[med-svn] r12797 - trunk/packages/meme/trunk/debian

[Andreas Tille]

Author: tille
Date: 2013-01-16 10:59:47 +0000 (Wed, 16 Jan 2013)
New Revision: 12797

Added:
   trunk/packages/meme/trunk/debian/rules
Log:
Recreate rules with 755


Added: trunk/packages/meme/trunk/debian/rules
===================================================================
--- trunk/packages/meme/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/meme/trunk/debian/rules	2013-01-16 10:59:47 UTC (rev 12797)
@@ -0,0 +1,59 @@
+#!/usr/bin/make -f
+# debian/rules file for meme
+# Andreas Tille <tille at debian.org>
+# Thorsten Alteholz <debian at alteholz.de>
+# GPL
+
+DBPATH=/var/lib/meme
+LOGPATH=/var/log/meme
+MODULES=alphtype ama ama-qvalues ame beadstring beeml2meme cat_max centrimo ceqlogo changetoweb chen2meme clustalw-io clustalw2fasta clustalw2phylip compare_dates compute-prior-dist compute-uniform-priors download draw-mhmm dreme dust fasta-center fasta-dinucleotide-shuffle fasta-dinucleotide-shuffle.py fasta-fetch fasta-get-markov fasta-hamming-enrich fasta-hamming-enrich.py fasta-io fasta-make-index fasta-shuffle-letters fasta-subsample fasta-unique-names fimo fitevd gendb get_db_csv getsize gomo gomo_highlight hart2meme-bkg hartemink2psp hypergeometric.py iupac2meme jaspar2meme llr log-hmm mast mast2txt mcast meme meme-chip meme-get-motif meme-xml-html meme.bin meme2images meme2meme meme_p metameme mhmm mhmm-io mhmm2html mhmme mhmms mhmmscan motiph nmica2meme oldmeme2meme plotgen pmp_bf prior_utils.pl priority2meme psp-gen purge qvalue ramen ranksum_test read_fasta_file.pl reconcile-tree-alignment reduce-alignment remove-alignment-gaps rna2meme scpd2meme sd sequence.py shadow spamo taipale2meme tamo2meme tomtom transfac2meme tree uniprobe2meme update_db update_meme_tests xsltproc_lite
+
+%:
+	dh $@ --with autoreconf,python2
+
+override_dh_auto_configure:
+	./configure --prefix=/usr --mandir=\$${prefix}/share/man --infodir=\$${prefix}/share/info --host=$(DEB_HOST_GNU_TYPE) --build=$(DEB_BUILD_GNU_TYPE) --sysconfdir=/etc/meme \
+	--with-logs=$(LOGPATH)  --with-db=$(DBPATH)
+
+override_dh_auto_install:
+	# make MEME_DB=`pwd`/debian/meme/$(DBPATH) install
+	dh_auto_install -- MEME_DB=$(DBPATH)
+
+override_dh_install:
+	#Sort out some funny locations used by upstream
+	mv debian/tmp/usr/doc/examples debian/tmp || true
+	mkdir -p debian/tmp/usr/share/doc/meme ; mv debian/tmp/usr/doc/* debian/tmp/usr/share/doc/meme
+	mv debian/tmp/etc/meme/meme.doc debian/tmp/usr/share/doc/meme
+	find ./* -print|grep STRGGTCAN.meme|xargs chmod 644
+	find ./* -print
+	mkdir -p debian/tmp/usr/share/perl5/Meme
+	cp website/scripts/*.pm debian/tmp/usr/share/perl5/Meme
+	cp scripts/*.pm debian/tmp/usr/share/perl5/Meme
+	mkdir -p debian/tmp-manpages
+	$(foreach var,$(MODULES), /usr/bin/pod2man debian/tmp/usr/bin/$(var) > debian/tmp-manpages/$(var).1;)
+	dh_install -v --sourcedir=debian/tmp
+	find ./* -print
+
+override_dh_auto_clean:
+	dh_auto_clean
+	rm -rf tests/*/*.sed
+	rm -rf tests/results
+	cd etc; rm -f fasta_db.csv fasta_db.index gomo_db.csv logo.js.xsl meme.css.xsl motif_db.csv motif_db.index tomtom_config.xml
+	rm -f scripts/*.pyc
+	rm -f aclocal.m4
+	find -type f -name Makefile -exec rm '{}' ';'
+
+#XXX Disable testing temporarily to save time
+override_dh_auto_test:
+	true
+
+override_dh_compress:
+	dh_compress -v -X.doc
+
+get-orig-source:
+	mkdir -p ../tarballs
+	uscan --verbose --force-download --destdir=../tarballs
+	cd ../tarballs; \
+	wget -r --no-directories --no-parent -l2 ftp://ftp.ebi.edu.au/pub/software/MEME/r4.9.0/patches \
+	rm -f .r.html
+	echo "Make sure you use the downloaded patches `ls ../tarballs/patch_*` as quilt patch and use the proper patch level in package version in debian/copyright."


Property changes on: trunk/packages/meme/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *