[med-svn] [snp-sites] 02/03: Merge branch 'master' of git+ssh://git.debian.org/git/debian-med/snp-sites
Jorge Soares
jssoares-guest at moszumanska.debian.org
Thu Dec 5 16:51:21 UTC 2013
This is an automated email from the git hooks/post-receive script.
jssoares-guest pushed a commit to branch master
in repository snp-sites.
commit d2136755cb7041973229ba4b1cc13d888bfe9af7
Merge: 1c9b798 64f5774
Author: jssoares-guest <j.s.soares at gmail.com>
Date: Thu Dec 5 16:57:51 2013 +0000
Merge branch 'master' of git+ssh://git.debian.org/git/debian-med/snp-sites
.travis.yml | 8 +
AUTHORS | 1 +
INSTALL | 15 +
LICENSE | 339 +
Makefile.am | 1 +
Makefile.in | 761 +
README.md | 40 +
VERSION | 1 +
aclocal.m4 | 9559 ++++++++++
autom4te.cache/output.0 | 18297 +++++++++++++++++++
autom4te.cache/output.1 | 18293 ++++++++++++++++++
autom4te.cache/requests | 291 +
autom4te.cache/traces.0 | 2480 +++
autom4te.cache/traces.1 | 589 +
config.guess | 1530 ++
config.h.in | 68 +
config.sub | 1782 ++
configure | 18293 ++++++++++++++++++
configure.ac | 14 +
debian/README.Debian | 6 +
debian/README.source | 9 +
debian/changelog | 5 +
debian/compat | 1 +
debian/control | 40 +
debian/copyright | 38 +
debian/docs | 1 +
debian/emacsen-install.ex | 47 +
debian/emacsen-remove.ex | 15 +
debian/emacsen-startup.ex | 27 +
debian/init.d.ex | 154 +
debian/libsnp-sites0-dev.install | 8 +
debian/libsnp-sites0.install | 1 +
debian/manpage.1.ex | 56 +
debian/manpage.sgml.ex | 154 +
debian/manpage.xml.ex | 291 +
debian/menu.ex | 2 +
debian/patches/added_specific_lib_to_libsnp-sites0 | 321 +
debian/patches/series | 1 +
debian/postinst.ex | 39 +
debian/postrm.ex | 37 +
debian/preinst.ex | 35 +
debian/prerm.ex | 38 +
debian/rules | 13 +
debian/snp-sites.cron.d.ex | 4 +
debian/snp-sites.default.ex | 10 +
debian/snp-sites.doc-base.EX | 20 +
debian/snp-sites.install | 1 +
debian/source/format | 1 +
debian/watch.ex | 23 +
depcomp | 708 +
install-sh | 527 +
ltmain.sh | 9661 ++++++++++
m4/libtool.m4 | 7983 ++++++++
m4/ltoptions.m4 | 384 +
m4/ltsugar.m4 | 123 +
m4/ltversion.m4 | 23 +
m4/lt~obsolete.m4 | 98 +
missing | 331 +
src/Makefile.am | 22 +
src/Makefile.in | 833 +
src/alignment_file.c | 280 +
src/alignment_file.h | 41 +
src/fasta_of_snp_sites.c | 49 +
src/fasta_of_snp_sites.h | 26 +
src/kseq.h | 235 +
src/main.c | 88 +
src/parse_phylip.c | 51 +
src/parse_phylip.h | 33 +
src/phylib_of_snp_sites.c | 55 +
src/phylib_of_snp_sites.h | 27 +
src/snp_sites.c | 235 +
src/snp_sites.h | 33 +
src/string_cat.c | 42 +
src/string_cat.h | 28 +
src/vcf.c | 178 +
src/vcf.h | 33 +
tests/check_snp_sites.c | 260 +
tests/check_snp_sites.h | 27 +
.../alignment_file_multiple_lines_per_sequence.aln | 226 +
.../data/alignment_file_one_line_per_sequence.aln | 218 +
.../alignment_file_one_line_per_sequence.aln.gz | Bin 0 -> 3447 bytes
...alignment_file_one_line_per_sequence.aln.phylip | 110 +
...nt_file_one_line_per_sequence.aln.snp_sites.aln | 218 +
.../alignment_file_one_line_per_sequence.aln.vcf | 8 +
tests/data/alignment_file_with_n.aln | 218 +
tests/data/alignment_file_with_n.aln.phylip | 110 +
tests/data/alignment_file_with_n.aln.snp_sites.aln | 218 +
tests/data/alignment_file_with_n.aln.vcf | 8 +
tests/data/small_alignment.aln | 6 +
tests/data/uneven_alignment.aln | 6 +
tests/helper_methods.c | 67 +
tests/helper_methods.h | 25 +
tests/run_all_tests.c | 37 +
93 files changed, 97649 insertions(+)
--
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