[med-svn] r15661 - trunk/packages/R/r-bioc-biovizbase/trunk/debian

[Andreas Tille]

Author: tille
Date: 2013-12-29 18:57:51 +0000 (Sun, 29 Dec 2013)
New Revision: 15661

Added:
   trunk/packages/R/r-bioc-biovizbase/trunk/debian/README.source
Modified:
   trunk/packages/R/r-bioc-biovizbase/trunk/debian/control
Log:
Explain binary files shiped in source package


Added: trunk/packages/R/r-bioc-biovizbase/trunk/debian/README.source
===================================================================
--- trunk/packages/R/r-bioc-biovizbase/trunk/debian/README.source	                        (rev 0)
+++ trunk/packages/R/r-bioc-biovizbase/trunk/debian/README.source	2013-12-29 18:57:51 UTC (rev 15661)
@@ -0,0 +1,57 @@
+Explanation for binary files inside source package according to
+  http://lists.debian.org/debian-devel/2013/09/msg00332.html
+
+Files: inst/extdata/SRR027894subRBM17.bam*
+  The documentation inst/doc/intro.Rnw says:
+    Sample raw data is from SRA(Short Read Archive), Accession: SRR027894
+    and subset the gene at chr10:6118023-6137427, which within gene
+    RBM17. contains junction reads.
+
+Files: data/crc1.GeRL.rda
+  As explained in man/crc1.GeRL.Rd this is a data set of a CRC-1 mutation
+  and structural rearrangment and described in
+ . 
+    Bass AJ, Lawrence MS, Brace LE, Ramos AH, Drier Y, Cibulskis K,
+    Sougnez C, Voet D, Saksena G, Sivachenko A, Jing R, Parkin M, Pugh T,
+    Verhaak RG, Stransky N, Boutin AT, Barretina J, Solit DB, Vakiani E,
+    Shao W, Mishina Y, Warmuth M, Jimenez J, Chiang DY, Signoretti S, Kaelin
+    WG, Spardy N, Hahn WC, Hoshida Y, Ogino S, Depinho RA, Chin L, Garraway
+    LA, Fuchs CS, Baselga J, Tabernero J, Gabriel S, Lander ES, Getz G,
+    Meyerson M.
+    "Genomic sequencing of colorectal adenocarcinomas identifies a recurrent VTI1A-TCF7L2 fusion."
+    Nat Genet. 2011 Sep 4;43(10):964-8. doi: 10.1038/ng.936.
+
+Files: data/darned_hg19_subset500.rda
+  As explained in man/darned_hg19_subset500.Rd this data set provides a
+  subset(500 sites only) of hg19 RNA editing sites, and originally from
+  DARNED (http://darned.ucc.ie/) for the hg19 assembly.
+
+Files: data/genesymbol.rda
+  As explained in man/genesymbol.Rd this data set provides gene symbols in
+  human with position and starnd information, stored as GRanges object.
+  .
+  These data can be obtained for example from
+     http://www.genecards.org/cgi-bin/carddisp.pl?gene=RBM17
+
+Files: data/hg19Ideogram.rda
+  As explained in man/hg19Ideogram.Rd this data set provides hg19 genome
+  information without cytoband information.
+  .
+  These human genome data can be obtained for instance from
+     http://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/
+
+Files: data/hg19IdeogramCyto.rda
+  As explained in man/hg19IdeogramCyto.Rd this data set provides hg19 genome
+  information with cytoband information.
+  .
+  These human genome data can be obtained for instance from
+     http://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/
+
+Files: build/vignette.rds
+ As explained in inst/doc/intro.Rnw this vignette demonstrates some color
+ schemes and different utilities functions using simple examples and data
+ sets.
+
+
+ -- Andreas Tille <tille at debian.org>  Sun, 29 Dec 2013 18:56:22 +0100
+

Modified: trunk/packages/R/r-bioc-biovizbase/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-biovizbase/trunk/debian/control	2013-12-29 18:30:35 UTC (rev 15660)
+++ trunk/packages/R/r-bioc-biovizbase/trunk/debian/control	2013-12-29 18:57:51 UTC (rev 15661)
@@ -21,9 +21,10 @@
 Homepage: http://bioconductor.org/packages/release/bioc/html/biovizBase.html
 
 Package: r-bioc-biovizbase
-Architecture: all
+Architecture: any
 Depends: ${R:Depends},
          ${misc:Depends},
+         ${shlibs:Depends},
          r-cran-dichromat,
          r-cran-hmisc,
          r-cran-rcolorbrewer,