[med-svn] r15628 - trunk/packages/R/r-bioc-biomart/trunk/debian

[Andreas Tille]

Author: tille
Date: 2013-12-28 00:22:34 +0000 (Sat, 28 Dec 2013)
New Revision: 15628

Added:
   trunk/packages/R/r-bioc-biomart/trunk/debian/upstream
Modified:
   trunk/packages/R/r-bioc-biomart/trunk/debian/changelog
   trunk/packages/R/r-bioc-biomart/trunk/debian/control
   trunk/packages/R/r-bioc-biomart/trunk/debian/copyright
Log:
WNPP bug number; add citations


Modified: trunk/packages/R/r-bioc-biomart/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-biomart/trunk/debian/changelog	2013-12-27 23:59:12 UTC (rev 15627)
+++ trunk/packages/R/r-bioc-biomart/trunk/debian/changelog	2013-12-28 00:22:34 UTC (rev 15628)
@@ -1,5 +1,5 @@
-r-bioc-biomart (2.18.0-1) UNRELEASED; urgency=low
+r-bioc-biomart (2.18.0-1) unstable; urgency=low
 
-  * Initial release (closes: #???).
+  * Initial release (closes: #733278)
 
  -- Andreas Tille <tille at debian.org>  Sat, 28 Dec 2013 00:52:10 +0100

Modified: trunk/packages/R/r-bioc-biomart/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-biomart/trunk/debian/control	2013-12-27 23:59:12 UTC (rev 15627)
+++ trunk/packages/R/r-bioc-biomart/trunk/debian/control	2013-12-28 00:22:34 UTC (rev 15628)
@@ -21,7 +21,7 @@
          r-bioc-biobase,
          r-cran-xml,
          r-cran-rcurl
-Description: GNU R Interface to BioMart databases (e.g. Ensembl, COSMIC, Wormbase and Gramene)
+Description: GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
  In recent years a wealth of biological data has become available in
  public data repositories. Easy access to these valuable data resources
  and firm integration with data analysis is needed for comprehensive

Modified: trunk/packages/R/r-bioc-biomart/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-bioc-biomart/trunk/debian/copyright	2013-12-27 23:59:12 UTC (rev 15627)
+++ trunk/packages/R/r-bioc-biomart/trunk/debian/copyright	2013-12-28 00:22:34 UTC (rev 15628)
@@ -1,11 +1,11 @@
 Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: biomaRt
-Upstream-Contact: Steffen Durinck <sdurinck at gmail.com> 
+Upstream-Contact: Steffen Durinck <sdurinck at gmail.com> 
 Source: http://www.bioconductor.org/packages/release/bioc/html/biomaRt.html
 
 Files: *
-Copyright: © 2006-2013 Steffen Durinck <sdurinck at gmail.com>,
-                       Wolfgang Huber <huber at ebi.ac.uk> 
+Copyright: © 2006-2013 Steffen Durinck <sdurinck at gmail.com>,
+                       Wolfgang Huber <huber at ebi.ac.uk> 
 License: Artistic-2.0
 
 

Added: trunk/packages/R/r-bioc-biomart/trunk/debian/upstream
===================================================================
--- trunk/packages/R/r-bioc-biomart/trunk/debian/upstream	                        (rev 0)
+++ trunk/packages/R/r-bioc-biomart/trunk/debian/upstream	2013-12-28 00:22:34 UTC (rev 15628)
@@ -0,0 +1,22 @@
+Reference:
+ - Author: Steffen Durinck and Paul T. Spellman and Ewan Birney and Wolfgang Huber
+   Title: "Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt"
+   Journal: Nature Protocols
+   Year: 2009
+   Volume: 4
+   Number: 8
+   Pages: 1184--1191
+   DOI: 10.1038/nprot.2009.97
+   PMID: 19617889
+   URL: http://www.nature.com/nprot/journal/v4/n8/full/nprot.2009.97.html
+ - Author: Steffen Durinck and Yves Moreau and Arek Kasprzyk and Sean Davis and Bart De Moor and Alvis Brazma and Wolfgang Huber
+   Title: "BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis"
+   Journal: Bioinformatics
+   Year: 2005
+   Volume: 21
+   Number: 16
+   Pages: 3439--3440
+   DOI: 10.1093/bioinformatics/bti525 
+   PMID: 16082012
+   URL: http://bioinformatics.oxfordjournals.org/content/21/16/3439
+   eprint: http://bioinformatics.oxfordjournals.org/content/21/16/3439.full.pdf+html