[med-svn] r13025 - in trunk/packages/autodocksuite/trunk/debian: . patches source
Thorsten Alteholz
alteholz at alioth.debian.org
Sun Feb 17 17:53:14 UTC 2013
Author: alteholz
Date: 2013-02-17 17:53:13 +0000 (Sun, 17 Feb 2013)
New Revision: 13025
Added:
trunk/packages/autodocksuite/trunk/debian/patches/make.patch
trunk/packages/autodocksuite/trunk/debian/patches/series
trunk/packages/autodocksuite/trunk/debian/source/
trunk/packages/autodocksuite/trunk/debian/source/format
Modified:
trunk/packages/autodocksuite/trunk/debian/changelog
trunk/packages/autodocksuite/trunk/debian/control
trunk/packages/autodocksuite/trunk/debian/rules
trunk/packages/autodocksuite/trunk/debian/watch
Log:
at least it is building again; some work needed
Modified: trunk/packages/autodocksuite/trunk/debian/changelog
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/changelog 2013-02-17 11:43:24 UTC (rev 13024)
+++ trunk/packages/autodocksuite/trunk/debian/changelog 2013-02-17 17:53:13 UTC (rev 13025)
@@ -1,3 +1,9 @@
+autodocksuite (4.2.5.1-1) UNRELEASED; urgency=low
+
+ * new upstream version
+
+ -- Thorsten Alteholz <debian at alteholz.de> Sat, 16 Feb 2013 20:42:51 +0100
+
autodocksuite (4.2.3-3) UNRELEASED; urgency=low
[ Charles Plessy ]
Modified: trunk/packages/autodocksuite/trunk/debian/control
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/control 2013-02-17 11:43:24 UTC (rev 13024)
+++ trunk/packages/autodocksuite/trunk/debian/control 2013-02-17 17:53:13 UTC (rev 13025)
@@ -3,10 +3,12 @@
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller at debian.org>,
- Charles Plessy <plessy at debian.org>, Nelson A. de Oliveira <naoliv at debian.org>,
- Andreas Tille <tille at debian.org>
+ Charles Plessy <plessy at debian.org>,
+ Nelson A. de Oliveira <naoliv at debian.org>,
+ Andreas Tille <tille at debian.org>,
+ Thorsten Alteholz <debian at alteholz.de>
Build-Depends: debhelper (>= 7), automake, csh
-Standards-Version: 3.9.2
+Standards-Version: 3.9.3
Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/autodocksuite/trunk/
Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/autodocksuite/trunk/
Homepage: http://autodock.scripps.edu/
Added: trunk/packages/autodocksuite/trunk/debian/patches/make.patch
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/patches/make.patch (rev 0)
+++ trunk/packages/autodocksuite/trunk/debian/patches/make.patch 2013-02-17 17:53:13 UTC (rev 13025)
@@ -0,0 +1,14 @@
+Index: src/autogrid/Makefile.am
+===================================================================
+--- src.orig/autogrid/Makefile.am 2013-02-17 18:47:22.000000000 +0100
++++ src/autogrid/Makefile.am 2013-02-17 18:48:18.000000000 +0100
+@@ -155,7 +155,8 @@
+ default_parameters.h : $(srcdir)/../autodock/paramdat2h.csh $(srcdir)/../autodock/AD4_parameters.dat $(srcdir)/../autodock/AD4.1_bound.dat
+ rm -f $@
+ csh $(srcdir)/../autodock/paramdat2h.csh $(srcdir)/../autodock/AD4_parameters.dat $(srcdir)/../autodock/AD4.1_bound.dat > $@
+- sh ../copyfilesfromAD -b # copying from build dir , not source dir
++# sh ./copyfilesfromAD -b # copying from build dir , not source dir
++ sh ./copyfilesfromAD # copying from src dir , not build dir
+
+ # 2007-04-30 MP & GMM: this line is necessary to be able to compile read_parameter_library.o
+ read_parameter_library.o : default_parameters.h
Added: trunk/packages/autodocksuite/trunk/debian/patches/series
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/patches/series (rev 0)
+++ trunk/packages/autodocksuite/trunk/debian/patches/series 2013-02-17 17:53:13 UTC (rev 13025)
@@ -0,0 +1 @@
+make.patch
Modified: trunk/packages/autodocksuite/trunk/debian/rules
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/rules 2013-02-17 11:43:24 UTC (rev 13024)
+++ trunk/packages/autodocksuite/trunk/debian/rules 2013-02-17 17:53:13 UTC (rev 13025)
@@ -6,10 +6,10 @@
SHELL := /bin/bash
-#CXX=g++
-#CC=gcc
-CXX=/usr/lib/gcc-snapshot/bin/g++
-CC=/usr/lib/gcc-snapshot/bin/gcc
+CXX=g++
+CC=gcc
+#CXX=/usr/lib/gcc-snapshot/bin/g++
+#CC=/usr/lib/gcc-snapshot/bin/gcc
# see http://www.gentoo.org/proj/en/qa/asneeded.xml
LDFLAGS="-Wl,--as-needed"
@@ -37,7 +37,7 @@
configure-stamp: $(QUILT_STAMPFN)
dh_testdir
set -e; \
- for d in autogrid autodock; do \
+ for d in autodock autogrid; do \
( cd $$d && autoreconf -i && ./configure CC="$(CC)" CXX="$(CXX)" LDFLAGS="$(LDFLAGS)" CFLAGS="$(CFLAGS)" CXXFLAGS="$(CXXFLAGS)" --prefix=/usr ) \
done
@@ -48,7 +48,12 @@
build-arch: build-arch-stamp
build-arch-stamp: configure-stamp
set -e; \
- for d in autogrid autodock; do $(MAKE) -C $$d; done
+ pwd; \
+ find; \
+ for d in autodock autogrid; do $(MAKE) -C $$d; done
+# for d in autogrid autodock; do \
+# ( cd $$d && $(MAKE)) \
+# done
touch $@
build-indep: build-indep-stamp
@@ -117,3 +122,8 @@
binary: binary-arch binary-indep
.PHONY: build clean binary-indep binary-arch binary install install-indep install-arch configure
+
+get-orig-source:
+ mkdir -p ../tarballs
+ uscan --verbose --force-download --destdir=../tarballs
+
Added: trunk/packages/autodocksuite/trunk/debian/source/format
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/source/format (rev 0)
+++ trunk/packages/autodocksuite/trunk/debian/source/format 2013-02-17 17:53:13 UTC (rev 13025)
@@ -0,0 +1 @@
+3.0 (quilt)
Modified: trunk/packages/autodocksuite/trunk/debian/watch
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/watch 2013-02-17 11:43:24 UTC (rev 13024)
+++ trunk/packages/autodocksuite/trunk/debian/watch 2013-02-17 17:53:13 UTC (rev 13025)
@@ -1,6 +1,4 @@
version=3
## rc (release candidates) have to be lower than the final version
-#opts="dversionmangle=s/\+rc/~rc/" \
-#http://autodock.scripps.edu/downloads/autodock-registration/autodock-4-2-download-page/ \.\./autodock-registration/tars/.*/autodocksuite-(.*)-src\.tar\.gz
-# Please help with the watch file
-http://autodock.scripps.edu/downloads/autodock-registration/tars/dist423/autodocksuite-(4.2.3)-src.tar.gz
+opts="dversionmangle=s/\+rc/~rc/" \
+http://autodock.scripps.edu/downloads/autodock-registration/autodock-4-2-download-page/ tars/.*/autodocksuite-(.*)-src\.tar\.gz
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