[med-svn] r15378 - in trunk/packages/R/r-bioc-shortread/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2013-12-01 22:44:53 +0000 (Sun, 01 Dec 2013)
New Revision: 15378

Modified:
   trunk/packages/R/r-bioc-shortread/trunk/debian/changelog
   trunk/packages/R/r-bioc-shortread/trunk/debian/control
   trunk/packages/R/r-bioc-shortread/trunk/debian/patches/use_debian_packaged_zlib.patch
Log:
Uploaded to new


Modified: trunk/packages/R/r-bioc-shortread/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-shortread/trunk/debian/changelog	2013-12-01 21:13:16 UTC (rev 15377)
+++ trunk/packages/R/r-bioc-shortread/trunk/debian/changelog	2013-12-01 22:44:53 UTC (rev 15378)
@@ -1,5 +1,5 @@
-r-bioc-shortread (1.20.0-1) UNRELEASED; urgency=low
+r-bioc-shortread (1.20.0-1) unstable; urgency=low
 
-  * Initial release (closes: #???)
+  * Initial release (closes: #731085)
 
  -- Andreas Tille <tille at debian.org>  Mon, 04 Nov 2013 17:24:35 +0100

Modified: trunk/packages/R/r-bioc-shortread/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-shortread/trunk/debian/control	2013-12-01 21:13:16 UTC (rev 15377)
+++ trunk/packages/R/r-bioc-shortread/trunk/debian/control	2013-12-01 22:44:53 UTC (rev 15378)
@@ -12,23 +12,26 @@
                r-bioc-genomicranges,
                r-bioc-iranges,
                r-bioc-biostrings,
+               r-bioc-rsamtools,
                r-bioc-xvector,
-               r-cran-hwriter
+               r-cran-hwriter,
 Standards-Version: 3.9.5
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-shortread/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-shortread/trunk/
 Homepage: http://www.bioconductor.org/packages/release/bioc/html/ShortRead.html
 
 Package: r-bioc-shortread
-Architecture: all
+Architecture: any
 Depends: ${R:Depends},
-         ${misc:Depends}
+         ${misc:Depends},
+         ${shlibs:Depends},
          r-cran-latticeextra,
          r-bioc-biobase,
          r-bioc-biocgenerics,
          r-bioc-genomicranges,
          r-bioc-iranges,
          r-bioc-biostrings,
+         r-bioc-rsamtools,
          r-bioc-xvector,
          r-cran-hwriter
 Description: GNU R classes and methods for high-throughput short-read sequencing data

Modified: trunk/packages/R/r-bioc-shortread/trunk/debian/patches/use_debian_packaged_zlib.patch
===================================================================
--- trunk/packages/R/r-bioc-shortread/trunk/debian/patches/use_debian_packaged_zlib.patch	2013-12-01 21:13:16 UTC (rev 15377)
+++ trunk/packages/R/r-bioc-shortread/trunk/debian/patches/use_debian_packaged_zlib.patch	2013-12-01 22:44:53 UTC (rev 15378)
@@ -1,3 +1,9 @@
+/home/tillea/debian-maintain/repack/r-bioc-rsamtools/debian/patches/use_debian_packaged_zlib.patch                                                                   827/874                94%
+Author: Andreas Tille <tille at debian.org>
+LastChanged: Sun, 01 Dec 2013 09:45:58 +0100
+Description: If the systems includes zlib natively there is no point in
+ requiring the import of zlibbioc
+
 --- a/DESCRIPTION
 +++ b/DESCRIPTION
 @@ -13,7 +13,7 @@ LazyLoad: yes