[med-svn] r14471 - in trunk/packages/R: . r-cran-fastcluster r-cran-fastcluster/trunk r-cran-fastcluster/trunk/debian r-cran-fastcluster/trunk/debian/source

Andreas Tille tille at alioth.debian.org
Wed Aug 21 15:03:29 UTC 2013 

Author: tille
Date: 2013-08-21 15:03:29 +0000 (Wed, 21 Aug 2013)
New Revision: 14471

Added:
   trunk/packages/R/r-cran-fastcluster/
   trunk/packages/R/r-cran-fastcluster/trunk/
   trunk/packages/R/r-cran-fastcluster/trunk/debian/
   trunk/packages/R/r-cran-fastcluster/trunk/debian/README.Debian
   trunk/packages/R/r-cran-fastcluster/trunk/debian/README.test
   trunk/packages/R/r-cran-fastcluster/trunk/debian/changelog
   trunk/packages/R/r-cran-fastcluster/trunk/debian/compat
   trunk/packages/R/r-cran-fastcluster/trunk/debian/control
   trunk/packages/R/r-cran-fastcluster/trunk/debian/copyright
   trunk/packages/R/r-cran-fastcluster/trunk/debian/docs
   trunk/packages/R/r-cran-fastcluster/trunk/debian/links
   trunk/packages/R/r-cran-fastcluster/trunk/debian/rules
   trunk/packages/R/r-cran-fastcluster/trunk/debian/source/
   trunk/packages/R/r-cran-fastcluster/trunk/debian/source/format
   trunk/packages/R/r-cran-fastcluster/trunk/debian/watch
Log:
Adding some initial packaging for r-cran-fastcluster as one of the missing preconditions for r-bioc-cummerbund


Added: trunk/packages/R/r-cran-fastcluster/trunk/debian/README.Debian
===================================================================
--- trunk/packages/R/r-cran-fastcluster/trunk/debian/README.Debian	                        (rev 0)
+++ trunk/packages/R/r-cran-fastcluster/trunk/debian/README.Debian	2013-08-21 15:03:29 UTC (rev 14471)
@@ -0,0 +1,10 @@
+r-cran-fastcluster for Debian
+=============================
+
+The source code also contains a Python module for fastcluster which is
+not yet regarded inside the packaging.  Feel free to contact us using
+reportbug (severity wishlist) if you would like to use this module as
+well.
+
+ -- Andreas Tille <tille at debian.org>  Wed, 21 Aug 2013 16:50:16 +0200
+

Added: trunk/packages/R/r-cran-fastcluster/trunk/debian/README.test
===================================================================
--- trunk/packages/R/r-cran-fastcluster/trunk/debian/README.test	                        (rev 0)
+++ trunk/packages/R/r-cran-fastcluster/trunk/debian/README.test	2013-08-21 15:03:29 UTC (rev 14471)
@@ -0,0 +1,5 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by loading it into R with the command
+‘library(flashClust)’ in order to confirm its integrity.

Added: trunk/packages/R/r-cran-fastcluster/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-fastcluster/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/R/r-cran-fastcluster/trunk/debian/changelog	2013-08-21 15:03:29 UTC (rev 14471)
@@ -0,0 +1,6 @@
+r-cran-fastcluster (1.1.11-1) UNRELEASED; urgency=low
+
+  * Initial release (closes: #???)
+
+ -- Andreas Tille <tille at debian.org>  Wed, 21 Aug 2013 16:50:16 +0200
+

Added: trunk/packages/R/r-cran-fastcluster/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-cran-fastcluster/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/R/r-cran-fastcluster/trunk/debian/compat	2013-08-21 15:03:29 UTC (rev 14471)
@@ -0,0 +1 @@
+9

Added: trunk/packages/R/r-cran-fastcluster/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-fastcluster/trunk/debian/control	                        (rev 0)
+++ trunk/packages/R/r-cran-fastcluster/trunk/debian/control	2013-08-21 15:03:29 UTC (rev 14471)
@@ -0,0 +1,28 @@
+Source: r-cran-fastcluster
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               cdbs,
+               r-base-dev
+Standards-Version: 3.9.4
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-fastcluster/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-fastcluster/trunk/
+Homepage: http://cran.r-project.org/web/packages/fastcluster/index.html
+
+Package: r-cran-fastcluster
+Architecture: any
+Depends: ${shlibs:Depends},
+         ${R:Depends}
+Description: Fast hierarchical clustering routines for GNU R
+ Fastcluster implements fast hierarchical, agglomerative clustering
+ routines. Part of the functionality is designed as drop-in replacement
+ for existing routines: “linkage” in the SciPy package
+ “scipy.cluster.hierarchy”, “hclust” in R's “stats” package, and the
+ “flashClust” package. It provides the same functionality with the
+ benefit of a much faster implementation. Moreover, there are
+ memory-saving routines for clustering of vector data, which go beyond
+ what the existing packages provide. For information on how to install
+ the Python files, see the file INSTALL in the source distribution.
+

Added: trunk/packages/R/r-cran-fastcluster/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-fastcluster/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/R/r-cran-fastcluster/trunk/debian/copyright	2013-08-21 15:03:29 UTC (rev 14471)
@@ -0,0 +1,32 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: fastcluster
+Upstream-Contact: Daniel Müllner <muellner at math.stanford.edu>
+Source: http://cran.r-project.org/src/contrib/
+
+Files: *
+Copyright: 2008-2013 Daniel Müllner <muellner at math.stanford.edu>
+License: GPL2+
+
+License: GPL2+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ .
+ On Debian systems, the complete text of the GNU Public
+ License can be found in `/usr/share/common-licenses/GPL'.
+Comment: These files can also be used under FreeBSD license
+ http://www.freebsd.org/copyright/freebsd-license.html
+
+Files: debian/*
+Copyright: 2013 Andreas Tille <tille at debian.org>
+License: GPL2+
+

Added: trunk/packages/R/r-cran-fastcluster/trunk/debian/docs
===================================================================
--- trunk/packages/R/r-cran-fastcluster/trunk/debian/docs	                        (rev 0)
+++ trunk/packages/R/r-cran-fastcluster/trunk/debian/docs	2013-08-21 15:03:29 UTC (rev 14471)
@@ -0,0 +1 @@
+debian/README.test

Added: trunk/packages/R/r-cran-fastcluster/trunk/debian/links
===================================================================
--- trunk/packages/R/r-cran-fastcluster/trunk/debian/links	                        (rev 0)
+++ trunk/packages/R/r-cran-fastcluster/trunk/debian/links	2013-08-21 15:03:29 UTC (rev 14471)
@@ -0,0 +1,2 @@
+usr/share/doc/r-cran-epi usr/lib/R/site-library/Epi/doc
+

Added: trunk/packages/R/r-cran-fastcluster/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-fastcluster/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/R/r-cran-fastcluster/trunk/debian/rules	2013-08-21 15:03:29 UTC (rev 14471)
@@ -0,0 +1,4 @@
+#!/usr/bin/make -f
+# 							-*- makefile -*-
+
+include /usr/share/R/debian/r-cran.mk


Property changes on: trunk/packages/R/r-cran-fastcluster/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/R/r-cran-fastcluster/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-cran-fastcluster/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/R/r-cran-fastcluster/trunk/debian/source/format	2013-08-21 15:03:29 UTC (rev 14471)
@@ -0,0 +1 @@
+3.0 (quilt)

Added: trunk/packages/R/r-cran-fastcluster/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-cran-fastcluster/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/R/r-cran-fastcluster/trunk/debian/watch	2013-08-21 15:03:29 UTC (rev 14471)
@@ -0,0 +1,2 @@
+version=3
+http://cran.r-project.org/src/contrib/fastcluster_([-\d.]*)\.tar\.gz

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