[med-svn] [Debian Wiki] Update of "DebianMed/PredictProtein" by LaszloKajan
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Wed Feb 27 21:29:33 UTC 2013
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The "DebianMed/PredictProtein" page has been changed by LaszloKajan:
http://wiki.debian.org/DebianMed/PredictProtein?action=diff&rev1=2&rev2=3
Comment:
added test run command
== Installation ==
{{{
- apt-get install predictprotein
+ $ apt-get install predictprotein
}}}
=== Databases ===
@@ -27, +27 @@
Create `/etc/predictproteinrc` with these values (replace `${YOUR_DATA_ROOT}` with the actual value):
{{{
# Override default predictprotein configuration in /usr/share/predictprotein/predictproteinrc.default with these values:
+ [predictprotein]
bigblastdb=${YOUR_DATA_ROOT}/rostlab-data/data/big/big
big80blastdb=${YOUR_DATA_ROOT}/rostlab-data/data/big/big_80
prositedat=${YOUR_DATA_ROOT}/rostlab-data/data/prosite/prosite.dat
@@ -38, +39 @@
}}}
== Test run ==
+ Running this example will take a few minutes:
+ {{{
+ $ predictprotein --seqfile /usr/share/doc/predictprotein/examples/tquick.fasta --output-dir /tmp/pp
+ }}}
== See also ==
-
+ * [[https://rostlab.org/owiki/index.php/PredictProtein_-_Documentation|PredictProtein Documentation]]
----
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## CategorySomething | CategoryAnother
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