[med-svn] [snp-sites] 03/04: Merge tag 'upstream/1'

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository snp-sites.

commit c32ca4319088f5756d8a465426fe14faba1dd9e7
Merge: 6c0f64b 398e7a2
Author: Andreas Tille <tille at debian.org>
Date:   Thu Dec 5 17:34:50 2013 +0100

    Merge tag 'upstream/1'
    
    Upstream version 1

 .travis.yml                                        |     8 +
 AUTHORS                                            |     1 +
 INSTALL                                            |    15 +
 LICENSE                                            |   339 +
 Makefile.am                                        |     1 +
 Makefile.in                                        |   761 +
 README.md                                          |    40 +
 VERSION                                            |     1 +
 aclocal.m4                                         |  9559 ++++++++++
 autom4te.cache/output.0                            | 18297 +++++++++++++++++++
 autom4te.cache/output.1                            | 18293 ++++++++++++++++++
 autom4te.cache/requests                            |   291 +
 autom4te.cache/traces.0                            |  2480 +++
 autom4te.cache/traces.1                            |   589 +
 config.guess                                       |  1530 ++
 config.h.in                                        |    68 +
 config.sub                                         |  1782 ++
 configure                                          | 18293 ++++++++++++++++++
 configure.ac                                       |    14 +
 depcomp                                            |   708 +
 install-sh                                         |   527 +
 ltmain.sh                                          |  9661 ++++++++++
 m4/libtool.m4                                      |  7983 ++++++++
 m4/ltoptions.m4                                    |   384 +
 m4/ltsugar.m4                                      |   123 +
 m4/ltversion.m4                                    |    23 +
 m4/lt~obsolete.m4                                  |    98 +
 missing                                            |   331 +
 src/Makefile.am                                    |    22 +
 src/Makefile.in                                    |   833 +
 src/alignment_file.c                               |   280 +
 src/alignment_file.h                               |    41 +
 src/fasta_of_snp_sites.c                           |    49 +
 src/fasta_of_snp_sites.h                           |    26 +
 src/kseq.h                                         |   235 +
 src/main.c                                         |    88 +
 src/parse_phylip.c                                 |    51 +
 src/parse_phylip.h                                 |    33 +
 src/phylib_of_snp_sites.c                          |    55 +
 src/phylib_of_snp_sites.h                          |    27 +
 src/snp_sites.c                                    |   235 +
 src/snp_sites.h                                    |    33 +
 src/string_cat.c                                   |    42 +
 src/string_cat.h                                   |    28 +
 src/vcf.c                                          |   178 +
 src/vcf.h                                          |    33 +
 tests/check_snp_sites.c                            |   260 +
 tests/check_snp_sites.h                            |    27 +
 .../alignment_file_multiple_lines_per_sequence.aln |   226 +
 .../data/alignment_file_one_line_per_sequence.aln  |   218 +
 .../alignment_file_one_line_per_sequence.aln.gz    |   Bin 0 -> 3447 bytes
 ...alignment_file_one_line_per_sequence.aln.phylip |   110 +
 ...nt_file_one_line_per_sequence.aln.snp_sites.aln |   218 +
 .../alignment_file_one_line_per_sequence.aln.vcf   |     8 +
 tests/data/alignment_file_with_n.aln               |   218 +
 tests/data/alignment_file_with_n.aln.phylip        |   110 +
 tests/data/alignment_file_with_n.aln.snp_sites.aln |   218 +
 tests/data/alignment_file_with_n.aln.vcf           |     8 +
 tests/data/small_alignment.aln                     |     6 +
 tests/data/uneven_alignment.aln                    |     6 +
 tests/helper_methods.c                             |    67 +
 tests/helper_methods.h                             |    25 +
 tests/run_all_tests.c                              |    37 +
 63 files changed, 96251 insertions(+)

-- 
Alioth's /git/debian-med/git-commit-notice on /srv/git.debian.org/git/debian-med/snp-sites.git