[med-svn] samtools annotated tag 0.1.5 created (now 257987f)

[Charles Plessy]

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plessy pushed a change to annotated tag 0.1.5
in repository samtools.

        at  257987f   (tag)
   tagging  9f30c9ba76e0266e896f1199b41e0e7ddf6bd648 (commit)
  replaces  0.1.4
 tagged by  On behalf of Heng Li
        on  Tue Jul 7 10:51:26 2009 +0100

- Log -----------------------------------------------------------------
Samtools 0.1.5, as per old Sourceforge svn tag (revision 374)
(the original canonical release tarball is no longer available).

Heng Li (57):
      * samtools-0.1.4-1 (r304)
      Script for paired-end pileup, contributed by Stephen Montgomery.
      * minor changes to bgzf: return NULL if fd == -1
      * samtools.pl-0.2.0
      * samtools.pl-0.2.1
      * in snpFilter, suppress non-SNP sites
      * samtools.pl-0.2.2
      * samtools-0.1.4-2 (r316)
      * samtools.pl-0.2.3
      * samtools.pl-0.3.0
      * samtools.pl-0.3.1
      a little bit code cleanup
      just typo. no real change
      fixed a typo
      * samtools.pl-0.3.2 (r322)
      * samtools-0.1.4-3 (r324)
      * samtools-0.1.4-4 (r325)
      Unfinished
      * added zlib-1.2.3 as razip requires that
      * update Makefile
      * updated novoalign converter by Colin Hercus et al.
      update information...
      * samtools-0.1.4-5 (r3310
      fixed minor things in Makefile
      update ChangeLog
      * samtools-0.1.4-6 (r334)
      remove zlib for simplification...
      * no changes to samtools itself
      * samtools-0.1.4-7 (r337)
      * samtools-0.1.4-8 (r338)
      update INSTALL
      * samtools-0.1.4-9 (r340)
      * samtools-0.1.4-10 (r341)
      added an example of calculating read depth
      nothing really
      added more comments
      * samtools-0.1.4-11 (r346)
      * samtools-0.1.4-12 (r347)
      * samtools-0.1.4-13 (r350)
      * samtools-0.1.4-13 (r351)
      * samtools-0.1.4-15 (r354)
      * open a file at FTP
      this is the header file
      fixed bugs in knetfile.*
      * samtools-0.1.4-16 (r360)
      * samtools-0.1.4-17 (r361)
      write changelog
      * samtools-0.1.4-18 (r363)
      * samtools-0.1.4-19 (r364)
      * samtools-0.1.4-20 (r365)
      minor changes to knetfile: invalid fd equals -1 rather than 0
      reduce the chance of blocking in FTP connection
      * samtools-0.1.4-21 (r368)
      * samtools-0.1.4-22 (r369)
      update documentation
      * samtools-0.1.4-23 (r372)
      Release samtools-0.1.5

On behalf of Bob Handsaker (1):
      Introduced LIBPATH variable so this could be overridden to allow samtools to build correct at the Broad.

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No new revisions were added by this update.

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