[med-svn] r14259 - trunk/packages/ampliconnoise/trunk/debian

[Andreas Tille]

Author: tille
Date: 2013-07-30 08:48:04 +0000 (Tue, 30 Jul 2013)
New Revision: 14259

Added:
   trunk/packages/ampliconnoise/trunk/debian/doc-base
   trunk/packages/ampliconnoise/trunk/debian/docs
Removed:
   trunk/packages/ampliconnoise/trunk/debian/ampliconnoise.docs
   trunk/packages/ampliconnoise/trunk/debian/docs
Modified:
   trunk/packages/ampliconnoise/trunk/debian/changelog
   trunk/packages/ampliconnoise/trunk/debian/rules
Log:
Add doc-base file


Deleted: trunk/packages/ampliconnoise/trunk/debian/ampliconnoise.docs
===================================================================
--- trunk/packages/ampliconnoise/trunk/debian/ampliconnoise.docs	2013-07-30 08:15:11 UTC (rev 14258)
+++ trunk/packages/ampliconnoise/trunk/debian/ampliconnoise.docs	2013-07-30 08:48:04 UTC (rev 14259)
@@ -1 +0,0 @@
-Doc.pdf

Modified: trunk/packages/ampliconnoise/trunk/debian/changelog
===================================================================
--- trunk/packages/ampliconnoise/trunk/debian/changelog	2013-07-30 08:15:11 UTC (rev 14258)
+++ trunk/packages/ampliconnoise/trunk/debian/changelog	2013-07-30 08:48:04 UTC (rev 14259)
@@ -10,6 +10,9 @@
     stripped off their tarball
   * debian/README.source: Removed because it became now
     unneeded.
+  * debian/doc-base: created
+  * debian/rules:
+     - do not compress pdf files
 
  -- Andreas Tille <tille at debian.org>  Tue, 30 Jul 2013 09:49:02 +0200
 

Added: trunk/packages/ampliconnoise/trunk/debian/doc-base
===================================================================
--- trunk/packages/ampliconnoise/trunk/debian/doc-base	                        (rev 0)
+++ trunk/packages/ampliconnoise/trunk/debian/doc-base	2013-07-30 08:48:04 UTC (rev 14259)
@@ -0,0 +1,19 @@
+Document: ampliconnoise
+Title: Documentation of Tools for Noise Removal from Pyrosequenced Amplicons
+Author:  Christopher Quince <quince at civil.gla.ac.uk>
+Abstract: Programs for the removal of noise from 454 sequenced PCR amplicons
+ AmpliconNoise is a package of applications to clean up high-throughput
+ sequence data.  It consists of three main parts:
+ .
+ Pyronoise - does flowgram-based clustering to spot misreads
+ SeqNoise - removes PCR point mutations
+ Perseus - removes PCR chimeras without the need for a set of reference
+ sequences
+ .
+ Previously there was a standalone "Pyronoise" by the same authors and
+ this package includes an updated version.  There is also a "Denoiser"
+ in Qiime which is related but distinct.
+Section: Science/Biology
+
+Format: pdf
+Files: /usr/share/doc/ampliconnoise/Doc.pdf

Deleted: trunk/packages/ampliconnoise/trunk/debian/docs
===================================================================
Copied: trunk/packages/ampliconnoise/trunk/debian/docs (from rev 14255, trunk/packages/ampliconnoise/trunk/debian/ampliconnoise.docs)
===================================================================
--- trunk/packages/ampliconnoise/trunk/debian/docs	                        (rev 0)
+++ trunk/packages/ampliconnoise/trunk/debian/docs	2013-07-30 08:48:04 UTC (rev 14259)
@@ -0,0 +1 @@
+Doc.pdf

Modified: trunk/packages/ampliconnoise/trunk/debian/rules
===================================================================
--- trunk/packages/ampliconnoise/trunk/debian/rules	2013-07-30 08:15:11 UTC (rev 14258)
+++ trunk/packages/ampliconnoise/trunk/debian/rules	2013-07-30 08:48:04 UTC (rev 14259)
@@ -35,6 +35,9 @@
 	  ln -s ampliconnoise.1 debian/ampliconnoise/usr/share/man/man1/`basename "$$f"`.1 ; \
 	done )
 
+override_dh_compress:
+	dh_compress --exclude=.pdf
+
 #get-orig-source:
 #	uscan --verbose --force-download --repack-compression xz