[med-svn] r15409 - in trunk/packages/R: . r-bioc-pasillabamsubset r-bioc-pasillabamsubset/trunk r-bioc-pasillabamsubset/trunk/debian r-bioc-pasillabamsubset/trunk/debian/source

Tue Dec 3 13:16:13 UTC 2013

Author: tille
Date: 2013-12-03 13:16:13 +0000 (Tue, 03 Dec 2013)
New Revision: 15409

Added:
   trunk/packages/R/r-bioc-pasillabamsubset/
   trunk/packages/R/r-bioc-pasillabamsubset/trunk/
   trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/
   trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/README.Debian
   trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/changelog
   trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/compat
   trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/control
   trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/copyright
   trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/rules
   trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/source/
   trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/source/format
   trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/watch
Log:
The only reason for this package is to run the testsuite for r-bioc-rsamtools.  Currently it is not intended to upload the package to the Debian mirror.


Added: trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/README.Debian
===================================================================

--- trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/README.Debian	                        (rev 0)
+++ trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/README.Debian	2013-12-03 13:16:13 UTC (rev 15409)
@@ -0,0 +1,7 @@
+pasillaBamSubset for Debian
+---------------------------
+
+The only reason for this package is to run the testsuite for
+r-bioc-rsamtools.  Currently it is not intended to upload the
+package to the Debian mirror.
+

Added: trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/changelog	2013-12-03 13:16:13 UTC (rev 15409)
@@ -0,0 +1,6 @@
+r-bioc-pasillabamsubset (0.0.8-1) UNRELEASED; urgency=low
+
+  * Initial release (closes: #???)
+    Currently no attempt to release (see README.Debian)
+
+ -- Andreas Tille <tille at debian.org>  Tue, 03 Dec 2013 13:56:27 +0100

Added: trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/compat	2013-12-03 13:16:13 UTC (rev 15409)
@@ -0,0 +1 @@
+9

Added: trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/control	                        (rev 0)
+++ trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/control	2013-12-03 13:16:13 UTC (rev 15409)
@@ -0,0 +1,28 @@
+Source: r-bioc-pasillabamsubset
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               cdbs,
+               r-base-dev
+Standards-Version: 3.9.5
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-pasillabamsubset/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-pasillabamsubset/trunk/
+Homepage: http://bioconductor.org/packages/release/data/experiment/html/pasillaBamSubset.html
+
+Package: r-bioc-pasillabamsubset
+Architecture: any
+Depends: ${R:Depends},
+         ${misc:Depends},
+         ${shlibs:Depends}
+Description: Subset of BAM files from "Pasilla" experiment
+ Subset of BAM files untreated1.bam (single-end reads) and
+ untreated3.bam (paired-end reads) from "Pasilla" experiment (Pasilla
+ knock-down by Brooks et al., Genome Research 2011). See the vignette in
+ the pasilla data package for how BAM files untreated1.bam and
+ untreated3.bam were obtained from the RNA-Seq read sequence data that is
+ provided by NCBI Gene Expression Omnibus under accession numbers
+ GSM461176 to GSM461181. Also contains the DNA sequence for fly
+ chromosome 4 to which the reads can be mapped.
+

Added: trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/copyright	2013-12-03 13:16:13 UTC (rev 15409)
@@ -0,0 +1,17 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: pasillaBamSubset
+Upstream-Contact: H. Pages <hpages at fhcrc.org>
+Source: http://bioconductor.org/packages/release/data/experiment/html/pasillaBamSubset.html
+
+Files: *
+Copyright: © 2006-2013 H. Pages and P. Aboyoun
+License: LGPL-2.1+
+
+Files: debian/*
+Copyright: 2013 Andreas Tille <tille at debian.org>
+License: LGPL-2.1+
+
+License: LGPL-2.1+
+ On Debian GNU/Linux system you can find the complete text of the
+ LGPL license in '/usr/share/common-licenses/LGPL-2.1'.
+

Added: trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/rules	2013-12-03 13:16:13 UTC (rev 15409)
@@ -0,0 +1,4 @@
+#!/usr/bin/make -f
+
+debRreposname=bioc
+include /usr/share/R/debian/r-cran.mk


Property changes on: trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/source/format	2013-12-03 13:16:13 UTC (rev 15409)
@@ -0,0 +1 @@
+3.0 (quilt)

Added: trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/watch	2013-12-03 13:16:13 UTC (rev 15409)
@@ -0,0 +1,3 @@
+version=3
+opts=downloadurlmangle=s/\.\./packages\/release\/data\/experiment/ \
+ http://bioconductor.org/packages/release/data/experiment/html/pasillaBamSubset.html .*/pasillaBamSubset_([\d\.]+).tar.gz


