[med-svn] r14418 - trunk/packages/staden-io-lib/trunk/debian

[Charles Plessy]

Author: plessy
Date: 2013-08-10 02:49:40 +0000 (Sat, 10 Aug 2013)
New Revision: 14418

Modified:
   trunk/packages/staden-io-lib/trunk/debian/libstaden-read1.symbols
Log:
Updated symbols with the patch from dpkg-gensymbols.


Modified: trunk/packages/staden-io-lib/trunk/debian/libstaden-read1.symbols
===================================================================
--- trunk/packages/staden-io-lib/trunk/debian/libstaden-read1.symbols	2013-08-10 01:59:11 UTC (rev 14417)
+++ trunk/packages/staden-io-lib/trunk/debian/libstaden-read1.symbols	2013-08-10 02:49:40 UTC (rev 14418)
@@ -36,6 +36,7 @@
  MD5_Update at Base 1.13.1
  abi_reset_data_counts at Base 1.12.4
  abi_set_data_counts at Base 1.12.4
+ bam_add_raw at Base 1.13.2-1
  bam_aux_A at Base 1.13.1
  bam_aux_Z at Base 1.13.1
  bam_aux_add at Base 1.13.1
@@ -50,11 +51,15 @@
  bam_aux_size_vec at Base 1.13.1
  bam_close at Base 1.13.1
  bam_construct_seq at Base 1.13.1
- bam_get_line at Base 1.13.1
+ bam_copy at Base 1.13.2-1
+ bam_dup at Base 1.13.2-1
+#MISSING: 1.13.2-1# bam_get_line at Base 1.13.1
  bam_get_seq at Base 1.13.1
  bam_next_seq at Base 1.13.1
  bam_open at Base 1.13.1
  bam_put_seq at Base 1.13.1
+ bam_set_option at Base 1.13.2-1
+ bam_set_voption at Base 1.13.2-1
  bam_write_header at Base 1.13.1
  be_read_int_1 at Base 1.12.4
  be_read_int_2 at Base 1.12.4
@@ -64,6 +69,8 @@
  be_write_int_2 at Base 1.12.4
  be_write_int_4 at Base 1.12.4
  be_write_int_8 at Base 1.12.4
+ bgzf_decode_thread at Base 1.13.2-1
+ bgzf_encode_thread at Base 1.13.2-1
  bit_reverse at Base 1.12.4
  block_create at Base 1.12.4
  block_destroy at Base 1.12.4
@@ -80,9 +87,11 @@
  compressed_file_exists at Base 1.12.4
  conf2str at Base 1.12.4
  construct_trace_name at Base 1.12.4
- cram_beta_decode at Base 1.13.1
+#MISSING: 1.13.2-1# cram_beta_decode at Base 1.13.1
+ cram_beta_decode_char at Base 1.13.2-1
  cram_beta_decode_free at Base 1.13.1
  cram_beta_decode_init at Base 1.13.1
+ cram_beta_decode_int at Base 1.13.2-1
  cram_beta_encode_char at Base 1.13.1
  cram_beta_encode_free at Base 1.13.1
  cram_beta_encode_init at Base 1.13.1
@@ -111,6 +120,8 @@
  cram_decode_compression_header at Base 1.13.1
  cram_decode_slice at Base 1.13.1
  cram_decode_slice_header at Base 1.13.1
+ cram_decode_slice_mt at Base 1.13.2-1
+ cram_decode_slice_thread at Base 1.13.2-1
  cram_decoder_init at Base 1.13.1
  cram_encode_compression_header at Base 1.13.1
  cram_encode_container at Base 1.13.1
@@ -129,6 +140,8 @@
  cram_external_encode_store at Base 1.13.1
  cram_flush at Base 1.13.1
  cram_flush_container at Base 1.13.1
+ cram_flush_container_mt at Base 1.13.2-1
+ cram_flush_thread at Base 1.13.2-1
  cram_free_block at Base 1.13.1
  cram_free_compression_header at Base 1.13.1
  cram_free_container at Base 1.13.1
@@ -170,6 +183,9 @@
  cram_read_container at Base 1.13.1
  cram_read_file_def at Base 1.13.1
  cram_read_slice at Base 1.13.1
+ cram_ref_decr at Base 1.13.2-1
+ cram_ref_incr at Base 1.13.2-1
+ cram_ref_load at Base 1.13.2-1
  cram_seek at Base 1.13.1
  cram_seek_to_refpos at Base 1.13.1
  cram_set_option at Base 1.13.1
@@ -445,6 +461,7 @@
  recorrelate2 at Base 1.12.4
  recorrelate4 at Base 1.12.4
  refs2id at Base 1.13.1
+ refs_free at Base 1.13.2-1
  remove_extension at Base 1.12.4
  remove_file at Base 1.12.4
  restore_codes at Base 1.12.4
@@ -454,6 +471,7 @@
  sam_hdr_add at Base 1.13.1
  sam_hdr_add_PG at Base 1.13.1
  sam_hdr_add_lines at Base 1.13.1
+ sam_hdr_decr_ref at Base 1.13.2-1
  sam_hdr_dump at Base 1.13.1
  sam_hdr_dup at Base 1.13.1
  sam_hdr_find at Base 1.13.1
@@ -461,6 +479,7 @@
  sam_hdr_find_line at Base 1.13.1
  sam_hdr_find_rg at Base 1.13.1
  sam_hdr_free at Base 1.13.1
+ sam_hdr_incr_ref at Base 1.13.2-1
  sam_hdr_length at Base 1.13.1
  sam_hdr_link_pg at Base 1.13.1
  sam_hdr_name2ref at Base 1.13.1
@@ -481,6 +500,8 @@
  scram_get_header at Base 1.13.1
  scram_get_refs at Base 1.13.1
  scram_get_seq at Base 1.13.1
+ scram_input_bam_block at Base 1.13.2-1
+ scram_line at Base 1.13.2-1
  scram_next_seq at Base 1.13.1
  scram_open at Base 1.13.1
  scram_put_seq at Base 1.13.1
@@ -545,6 +566,19 @@
  string_pool_create at Base 1.13.1
  string_pool_destroy at Base 1.13.1
  stringify_argv at Base 1.13.1
+ t_pool_delete_result at Base 1.13.2-1
+ t_pool_destroy at Base 1.13.2-1
+ t_pool_dispatch2 at Base 1.13.2-1
+ t_pool_dispatch at Base 1.13.2-1
+ t_pool_flush at Base 1.13.2-1
+ t_pool_init at Base 1.13.2-1
+ t_pool_next_result at Base 1.13.2-1
+ t_pool_next_result_wait at Base 1.13.2-1
+ t_pool_results_queue_empty at Base 1.13.2-1
+ t_pool_results_queue_len at Base 1.13.2-1
+ t_pool_results_queue_sz at Base 1.13.2-1
+ t_results_queue_destroy at Base 1.13.2-1
+ t_results_queue_init at Base 1.13.2-1
  tokenise_search_path at Base 1.13.1
  trace_type_int2str at Base 1.12.4
  trace_type_str2int at Base 1.12.4