[med-svn] r14405 - trunk/packages/paml/trunk/debian/patches

[Andreas Tille]

Author: tille
Date: 2013-08-08 20:17:48 +0000 (Thu, 08 Aug 2013)
New Revision: 14405

Modified:
   trunk/packages/paml/trunk/debian/patches/hardening.patch
   trunk/packages/paml/trunk/debian/patches/makefile.patch
Log:
Refreshed patches


Modified: trunk/packages/paml/trunk/debian/patches/hardening.patch
===================================================================
--- trunk/packages/paml/trunk/debian/patches/hardening.patch	2013-08-08 20:16:01 UTC (rev 14404)
+++ trunk/packages/paml/trunk/debian/patches/hardening.patch	2013-08-08 20:17:48 UTC (rev 14405)
@@ -2,8 +2,8 @@
 Author: Andreas Tille <tille at debian.org>
 Date: Tue, 15 May 2012 11:10:59 +0200
 
---- paml4.5.orig/src/Makefile
-+++ paml4.5/src/Makefile
+--- a/src/Makefile
++++ b/src/Makefile
 @@ -1,7 +1,7 @@
  PRGS =  baseml codeml basemlg mcmctree pamp evolver yn00 chi2 
  CC = cc # cc, gcc, cl
@@ -13,7 +13,7 @@
  
  #MAC OSX G5:
  #CFLAGS = -mcpu=G5 -O4 -funroll-loops -fomit-frame-pointer -finline-functions
-@@ -20,21 +20,21 @@
+@@ -20,21 +20,21 @@ LIBS = -lm # -lM
  all : $(PRGS)
  
  baseml : baseml.c tools.c treesub.c treespace.c paml.h 

Modified: trunk/packages/paml/trunk/debian/patches/makefile.patch
===================================================================
--- trunk/packages/paml/trunk/debian/patches/makefile.patch	2013-08-08 20:16:01 UTC (rev 14404)
+++ trunk/packages/paml/trunk/debian/patches/makefile.patch	2013-08-08 20:17:48 UTC (rev 14405)
@@ -3,7 +3,7 @@
 Date: Tue, 07 Sep 2010 21:09:02 +0200
 
 --- /dev/null
-+++ paml4.5/Makefile
++++ b/Makefile
 @@ -0,0 +1,9 @@
 +
 +all install build:
@@ -14,9 +14,9 @@
 +	echo "Cleaning binaries"
 +	rm -f $(find src -name "*.c" | sed -e 's/.c$//')
 +
---- paml4.5.orig/src/Makefile
-+++ paml4.5/src/Makefile
-@@ -35,3 +35,11 @@
+--- a/src/Makefile
++++ b/src/Makefile
+@@ -35,3 +35,11 @@ yn00: yn00.c tools.c paml.h
  	$(CC) $(CFLAGS) -o $@ yn00.c tools.c $(LIBS)
  chi2 : chi2.c
  	$(CC) $(CFLAGS) -o $@ chi2.c $(LIBS)