[med-svn] r15593 - in trunk/packages/readseq2/trunk/debian: . patches

[Olivier Sallou]

Author: osallou
Date: 2013-12-23 16:12:34 +0000 (Mon, 23 Dec 2013)
New Revision: 15593

Added:
   trunk/packages/readseq2/trunk/debian/patches/
   trunk/packages/readseq2/trunk/debian/patches/series
   trunk/packages/readseq2/trunk/debian/patches/use_xerces
Modified:
   trunk/packages/readseq2/trunk/debian/changelog
   trunk/packages/readseq2/trunk/debian/control
   trunk/packages/readseq2/trunk/debian/copyright
Log:
update with xerces instead of provided ibm xml parser

Modified: trunk/packages/readseq2/trunk/debian/changelog
===================================================================
--- trunk/packages/readseq2/trunk/debian/changelog	2013-12-22 22:46:43 UTC (rev 15592)
+++ trunk/packages/readseq2/trunk/debian/changelog	2013-12-23 16:12:34 UTC (rev 15593)
@@ -1,6 +1,6 @@
-readseq2 (2.1.30-1) UNRELEASED; urgency=medium
+readseq2 (2.1.30-1) unstable; urgency=medium
 
-  * Initial release (Closes: #???)
+  * Use readseq2 in place of readseq
 
- -- Andreas Tille <tille at debian.org>  Sat, 21 Dec 2013 16:55:29 +0100
+ -- Olivier Sallou <osallou at debian.org>  Sat, 21 Dec 2013 16:55:29 +0100
 

Modified: trunk/packages/readseq2/trunk/debian/control
===================================================================
--- trunk/packages/readseq2/trunk/debian/control	2013-12-22 22:46:43 UTC (rev 15592)
+++ trunk/packages/readseq2/trunk/debian/control	2013-12-23 16:12:34 UTC (rev 15593)
@@ -5,7 +5,8 @@
 Priority: optional
 Build-Depends: debhelper (>= 9),
                javahelper (>=0.25),
-               default-jdk
+               default-jdk,
+               libxerces2-java
 Standards-Version: 3.9.5
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/readseq2/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/readseq2/trunk/

Modified: trunk/packages/readseq2/trunk/debian/copyright
===================================================================
--- trunk/packages/readseq2/trunk/debian/copyright	2013-12-22 22:46:43 UTC (rev 15592)
+++ trunk/packages/readseq2/trunk/debian/copyright	2013-12-23 16:12:34 UTC (rev 15593)
@@ -1,7 +1,9 @@
 Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: Readseq
 Source: http://iubio.bio.indiana.edu/soft/molbio/readseq/java/
-Files-Excluded: lib/orgxml.jar
+Files-Excluded:
+    lib/orgxml.jar
+    lib/ibm-xml4j-min.jar
 
 Files: *
 Copyright: 2000-2010 D. Gilbert <gilbertd at bio.indiana.edu>

Added: trunk/packages/readseq2/trunk/debian/patches/series
===================================================================
--- trunk/packages/readseq2/trunk/debian/patches/series	                        (rev 0)
+++ trunk/packages/readseq2/trunk/debian/patches/series	2013-12-23 16:12:34 UTC (rev 15593)
@@ -0,0 +1 @@
+use_xerces

Added: trunk/packages/readseq2/trunk/debian/patches/use_xerces
===================================================================
--- trunk/packages/readseq2/trunk/debian/patches/use_xerces	                        (rev 0)
+++ trunk/packages/readseq2/trunk/debian/patches/use_xerces	2013-12-23 16:12:34 UTC (rev 15593)
@@ -0,0 +1,13 @@
+--- a/build.xml
++++ b/build.xml
+@@ -46,8 +46,8 @@
+    ! UPDATE THESE to newer xml jars ; also include in readseq.jar
+ -->
+ 
+-  <property name="orgxml.jar" value="${basedir}/lib/orgxml.jar"/>
+-  <property name="xml.jar" value="${basedir}/lib/ibm-xml4j-min.jar"/>
++  <property name="orgxml.jar" value="/usr/share/java/xmlParserAPIs.jar"/>
++  <property name="xml.jar" value="/usr/share/java/xercesImpl.jar"/>
+ 
+ <!-- ==================== Compilation Classpath =========================== -->
+