_6.0-9_s390x.deb) ...
+Selecting previously unselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
+Selecting previously unselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_s390x.deb) ...
+Selecting previously unselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_s390x.deb) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_3.0.1-1_s390x.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_3.0.1-1_all.deb) ...
+Selecting previously unselected package r-bioc-limma.
+Unpacking r-bioc-limma (from .../r-bioc-limma_3.16.3~dfsg-1_s390x.deb) ...
+Setting up libc-dev-bin (2.17-3) ...
+Setting up libc6-dev:s390x (2.17-3) ...
+Setting up libpipeline1:s390x (1.2.3-1) ...
+Setting up groff-base (1.22.2-2) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.3-6) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:s390x (0.18.1.1-10) ...
+Setting up libmagic1:s390x (1:5.14-1) ...
+Setting up libpcre3:s390x (1:8.31-2) ...
+Setting up libxml2:s390x (2.8.0+dfsg1-7+nmu1) ...
+Setting up libexpat1:s390x (2.1.0-3) ...
+Setting up libfreetype6:s390x (2.4.9-1.1) ...
+Setting up ucf (3.0025+nmu3) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:s390x (2.9.0-7.1) ...
+Setting up libpixman-1-0:s390x (0.26.0-4) ...
+Setting up libpng12-0:s390x (1.2.49-4) ...
+Setting up libxau6:s390x (1:1.0.7-1) ...
+Setting up libxdmcp6:s390x (1:1.1.1-1) ...
+Setting up libxcb1:s390x (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:s390x (2:1.5.0-1) ...
+Setting up libxcb-render0:s390x (1.8.1-2) ...
+Setting up libxcb-shm0:s390x (1.8.1-2) ...
+Setting up libxext6:s390x (2:1.3.1-2) ...
+Setting up libxrender1:s390x (1:0.9.7-1) ...
+Setting up libcairo2:s390x (1.12.14-4) ...
+Setting up libffi6:s390x (3.0.13-4) ...
+Setting up libglib2.0-0:s390x (2.36.1-2build1) ...
+No schema files found: doing nothing.
+Setting up libcroco3:s390x (0.6.8-2) ...
+Setting up libdatrie1:s390x (0.2.6-2) ...
+Setting up libunistring0:s390x (0.9.3-5+b1) ...
+Setting up libgettextpo0:s390x (0.18.1.1-10) ...
+Setting up gcc-4.8-base:s390x (4.8.0-7) ...
+Setting up libgfortran3:s390x (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6:s390x (2:1.0.8-2) ...
+Setting up libjpeg8:s390x (8d-1) ...
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:s390x (0.1.19-2) ...
+Setting up libxft2:s390x (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
+Regenerating fonts cache... done.
+Setting up libpango1.0-0:s390x (1.30.0-1) ...
+Setting up libpaper1:s390x (1.1.24+nmu2) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpcrecpp0:s390x (1:8.31-2) ...
+Setting up libsm6:s390x (2:1.2.1-2) ...
+Setting up libjbig0:s390x (2.0-2) ...
+Setting up libtiff5:s390x (4.0.2-6) ...
+Setting up libxss1:s390x (1:1.2.2-1) ...
+Setting up libxt6:s390x (1:1.1.3-1) ...
+Setting up libmpc3:s390x (1.0.1-1) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
+Setting up gcc-4.6-base:s390x (4.6.4-2) ...
+Setting up cpp-4.6 (4.6.4-2) ...
+Setting up gcc-4.6 (4.6.4-2) ...
+Setting up html2text (1.3.2a-15+b1) ...
+Setting up libasprintf-dev:s390x (0.18.1.1-10) ...
+Setting up libgettextpo-dev:s390x (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20130516) ...
+Setting up gfortran-4.6 (4.6.4-2) ...
+Setting up gfortran (4:4.6.3-8) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:s390x (1.0.6-4) ...
+Setting up libjpeg8-dev:s390x (8d-1) ...
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:s390x (5.9+20130504-1) ...
+Setting up libncurses5-dev:s390x (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:s390x (1:8.31-2) ...
+Setting up zlib1g-dev:s390x (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:s390x (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:s390x (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.1-1) ...
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (3.0.1-1) ...
+Setting up r-bioc-limma (3.16.3~dfsg-1) ...
+Setting up g++-4.6 (4.6.4-2) ...
+Setting up libstdc++6-4.6-dev (4.6.4-2) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 27 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.32-5-s390x s390x (s390x)
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.6_4.6.4-2 gcc-4.6_4.6.4-2 libc6-dev_2.17-3 libstdc++6_4.7.2-5 libstdc++6-4.6-dev_4.6.4-2 linux-libc-dev_3.2.41-2
+Package versions: apt_0.9.7.8+b1 base-files_7.1 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.20-3 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2 dash_0.5.7-3 debconf_1.5.49 debconf-i18n_1.5.49 debfoster_2.7-1.2 debhelper_9.20130516 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-1 f [...]
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Fri May 17 13:25:10 2013 UTC using DSA key ID C09FD35A
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-edger_3.2.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-edger in r-bioc-edger-3.2.3~dfsg
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg-1.debian.tar.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: source package r-bioc-edger
+dpkg-buildpackage: source version 3.2.3~dfsg-1
+ dpkg-source --before-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: host architecture s390x
+ fakeroot debian/rules clean
+test -x debian/rules
+dh_testroot
+dh_clean
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build-arch
+test -x debian/rules
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+ fakeroot debian/rules binary-arch
+test -x debian/rules
+dh_testroot
+dh_prep
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+dh_installdirs -A
+ install -d debian/r-bioc-edger
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-edger/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 3.0.1-1)" >> debian/r-bioc-edger.substvars
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'edgeR' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/src'
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_exact_test_by_deviance.cpp -o R_exact_test_by_deviance.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_loess_by_col.cpp -o R_loess_by_col.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_cr_adjust.cpp -o R_cr_adjust.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_levenberg.cpp -o R_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_maximize_interpolant.cpp -o R_maximize_interpolant.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_one_group.cpp -o R_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_simple_good_turing.cpp -o R_simple_good_turing.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c core/adj_coxreid.cpp -o core/adj_coxreid.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c core/glm_levenberg.cpp -o core/glm_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c core/glm_one_group.cpp -o core/glm_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c core/interpolator.cpp -o core/interpolator.o
+gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c core/fmm_spline.c -o core/fmm_spline.o
+g++ -shared -o edgeR.so R_exact_test_by_deviance.o R_loess_by_col.o R_cr_adjust.o R_levenberg.o R_maximize_interpolant.o R_one_group.o R_simple_good_turing.o core/adj_coxreid.o core/glm_levenberg.o core/glm_one_group.o core/interpolator.o core/fmm_spline.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/src'
+installing to /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs
+** R
+** data
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices
+** installing vignettes
+** testing if installed package can be loaded
+* DONE (edgeR)
+rm -vf /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/COPYING \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides/r-bioc-edger; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-edger.substvars
+dh_installdirs -pr-bioc-edger
+chmod 644 debian/r-bioc-edger/usr/lib/R/site-library/edgeR/doc/*
+dh_installdocs -pr-bioc-edger
+ install -g 0 -o 0 -d debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/doc/r-bioc-edger \;
+ cp -a debian/README.test debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ chown -R 0:0 debian/r-bioc-edger/usr/share/doc
+ chmod -R go=rX debian/r-bioc-edger/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-edger/usr/share/doc
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-edger/usr/share/doc/r-bioc-edger/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-edger/usr/share/doc/r-bioc-edger/copyright
+dh_installexamples -pr-bioc-edger
+dh_installman -pr-bioc-edger
+dh_installinfo -pr-bioc-edger
+dh_installmenu -pr-bioc-edger
+dh_installcron -pr-bioc-edger
+dh_installinit -pr-bioc-edger
+dh_installdebconf -pr-bioc-edger
+ install -o 0 -g 0 -d debian/r-bioc-edger/DEBIAN
+dh_installemacsen -pr-bioc-edger
+dh_installcatalogs -pr-bioc-edger
+ grep -s -v '^misc:Depends=' debian/r-bioc-edger.substvars > debian/r-bioc-edger.substvars.new || true
+ mv debian/r-bioc-edger.substvars.new debian/r-bioc-edger.substvars
+dh_installpam -pr-bioc-edger
+dh_installlogrotate -pr-bioc-edger
+dh_installlogcheck -pr-bioc-edger
+dh_installchangelogs -pr-bioc-edger
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-edger/usr/share/doc/r-bioc-edger/changelog.Debian
+dh_installudev -pr-bioc-edger
+dh_lintian -pr-bioc-edger
+dh_bugfiles -pr-bioc-edger
+dh_install -pr-bioc-edger
+dh_link -pr-bioc-edger
+dh_installmime -pr-bioc-edger
+dh_installgsettings -pr-bioc-edger
+dh_strip -pr-bioc-edger
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dh_compress -pr-bioc-edger
+ cd debian/r-bioc-edger
+ chmod a-x usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/changelog.Debian
+ gzip -9nf usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/changelog.Debian
+ cd '/build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg'
+dh_fixperms -pr-bioc-edger
+ find debian/r-bioc-edger -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-edger ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-edger/usr/share/doc -type f ! -regex 'debian/r-bioc-edger/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-edger/usr/share/man debian/r-bioc-edger/usr/man/ debian/r-bioc-edger/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/lib/perl5 debian/r-bioc-edger/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-edger/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
+dh_makeshlibs -pr-bioc-edger
+ rm -f debian/r-bioc-edger/DEBIAN/shlibs
+dh_installdeb -pr-bioc-edger
+dh_perl -pr-bioc-edger
+dh_shlibdeps -pr-bioc-edger
+ dpkg-shlibdeps -Tdebian/r-bioc-edger.substvars debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so was not linked against libgfortran.so.3 (it uses none of the library's symbols)
+dh_gencontrol -pr-bioc-edger
+ echo misc:Depends= >> debian/r-bioc-edger.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-edger.substvars -Pdebian/r-bioc-edger
+ chmod 644 debian/r-bioc-edger/DEBIAN/control
+ chown 0:0 debian/r-bioc-edger/DEBIAN/control
+dh_md5sums -pr-bioc-edger
+ (cd debian/r-bioc-edger >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-edger/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-edger/DEBIAN/md5sums
+dh_builddeb -pr-bioc-edger -- -Z xz
+ dpkg-deb -Z xz --build debian/r-bioc-edger ..
+dpkg-deb: building package `r-bioc-edger' in `../r-bioc-edger_3.2.3~dfsg-1_s390x.deb'.
+ dpkg-genchanges -B -ms390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../r-bioc-edger_3.2.3~dfsg-1_s390x.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20130517-1854
+
+r-bioc-edger_3.2.3~dfsg-1_s390x.changes:
+Format: 1.8
+Date: Fri, 17 May 2013 14:36:51 +0200
+Source: r-bioc-edger
+Binary: r-bioc-edger
+Architecture: s390x
+Version: 3.2.3~dfsg-1
+Distribution: sid
+Urgency: low
+Maintainer: s390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
+Description:
+ r-bioc-edger - Empirical analysis of digital gene expression data in R
+Changes:
+ r-bioc-edger (3.2.3~dfsg-1) unstable; urgency=low
+ .
+ [ Charles Plessy ]
+ 74f1a5f Imported Upstream version 2.6.10~dfsg
+ d2d70ab Corrected VCS URLs.
+ 44c9d4e Regression tests for autopkgtest.
+ .
+ [ Andreas Tille ]
+ * Imported new upstream version 3.2.3~dfsg
+ * debian/control
+ - Added myself as Uploader
+ - Add ${shlibs:Depends} to ensure dependency from libc
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - normalised format
+ - Removed unneeded Pre-Depends: dpkg (>= 1.15.6)
+ - Removed versioned dependency of r-base-dev
+ - Package is "Architecture: any" (rather than all)
+ * debian/source/format: Add explicit source format specification
+ * debian/copyright:
+ - Update Source location
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - Add years to Copyright field
+ * debian/upstream: inst/CITATION asks for citing this more recent
+ paper that is now on top of debian/upstream
+ * debian/rules: remove executable flag from installed documentation
+Checksums-Sha1:
+ 6a309a74f3c0d26ea19d843df660dcfd31554df2 1365970 r-bioc-edger_3.2.3~dfsg-1_s390x.deb
+Checksums-Sha256:
+ edac6db468ee55b834fb799f756f211ae1457c875f239a70fbb473b32e4c3f8c 1365970 r-bioc-edger_3.2.3~dfsg-1_s390x.deb
+Files:
+ 841428a3e9d2a125868e311687b07433 1365970 gnu-r optional r-bioc-edger_3.2.3~dfsg-1_s390x.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-edger_3.2.3~dfsg-1_s390x.deb
+───────────────────────────────────
+
+ new debian package, version 2.0.
+ size 1365970 bytes: control archive= 1861 bytes.
+ 957 bytes, 17 lines control
+ 2932 bytes, 38 lines md5sums
+ Package: r-bioc-edger
+ Version: 3.2.3~dfsg-1
+ Architecture: s390x
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 2482
+ Depends: r-base-core (>= 3.0.1-1), r-bioc-limma, libblas3 | libblas.so.3 | libatlas3-base, libc6 (>= 2.2), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3), liblapack3 | liblapack.so.3 | libatlas3-base, libstdc++6 (>= 4.2.1)
+ Suggests: r-cran-mass
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
+ Description: Empirical analysis of digital gene expression data in R
+ Bioconductor package for differential expression analysis of whole
+ transcriptome sequencing (RNA-seq) and digital gene expression
+ profiles with biological replication. It uses empirical Bayes
+ estimation and exact tests based on the negative binomial
+ distribution. It is also useful for differential signal analysis with
+ other types of genome-scale count data.
+
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/
+-rw-r--r-- root/root 6834 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/INDEX
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/R/
+-rw-r--r-- root/root 1056 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/R/edgeR
+-rw-r--r-- root/root 116079 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/R/edgeR.rdb
+-rw-r--r-- root/root 2296 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/R/edgeR.rdx
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/html/
+-rw-r--r-- root/root 1179 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/html/R.css
+-rw-r--r-- root/root 22781 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/html/00Index.html
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/libs/
+-rw-r--r-- root/root 48800 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/libs/edgeR.so
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/data/
+-rw-r--r-- root/root 263571 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/data/Tu98.txt
+-rw-r--r-- root/root 248500 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/data/NC1.txt
+-rw-r--r-- root/root 228426 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/data/NC2.txt
+-rw-r--r-- root/root 19 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/data/datalist
+-rw-r--r-- root/root 318545 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/data/Tu102.txt
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/help/
+-rw-r--r-- root/root 230919 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/help/edgeR.rdb
+-rw-r--r-- root/root 806 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/help/paths.rds
+-rw-r--r-- root/root 1342 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/help/aliases.rds
+-rw-r--r-- root/root 1764 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/help/edgeR.rdx
+-rw-r--r-- root/root 3776 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/help/AnIndex
+-rw-r--r-- root/root 804 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/NAMESPACE
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/doc/
+-rw-r--r-- root/root 49354 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/doc/edgeR.pdf
+-rw-r--r-- root/root 1826 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/doc/edgeR.Rnw
+-rw-r--r-- root/root 691 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/doc/index.html
+-rw-r--r-- root/root 879697 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/doc/edgeRUsersGuide.pdf
+-rw-r--r-- root/root 1108 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/DESCRIPTION
+-rw-r--r-- root/root 13746 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/NEWS.Rd
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/Meta/
+-rw-r--r-- root/root 368 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/Meta/nsInfo.rds
+-rw-r--r-- root/root 228 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/Meta/vignette.rds
+-rw-r--r-- root/root 3475 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/Meta/hsearch.rds
+-rw-r--r-- root/root 1640 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/Meta/links.rds
+-rw-r--r-- root/root 992 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/Meta/package.rds
+-rw-r--r-- root/root 161 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/Meta/data.rds
+-rw-r--r-- root/root 3639 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/Meta/Rd.rds
+-rw-r--r-- root/root 2057 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/CITATION
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/share/doc/r-bioc-edger/
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/share/doc/r-bioc-edger/tests/
+-rw-r--r-- root/root 5706 2013-04-08 00:02 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save.gz
+-rw-r--r-- root/root 1392 2013-04-03 22:17 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R.gz
+-rw-r--r-- root/root 816 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.test
+-rw-r--r-- root/root 274 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.Debian
+-rw-r--r-- root/root 1384 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/changelog.Debian.gz
+-rw-r--r-- root/root 1404 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/copyright
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-s390x-sbuild-817cde7f-c38b-47c8-98b4-73e11b80950a/sid-s390x-sbuild/build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: s390x
+Build-Space: 6868
+Build-Time: 14
+Distribution: sid
+Install-Time: 43
+Job: r-bioc-edger_3.2.3~dfsg-1
+Package: r-bioc-edger
+Package-Time: 94
+Source-Version: 3.2.3~dfsg-1
+Space: 6868
+Status: successful
+Version: 3.2.3~dfsg-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20130517-1854
+Build needed 00:01:34, 6868k disc space
+Signature with key '06DAB0BE' requested:
diff --git a/s390x.log b/s390x.log
new file mode 100644
index 0000000..0fbbb2f
--- /dev/null
+++ b/s390x.log
@@ -0,0 +1,1011 @@
+From buildd at zandonai.debian.org Fri May 17 18:54:55 2013
+Return-path: <buildd at zandonai.debian.org>
+Received: from mailly.debian.org ([82.195.75.114])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=mailly.debian.org, EMAIL=hostmaster at mailly.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:DHE_RSA_AES_128_CBC_SHA1:16)
+ (Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
+ id 1UdPnr-0000Fu-DS
+ for logs at buildd.debian.org; Fri, 17 May 2013 18:54:55 +0000
+Received: from zandonai.debian.org ([80.245.147.46])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=zandonai.debian.org,
+ EMAIL=hostmaster at zandonai.debian.org (verified)
+ by mailly.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:256)
+ (Exim 4.80) (envelope-from <buildd at zandonai.debian.org>)
+ id 1UdPnq-00058R-L3; Fri, 17 May 2013 18:54:54 +0000
+Received: from buildd by zandonai.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at zandonai.debian.org>)
+ id 1UdPnq-0006jk-8O; Fri, 17 May 2013 18:54:54 +0000
+Message-Id: <E1UdPnq-0006jk-8O at zandonai.debian.org>
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
+Date: Fri, 17 May 2013 18:54:54 +0000
+From: buildd on zandonai <buildd at zandonai.debian.org>
+To: phil+buildd at philkern.de,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-edger_3.2.3~dfsg-1 on s390x
+ (dist=sid)
+Key-Id: 06DAB0BE
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zandonai.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-edger 3.2.3~dfsg-1 (s390x) 17 May 2013 18:53 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-edger
+Version: 3.2.3~dfsg-1
+Source Version: 3.2.3~dfsg-1
+Architecture: s390x
+Get:1 http://ftp.de.debian.org unstable Release.gpg [1571 B]
+Get:2 http://ftp.de.debian.org unstable Release [203 kB]
+Get:3 http://ftp.de.debian.org unstable/main Sources [6727 kB]
+Get:4 http://incoming.debian.org unstable Release.gpg [1571 B]
+Get:5 http://incoming.debian.org buildd-unstable Release.gpg [1571 B]
+Get:6 http://incoming.debian.org unstable Release [203 kB]
+Get:7 http://incoming.debian.org buildd-unstable Release [109 kB]
+Get:8 http://incoming.debian.org unstable/main Sources [6727 kB]
+Get:9 http://ftp.de.debian.org unstable/contrib Sources [53.7 kB]
+Get:10 http://ftp.de.debian.org unstable/non-free Sources [103 kB]
+Get:11 http://ftp.de.debian.org unstable/main s390x Packages [6125 kB]
+Get:12 http://ftp.de.debian.org unstable/contrib s390x Packages [36.6 kB]
+Get:13 http://incoming.debian.org unstable/contrib Sources [53.7 kB]
+Get:14 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:15 http://incoming.debian.org unstable/main s390x Packages [6125 kB]
+Get:16 http://incoming.debian.org unstable/contrib s390x Packages [36.6 kB]
+Get:17 http://incoming.debian.org buildd-unstable/main Sources [98.1 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib Sources [14 B]
+Get:19 http://incoming.debian.org buildd-unstable/non-free Sources [2211 B]
+Get:20 http://incoming.debian.org buildd-unstable/main s390x Packages [64.0 kB]
+Get:21 http://incoming.debian.org buildd-unstable/contrib s390x Packages [14 B]
+Fetched 26.8 MB in 27s (963 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-edger' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/debian-med/r-bioc-edger.git
+Need to get 1218 kB of source archives.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (dsc) [1445 B]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (tar) [1212 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (diff) [4311 B]
+Fetched 1218 kB in 0s (2917 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.6)
+fakeroot: already installed (1.18.4-2)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 39 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 39 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-edger build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev, r-bioc-limma
+Checking for already installed dependencies...
+base-files: already installed (7.1)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2+dfsg-1)
+bsdutils: already installed (1:2.20.1-5.3)
+coreutils: already installed (8.20-3)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1.1)
+findutils: already installed (4.4.2-5)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+libc-bin: already installed (2.13-38)
+login: already installed (1:4.1.5.1-1)
+mount: already installed (2.20.1-5.3)
+ncurses-base: already installed (5.9-10)
+ncurses-bin: already installed (5.9-10)
+perl-base: already installed (5.14.2-21)
+sed: already installed (4.2.1-10)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-5)
+util-linux: already installed (2.20.1-5.3)
+libc6-dev: already installed (2.13-38)
+gcc: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
+debhelper: missing
+Using default version 9.20130516
+cdbs: missing
+r-base-dev: missing
+r-bioc-limma: missing
+Checking for dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev r-bioc-limma
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ bsdmainutils cpp-4.6 file fontconfig fontconfig-config fonts-dejavu-core
+ g++-4.6 gcc-4.6 gcc-4.6-base gcc-4.8-base gettext gettext-base gfortran
+ gfortran-4.6 groff-base html2text intltool-debian libasprintf-dev
+ libasprintf0c2 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6 libc6-dev
+ libcairo2 libcroco3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6
+ libgettextpo-dev libgettextpo0 libgfortran3 libglib2.0-0 libice6 libjbig0
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libmpc3 libncurses5
+ libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev
+ libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libstdc++6-4.6-dev libthai-data
+ libthai0 libtiff5 libtinfo-dev libtinfo5 libunistring0 libx11-6 libx11-data
+ libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
+ libxml2 libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf r-base-core
+ tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g
+ zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make
+ g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ libcloog-ppl0 libppl-c2 libppl7 gettext-doc gfortran-multilib gfortran-doc
+ gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff glibc-doc
+ ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp
+ ttf-arphic-gkai00mp ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base
+ texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
+ texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
+ texlive-latex-extra texinfo texi2html tcl-tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev curl wget lynx-cur autopoint manpages-dev libglib2.0-data
+ shared-mime-info libgpm2 xml-core libmail-sendmail-perl r-recommended
+ r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper file fontconfig fontconfig-config
+ fonts-dejavu-core gcc-4.8-base gettext gettext-base gfortran gfortran-4.6
+ groff-base html2text intltool-debian libasprintf-dev libasprintf0c2
+ libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libffi6 libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0
+ libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3 libmagic1 libmpc3 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 libx11-6
+ libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
+ libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
+ r-base-dev r-bioc-limma tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libc-dev-bin libc6 libc6-dev
+ libncurses5 libstdc++6-4.6-dev libtinfo5 ncurses-bin zlib1g
+12 upgraded, 85 newly installed, 0 to remove and 27 not upgraded.
+Need to get 84.1 MB of archives.
+After this operation, 132 MB of additional disk space will be used.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main libc6-dev s390x 2.17-3 [2955 kB]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main r-bioc-limma s390x 3.16.3~dfsg-1 [1618 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main libc-dev-bin s390x 2.17-3 [234 kB]
+Get:4 http://ftp.de.debian.org/debian/ unstable/main libc6 s390x 2.17-3 [4602 kB]
+Get:5 http://ftp.de.debian.org/debian/ unstable/main libtinfo5 s390x 5.9+20130504-1 [301 kB]
+Get:6 http://ftp.de.debian.org/debian/ unstable/main libncurses5 s390x 5.9+20130504-1 [121 kB]
+Get:7 http://ftp.de.debian.org/debian/ unstable/main ncurses-bin s390x 5.9+20130504-1 [366 kB]
+Get:8 http://ftp.de.debian.org/debian/ unstable/main zlib1g s390x 1:1.2.8.dfsg-1 [94.1 kB]
+Get:9 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390x 1.2.3-1 [41.6 kB]
+Get:10 http://ftp.de.debian.org/debian/ unstable/main groff-base s390x 1.22.2-2 [738 kB]
+Get:11 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390x 9.0.5 [216 kB]
+Get:12 http://ftp.de.debian.org/debian/ unstable/main man-db s390x 2.6.3-6 [888 kB]
+Get:13 http://ftp.de.debian.org/debian/ unstable/main libasprintf0c2 s390x 0.18.1.1-10 [27.2 kB]
+Get:14 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390x 1:5.14-1 [214 kB]
+Get:15 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390x 1:8.31-2 [259 kB]
+Get:16 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390x 2.8.0+dfsg1-7+nmu1 [902 kB]
+Get:17 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390x 2.1.0-3 [145 kB]
+Get:18 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 s390x 2.4.9-1.1 [465 kB]
+Get:19 http://ftp.de.debian.org/debian/ unstable/main ucf all 3.0025+nmu3 [70.8 kB]
+Get:20 http://ftp.de.debian.org/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
+Get:21 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
+Get:22 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:23 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 s390x 2.9.0-7.1 [302 kB]
+Get:24 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 s390x 0.26.0-4 [368 kB]
+Get:25 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 s390x 1.2.49-4 [193 kB]
+Get:26 http://ftp.de.debian.org/debian/ unstable/main libxau6 s390x 1:1.0.7-1 [18.6 kB]
+Get:27 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 s390x 1:1.1.1-1 [26.5 kB]
+Get:28 http://ftp.de.debian.org/debian/ unstable/main libxcb1 s390x 1.8.1-2 [53.1 kB]
+Get:29 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:30 http://ftp.de.debian.org/debian/ unstable/main libx11-6 s390x 2:1.5.0-1 [917 kB]
+Get:31 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 s390x 1.8.1-2 [19.2 kB]
+Get:32 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 s390x 1.8.1-2 [10.4 kB]
+Get:33 http://ftp.de.debian.org/debian/ unstable/main libxext6 s390x 2:1.3.1-2 [56.8 kB]
+Get:34 http://ftp.de.debian.org/debian/ unstable/main libxrender1 s390x 1:0.9.7-1 [33.6 kB]
+Get:35 http://ftp.de.debian.org/debian/ unstable/main libcairo2 s390x 1.12.14-4 [1008 kB]
+Get:36 http://ftp.de.debian.org/debian/ unstable/main libffi6 s390x 3.0.13-4 [21.6 kB]
+Get:37 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390x 2.36.1-2build1 [2010 kB]
+Get:38 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390x 0.6.8-2 [130 kB]
+Get:39 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 s390x 0.2.6-2 [30.6 kB]
+Get:40 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390x 0.9.3-5+b1 [442 kB]
+Get:41 http://ftp.de.debian.org/debian/ unstable/main libgettextpo0 s390x 0.18.1.1-10 [158 kB]
+Get:42 http://ftp.de.debian.org/debian/ unstable/main gcc-4.8-base s390x 4.8.0-7 [148 kB]
+Get:43 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 s390x 4.8.0-7 [359 kB]
+Get:44 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.7+3 [284 kB]
+Get:45 http://ftp.de.debian.org/debian/ unstable/main libice6 s390x 2:1.0.8-2 [65.6 kB]
+Get:46 http://ftp.de.debian.org/debian/ unstable/main libjpeg8 s390x 8d-1 [190 kB]
+Get:47 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.19-2 [156 kB]
+Get:48 http://ftp.de.debian.org/debian/ unstable/main libthai0 s390x 0.1.19-2 [44.0 kB]
+Get:49 http://ftp.de.debian.org/debian/ unstable/main libxft2 s390x 2.3.1-1 [63.6 kB]
+Get:50 http://ftp.de.debian.org/debian/ unstable/main fontconfig s390x 2.9.0-7.1 [351 kB]
+Get:51 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 s390x 1.30.0-1 [473 kB]
+Get:52 http://ftp.de.debian.org/debian/ unstable/main libpaper1 s390x 1.1.24+nmu2 [22.0 kB]
+Get:53 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 s390x 1:8.31-2 [128 kB]
+Get:54 http://ftp.de.debian.org/debian/ unstable/main libsm6 s390x 2:1.2.1-2 [34.9 kB]
+Get:55 http://ftp.de.debian.org/debian/ unstable/main libjbig0 s390x 2.0-2 [35.7 kB]
+Get:56 http://ftp.de.debian.org/debian/ unstable/main libtiff5 s390x 4.0.2-6 [245 kB]
+Get:57 http://ftp.de.debian.org/debian/ unstable/main libxss1 s390x 1:1.2.2-1 [17.5 kB]
+Get:58 http://ftp.de.debian.org/debian/ unstable/main libxt6 s390x 1:1.1.3-1 [216 kB]
+Get:59 http://ftp.de.debian.org/debian/ unstable/main libmpc3 s390x 1.0.1-1 [45.1 kB]
+Get:60 http://ftp.de.debian.org/debian/ unstable/main file s390x 1:5.14-1 [54.4 kB]
+Get:61 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390x 0.18.1.1-10 [156 kB]
+Get:62 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.121 [80.5 kB]
+Get:63 http://ftp.de.debian.org/debian/ unstable/main libstdc++6-4.6-dev s390x 4.6.4-2 [1704 kB]
+Get:64 http://ftp.de.debian.org/debian/ unstable/main g++-4.6 s390x 4.6.4-2 [5467 kB]
+Get:65 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6 s390x 4.6.4-2 [4278 kB]
+Get:66 http://ftp.de.debian.org/debian/ unstable/main cpp-4.6 s390x 4.6.4-2 [3957 kB]
+Get:67 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6-base s390x 4.6.4-2 [142 kB]
+Get:68 http://ftp.de.debian.org/debian/ unstable/main html2text s390x 1.3.2a-15+b1 [111 kB]
+Get:69 http://ftp.de.debian.org/debian/ unstable/main libasprintf-dev s390x 0.18.1.1-10 [26.8 kB]
+Get:70 http://ftp.de.debian.org/debian/ unstable/main libgettextpo-dev s390x 0.18.1.1-10 [195 kB]
+Get:71 http://ftp.de.debian.org/debian/ unstable/main gettext s390x 0.18.1.1-10 [1864 kB]
+Get:72 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:73 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:74 http://ftp.de.debian.org/debian/ unstable/main debhelper all 9.20130516 [708 kB]
+Get:75 http://ftp.de.debian.org/debian/ unstable/main gfortran-4.6 s390x 4.6.4-2 [4699 kB]
+Get:76 http://ftp.de.debian.org/debian/ unstable/main gfortran s390x 4:4.6.3-8 [1132 B]
+Get:77 http://ftp.de.debian.org/debian/ unstable/main libblas3 s390x 1.2.20110419-5 [218 kB]
+Get:78 http://ftp.de.debian.org/debian/ unstable/main libblas-dev s390x 1.2.20110419-5 [227 kB]
+Get:79 http://ftp.de.debian.org/debian/ unstable/main libbz2-dev s390x 1.0.6-4 [39.1 kB]
+Get:80 http://ftp.de.debian.org/debian/ unstable/main libjpeg8-dev s390x 8d-1 [297 kB]
+Get:81 http://ftp.de.debian.org/debian/ unstable/main liblapack3 s390x 3.4.2+dfsg-1 [4152 kB]
+Get:82 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev s390x 3.4.2+dfsg-1 [4555 kB]
+Get:83 http://ftp.de.debian.org/debian/ unstable/main libtinfo-dev s390x 5.9+20130504-1 [125 kB]
+Get:84 http://ftp.de.debian.org/debian/ unstable/main libncurses5-dev s390x 5.9+20130504-1 [233 kB]
+Get:85 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils s390x 1.1.24+nmu2 [18.5 kB]
+Get:86 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev s390x 1:8.31-2 [365 kB]
+Get:87 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390x 1:1.2.8.dfsg-1 [221 kB]
+Get:88 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev s390x 1.2.49-4 [273 kB]
+Get:89 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev s390x 6.2+dfsg-0.1 [200 kB]
+Get:90 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev s390x 6.2+dfsg-0.1 [898 B]
+Get:91 http://ftp.de.debian.org/debian/ unstable/main zip s390x 3.0-7 [354 kB]
+Get:92 http://ftp.de.debian.org/debian/ unstable/main unzip s390x 6.0-9 [204 kB]
+Get:93 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:94 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 s390x 8.5.11-2 [1657 kB]
+Get:95 http://ftp.de.debian.org/debian/ unstable/main tk8.5 s390x 8.5.11-2 [1229 kB]
+Get:96 http://ftp.de.debian.org/debian/ unstable/main r-base-core s390x 3.0.1-1 [21.6 MB]
+Get:97 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 3.0.1-1 [3896 B]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 84.1 MB in 22s (3796 kB/s)
+(Reading database ... 10877 files and directories currently installed.)
+Preparing to replace libc6-dev:s390x 2.13-38 (using .../libc6-dev_2.17-3_s390x.deb) ...
+Unpacking replacement libc6-dev:s390x ...
+Preparing to replace libc-dev-bin 2.13-38 (using .../libc-dev-bin_2.17-3_s390x.deb) ...
+Unpacking replacement libc-dev-bin ...
+Preparing to replace libc6:s390x 2.13-38 (using .../libc6_2.17-3_s390x.deb) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Unpacking replacement libc6:s390x ...
+Setting up libc6:s390x (2.17-3) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Nothing to restart.
+(Reading database ... 10899 files and directories currently installed.)
+Preparing to replace libtinfo5:s390x 5.9-10 (using .../libtinfo5_5.9+20130504-1_s390x.deb) ...
+Unpacking replacement libtinfo5:s390x ...
+Setting up libtinfo5:s390x (5.9+20130504-1) ...
+(Reading database ... 10899 files and directories currently installed.)
+Preparing to replace libncurses5:s390x 5.9-10 (using .../libncurses5_5.9+20130504-1_s390x.deb) ...
+Unpacking replacement libncurses5:s390x ...
+Setting up libncurses5:s390x (5.9+20130504-1) ...
+(Reading database ... 10899 files and directories currently installed.)
+Preparing to replace ncurses-bin 5.9-10 (using .../ncurses-bin_5.9+20130504-1_s390x.deb) ...
+Unpacking replacement ncurses-bin ...
+Setting up ncurses-bin (5.9+20130504-1) ...
+(Reading database ... 10897 files and directories currently installed.)
+Preparing to replace zlib1g:s390x 1:1.2.7.dfsg-13 (using .../zlib1g_1%3a1.2.8.dfsg-1_s390x.deb) ...
+Unpacking replacement zlib1g:s390x ...
+Setting up zlib1g:s390x (1:1.2.8.dfsg-1) ...
+Selecting previously unselected package libpipeline1:s390x.
+(Reading database ... 10897 files and directories currently installed.)
+Unpacking libpipeline1:s390x (from .../libpipeline1_1.2.3-1_s390x.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.22.2-2_s390x.deb) ...
+Selecting previously unselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_s390x.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.3-6_s390x.deb) ...
+Selecting previously unselected package libasprintf0c2:s390x.
+Unpacking libasprintf0c2:s390x (from .../libasprintf0c2_0.18.1.1-10_s390x.deb) ...
+Selecting previously unselected package libmagic1:s390x.
+Unpacking libmagic1:s390x (from .../libmagic1_1%3a5.14-1_s390x.deb) ...
+Selecting previously unselected package libpcre3:s390x.
+Unpacking libpcre3:s390x (from .../libpcre3_1%3a8.31-2_s390x.deb) ...
+Selecting previously unselected package libxml2:s390x.
+Unpacking libxml2:s390x (from .../libxml2_2.8.0+dfsg1-7+nmu1_s390x.deb) ...
+Selecting previously unselected package libexpat1:s390x.
+Unpacking libexpat1:s390x (from .../libexpat1_2.1.0-3_s390x.deb) ...
+Selecting previously unselected package libfreetype6:s390x.
+Unpacking libfreetype6:s390x (from .../libfreetype6_2.4.9-1.1_s390x.deb) ...
+Selecting previously unselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ...
+Moving old data out of the way
+Selecting previously unselected package fonts-dejavu-core.
+Unpacking fonts-dejavu-core (from .../fonts-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ...
+Selecting previously unselected package libfontconfig1:s390x.
+Unpacking libfontconfig1:s390x (from .../libfontconfig1_2.9.0-7.1_s390x.deb) ...
+Selecting previously unselected package libpixman-1-0:s390x.
+Unpacking libpixman-1-0:s390x (from .../libpixman-1-0_0.26.0-4_s390x.deb) ...
+Selecting previously unselected package libpng12-0:s390x.
+Unpacking libpng12-0:s390x (from .../libpng12-0_1.2.49-4_s390x.deb) ...
+Selecting previously unselected package libxau6:s390x.
+Unpacking libxau6:s390x (from .../libxau6_1%3a1.0.7-1_s390x.deb) ...
+Selecting previously unselected package libxdmcp6:s390x.
+Unpacking libxdmcp6:s390x (from .../libxdmcp6_1%3a1.1.1-1_s390x.deb) ...
+Selecting previously unselected package libxcb1:s390x.
+Unpacking libxcb1:s390x (from .../libxcb1_1.8.1-2_s390x.deb) ...
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ...
+Selecting previously unselected package libx11-6:s390x.
+Unpacking libx11-6:s390x (from .../libx11-6_2%3a1.5.0-1_s390x.deb) ...
+Selecting previously unselected package libxcb-render0:s390x.
+Unpacking libxcb-render0:s390x (from .../libxcb-render0_1.8.1-2_s390x.deb) ...
+Selecting previously unselected package libxcb-shm0:s390x.
+Unpacking libxcb-shm0:s390x (from .../libxcb-shm0_1.8.1-2_s390x.deb) ...
+Selecting previously unselected package libxext6:s390x.
+Unpacking libxext6:s390x (from .../libxext6_2%3a1.3.1-2_s390x.deb) ...
+Selecting previously unselected package libxrender1:s390x.
+Unpacking libxrender1:s390x (from .../libxrender1_1%3a0.9.7-1_s390x.deb) ...
+Selecting previously unselected package libcairo2:s390x.
+Unpacking libcairo2:s390x (from .../libcairo2_1.12.14-4_s390x.deb) ...
+Selecting previously unselected package libffi6:s390x.
+Unpacking libffi6:s390x (from .../libffi6_3.0.13-4_s390x.deb) ...
+Selecting previously unselected package libglib2.0-0:s390x.
+Unpacking libglib2.0-0:s390x (from .../libglib2.0-0_2.36.1-2build1_s390x.deb) ...
+Selecting previously unselected package libcroco3:s390x.
+Unpacking libcroco3:s390x (from .../libcroco3_0.6.8-2_s390x.deb) ...
+Selecting previously unselected package libdatrie1:s390x.
+Unpacking libdatrie1:s390x (from .../libdatrie1_0.2.6-2_s390x.deb) ...
+Selecting previously unselected package libunistring0:s390x.
+Unpacking libunistring0:s390x (from .../libunistring0_0.9.3-5+b1_s390x.deb) ...
+Selecting previously unselected package libgettextpo0:s390x.
+Unpacking libgettextpo0:s390x (from .../libgettextpo0_0.18.1.1-10_s390x.deb) ...
+Selecting previously unselected package gcc-4.8-base:s390x.
+Unpacking gcc-4.8-base:s390x (from .../gcc-4.8-base_4.8.0-7_s390x.deb) ...
+Selecting previously unselected package libgfortran3:s390x.
+Unpacking libgfortran3:s390x (from .../libgfortran3_4.8.0-7_s390x.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.7+3_all.deb) ...
+Selecting previously unselected package libice6:s390x.
+Unpacking libice6:s390x (from .../libice6_2%3a1.0.8-2_s390x.deb) ...
+Selecting previously unselected package libjpeg8:s390x.
+Unpacking libjpeg8:s390x (from .../libjpeg8_8d-1_s390x.deb) ...
+Selecting previously unselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.19-2_all.deb) ...
+Selecting previously unselected package libthai0:s390x.
+Unpacking libthai0:s390x (from .../libthai0_0.1.19-2_s390x.deb) ...
+Selecting previously unselected package libxft2:s390x.
+Unpacking libxft2:s390x (from .../libxft2_2.3.1-1_s390x.deb) ...
+Selecting previously unselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_s390x.deb) ...
+Selecting previously unselected package libpango1.0-0:s390x.
+Unpacking libpango1.0-0:s390x (from .../libpango1.0-0_1.30.0-1_s390x.deb) ...
+Selecting previously unselected package libpaper1:s390x.
+Unpacking libpaper1:s390x (from .../libpaper1_1.1.24+nmu2_s390x.deb) ...
+Selecting previously unselected package libpcrecpp0:s390x.
+Unpacking libpcrecpp0:s390x (from .../libpcrecpp0_1%3a8.31-2_s390x.deb) ...
+Selecting previously unselected package libsm6:s390x.
+Unpacking libsm6:s390x (from .../libsm6_2%3a1.2.1-2_s390x.deb) ...
+Selecting previously unselected package libjbig0:s390x.
+Unpacking libjbig0:s390x (from .../libjbig0_2.0-2_s390x.deb) ...
+Selecting previously unselected package libtiff5:s390x.
+Unpacking libtiff5:s390x (from .../libtiff5_4.0.2-6_s390x.deb) ...
+Selecting previously unselected package libxss1:s390x.
+Unpacking libxss1:s390x (from .../libxss1_1%3a1.2.2-1_s390x.deb) ...
+Selecting previously unselected package libxt6:s390x.
+Unpacking libxt6:s390x (from .../libxt6_1%3a1.1.3-1_s390x.deb) ...
+Selecting previously unselected package libmpc3:s390x.
+Unpacking libmpc3:s390x (from .../libmpc3_1.0.1-1_s390x.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_1%3a5.14-1_s390x.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_s390x.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
+Preparing to replace libstdc++6-4.6-dev 4.6.3-15 (using .../libstdc++6-4.6-dev_4.6.4-2_s390x.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.3-15 (using .../g++-4.6_4.6.4-2_s390x.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.3-15 (using .../gcc-4.6_4.6.4-2_s390x.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace cpp-4.6 4.6.3-15 (using .../cpp-4.6_4.6.4-2_s390x.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace gcc-4.6-base:s390x 4.6.3-15 (using .../gcc-4.6-base_4.6.4-2_s390x.deb) ...
+Unpacking replacement gcc-4.6-base:s390x ...
+Selecting previously unselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15+b1_s390x.deb) ...
+Selecting previously unselected package libasprintf-dev:s390x.
+Unpacking libasprintf-dev:s390x (from .../libasprintf-dev_0.18.1.1-10_s390x.deb) ...
+Selecting previously unselected package libgettextpo-dev:s390x.
+Unpacking libgettextpo-dev:s390x (from .../libgettextpo-dev_0.18.1.1-10_s390x.deb) ...
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-10_s390x.deb) ...
+Selecting previously unselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously unselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_9.20130516_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.4-2_s390x.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.3-8_s390x.deb) ...
+Selecting previously unselected package libblas3.
+Unpacking libblas3 (from .../libblas3_1.2.20110419-5_s390x.deb) ...
+Selecting previously unselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_s390x.deb) ...
+Selecting previously unselected package libbz2-dev:s390x.
+Unpacking libbz2-dev:s390x (from .../libbz2-dev_1.0.6-4_s390x.deb) ...
+Selecting previously unselected package libjpeg8-dev:s390x.
+Unpacking libjpeg8-dev:s390x (from .../libjpeg8-dev_8d-1_s390x.deb) ...
+Selecting previously unselected package liblapack3.
+Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_s390x.deb) ...
+Selecting previously unselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.4.2+dfsg-1_s390x.deb) ...
+Selecting previously unselected package libtinfo-dev:s390x.
+Unpacking libtinfo-dev:s390x (from .../libtinfo-dev_5.9+20130504-1_s390x.deb) ...
+Selecting previously unselected package libncurses5-dev:s390x.
+Unpacking libncurses5-dev:s390x (from .../libncurses5-dev_5.9+20130504-1_s390x.deb) ...
+Selecting previously unselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_s390x.deb) ...
+Selecting previously unselected package libpcre3-dev:s390x.
+Unpacking libpcre3-dev:s390x (from .../libpcre3-dev_1%3a8.31-2_s390x.deb) ...
+Selecting previously unselected package zlib1g-dev:s390x.
+Unpacking zlib1g-dev:s390x (from .../zlib1g-dev_1%3a1.2.8.dfsg-1_s390x.deb) ...
+Selecting previously unselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_s390x.deb) ...
+Selecting previously unselected package libreadline6-dev:s390x.
+Unpacking libreadline6-dev:s390x (from .../libreadline6-dev_6.2+dfsg-0.1_s390x.deb) ...
+Selecting previously unselected package libreadline-dev:s390x.
+Unpacking libreadline-dev:s390x (from .../libreadline-dev_6.2+dfsg-0.1_s390x.deb) ...
+Selecting previously unselected package zip.
+Unpacking zip (from .../archives/zip_3.0-7_s390x.deb) ...
+Selecting previously unselected package unzip.
+Unpacking unzip (from .../archives/unzip_6.0-9_s390x.deb) ...
+Selecting previously unselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
+Selecting previously unselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_s390x.deb) ...
+Selecting previously unselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_s390x.deb) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_3.0.1-1_s390x.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_3.0.1-1_all.deb) ...
+Selecting previously unselected package r-bioc-limma.
+Unpacking r-bioc-limma (from .../r-bioc-limma_3.16.3~dfsg-1_s390x.deb) ...
+Setting up libc-dev-bin (2.17-3) ...
+Setting up libc6-dev:s390x (2.17-3) ...
+Setting up libpipeline1:s390x (1.2.3-1) ...
+Setting up groff-base (1.22.2-2) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.3-6) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:s390x (0.18.1.1-10) ...
+Setting up libmagic1:s390x (1:5.14-1) ...
+Setting up libpcre3:s390x (1:8.31-2) ...
+Setting up libxml2:s390x (2.8.0+dfsg1-7+nmu1) ...
+Setting up libexpat1:s390x (2.1.0-3) ...
+Setting up libfreetype6:s390x (2.4.9-1.1) ...
+Setting up ucf (3.0025+nmu3) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:s390x (2.9.0-7.1) ...
+Setting up libpixman-1-0:s390x (0.26.0-4) ...
+Setting up libpng12-0:s390x (1.2.49-4) ...
+Setting up libxau6:s390x (1:1.0.7-1) ...
+Setting up libxdmcp6:s390x (1:1.1.1-1) ...
+Setting up libxcb1:s390x (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:s390x (2:1.5.0-1) ...
+Setting up libxcb-render0:s390x (1.8.1-2) ...
+Setting up libxcb-shm0:s390x (1.8.1-2) ...
+Setting up libxext6:s390x (2:1.3.1-2) ...
+Setting up libxrender1:s390x (1:0.9.7-1) ...
+Setting up libcairo2:s390x (1.12.14-4) ...
+Setting up libffi6:s390x (3.0.13-4) ...
+Setting up libglib2.0-0:s390x (2.36.1-2build1) ...
+No schema files found: doing nothing.
+Setting up libcroco3:s390x (0.6.8-2) ...
+Setting up libdatrie1:s390x (0.2.6-2) ...
+Setting up libunistring0:s390x (0.9.3-5+b1) ...
+Setting up libgettextpo0:s390x (0.18.1.1-10) ...
+Setting up gcc-4.8-base:s390x (4.8.0-7) ...
+Setting up libgfortran3:s390x (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6:s390x (2:1.0.8-2) ...
+Setting up libjpeg8:s390x (8d-1) ...
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:s390x (0.1.19-2) ...
+Setting up libxft2:s390x (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
+Regenerating fonts cache... done.
+Setting up libpango1.0-0:s390x (1.30.0-1) ...
+Setting up libpaper1:s390x (1.1.24+nmu2) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpcrecpp0:s390x (1:8.31-2) ...
+Setting up libsm6:s390x (2:1.2.1-2) ...
+Setting up libjbig0:s390x (2.0-2) ...
+Setting up libtiff5:s390x (4.0.2-6) ...
+Setting up libxss1:s390x (1:1.2.2-1) ...
+Setting up libxt6:s390x (1:1.1.3-1) ...
+Setting up libmpc3:s390x (1.0.1-1) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
+Setting up gcc-4.6-base:s390x (4.6.4-2) ...
+Setting up cpp-4.6 (4.6.4-2) ...
+Setting up gcc-4.6 (4.6.4-2) ...
+Setting up html2text (1.3.2a-15+b1) ...
+Setting up libasprintf-dev:s390x (0.18.1.1-10) ...
+Setting up libgettextpo-dev:s390x (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20130516) ...
+Setting up gfortran-4.6 (4.6.4-2) ...
+Setting up gfortran (4:4.6.3-8) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:s390x (1.0.6-4) ...
+Setting up libjpeg8-dev:s390x (8d-1) ...
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:s390x (5.9+20130504-1) ...
+Setting up libncurses5-dev:s390x (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:s390x (1:8.31-2) ...
+Setting up zlib1g-dev:s390x (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:s390x (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:s390x (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.1-1) ...
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (3.0.1-1) ...
+Setting up r-bioc-limma (3.16.3~dfsg-1) ...
+Setting up g++-4.6 (4.6.4-2) ...
+Setting up libstdc++6-4.6-dev (4.6.4-2) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 27 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.32-5-s390x s390x (s390x)
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.6_4.6.4-2 gcc-4.6_4.6.4-2 libc6-dev_2.17-3 libstdc++6_4.7.2-5 libstdc++6-4.6-dev_4.6.4-2 linux-libc-dev_3.2.41-2
+Package versions: apt_0.9.7.8+b1 base-files_7.1 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.20-3 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2 dash_0.5.7-3 debconf_1.5.49 debconf-i18n_1.5.49 debfoster_2.7-1.2 debhelper_9.20130516 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-1 f [...]
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Fri May 17 13:25:10 2013 UTC using DSA key ID C09FD35A
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-edger_3.2.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-edger in r-bioc-edger-3.2.3~dfsg
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg-1.debian.tar.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: source package r-bioc-edger
+dpkg-buildpackage: source version 3.2.3~dfsg-1
+ dpkg-source --before-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: host architecture s390x
+ fakeroot debian/rules clean
+test -x debian/rules
+dh_testroot
+dh_clean
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build-arch
+test -x debian/rules
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+ fakeroot debian/rules binary-arch
+test -x debian/rules
+dh_testroot
+dh_prep
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+dh_installdirs -A
+ install -d debian/r-bioc-edger
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-edger/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 3.0.1-1)" >> debian/r-bioc-edger.substvars
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'edgeR' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/src'
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_exact_test_by_deviance.cpp -o R_exact_test_by_deviance.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_loess_by_col.cpp -o R_loess_by_col.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_cr_adjust.cpp -o R_cr_adjust.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_levenberg.cpp -o R_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_maximize_interpolant.cpp -o R_maximize_interpolant.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_one_group.cpp -o R_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_simple_good_turing.cpp -o R_simple_good_turing.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c core/adj_coxreid.cpp -o core/adj_coxreid.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c core/glm_levenberg.cpp -o core/glm_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c core/glm_one_group.cpp -o core/glm_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c core/interpolator.cpp -o core/interpolator.o
+gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c core/fmm_spline.c -o core/fmm_spline.o
+g++ -shared -o edgeR.so R_exact_test_by_deviance.o R_loess_by_col.o R_cr_adjust.o R_levenberg.o R_maximize_interpolant.o R_one_group.o R_simple_good_turing.o core/adj_coxreid.o core/glm_levenberg.o core/glm_one_group.o core/interpolator.o core/fmm_spline.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/src'
+installing to /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs
+** R
+** data
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices
+** installing vignettes
+** testing if installed package can be loaded
+* DONE (edgeR)
+rm -vf /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/COPYING \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides/r-bioc-edger; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-edger.substvars
+dh_installdirs -pr-bioc-edger
+chmod 644 debian/r-bioc-edger/usr/lib/R/site-library/edgeR/doc/*
+dh_installdocs -pr-bioc-edger
+ install -g 0 -o 0 -d debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/doc/r-bioc-edger \;
+ cp -a debian/README.test debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ chown -R 0:0 debian/r-bioc-edger/usr/share/doc
+ chmod -R go=rX debian/r-bioc-edger/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-edger/usr/share/doc
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-edger/usr/share/doc/r-bioc-edger/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-edger/usr/share/doc/r-bioc-edger/copyright
+dh_installexamples -pr-bioc-edger
+dh_installman -pr-bioc-edger
+dh_installinfo -pr-bioc-edger
+dh_installmenu -pr-bioc-edger
+dh_installcron -pr-bioc-edger
+dh_installinit -pr-bioc-edger
+dh_installdebconf -pr-bioc-edger
+ install -o 0 -g 0 -d debian/r-bioc-edger/DEBIAN
+dh_installemacsen -pr-bioc-edger
+dh_installcatalogs -pr-bioc-edger
+ grep -s -v '^misc:Depends=' debian/r-bioc-edger.substvars > debian/r-bioc-edger.substvars.new || true
+ mv debian/r-bioc-edger.substvars.new debian/r-bioc-edger.substvars
+dh_installpam -pr-bioc-edger
+dh_installlogrotate -pr-bioc-edger
+dh_installlogcheck -pr-bioc-edger
+dh_installchangelogs -pr-bioc-edger
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-edger/usr/share/doc/r-bioc-edger/changelog.Debian
+dh_installudev -pr-bioc-edger
+dh_lintian -pr-bioc-edger
+dh_bugfiles -pr-bioc-edger
+dh_install -pr-bioc-edger
+dh_link -pr-bioc-edger
+dh_installmime -pr-bioc-edger
+dh_installgsettings -pr-bioc-edger
+dh_strip -pr-bioc-edger
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dh_compress -pr-bioc-edger
+ cd debian/r-bioc-edger
+ chmod a-x usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/changelog.Debian
+ gzip -9nf usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/changelog.Debian
+ cd '/build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c/r-bioc-edger-3.2.3~dfsg'
+dh_fixperms -pr-bioc-edger
+ find debian/r-bioc-edger -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-edger ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-edger/usr/share/doc -type f ! -regex 'debian/r-bioc-edger/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-edger/usr/share/man debian/r-bioc-edger/usr/man/ debian/r-bioc-edger/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/lib/perl5 debian/r-bioc-edger/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-edger/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
+dh_makeshlibs -pr-bioc-edger
+ rm -f debian/r-bioc-edger/DEBIAN/shlibs
+dh_installdeb -pr-bioc-edger
+dh_perl -pr-bioc-edger
+dh_shlibdeps -pr-bioc-edger
+ dpkg-shlibdeps -Tdebian/r-bioc-edger.substvars debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so was not linked against libgfortran.so.3 (it uses none of the library's symbols)
+dh_gencontrol -pr-bioc-edger
+ echo misc:Depends= >> debian/r-bioc-edger.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-edger.substvars -Pdebian/r-bioc-edger
+ chmod 644 debian/r-bioc-edger/DEBIAN/control
+ chown 0:0 debian/r-bioc-edger/DEBIAN/control
+dh_md5sums -pr-bioc-edger
+ (cd debian/r-bioc-edger >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-edger/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-edger/DEBIAN/md5sums
+dh_builddeb -pr-bioc-edger -- -Z xz
+ dpkg-deb -Z xz --build debian/r-bioc-edger ..
+dpkg-deb: building package `r-bioc-edger' in `../r-bioc-edger_3.2.3~dfsg-1_s390x.deb'.
+ dpkg-genchanges -B -ms390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../r-bioc-edger_3.2.3~dfsg-1_s390x.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20130517-1854
+
+r-bioc-edger_3.2.3~dfsg-1_s390x.changes:
+Format: 1.8
+Date: Fri, 17 May 2013 14:36:51 +0200
+Source: r-bioc-edger
+Binary: r-bioc-edger
+Architecture: s390x
+Version: 3.2.3~dfsg-1
+Distribution: sid
+Urgency: low
+Maintainer: s390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
+Description:
+ r-bioc-edger - Empirical analysis of digital gene expression data in R
+Changes:
+ r-bioc-edger (3.2.3~dfsg-1) unstable; urgency=low
+ .
+ [ Charles Plessy ]
+ 74f1a5f Imported Upstream version 2.6.10~dfsg
+ d2d70ab Corrected VCS URLs.
+ 44c9d4e Regression tests for autopkgtest.
+ .
+ [ Andreas Tille ]
+ * Imported new upstream version 3.2.3~dfsg
+ * debian/control
+ - Added myself as Uploader
+ - Add ${shlibs:Depends} to ensure dependency from libc
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - normalised format
+ - Removed unneeded Pre-Depends: dpkg (>= 1.15.6)
+ - Removed versioned dependency of r-base-dev
+ - Package is "Architecture: any" (rather than all)
+ * debian/source/format: Add explicit source format specification
+ * debian/copyright:
+ - Update Source location
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - Add years to Copyright field
+ * debian/upstream: inst/CITATION asks for citing this more recent
+ paper that is now on top of debian/upstream
+ * debian/rules: remove executable flag from installed documentation
+Checksums-Sha1:
+ 6a309a74f3c0d26ea19d843df660dcfd31554df2 1365970 r-bioc-edger_3.2.3~dfsg-1_s390x.deb
+Checksums-Sha256:
+ edac6db468ee55b834fb799f756f211ae1457c875f239a70fbb473b32e4c3f8c 1365970 r-bioc-edger_3.2.3~dfsg-1_s390x.deb
+Files:
+ 841428a3e9d2a125868e311687b07433 1365970 gnu-r optional r-bioc-edger_3.2.3~dfsg-1_s390x.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-edger_3.2.3~dfsg-1_s390x.deb
+───────────────────────────────────
+
+ new debian package, version 2.0.
+ size 1365970 bytes: control archive= 1861 bytes.
+ 957 bytes, 17 lines control
+ 2932 bytes, 38 lines md5sums
+ Package: r-bioc-edger
+ Version: 3.2.3~dfsg-1
+ Architecture: s390x
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 2482
+ Depends: r-base-core (>= 3.0.1-1), r-bioc-limma, libblas3 | libblas.so.3 | libatlas3-base, libc6 (>= 2.2), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3), liblapack3 | liblapack.so.3 | libatlas3-base, libstdc++6 (>= 4.2.1)
+ Suggests: r-cran-mass
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
+ Description: Empirical analysis of digital gene expression data in R
+ Bioconductor package for differential expression analysis of whole
+ transcriptome sequencing (RNA-seq) and digital gene expression
+ profiles with biological replication. It uses empirical Bayes
+ estimation and exact tests based on the negative binomial
+ distribution. It is also useful for differential signal analysis with
+ other types of genome-scale count data.
+
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/
+-rw-r--r-- root/root 6834 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/INDEX
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/R/
+-rw-r--r-- root/root 1056 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/R/edgeR
+-rw-r--r-- root/root 116079 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/R/edgeR.rdb
+-rw-r--r-- root/root 2296 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/R/edgeR.rdx
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/html/
+-rw-r--r-- root/root 1179 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/html/R.css
+-rw-r--r-- root/root 22781 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/html/00Index.html
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/libs/
+-rw-r--r-- root/root 48800 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/libs/edgeR.so
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/data/
+-rw-r--r-- root/root 263571 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/data/Tu98.txt
+-rw-r--r-- root/root 248500 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/data/NC1.txt
+-rw-r--r-- root/root 228426 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/data/NC2.txt
+-rw-r--r-- root/root 19 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/data/datalist
+-rw-r--r-- root/root 318545 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/data/Tu102.txt
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/help/
+-rw-r--r-- root/root 230919 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/help/edgeR.rdb
+-rw-r--r-- root/root 806 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/help/paths.rds
+-rw-r--r-- root/root 1342 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/help/aliases.rds
+-rw-r--r-- root/root 1764 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/help/edgeR.rdx
+-rw-r--r-- root/root 3776 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/help/AnIndex
+-rw-r--r-- root/root 804 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/NAMESPACE
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/doc/
+-rw-r--r-- root/root 49354 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/doc/edgeR.pdf
+-rw-r--r-- root/root 1826 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/doc/edgeR.Rnw
+-rw-r--r-- root/root 691 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/doc/index.html
+-rw-r--r-- root/root 879697 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/doc/edgeRUsersGuide.pdf
+-rw-r--r-- root/root 1108 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/DESCRIPTION
+-rw-r--r-- root/root 13746 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/NEWS.Rd
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/Meta/
+-rw-r--r-- root/root 368 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/Meta/nsInfo.rds
+-rw-r--r-- root/root 228 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/Meta/vignette.rds
+-rw-r--r-- root/root 3475 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/Meta/hsearch.rds
+-rw-r--r-- root/root 1640 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/Meta/links.rds
+-rw-r--r-- root/root 992 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/Meta/package.rds
+-rw-r--r-- root/root 161 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/Meta/data.rds
+-rw-r--r-- root/root 3639 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/Meta/Rd.rds
+-rw-r--r-- root/root 2057 2013-05-17 18:54 ./usr/lib/R/site-library/edgeR/CITATION
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/share/doc/r-bioc-edger/
+drwxr-xr-x root/root 0 2013-05-17 18:54 ./usr/share/doc/r-bioc-edger/tests/
+-rw-r--r-- root/root 5706 2013-04-08 00:02 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save.gz
+-rw-r--r-- root/root 1392 2013-04-03 22:17 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R.gz
+-rw-r--r-- root/root 816 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.test
+-rw-r--r-- root/root 274 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.Debian
+-rw-r--r-- root/root 1384 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/changelog.Debian.gz
+-rw-r--r-- root/root 1404 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/copyright
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-s390x-sbuild-817cde7f-c38b-47c8-98b4-73e11b80950a/sid-s390x-sbuild/build/buildd-r-bioc-edger_3.2.3~dfsg-1-s390x-NNUJ7c
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: s390x
+Build-Space: 6868
+Build-Time: 14
+Distribution: sid
+Install-Time: 43
+Job: r-bioc-edger_3.2.3~dfsg-1
+Package: r-bioc-edger
+Package-Time: 94
+Source-Version: 3.2.3~dfsg-1
+Space: 6868
+Status: successful
+Version: 3.2.3~dfsg-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20130517-1854
+Build needed 00:01:34, 6868k disc space
+Signature with key '06DAB0BE' requested:
diff --git a/sparc.log b/sparc.log
new file mode 100644
index 0000000..34bcd65
--- /dev/null
+++ b/sparc.log
@@ -0,0 +1,1038 @@
+From buildd at schroeder.debian.org Fri May 17 16:37:50 2013
+Return-path: <buildd at schroeder.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at schroeder.debian.org>)
+ id 1UdNfB-0007c7-8V
+ for logs at buildd.debian.org; Fri, 17 May 2013 16:37:49 +0000
+Received: from [2001:b68:ff:5:203:baff:fe5a:53a5] (helo=schroeder.debian.org)
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=schroeder.debian.org,
+ EMAIL=hostmaster at schroeder.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at schroeder.debian.org>)
+ id 1UdNfA-0000yb-Cc
+ for logs at buildd.debian.org; Fri, 17 May 2013 16:37:48 +0000
+Received: from buildd by schroeder.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at schroeder.debian.org>)
+ id 1UdNf8-0000zy-Jz; Fri, 17 May 2013 16:37:46 +0000
+Message-Id: <E1UdNf8-0000zy-Jz at schroeder.debian.org>
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
+Date: Fri, 17 May 2013 16:37:46 +0000
+From: buildd on schroeder <buildd at schroeder.debian.org>
+To: logs at buildd.debian.org,buildd-admin at schroeder.debian.org
+Subject: Log for successful build of r-bioc-edger_3.2.3~dfsg-1 on sparc
+ (dist=sid)
+Key-Id: B3666332
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on schroeder.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-edger 3.2.3~dfsg-1 (sparc) 17 May 2013 16:30 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-edger
+Version: 3.2.3~dfsg-1
+Source Version: 3.2.3~dfsg-1
+Architecture: sparc
+Get:1 http://ftp.hr.debian.org unstable InRelease [205 kB]
+Get:2 http://incoming.debian.org unstable InRelease [205 kB]
+Get:3 http://ftp.hr.debian.org unstable/main Sources [6727 kB]
+Get:4 http://incoming.debian.org buildd-unstable InRelease [111 kB]
+Get:5 http://incoming.debian.org unstable/main Sources [6727 kB]
+Get:6 http://ftp.hr.debian.org unstable/contrib Sources [53.7 kB]
+Get:7 http://ftp.hr.debian.org unstable/non-free Sources [103 kB]
+Get:8 http://ftp.hr.debian.org unstable/main sparc Packages [6218 kB]
+Get:9 http://ftp.hr.debian.org unstable/contrib sparc Packages [37.0 kB]
+Get:10 http://incoming.debian.org unstable/contrib Sources [53.7 kB]
+Get:11 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:12 http://incoming.debian.org unstable/main sparc Packages [6218 kB]
+Get:13 http://incoming.debian.org unstable/contrib sparc Packages [37.0 kB]
+Get:14 http://incoming.debian.org buildd-unstable/main Sources [105 kB]
+Get:15 http://incoming.debian.org buildd-unstable/contrib Sources [14 B]
+Get:16 http://incoming.debian.org buildd-unstable/non-free Sources [2683 B]
+Get:17 http://incoming.debian.org buildd-unstable/main sparc Packages [77.3 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib sparc Packages [14 B]
+Fetched 27.0 MB in 1min 2s (433 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-edger' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/debian-med/r-bioc-edger.git
+Need to get 1218 kB of source archives.
+Get:1 http://ftp.hr.debian.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (dsc) [1445 B]
+Get:2 http://ftp.hr.debian.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (tar) [1212 kB]
+Get:3 http://ftp.hr.debian.org/debian/ unstable/main r-bioc-edger 3.2.3~dfsg-1 (diff) [4311 B]
+Fetched 1218 kB in 0s (3185 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.6)
+fakeroot: already installed (1.18.4-2)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 34 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 34 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-edger build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, libc6-dev-sparc64, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev, r-bioc-limma
+Checking for already installed dependencies...
+base-files: already installed (7.2)
+base-passwd: already installed (3.5.26)
+bash: already installed (4.2+dfsg-1)
+bsdutils: already installed (1:2.20.1-5.3)
+coreutils: already installed (8.13-3.3)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.3.4)
+diffutils: already installed (1:3.2-8)
+dpkg: already installed (1.16.10)
+e2fsprogs: already installed (1.42.5-1.1)
+findutils: already installed (4.4.2-5)
+grep: already installed (2.14-1)
+gzip: already installed (1.5-1.1)
+hostname: already installed (3.12)
+libc-bin: already installed (2.13-38)
+login: already installed (1:4.1.5.1-1)
+mount: already installed (2.20.1-5.3)
+ncurses-base: already installed (5.9-10)
+ncurses-bin: already installed (5.9-10)
+perl-base: already installed (5.14.2-21)
+sed: already installed (4.2.2-1)
+sysvinit: already installed (2.88dsf-41)
+sysvinit-utils: already installed (2.88dsf-41)
+tar: already installed (1.26+dfsg-5)
+util-linux: already installed (2.20.1-5.3)
+libc6-dev: already installed (2.13-38)
+libc6-dev-sparc64: already installed (2.13-38)
+gcc: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.10 >= 1.13.5 is satisfied)
+debhelper: missing
+Using default version 9.20130516
+cdbs: missing
+r-base-dev: missing
+r-bioc-limma: missing
+Checking for dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev r-bioc-limma
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following package was automatically installed and is no longer required:
+ libmpc2
+Use 'apt-get autoremove' to remove it.
+The following extra packages will be installed:
+ bsdmainutils cpp-4.6 file fontconfig fontconfig-config fonts-dejavu-core
+ g++-4.6 gcc-4.6 gcc-4.6-base gcc-4.8-base gettext gettext-base gfortran
+ gfortran-4.6 groff-base html2text intltool-debian libasprintf-dev
+ libasprintf0c2 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6 libc6-dev
+ libc6-dev-sparc64 libc6-sparc64 libcairo2 libcroco3 libdatrie1 libexpat1
+ libffi6 libfontconfig1 libfreetype6 libgcc1 libgettextpo-dev libgettextpo0
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjbig0 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3 libmagic1 libmpc3 libncurses5 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0
+ libtiff5 libtinfo-dev libtinfo5 libunistring0 libx11-6 libx11-data libxau6
+ libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
+ libxrender1 libxss1 libxt6 man-db ncurses-bin po-debconf r-base-core tcl8.5
+ tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make
+ g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ libcloog-ppl1 libcloog-ppl0 libppl-c4 libppl12 libppl9 binutils-gold
+ gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib
+ gfortran-4.6-doc libgfortran3-dbg groff glibc-doc ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
+ texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
+ texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
+ texi2html tcl-tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev curl wget lynx-cur autopoint manpages-dev gcc-multilib
+ libglib2.0-data shared-mime-info libgpm2 xml-core libmail-sendmail-perl
+ r-recommended r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl
+ libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper file fontconfig fontconfig-config
+ fonts-dejavu-core gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libasprintf-dev libasprintf0c2 libblas-dev
+ libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi6
+ libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0 libgfortran3
+ libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev liblapack-dev liblapack3
+ libmagic1 libmpc3 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
+ libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0
+ libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0
+ libtiff5 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6
+ libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
+ libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev
+ r-bioc-limma tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+ zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base gcc-4.8-base libc-dev-bin libc6
+ libc6-dev libc6-dev-sparc64 libc6-sparc64 libgcc1 libgomp1 libncurses5
+ libstdc++6 libstdc++6-4.6-dev libtinfo5 ncurses-bin
+17 upgraded, 84 newly installed, 0 to remove and 17 not upgraded.
+Need to get 88.7 MB of archives.
+After this operation, 118 MB of additional disk space will be used.
+Get:1 http://ftp.hr.debian.org/debian/ unstable/main libc6-dev-sparc64 sparc 2.17-3 [2773 kB]
+Get:2 http://ftp.hr.debian.org/debian/ unstable/main libc6-dev sparc 2.17-3 [3040 kB]
+Get:3 http://ftp.hr.debian.org/debian/ unstable/main libc-dev-bin sparc 2.17-3 [229 kB]
+Get:4 http://ftp.hr.debian.org/debian/ unstable/main libc6-sparc64 sparc 2.17-3 [4797 kB]
+Get:5 http://ftp.hr.debian.org/debian/ unstable/main libgomp1 sparc 4.8.0-7 [23.1 kB]
+Get:6 http://ftp.hr.debian.org/debian/ unstable/main gcc-4.8-base sparc 4.8.0-7 [149 kB]
+Get:7 http://ftp.hr.debian.org/debian/ unstable/main libgcc1 sparc 1:4.8.0-7 [31.1 kB]
+Get:8 http://ftp.hr.debian.org/debian/ unstable/main libc6 sparc 2.17-3 [4488 kB]
+Get:9 http://ftp.hr.debian.org/debian/ unstable/main libstdc++6 sparc 4.8.0-7 [344 kB]
+Get:10 http://ftp.hr.debian.org/debian/ unstable/main libtinfo5 sparc 5.9+20130504-1 [287 kB]
+Get:11 http://ftp.hr.debian.org/debian/ unstable/main libncurses5 sparc 5.9+20130504-1 [95.8 kB]
+Get:12 http://ftp.hr.debian.org/debian/ unstable/main ncurses-bin sparc 5.9+20130504-1 [359 kB]
+Get:13 http://ftp.hr.debian.org/debian/ unstable/main libpipeline1 sparc 1.2.3-1 [36.9 kB]
+Get:14 http://ftp.hr.debian.org/debian/ unstable/main groff-base sparc 1.22.2-2 [693 kB]
+Get:15 http://ftp.hr.debian.org/debian/ unstable/main bsdmainutils sparc 9.0.5 [204 kB]
+Get:16 http://ftp.hr.debian.org/debian/ unstable/main man-db sparc 2.6.3-6 [865 kB]
+Get:17 http://ftp.hr.debian.org/debian/ unstable/main libasprintf0c2 sparc 0.18.1.1-10 [26.9 kB]
+Get:18 http://ftp.hr.debian.org/debian/ unstable/main libmagic1 sparc 1:5.14-1 [212 kB]
+Get:19 http://ftp.hr.debian.org/debian/ unstable/main libpcre3 sparc 1:8.31-2 [252 kB]
+Get:20 http://ftp.hr.debian.org/debian/ unstable/main libxml2 sparc 2.8.0+dfsg1-7+nmu1 [826 kB]
+Get:21 http://ftp.hr.debian.org/debian/ unstable/main libexpat1 sparc 2.1.0-3 [131 kB]
+Get:22 http://ftp.hr.debian.org/debian/ unstable/main libfreetype6 sparc 2.4.9-1.1 [409 kB]
+Get:23 http://ftp.hr.debian.org/debian/ unstable/main ucf all 3.0025+nmu3 [70.8 kB]
+Get:24 http://ftp.hr.debian.org/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
+Get:25 http://ftp.hr.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
+Get:26 http://ftp.hr.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:27 http://ftp.hr.debian.org/debian/ unstable/main libfontconfig1 sparc 2.9.0-7.1 [290 kB]
+Get:28 http://ftp.hr.debian.org/debian/ unstable/main libpixman-1-0 sparc 0.26.0-4 [393 kB]
+Get:29 http://ftp.hr.debian.org/debian/ unstable/main libpng12-0 sparc 1.2.49-4 [181 kB]
+Get:30 http://ftp.hr.debian.org/debian/ unstable/main libxau6 sparc 1:1.0.7-1 [17.6 kB]
+Get:31 http://ftp.hr.debian.org/debian/ unstable/main libxdmcp6 sparc 1:1.1.1-1 [25.1 kB]
+Get:32 http://ftp.hr.debian.org/debian/ unstable/main libxcb1 sparc 1.8.1-2 [39.9 kB]
+Get:33 http://ftp.hr.debian.org/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:34 http://ftp.hr.debian.org/debian/ unstable/main libx11-6 sparc 2:1.5.0-1 [841 kB]
+Get:35 http://ftp.hr.debian.org/debian/ unstable/main libxcb-render0 sparc 1.8.1-2 [15.8 kB]
+Get:36 http://ftp.hr.debian.org/debian/ unstable/main libxcb-shm0 sparc 1.8.1-2 [9894 B]
+Get:37 http://ftp.hr.debian.org/debian/ unstable/main libxext6 sparc 2:1.3.1-2 [48.2 kB]
+Get:38 http://ftp.hr.debian.org/debian/ unstable/main libxrender1 sparc 1:0.9.7-1 [29.2 kB]
+Get:39 http://ftp.hr.debian.org/debian/ unstable/main libcairo2 sparc 1.12.14-4 [959 kB]
+Get:40 http://ftp.hr.debian.org/debian/ unstable/main libffi6 sparc 3.0.13-4 [19.7 kB]
+Get:41 http://ftp.hr.debian.org/debian/ unstable/main libglib2.0-0 sparc 2.36.1-2build1 [1849 kB]
+Get:42 http://ftp.hr.debian.org/debian/ unstable/main libcroco3 sparc 0.6.8-2 [115 kB]
+Get:43 http://ftp.hr.debian.org/debian/ unstable/main libdatrie1 sparc 0.2.6-2 [27.2 kB]
+Get:44 http://ftp.hr.debian.org/debian/ unstable/main libunistring0 sparc 0.9.3-5 [416 kB]
+Get:45 http://ftp.hr.debian.org/debian/ unstable/main libgettextpo0 sparc 0.18.1.1-10 [130 kB]
+Get:46 http://ftp.hr.debian.org/debian/ unstable/main libgfortran3 sparc 4.8.0-7 [266 kB]
+Get:47 http://ftp.hr.debian.org/debian/ unstable/main x11-common all 1:7.7+3 [284 kB]
+Get:48 http://ftp.hr.debian.org/debian/ unstable/main libice6 sparc 2:1.0.8-2 [56.0 kB]
+Get:49 http://ftp.hr.debian.org/debian/ unstable/main libjpeg8 sparc 8d-1 [137 kB]
+Get:50 http://ftp.hr.debian.org/debian/ unstable/main libthai-data all 0.1.19-2 [156 kB]
+Get:51 http://ftp.hr.debian.org/debian/ unstable/main libthai0 sparc 0.1.19-2 [40.8 kB]
+Get:52 http://ftp.hr.debian.org/debian/ unstable/main libxft2 sparc 2.3.1-1 [56.0 kB]
+Get:53 http://ftp.hr.debian.org/debian/ unstable/main fontconfig sparc 2.9.0-7.1 [347 kB]
+Get:54 http://ftp.hr.debian.org/debian/ unstable/main libpango1.0-0 sparc 1.30.0-1 [422 kB]
+Get:55 http://ftp.hr.debian.org/debian/ unstable/main libpaper1 sparc 1.1.24+nmu2 [21.2 kB]
+Get:56 http://ftp.hr.debian.org/debian/ unstable/main libpcrecpp0 sparc 1:8.31-2 [126 kB]
+Get:57 http://ftp.hr.debian.org/debian/ unstable/main libsm6 sparc 2:1.2.1-2 [32.1 kB]
+Get:58 http://ftp.hr.debian.org/debian/ unstable/main libjbig0 sparc 2.0-2 [31.6 kB]
+Get:59 http://ftp.hr.debian.org/debian/ unstable/main libtiff5 sparc 4.0.2-6 [223 kB]
+Get:60 http://ftp.hr.debian.org/debian/ unstable/main libxss1 sparc 1:1.2.2-1 [16.7 kB]
+Get:61 http://ftp.hr.debian.org/debian/ unstable/main libxt6 sparc 1:1.1.3-1 [181 kB]
+Get:62 http://ftp.hr.debian.org/debian/ unstable/main libmpc3 sparc 1.0.1-1 [37.4 kB]
+Get:63 http://ftp.hr.debian.org/debian/ unstable/main file sparc 1:5.14-1 [53.4 kB]
+Get:64 http://ftp.hr.debian.org/debian/ unstable/main gettext-base sparc 0.18.1.1-10 [148 kB]
+Get:65 http://ftp.hr.debian.org/debian/ unstable/main cdbs all 0.4.121 [80.5 kB]
+Get:66 http://ftp.hr.debian.org/debian/ unstable/main libstdc++6-4.6-dev sparc 4.6.4-2 [1661 kB]
+Get:67 http://ftp.hr.debian.org/debian/ unstable/main g++-4.6 sparc 4.6.4-2 [5479 kB]
+Get:68 http://ftp.hr.debian.org/debian/ unstable/main gcc-4.6 sparc 4.6.4-2 [3658 kB]
+Get:69 http://ftp.hr.debian.org/debian/ unstable/main cpp-4.6 sparc 4.6.4-2 [3461 kB]
+Get:70 http://ftp.hr.debian.org/debian/ unstable/main gcc-4.6-base sparc 4.6.4-2 [143 kB]
+Get:71 http://ftp.hr.debian.org/debian/ unstable/main html2text sparc 1.3.2a-15 [100 kB]
+Get:72 http://ftp.hr.debian.org/debian/ unstable/main libasprintf-dev sparc 0.18.1.1-10 [26.6 kB]
+Get:73 http://ftp.hr.debian.org/debian/ unstable/main libgettextpo-dev sparc 0.18.1.1-10 [172 kB]
+Get:74 http://ftp.hr.debian.org/debian/ unstable/main gettext sparc 0.18.1.1-10 [1745 kB]
+Get:75 http://ftp.hr.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:76 http://ftp.hr.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:77 http://ftp.hr.debian.org/debian/ unstable/main debhelper all 9.20130516 [708 kB]
+Get:78 http://ftp.hr.debian.org/debian/ unstable/main gfortran-4.6 sparc 4.6.4-2 [4076 kB]
+Get:79 http://ftp.hr.debian.org/debian/ unstable/main gfortran sparc 4:4.6.3-8 [1124 B]
+Get:80 http://ftp.hr.debian.org/debian/ unstable/main libblas3 sparc 1.2.20110419-5 [191 kB]
+Get:81 http://ftp.hr.debian.org/debian/ unstable/main libblas-dev sparc 1.2.20110419-5 [208 kB]
+Get:82 http://ftp.hr.debian.org/debian/ unstable/main libbz2-dev sparc 1.0.6-4 [36.3 kB]
+Get:83 http://ftp.hr.debian.org/debian/ unstable/main libjpeg8-dev sparc 8d-1 [243 kB]
+Get:84 http://ftp.hr.debian.org/debian/ unstable/main liblapack3 sparc 3.4.2+dfsg-1 [4089 kB]
+Get:85 http://ftp.hr.debian.org/debian/ unstable/main liblapack-dev sparc 3.4.2+dfsg-1 [4840 kB]
+Get:86 http://ftp.hr.debian.org/debian/ unstable/main libtinfo-dev sparc 5.9+20130504-1 [101 kB]
+Get:87 http://ftp.hr.debian.org/debian/ unstable/main libncurses5-dev sparc 5.9+20130504-1 [207 kB]
+Get:88 http://ftp.hr.debian.org/debian/ unstable/main libpaper-utils sparc 1.1.24+nmu2 [17.8 kB]
+Get:89 http://ftp.hr.debian.org/debian/ unstable/main libpcre3-dev sparc 1:8.31-2 [360 kB]
+Get:90 http://ftp.hr.debian.org/debian/ unstable/main zlib1g-dev sparc 1:1.2.8.dfsg-1 [213 kB]
+Get:91 http://ftp.hr.debian.org/debian/ unstable/main libpng12-dev sparc 1.2.49-4 [263 kB]
+Get:92 http://ftp.hr.debian.org/debian/ unstable/main libreadline6-dev sparc 6.2+dfsg-0.1 [184 kB]
+Get:93 http://ftp.hr.debian.org/debian/ unstable/main libreadline-dev sparc 6.2+dfsg-0.1 [898 B]
+Get:94 http://ftp.hr.debian.org/debian/ unstable/main zip sparc 3.0-7 [332 kB]
+Get:95 http://ftp.hr.debian.org/debian/ unstable/main unzip sparc 6.0-9 [191 kB]
+Get:96 http://ftp.hr.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:97 http://ftp.hr.debian.org/debian/ unstable/main tcl8.5 sparc 8.5.11-2 [1582 kB]
+Get:98 http://ftp.hr.debian.org/debian/ unstable/main tk8.5 sparc 8.5.11-2 [1130 kB]
+Get:99 http://ftp.hr.debian.org/debian/ unstable/main r-base-core sparc 3.0.1-1 [21.4 MB]
+Get:100 http://ftp.hr.debian.org/debian/ unstable/main r-base-dev all 3.0.1-1 [3896 B]
+Get:101 http://ftp.hr.debian.org/debian/ unstable/main r-bioc-limma sparc 3.16.3~dfsg-1 [1617 kB]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 88.7 MB in 58s (1518 kB/s)
+(Reading database ... 11171 files and directories currently installed.)
+Preparing to replace libc6-dev-sparc64 2.13-38 (using .../libc6-dev-sparc64_2.17-3_sparc.deb) ...
+Unpacking replacement libc6-dev-sparc64 ...
+Preparing to replace libc6-dev:sparc 2.13-38 (using .../libc6-dev_2.17-3_sparc.deb) ...
+Unpacking replacement libc6-dev:sparc ...
+Preparing to replace libc-dev-bin 2.13-38 (using .../libc-dev-bin_2.17-3_sparc.deb) ...
+Unpacking replacement libc-dev-bin ...
+Preparing to replace libc6-sparc64 2.13-38 (using .../libc6-sparc64_2.17-3_sparc.deb) ...
+Unpacking replacement libc6-sparc64 ...
+Preparing to replace libgomp1:sparc 4.8.0-6 (using .../libgomp1_4.8.0-7_sparc.deb) ...
+Unpacking replacement libgomp1:sparc ...
+Preparing to replace gcc-4.8-base:sparc 4.8.0-6 (using .../gcc-4.8-base_4.8.0-7_sparc.deb) ...
+Unpacking replacement gcc-4.8-base:sparc ...
+Setting up gcc-4.8-base:sparc (4.8.0-7) ...
+(Reading database ... 11193 files and directories currently installed.)
+Preparing to replace libgcc1:sparc 1:4.8.0-6 (using .../libgcc1_1%3a4.8.0-7_sparc.deb) ...
+Unpacking replacement libgcc1:sparc ...
+Setting up libgcc1:sparc (1:4.8.0-7) ...
+(Reading database ... 11193 files and directories currently installed.)
+Preparing to replace libc6:sparc 2.13-38 (using .../libc6_2.17-3_sparc.deb) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Unpacking replacement libc6:sparc ...
+Setting up libc6:sparc (2.17-3) ...
+Checking for services that may need to be restarted...
+Checking init scripts...
+Nothing to restart.
+(Reading database ... 11199 files and directories currently installed.)
+Preparing to replace libstdc++6:sparc 4.8.0-6 (using .../libstdc++6_4.8.0-7_sparc.deb) ...
+Unpacking replacement libstdc++6:sparc ...
+Setting up libstdc++6:sparc (4.8.0-7) ...
+(Reading database ... 11199 files and directories currently installed.)
+Preparing to replace libtinfo5:sparc 5.9-10 (using .../libtinfo5_5.9+20130504-1_sparc.deb) ...
+Unpacking replacement libtinfo5:sparc ...
+Setting up libtinfo5:sparc (5.9+20130504-1) ...
+(Reading database ... 11199 files and directories currently installed.)
+Preparing to replace libncurses5:sparc 5.9-10 (using .../libncurses5_5.9+20130504-1_sparc.deb) ...
+Unpacking replacement libncurses5:sparc ...
+Setting up libncurses5:sparc (5.9+20130504-1) ...
+(Reading database ... 11199 files and directories currently installed.)
+Preparing to replace ncurses-bin 5.9-10 (using .../ncurses-bin_5.9+20130504-1_sparc.deb) ...
+Unpacking replacement ncurses-bin ...
+Setting up ncurses-bin (5.9+20130504-1) ...
+Selecting previously unselected package libpipeline1:sparc.
+(Reading database ... 11197 files and directories currently installed.)
+Unpacking libpipeline1:sparc (from .../libpipeline1_1.2.3-1_sparc.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.22.2-2_sparc.deb) ...
+Selecting previously unselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_sparc.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.3-6_sparc.deb) ...
+Selecting previously unselected package libasprintf0c2:sparc.
+Unpacking libasprintf0c2:sparc (from .../libasprintf0c2_0.18.1.1-10_sparc.deb) ...
+Selecting previously unselected package libmagic1:sparc.
+Unpacking libmagic1:sparc (from .../libmagic1_1%3a5.14-1_sparc.deb) ...
+Selecting previously unselected package libpcre3:sparc.
+Unpacking libpcre3:sparc (from .../libpcre3_1%3a8.31-2_sparc.deb) ...
+Selecting previously unselected package libxml2:sparc.
+Unpacking libxml2:sparc (from .../libxml2_2.8.0+dfsg1-7+nmu1_sparc.deb) ...
+Selecting previously unselected package libexpat1:sparc.
+Unpacking libexpat1:sparc (from .../libexpat1_2.1.0-3_sparc.deb) ...
+Selecting previously unselected package libfreetype6:sparc.
+Unpacking libfreetype6:sparc (from .../libfreetype6_2.4.9-1.1_sparc.deb) ...
+Selecting previously unselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ...
+Moving old data out of the way
+Selecting previously unselected package fonts-dejavu-core.
+Unpacking fonts-dejavu-core (from .../fonts-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33+svn2514-3_all.deb) ...
+Selecting previously unselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ...
+Selecting previously unselected package libfontconfig1:sparc.
+Unpacking libfontconfig1:sparc (from .../libfontconfig1_2.9.0-7.1_sparc.deb) ...
+Selecting previously unselected package libpixman-1-0:sparc.
+Unpacking libpixman-1-0:sparc (from .../libpixman-1-0_0.26.0-4_sparc.deb) ...
+Selecting previously unselected package libpng12-0:sparc.
+Unpacking libpng12-0:sparc (from .../libpng12-0_1.2.49-4_sparc.deb) ...
+Selecting previously unselected package libxau6:sparc.
+Unpacking libxau6:sparc (from .../libxau6_1%3a1.0.7-1_sparc.deb) ...
+Selecting previously unselected package libxdmcp6:sparc.
+Unpacking libxdmcp6:sparc (from .../libxdmcp6_1%3a1.1.1-1_sparc.deb) ...
+Selecting previously unselected package libxcb1:sparc.
+Unpacking libxcb1:sparc (from .../libxcb1_1.8.1-2_sparc.deb) ...
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ...
+Selecting previously unselected package libx11-6:sparc.
+Unpacking libx11-6:sparc (from .../libx11-6_2%3a1.5.0-1_sparc.deb) ...
+Selecting previously unselected package libxcb-render0:sparc.
+Unpacking libxcb-render0:sparc (from .../libxcb-render0_1.8.1-2_sparc.deb) ...
+Selecting previously unselected package libxcb-shm0:sparc.
+Unpacking libxcb-shm0:sparc (from .../libxcb-shm0_1.8.1-2_sparc.deb) ...
+Selecting previously unselected package libxext6:sparc.
+Unpacking libxext6:sparc (from .../libxext6_2%3a1.3.1-2_sparc.deb) ...
+Selecting previously unselected package libxrender1:sparc.
+Unpacking libxrender1:sparc (from .../libxrender1_1%3a0.9.7-1_sparc.deb) ...
+Selecting previously unselected package libcairo2:sparc.
+Unpacking libcairo2:sparc (from .../libcairo2_1.12.14-4_sparc.deb) ...
+Selecting previously unselected package libffi6:sparc.
+Unpacking libffi6:sparc (from .../libffi6_3.0.13-4_sparc.deb) ...
+Selecting previously unselected package libglib2.0-0:sparc.
+Unpacking libglib2.0-0:sparc (from .../libglib2.0-0_2.36.1-2build1_sparc.deb) ...
+Selecting previously unselected package libcroco3:sparc.
+Unpacking libcroco3:sparc (from .../libcroco3_0.6.8-2_sparc.deb) ...
+Selecting previously unselected package libdatrie1:sparc.
+Unpacking libdatrie1:sparc (from .../libdatrie1_0.2.6-2_sparc.deb) ...
+Selecting previously unselected package libunistring0:sparc.
+Unpacking libunistring0:sparc (from .../libunistring0_0.9.3-5_sparc.deb) ...
+Selecting previously unselected package libgettextpo0:sparc.
+Unpacking libgettextpo0:sparc (from .../libgettextpo0_0.18.1.1-10_sparc.deb) ...
+Selecting previously unselected package libgfortran3:sparc.
+Unpacking libgfortran3:sparc (from .../libgfortran3_4.8.0-7_sparc.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.7+3_all.deb) ...
+Selecting previously unselected package libice6:sparc.
+Unpacking libice6:sparc (from .../libice6_2%3a1.0.8-2_sparc.deb) ...
+Selecting previously unselected package libjpeg8:sparc.
+Unpacking libjpeg8:sparc (from .../libjpeg8_8d-1_sparc.deb) ...
+Selecting previously unselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.19-2_all.deb) ...
+Selecting previously unselected package libthai0:sparc.
+Unpacking libthai0:sparc (from .../libthai0_0.1.19-2_sparc.deb) ...
+Selecting previously unselected package libxft2:sparc.
+Unpacking libxft2:sparc (from .../libxft2_2.3.1-1_sparc.deb) ...
+Selecting previously unselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_sparc.deb) ...
+Selecting previously unselected package libpango1.0-0:sparc.
+Unpacking libpango1.0-0:sparc (from .../libpango1.0-0_1.30.0-1_sparc.deb) ...
+Selecting previously unselected package libpaper1:sparc.
+Unpacking libpaper1:sparc (from .../libpaper1_1.1.24+nmu2_sparc.deb) ...
+Selecting previously unselected package libpcrecpp0:sparc.
+Unpacking libpcrecpp0:sparc (from .../libpcrecpp0_1%3a8.31-2_sparc.deb) ...
+Selecting previously unselected package libsm6:sparc.
+Unpacking libsm6:sparc (from .../libsm6_2%3a1.2.1-2_sparc.deb) ...
+Selecting previously unselected package libjbig0:sparc.
+Unpacking libjbig0:sparc (from .../libjbig0_2.0-2_sparc.deb) ...
+Selecting previously unselected package libtiff5:sparc.
+Unpacking libtiff5:sparc (from .../libtiff5_4.0.2-6_sparc.deb) ...
+Selecting previously unselected package libxss1:sparc.
+Unpacking libxss1:sparc (from .../libxss1_1%3a1.2.2-1_sparc.deb) ...
+Selecting previously unselected package libxt6:sparc.
+Unpacking libxt6:sparc (from .../libxt6_1%3a1.1.3-1_sparc.deb) ...
+Selecting previously unselected package libmpc3:sparc.
+Unpacking libmpc3:sparc (from .../libmpc3_1.0.1-1_sparc.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_1%3a5.14-1_sparc.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_sparc.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
+Preparing to replace libstdc++6-4.6-dev 4.6.3-15 (using .../libstdc++6-4.6-dev_4.6.4-2_sparc.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.3-15 (using .../g++-4.6_4.6.4-2_sparc.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.3-15 (using .../gcc-4.6_4.6.4-2_sparc.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace cpp-4.6 4.6.3-15 (using .../cpp-4.6_4.6.4-2_sparc.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace gcc-4.6-base:sparc 4.6.3-15 (using .../gcc-4.6-base_4.6.4-2_sparc.deb) ...
+Unpacking replacement gcc-4.6-base:sparc ...
+Selecting previously unselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_sparc.deb) ...
+Selecting previously unselected package libasprintf-dev:sparc.
+Unpacking libasprintf-dev:sparc (from .../libasprintf-dev_0.18.1.1-10_sparc.deb) ...
+Selecting previously unselected package libgettextpo-dev:sparc.
+Unpacking libgettextpo-dev:sparc (from .../libgettextpo-dev_0.18.1.1-10_sparc.deb) ...
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-10_sparc.deb) ...
+Selecting previously unselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously unselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_9.20130516_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.4-2_sparc.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.3-8_sparc.deb) ...
+Selecting previously unselected package libblas3.
+Unpacking libblas3 (from .../libblas3_1.2.20110419-5_sparc.deb) ...
+Selecting previously unselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_sparc.deb) ...
+Selecting previously unselected package libbz2-dev:sparc.
+Unpacking libbz2-dev:sparc (from .../libbz2-dev_1.0.6-4_sparc.deb) ...
+Selecting previously unselected package libjpeg8-dev:sparc.
+Unpacking libjpeg8-dev:sparc (from .../libjpeg8-dev_8d-1_sparc.deb) ...
+Selecting previously unselected package liblapack3.
+Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_sparc.deb) ...
+Selecting previously unselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.4.2+dfsg-1_sparc.deb) ...
+Selecting previously unselected package libtinfo-dev:sparc.
+Unpacking libtinfo-dev:sparc (from .../libtinfo-dev_5.9+20130504-1_sparc.deb) ...
+Selecting previously unselected package libncurses5-dev:sparc.
+Unpacking libncurses5-dev:sparc (from .../libncurses5-dev_5.9+20130504-1_sparc.deb) ...
+Selecting previously unselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_sparc.deb) ...
+Selecting previously unselected package libpcre3-dev:sparc.
+Unpacking libpcre3-dev:sparc (from .../libpcre3-dev_1%3a8.31-2_sparc.deb) ...
+Selecting previously unselected package zlib1g-dev:sparc.
+Unpacking zlib1g-dev:sparc (from .../zlib1g-dev_1%3a1.2.8.dfsg-1_sparc.deb) ...
+Selecting previously unselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_sparc.deb) ...
+Selecting previously unselected package libreadline6-dev:sparc.
+Unpacking libreadline6-dev:sparc (from .../libreadline6-dev_6.2+dfsg-0.1_sparc.deb) ...
+Selecting previously unselected package libreadline-dev:sparc.
+Unpacking libreadline-dev:sparc (from .../libreadline-dev_6.2+dfsg-0.1_sparc.deb) ...
+Selecting previously unselected package zip.
+Unpacking zip (from .../archives/zip_3.0-7_sparc.deb) ...
+Selecting previously unselected package unzip.
+Unpacking unzip (from .../archives/unzip_6.0-9_sparc.deb) ...
+Selecting previously unselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
+Selecting previously unselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_sparc.deb) ...
+Selecting previously unselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_sparc.deb) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_3.0.1-1_sparc.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_3.0.1-1_all.deb) ...
+Selecting previously unselected package r-bioc-limma.
+Unpacking r-bioc-limma (from .../r-bioc-limma_3.16.3~dfsg-1_sparc.deb) ...
+Setting up libc6-sparc64 (2.17-3) ...
+Setting up libc-dev-bin (2.17-3) ...
+Setting up libc6-dev:sparc (2.17-3) ...
+Setting up libc6-dev-sparc64 (2.17-3) ...
+Setting up libgomp1:sparc (4.8.0-7) ...
+Setting up libpipeline1:sparc (1.2.3-1) ...
+Setting up groff-base (1.22.2-2) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.3-6) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:sparc (0.18.1.1-10) ...
+Setting up libmagic1:sparc (1:5.14-1) ...
+Setting up libpcre3:sparc (1:8.31-2) ...
+Setting up libxml2:sparc (2.8.0+dfsg1-7+nmu1) ...
+Setting up libexpat1:sparc (2.1.0-3) ...
+Setting up libfreetype6:sparc (2.4.9-1.1) ...
+Setting up ucf (3.0025+nmu3) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:sparc (2.9.0-7.1) ...
+Setting up libpixman-1-0:sparc (0.26.0-4) ...
+Setting up libpng12-0:sparc (1.2.49-4) ...
+Setting up libxau6:sparc (1:1.0.7-1) ...
+Setting up libxdmcp6:sparc (1:1.1.1-1) ...
+Setting up libxcb1:sparc (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:sparc (2:1.5.0-1) ...
+Setting up libxcb-render0:sparc (1.8.1-2) ...
+Setting up libxcb-shm0:sparc (1.8.1-2) ...
+Setting up libxext6:sparc (2:1.3.1-2) ...
+Setting up libxrender1:sparc (1:0.9.7-1) ...
+Setting up libcairo2:sparc (1.12.14-4) ...
+Setting up libffi6:sparc (3.0.13-4) ...
+Setting up libglib2.0-0:sparc (2.36.1-2build1) ...
+No schema files found: doing nothing.
+Setting up libcroco3:sparc (0.6.8-2) ...
+Setting up libdatrie1:sparc (0.2.6-2) ...
+Setting up libunistring0:sparc (0.9.3-5) ...
+Setting up libgettextpo0:sparc (0.18.1.1-10) ...
+Setting up libgfortran3:sparc (4.8.0-7) ...
+Setting up x11-common (1:7.7+3) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6:sparc (2:1.0.8-2) ...
+Setting up libjpeg8:sparc (8d-1) ...
+Setting up libthai-data (0.1.19-2) ...
+Setting up libthai0:sparc (0.1.19-2) ...
+Setting up libxft2:sparc (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
+Regenerating fonts cache... done.
+Setting up libpango1.0-0:sparc (1.30.0-1) ...
+Setting up libpaper1:sparc (1.1.24+nmu2) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpcrecpp0:sparc (1:8.31-2) ...
+Setting up libsm6:sparc (2:1.2.1-2) ...
+Setting up libjbig0:sparc (2.0-2) ...
+Setting up libtiff5:sparc (4.0.2-6) ...
+Setting up libxss1:sparc (1:1.2.2-1) ...
+Setting up libxt6:sparc (1:1.1.3-1) ...
+Setting up libmpc3:sparc (1.0.1-1) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
+Setting up gcc-4.6-base:sparc (4.6.4-2) ...
+Setting up cpp-4.6 (4.6.4-2) ...
+Setting up gcc-4.6 (4.6.4-2) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libasprintf-dev:sparc (0.18.1.1-10) ...
+Setting up libgettextpo-dev:sparc (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20130516) ...
+Setting up gfortran-4.6 (4.6.4-2) ...
+Setting up gfortran (4:4.6.3-8) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:sparc (1.0.6-4) ...
+Setting up libjpeg8-dev:sparc (8d-1) ...
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:sparc (5.9+20130504-1) ...
+Setting up libncurses5-dev:sparc (5.9+20130504-1) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:sparc (1:8.31-2) ...
+Setting up zlib1g-dev:sparc (1:1.2.8.dfsg-1) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:sparc (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:sparc (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.1-1) ...
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (3.0.1-1) ...
+Setting up r-bioc-limma (3.16.3~dfsg-1) ...
+Setting up g++-4.6 (4.6.4-2) ...
+Setting up libstdc++6-4.6-dev (4.6.4-2) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following package was automatically installed and is no longer required:
+ libmpc2
+Use 'apt-get autoremove' to remove it.
+0 upgraded, 0 newly installed, 0 to remove and 17 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.32-5-sparc64-smp sparc (sparc64)
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.6_4.6.4-2 gcc-4.6_4.6.4-2 libc6-dev_2.17-3 libstdc++6_4.8.0-7 libstdc++6-4.6-dev_4.6.4-2 linux-libc-dev_3.2.41-2
+Package versions: apt_0.9.8 base-files_7.2 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.13-3.3 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2 dash_0.5.7-3 debconf_1.5.50 debfoster_2.7-1.2 debhelper_9.20130516 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-1 findutils_4.4.2-5 fontco [...]
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Fri May 17 13:25:10 2013 UTC using DSA key ID C09FD35A
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-edger_3.2.3~dfsg-1.dsc
+dpkg-source: info: extracting r-bioc-edger in r-bioc-edger-3.2.3~dfsg
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg.orig.tar.gz
+dpkg-source: info: unpacking r-bioc-edger_3.2.3~dfsg-1.debian.tar.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: source package r-bioc-edger
+dpkg-buildpackage: source version 3.2.3~dfsg-1
+ dpkg-source --before-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: host architecture sparc
+ fakeroot debian/rules clean
+test -x debian/rules
+dh_testroot
+dh_clean
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build-arch
+test -x debian/rules
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+ fakeroot debian/rules binary-arch
+test -x debian/rules
+dh_testroot
+dh_prep
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+dh_installdirs -A
+ install -d debian/r-bioc-edger
+mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
+dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-edger/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 3.0.1-1)" >> debian/r-bioc-edger.substvars
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-sparc-GfZJkK/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-edger_3.2.3~dfsg-1-sparc-GfZJkK/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'edgeR' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-sparc-GfZJkK/r-bioc-edger-3.2.3~dfsg/src'
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_exact_test_by_deviance.cpp -o R_exact_test_by_deviance.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_loess_by_col.cpp -o R_loess_by_col.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_cr_adjust.cpp -o R_cr_adjust.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_levenberg.cpp -o R_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_maximize_interpolant.cpp -o R_maximize_interpolant.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_one_group.cpp -o R_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c R_simple_good_turing.cpp -o R_simple_good_turing.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c core/adj_coxreid.cpp -o core/adj_coxreid.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c core/glm_levenberg.cpp -o core/glm_levenberg.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c core/glm_one_group.cpp -o core/glm_one_group.o
+g++ -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c core/interpolator.cpp -o core/interpolator.o
+gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./core -I. -fPIC -O3 -pipe -g -c core/fmm_spline.c -o core/fmm_spline.o
+g++ -shared -o edgeR.so R_exact_test_by_deviance.o R_loess_by_col.o R_cr_adjust.o R_levenberg.o R_maximize_interpolant.o R_one_group.o R_simple_good_turing.o core/adj_coxreid.o core/glm_levenberg.o core/glm_one_group.o core/interpolator.o core/fmm_spline.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-sparc-GfZJkK/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Entering directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-sparc-GfZJkK/r-bioc-edger-3.2.3~dfsg/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-edger_3.2.3~dfsg-1-sparc-GfZJkK/r-bioc-edger-3.2.3~dfsg/src'
+installing to /build/buildd-r-bioc-edger_3.2.3~dfsg-1-sparc-GfZJkK/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs
+** R
+** data
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices
+** installing vignettes
+** testing if installed package can be loaded
+* DONE (edgeR)
+rm -vf /build/buildd-r-bioc-edger_3.2.3~dfsg-1-sparc-GfZJkK/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-sparc-GfZJkK/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/COPYING \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-sparc-GfZJkK/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-edger_3.2.3~dfsg-1-sparc-GfZJkK/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-edger_3.2.3~dfsg-1-sparc-GfZJkK/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/lintian/overrides/r-bioc-edger; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-edger.substvars
+dh_installdirs -pr-bioc-edger
+chmod 644 debian/r-bioc-edger/usr/lib/R/site-library/edgeR/doc/*
+dh_installdocs -pr-bioc-edger
+ install -g 0 -o 0 -d debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd-r-bioc-edger_3.2.3~dfsg-1-sparc-GfZJkK/r-bioc-edger-3.2.3~dfsg/debian/r-bioc-edger/usr/share/doc/r-bioc-edger \;
+ cp -a debian/README.test debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ chown -R 0:0 debian/r-bioc-edger/usr/share/doc
+ chmod -R go=rX debian/r-bioc-edger/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-edger/usr/share/doc
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-edger/usr/share/doc/r-bioc-edger/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-edger/usr/share/doc/r-bioc-edger/copyright
+dh_installexamples -pr-bioc-edger
+dh_installman -pr-bioc-edger
+dh_installinfo -pr-bioc-edger
+dh_installmenu -pr-bioc-edger
+dh_installcron -pr-bioc-edger
+dh_installinit -pr-bioc-edger
+dh_installdebconf -pr-bioc-edger
+ install -o 0 -g 0 -d debian/r-bioc-edger/DEBIAN
+dh_installemacsen -pr-bioc-edger
+dh_installcatalogs -pr-bioc-edger
+ grep -s -v '^misc:Depends=' debian/r-bioc-edger.substvars > debian/r-bioc-edger.substvars.new || true
+ mv debian/r-bioc-edger.substvars.new debian/r-bioc-edger.substvars
+dh_installpam -pr-bioc-edger
+dh_installlogrotate -pr-bioc-edger
+dh_installlogcheck -pr-bioc-edger
+dh_installchangelogs -pr-bioc-edger
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-edger/usr/share/doc/r-bioc-edger/changelog.Debian
+dh_installudev -pr-bioc-edger
+dh_lintian -pr-bioc-edger
+dh_bugfiles -pr-bioc-edger
+dh_install -pr-bioc-edger
+dh_link -pr-bioc-edger
+dh_installmime -pr-bioc-edger
+dh_installgsettings -pr-bioc-edger
+dh_strip -pr-bioc-edger
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dh_compress -pr-bioc-edger
+ cd debian/r-bioc-edger
+ chmod a-x usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save usr/share/doc/r-bioc-edger/changelog.Debian
+ gzip -9nf usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save usr/share/doc/r-bioc-edger/changelog.Debian
+ cd '/build/buildd-r-bioc-edger_3.2.3~dfsg-1-sparc-GfZJkK/r-bioc-edger-3.2.3~dfsg'
+dh_fixperms -pr-bioc-edger
+ find debian/r-bioc-edger -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-edger ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-edger/usr/share/doc -type f ! -regex 'debian/r-bioc-edger/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-edger/usr/share/man debian/r-bioc-edger/usr/man/ debian/r-bioc-edger/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/lib/perl5 debian/r-bioc-edger/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-edger/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
+dh_makeshlibs -pr-bioc-edger
+ rm -f debian/r-bioc-edger/DEBIAN/shlibs
+dh_installdeb -pr-bioc-edger
+dh_perl -pr-bioc-edger
+dh_shlibdeps -pr-bioc-edger
+ dpkg-shlibdeps -Tdebian/r-bioc-edger.substvars debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-edger/usr/lib/R/site-library/edgeR/libs/edgeR.so was not linked against libgfortran.so.3 (it uses none of the library's symbols)
+dh_gencontrol -pr-bioc-edger
+ echo misc:Depends= >> debian/r-bioc-edger.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-edger.substvars -Pdebian/r-bioc-edger
+dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
+ chmod 644 debian/r-bioc-edger/DEBIAN/control
+ chown 0:0 debian/r-bioc-edger/DEBIAN/control
+dh_md5sums -pr-bioc-edger
+ (cd debian/r-bioc-edger >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-edger/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-edger/DEBIAN/md5sums
+dh_builddeb -pr-bioc-edger -- -Z xz
+ dpkg-deb -Z xz --build debian/r-bioc-edger ..
+dpkg-deb: building package `r-bioc-edger' in `../r-bioc-edger_3.2.3~dfsg-1_sparc.deb'.
+ dpkg-genchanges -B -msparc Build Daemon (schroeder) <buildd_sparc-schroeder at buildd.debian.org> >../r-bioc-edger_3.2.3~dfsg-1_sparc.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-edger-3.2.3~dfsg
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20130517-1637
+
+r-bioc-edger_3.2.3~dfsg-1_sparc.changes:
+Format: 1.8
+Date: Fri, 17 May 2013 14:36:51 +0200
+Source: r-bioc-edger
+Binary: r-bioc-edger
+Architecture: sparc
+Version: 3.2.3~dfsg-1
+Distribution: sid
+Urgency: low
+Maintainer: sparc Build Daemon (schroeder) <buildd_sparc-schroeder at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
+Description:
+ r-bioc-edger - Empirical analysis of digital gene expression data in R
+Changes:
+ r-bioc-edger (3.2.3~dfsg-1) unstable; urgency=low
+ .
+ [ Charles Plessy ]
+ 74f1a5f Imported Upstream version 2.6.10~dfsg
+ d2d70ab Corrected VCS URLs.
+ 44c9d4e Regression tests for autopkgtest.
+ .
+ [ Andreas Tille ]
+ * Imported new upstream version 3.2.3~dfsg
+ * debian/control
+ - Added myself as Uploader
+ - Add ${shlibs:Depends} to ensure dependency from libc
+ - Removed DM-Upload-Allowed
+ - Standards-Version: 3.9.4 (no changes needed)
+ - Debhelper 9
+ - normalised format
+ - Removed unneeded Pre-Depends: dpkg (>= 1.15.6)
+ - Removed versioned dependency of r-base-dev
+ - Package is "Architecture: any" (rather than all)
+ * debian/source/format: Add explicit source format specification
+ * debian/copyright:
+ - Update Source location
+ - s/Removed/Files-Excluded/ to comply with the suggested format
+ that might be processed by uscan as alternative method to
+ filter-pristine-tar
+ - Add years to Copyright field
+ * debian/upstream: inst/CITATION asks for citing this more recent
+ paper that is now on top of debian/upstream
+ * debian/rules: remove executable flag from installed documentation
+Checksums-Sha1:
+ 6dad42685906dae583b05d2384f40253919314cc 1362024 r-bioc-edger_3.2.3~dfsg-1_sparc.deb
+Checksums-Sha256:
+ c0b7207d17cea36c6d5c3ba40de0b11f0f32c0c225c2e07dee0c1c87c54f9c07 1362024 r-bioc-edger_3.2.3~dfsg-1_sparc.deb
+Files:
+ 2622b9435cdf4bd7c16fae55b1d14ea7 1362024 gnu-r optional r-bioc-edger_3.2.3~dfsg-1_sparc.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-edger_3.2.3~dfsg-1_sparc.deb
+───────────────────────────────────
+
+ new debian package, version 2.0.
+ size 1362024 bytes: control archive= 1863 bytes.
+ 957 bytes, 17 lines control
+ 2932 bytes, 38 lines md5sums
+ Package: r-bioc-edger
+ Version: 3.2.3~dfsg-1
+ Architecture: sparc
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 2473
+ Depends: r-base-core (>= 3.0.1-1), r-bioc-limma, libblas3 | libblas.so.3 | libatlas3-base, libc6 (>= 2.6), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3), liblapack3 | liblapack.so.3 | libatlas3-base, libstdc++6 (>= 4.2.1)
+ Suggests: r-cran-mass
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
+ Description: Empirical analysis of digital gene expression data in R
+ Bioconductor package for differential expression analysis of whole
+ transcriptome sequencing (RNA-seq) and digital gene expression
+ profiles with biological replication. It uses empirical Bayes
+ estimation and exact tests based on the negative binomial
+ distribution. It is also useful for differential signal analysis with
+ other types of genome-scale count data.
+
+drwxr-xr-x root/root 0 2013-05-17 16:37 ./
+drwxr-xr-x root/root 0 2013-05-17 16:37 ./usr/
+drwxr-xr-x root/root 0 2013-05-17 16:37 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-17 16:37 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-17 16:37 ./usr/share/doc/r-bioc-edger/
+-rw-r--r-- root/root 1404 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/copyright
+drwxr-xr-x root/root 0 2013-05-17 16:37 ./usr/share/doc/r-bioc-edger/tests/
+-rw-r--r-- root/root 1392 2013-04-03 22:17 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R.gz
+-rw-r--r-- root/root 5706 2013-04-08 00:02 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save.gz
+-rw-r--r-- root/root 274 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.Debian
+-rw-r--r-- root/root 816 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/README.test
+-rw-r--r-- root/root 1384 2013-05-17 13:23 ./usr/share/doc/r-bioc-edger/changelog.Debian.gz
+drwxr-xr-x root/root 0 2013-05-17 16:36 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-17 16:36 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-17 16:37 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-17 16:37 ./usr/lib/R/site-library/edgeR/
+-rw-r--r-- root/root 6834 2013-05-17 16:37 ./usr/lib/R/site-library/edgeR/INDEX
+drwxr-xr-x root/root 0 2013-05-17 16:37 ./usr/lib/R/site-library/edgeR/html/
+-rw-r--r-- root/root 1179 2013-05-17 16:37 ./usr/lib/R/site-library/edgeR/html/R.css
+-rw-r--r-- root/root 22781 2013-05-17 16:37 ./usr/lib/R/site-library/edgeR/html/00Index.html
+-rw-r--r-- root/root 804 2013-05-17 16:36 ./usr/lib/R/site-library/edgeR/NAMESPACE
+drwxr-xr-x root/root 0 2013-05-17 16:37 ./usr/lib/R/site-library/edgeR/help/
+-rw-r--r-- root/root 3776 2013-05-17 16:37 ./usr/lib/R/site-library/edgeR/help/AnIndex
+-rw-r--r-- root/root 1767 2013-05-17 16:37 ./usr/lib/R/site-library/edgeR/help/edgeR.rdx
+-rw-r--r-- root/root 804 2013-05-17 16:37 ./usr/lib/R/site-library/edgeR/help/paths.rds
+-rw-r--r-- root/root 230780 2013-05-17 16:37 ./usr/lib/R/site-library/edgeR/help/edgeR.rdb
+-rw-r--r-- root/root 1342 2013-05-17 16:37 ./usr/lib/R/site-library/edgeR/help/aliases.rds
+drwxr-xr-x root/root 0 2013-05-17 16:37 ./usr/lib/R/site-library/edgeR/doc/
+-rw-r--r-- root/root 49354 2013-05-17 16:36 ./usr/lib/R/site-library/edgeR/doc/edgeR.pdf
+-rw-r--r-- root/root 879697 2013-05-17 16:36 ./usr/lib/R/site-library/edgeR/doc/edgeRUsersGuide.pdf
+-rw-r--r-- root/root 691 2013-05-17 16:36 ./usr/lib/R/site-library/edgeR/doc/index.html
+-rw-r--r-- root/root 1826 2013-05-17 16:36 ./usr/lib/R/site-library/edgeR/doc/edgeR.Rnw
+drwxr-xr-x root/root 0 2013-05-17 16:37 ./usr/lib/R/site-library/edgeR/Meta/
+-rw-r--r-- root/root 3639 2013-05-17 16:37 ./usr/lib/R/site-library/edgeR/Meta/Rd.rds
+-rw-r--r-- root/root 3475 2013-05-17 16:37 ./usr/lib/R/site-library/edgeR/Meta/hsearch.rds
+-rw-r--r-- root/root 228 2013-05-17 16:37 ./usr/lib/R/site-library/edgeR/Meta/vignette.rds
+-rw-r--r-- root/root 368 2013-05-17 16:37 ./usr/lib/R/site-library/edgeR/Meta/nsInfo.rds
+-rw-r--r-- root/root 1640 2013-05-17 16:37 ./usr/lib/R/site-library/edgeR/Meta/links.rds
+-rw-r--r-- root/root 161 2013-05-17 16:37 ./usr/lib/R/site-library/edgeR/Meta/data.rds
+-rw-r--r-- root/root 991 2013-05-17 16:36 ./usr/lib/R/site-library/edgeR/Meta/package.rds
+drwxr-xr-x root/root 0 2013-05-17 16:36 ./usr/lib/R/site-library/edgeR/R/
+-rw-r--r-- root/root 2294 2013-05-17 16:36 ./usr/lib/R/site-library/edgeR/R/edgeR.rdx
+-rw-r--r-- root/root 1056 2013-05-17 16:36 ./usr/lib/R/site-library/edgeR/R/edgeR
+-rw-r--r-- root/root 116076 2013-05-17 16:36 ./usr/lib/R/site-library/edgeR/R/edgeR.rdb
+-rw-r--r-- root/root 2057 2013-05-17 16:36 ./usr/lib/R/site-library/edgeR/CITATION
+drwxr-xr-x root/root 0 2013-05-17 16:37 ./usr/lib/R/site-library/edgeR/libs/
+-rw-r--r-- root/root 39656 2013-05-17 16:37 ./usr/lib/R/site-library/edgeR/libs/edgeR.so
+drwxr-xr-x root/root 0 2013-05-17 16:36 ./usr/lib/R/site-library/edgeR/data/
+-rw-r--r-- root/root 228426 2013-05-17 16:36 ./usr/lib/R/site-library/edgeR/data/NC2.txt
+-rw-r--r-- root/root 248500 2013-05-17 16:36 ./usr/lib/R/site-library/edgeR/data/NC1.txt
+-rw-r--r-- root/root 263571 2013-05-17 16:36 ./usr/lib/R/site-library/edgeR/data/Tu98.txt
+-rw-r--r-- root/root 318545 2013-05-17 16:36 ./usr/lib/R/site-library/edgeR/data/Tu102.txt
+-rw-r--r-- root/root 19 2013-05-17 16:36 ./usr/lib/R/site-library/edgeR/data/datalist
+-rw-r--r-- root/root 13746 2013-05-17 16:36 ./usr/lib/R/site-library/edgeR/NEWS.Rd
+-rw-r--r-- root/root 1112 2013-05-17 16:36 ./usr/lib/R/site-library/edgeR/DESCRIPTION
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-sparc-sbuild-3f9096b7-baf3-436c-942c-3a4a35084df7/build/buildd-r-bioc-edger_3.2.3~dfsg-1-sparc-GfZJkK
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: sparc
+Build-Space: 6856
+Build-Time: 76
+Distribution: sid
+Install-Time: 248
+Job: r-bioc-edger_3.2.3~dfsg-1
+Package: r-bioc-edger
+Package-Time: 404
+Source-Version: 3.2.3~dfsg-1
+Space: 6856
+Status: successful
+Version: 3.2.3~dfsg-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20130517-1637
+Build needed 00:06:44, 6856k disc space
+Signature with key 'B3666332' requested:
--
Alioth's /git/debian-med/git-commit-notice on /srv/git.debian.org/git/debian-med/r-bioc-edger.git
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