[med-svn] r14486 - trunk/packages/R/r-bioc-rtracklayer/trunk/debian

[Andreas Tille]

Author: tille
Date: 2013-08-22 14:46:32 +0000 (Thu, 22 Aug 2013)
New Revision: 14486

Modified:
   trunk/packages/R/r-bioc-rtracklayer/trunk/debian/changelog
   trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control
Log:
Add existing Build-Depends and mention the missing ones in changelog todo list


Modified: trunk/packages/R/r-bioc-rtracklayer/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-rtracklayer/trunk/debian/changelog	2013-08-22 14:21:39 UTC (rev 14485)
+++ trunk/packages/R/r-bioc-rtracklayer/trunk/debian/changelog	2013-08-22 14:46:32 UTC (rev 14486)
@@ -1,5 +1,15 @@
 r-bioc-rtracklayer (1.20.4-1) UNRELEASED; urgency=low
 
   * Initial release (closes: #???).
+    The following preconditions are needed but missing in Debian
+      GenomicRanges: http://www.bioconductor.org/packages/release/bioc/html/GenomicRanges.html
+      IRanges:       http://bioconductor.org/packages/2.3/bioc/html/IRanges.html
+      Biostrings:    http://www.bioconductor.org/packages/2.2/bioc/html/Biostrings.html
+      BSgenome:      http://bioconductor.org/packages/2.4/bioc/html/BSgenome.html
+      zlibbioc:      http://bioconductor.org/packages/2.12/bioc/html/zlibbioc.html
+            Remark:  This should *really* be avoided as the homepage confirms that it
+                     should not be needed on sites with zlib installed
+      RCurl:         http://cran.r-project.org/web/packages/RCurl/index.html
+      Rsamtools:     http://www.bioconductor.org/packages/release/bioc/html/Rsamtools.html
 
  -- Andreas Tille <tille at debian.org>  Thu, 22 Aug 2013 14:01:29 +0200

Modified: trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control	2013-08-22 14:21:39 UTC (rev 14485)
+++ trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control	2013-08-22 14:46:32 UTC (rev 14486)
@@ -5,7 +5,9 @@
 Priority: optional
 Build-Depends: debhelper (>= 9),
                cdbs,
-               r-base-dev
+               r-base-dev,
+               r-cran-xml,
+               r-bioc-biocgenerics
 Standards-Version: 3.9.4
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-rtracklayer/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-rtracklayer/trunk/
@@ -14,7 +16,9 @@
 Package: r-bioc-rtracklayer
 Architecture: all
 Depends: ${R:Depends},
-         ${misc:Depends}
+         ${misc:Depends},
+         r-cran-xml,
+         r-bioc-biocgenerics
 Description: GNU R interface to genome browsers and their annotation tracks
  Extensible framework for interacting with multiple genome browsers
  (currently UCSC built-in) and manipulating annotation tracks in various