[med-svn] [snp-sites] branch master updated (5ff3dd8 -> b7f7c48)
Jorge Soares
jssoares-guest at moszumanska.debian.org
Tue Dec 10 09:50:41 UTC 2013
This is an automated email from the git hooks/post-receive script.
jssoares-guest pushed a change to branch master
in repository snp-sites.
from 5ff3dd8 Added .gitignore to this repo
new b7f7c48 Cleaning project to prepare next upload
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
AUTHORS | 1 -
INSTALL | 15 -
LICENSE | 339 -
Makefile.am | 1 -
Makefile.in | 761 -
README.md | 40 -
VERSION | 1 -
aclocal.m4 | 9559 ----------
autom4te.cache/output.0 | 18297 -------------------
autom4te.cache/output.1 | 18293 ------------------
autom4te.cache/requests | 291 -
autom4te.cache/traces.0 | 2480 ---
autom4te.cache/traces.1 | 589 -
config.guess | 1530 --
config.h.in | 68 -
config.sub | 1782 --
configure | 18293 ------------------
configure.ac | 14 -
debian/README.Debian | 6 -
debian/README.source | 9 -
debian/changelog | 5 -
debian/compat | 1 -
debian/control | 40 -
debian/copyright | 38 -
debian/docs | 1 -
debian/libsnp-sites0-dev.install | 8 -
debian/libsnp-sites0.install | 1 -
debian/patches/added_specific_lib_to_libsnp-sites0 | 321 -
debian/patches/series | 1 -
debian/rules | 13 -
debian/snp-sites.install | 1 -
debian/source/format | 1 -
depcomp | 708 -
install-sh | 527 -
ltmain.sh | 9661 ----------
m4/libtool.m4 | 7983 --------
m4/ltoptions.m4 | 384 -
m4/ltsugar.m4 | 123 -
m4/ltversion.m4 | 23 -
m4/lt~obsolete.m4 | 98 -
missing | 331 -
src/Makefile.am | 22 -
src/Makefile.in | 833 -
src/alignment_file.c | 280 -
src/alignment_file.h | 41 -
src/fasta_of_snp_sites.c | 49 -
src/fasta_of_snp_sites.h | 26 -
src/kseq.h | 235 -
src/main.c | 88 -
src/parse_phylip.c | 51 -
src/parse_phylip.h | 33 -
src/phylib_of_snp_sites.c | 55 -
src/phylib_of_snp_sites.h | 27 -
src/snp_sites.c | 235 -
src/snp_sites.h | 33 -
src/string_cat.c | 42 -
src/string_cat.h | 28 -
src/vcf.c | 178 -
src/vcf.h | 33 -
tests/check_snp_sites.c | 260 -
tests/check_snp_sites.h | 27 -
.../alignment_file_multiple_lines_per_sequence.aln | 226 -
.../data/alignment_file_one_line_per_sequence.aln | 218 -
.../alignment_file_one_line_per_sequence.aln.gz | Bin 3447 -> 0 bytes
...alignment_file_one_line_per_sequence.aln.phylip | 110 -
...nt_file_one_line_per_sequence.aln.snp_sites.aln | 218 -
.../alignment_file_one_line_per_sequence.aln.vcf | 8 -
tests/data/alignment_file_with_n.aln | 218 -
tests/data/alignment_file_with_n.aln.phylip | 110 -
tests/data/alignment_file_with_n.aln.snp_sites.aln | 218 -
tests/data/alignment_file_with_n.aln.vcf | 8 -
tests/data/small_alignment.aln | 6 -
tests/data/uneven_alignment.aln | 6 -
tests/helper_methods.c | 67 -
tests/helper_methods.h | 25 -
tests/run_all_tests.c | 37 -
76 files changed, 96689 deletions(-)
delete mode 100644 AUTHORS
delete mode 100644 INSTALL
delete mode 100644 LICENSE
delete mode 100644 Makefile.am
delete mode 100644 Makefile.in
delete mode 100644 README.md
delete mode 100644 VERSION
delete mode 100644 aclocal.m4
delete mode 100644 autom4te.cache/output.0
delete mode 100644 autom4te.cache/output.1
delete mode 100644 autom4te.cache/requests
delete mode 100644 autom4te.cache/traces.0
delete mode 100644 autom4te.cache/traces.1
delete mode 100755 config.guess
delete mode 100644 config.h.in
delete mode 100755 config.sub
delete mode 100755 configure
delete mode 100644 configure.ac
delete mode 100644 debian/README.Debian
delete mode 100644 debian/README.source
delete mode 100644 debian/changelog
delete mode 100644 debian/compat
delete mode 100644 debian/control
delete mode 100644 debian/copyright
delete mode 100644 debian/docs
delete mode 100644 debian/libsnp-sites0-dev.install
delete mode 100644 debian/libsnp-sites0.install
delete mode 100644 debian/patches/added_specific_lib_to_libsnp-sites0
delete mode 100644 debian/patches/series
delete mode 100755 debian/rules
delete mode 100644 debian/snp-sites.install
delete mode 100644 debian/source/format
delete mode 100755 depcomp
delete mode 100755 install-sh
delete mode 100644 ltmain.sh
delete mode 100644 m4/libtool.m4
delete mode 100644 m4/ltoptions.m4
delete mode 100644 m4/ltsugar.m4
delete mode 100644 m4/ltversion.m4
delete mode 100644 m4/lt~obsolete.m4
delete mode 100755 missing
delete mode 100644 src/Makefile.am
delete mode 100644 src/Makefile.in
delete mode 100644 src/alignment_file.c
delete mode 100644 src/alignment_file.h
delete mode 100644 src/fasta_of_snp_sites.c
delete mode 100644 src/fasta_of_snp_sites.h
delete mode 100644 src/kseq.h
delete mode 100644 src/main.c
delete mode 100644 src/parse_phylip.c
delete mode 100644 src/parse_phylip.h
delete mode 100644 src/phylib_of_snp_sites.c
delete mode 100644 src/phylib_of_snp_sites.h
delete mode 100644 src/snp_sites.c
delete mode 100644 src/snp_sites.h
delete mode 100644 src/string_cat.c
delete mode 100644 src/string_cat.h
delete mode 100644 src/vcf.c
delete mode 100644 src/vcf.h
delete mode 100644 tests/check_snp_sites.c
delete mode 100644 tests/check_snp_sites.h
delete mode 100644 tests/data/alignment_file_multiple_lines_per_sequence.aln
delete mode 100644 tests/data/alignment_file_one_line_per_sequence.aln
delete mode 100644 tests/data/alignment_file_one_line_per_sequence.aln.gz
delete mode 100644 tests/data/alignment_file_one_line_per_sequence.aln.phylip
delete mode 100644 tests/data/alignment_file_one_line_per_sequence.aln.snp_sites.aln
delete mode 100644 tests/data/alignment_file_one_line_per_sequence.aln.vcf
delete mode 100644 tests/data/alignment_file_with_n.aln
delete mode 100644 tests/data/alignment_file_with_n.aln.phylip
delete mode 100644 tests/data/alignment_file_with_n.aln.snp_sites.aln
delete mode 100644 tests/data/alignment_file_with_n.aln.vcf
delete mode 100644 tests/data/small_alignment.aln
delete mode 100644 tests/data/uneven_alignment.aln
delete mode 100644 tests/helper_methods.c
delete mode 100644 tests/helper_methods.h
delete mode 100644 tests/run_all_tests.c
--
Alioth's /git/debian-med/git-commit-notice on /srv/git.debian.org/git/debian-med/snp-sites.git
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