[med-svn] [pysam] 06/13: Merge tag 'upstream/0.7.3'

[Charles Plessy]

This is an automated email from the git hooks/post-receive script.

plessy pushed a commit to branch master
in repository pysam.

commit f48b0aa0992a3cbf75075afea27dc7df970847cc
Merge: 4b62e38 14c14ac
Author: Charles Plessy <plessy at debian.org>
Date:   Fri Aug 9 18:34:33 2013 +0900

    Merge tag 'upstream/0.7.3'
    
    Upstream version 0.7.3
    
    # gpg: Signature made Fri 09 Aug 2013 18:34:33 JST using RSA key ID 2295D502
    # gpg: Good signature from "Charles Plessy <plessy at debian.org>"

 MANIFEST.in                  |    5 +-
 PKG-INFO                     |    6 +-
 distribute_setup.py          |  107 +-
 pysam.egg-info/PKG-INFO      |    6 +-
 pysam.egg-info/SOURCES.txt   |    8 +
 pysam.egg-info/requires.txt  |    2 +-
 pysam.egg-info/top_level.txt |    4 -
 pysam/__init__.py            |    5 +-
 pysam/alternatives.py        |   82 +
 pysam/ctabix.c               | 3822 +++++++--------
 pysam/ctabix.pyx             |    2 +-
 pysam/cvcf.c                 |10447 +++++++++++++++++++++++-------------------
 pysam/cvcf.pyx               |    4 +-
 pysam/version.py             |    2 +-
 setup.py                     |   36 +-
 tabix/bedidx.c               |  156 +
 tabix/bgzf.c                 |  555 +++
 tabix/bgzip.c                |  206 +
 tabix/index.c                |  967 ++++
 tabix/knetfile.c             |  632 +++
 tabix/kstring.c              |  165 +
 tests/example_btag.bam       |  Bin 0 -> 771 bytes
 tests/pysam_test.py          |   10 +
 23 files changed, 10486 insertions(+), 6743 deletions(-)

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