[med-svn] r14261 - trunk/packages/ampliconnoise/trunk/debian/patches

[Andreas Tille]

Author: tille
Date: 2013-07-30 09:41:17 +0000 (Tue, 30 Jul 2013)
New Revision: 14261

Modified:
   trunk/packages/ampliconnoise/trunk/debian/patches/fix-path-for-data.patch
   trunk/packages/ampliconnoise/trunk/debian/patches/fix-segfault-on-non-fasta-input.patch
Log:
Refreshed patches


Modified: trunk/packages/ampliconnoise/trunk/debian/patches/fix-path-for-data.patch
===================================================================
--- trunk/packages/ampliconnoise/trunk/debian/patches/fix-path-for-data.patch	2013-07-30 08:50:14 UTC (rev 14260)
+++ trunk/packages/ampliconnoise/trunk/debian/patches/fix-path-for-data.patch	2013-07-30 09:41:17 UTC (rev 14261)
@@ -11,7 +11,7 @@
 
 --- a/SeqNoise/SeqNoise.h
 +++ b/SeqNoise/SeqNoise.h
-@@ -113,7 +113,7 @@
+@@ -113,7 +113,7 @@ typedef struct s_Master
  /********DEFAULTS***********/
  #define DEF_SIGMA    30.0
  #define DEF_CUT      0.08
@@ -22,7 +22,7 @@
  /******Programming Constants************/
 --- a/SeqDist/SeqDist.h
 +++ b/SeqDist/SeqDist.h
-@@ -71,7 +71,7 @@
+@@ -71,7 +71,7 @@ typedef struct s_Data
  
  /* User defined structures */
  
@@ -55,7 +55,7 @@
  #define INIT_FILE                "-lin"
 --- a/Perseus/Perseus.h
 +++ b/Perseus/Perseus.h
-@@ -90,7 +90,7 @@
+@@ -90,7 +90,7 @@ typedef struct s_Data
  #define WEIGHTDELIM     '_'
  
  #define N_BASES 4

Modified: trunk/packages/ampliconnoise/trunk/debian/patches/fix-segfault-on-non-fasta-input.patch
===================================================================
--- trunk/packages/ampliconnoise/trunk/debian/patches/fix-segfault-on-non-fasta-input.patch	2013-07-30 08:50:14 UTC (rev 14260)
+++ trunk/packages/ampliconnoise/trunk/debian/patches/fix-segfault-on-non-fasta-input.patch	2013-07-30 09:41:17 UTC (rev 14261)
@@ -4,7 +4,7 @@
 Also fixes https://code.google.com/p/ampliconnoise/issues/detail?id=10
 --- a/FastaUnique/FastaUnique.c
 +++ b/FastaUnique/FastaUnique.c
-@@ -39,6 +39,13 @@
+@@ -39,6 +39,13 @@ void readData(t_Data *ptData, t_Params *
  	nPos = 0;
        }
        else{
@@ -18,7 +18,7 @@
  	i = 0;
  	while(strrchr(szSequence,szLine[i]) != NULL){
  	  i++;
-@@ -46,6 +53,10 @@
+@@ -46,6 +53,10 @@ void readData(t_Data *ptData, t_Params *
  	}
        }
      }
@@ -31,7 +31,7 @@
    }
 --- a/NDist/NDist.c
 +++ b/NDist/NDist.c
-@@ -654,6 +654,13 @@
+@@ -654,6 +654,13 @@ void readData(t_Data *ptData, t_Params *
  	nPos = 0;
        }
        else{
@@ -45,7 +45,7 @@
  	i = 0;
  	while(strrchr(szSequence,szLine[i]) != NULL){
  	  i++;
-@@ -661,6 +668,10 @@
+@@ -661,6 +668,10 @@ void readData(t_Data *ptData, t_Params *
  	}
        }
      }
@@ -58,7 +58,7 @@
    }
 --- a/Perseus/Perseus.c
 +++ b/Perseus/Perseus.c
-@@ -725,6 +725,13 @@
+@@ -725,6 +725,13 @@ void readData(char* szInputFile, t_Data
  	nPos = 0;
        }
        else{
@@ -72,7 +72,7 @@
  	i = 0;
  	while(strrchr(szSequence,szLine[i]) != NULL){
  	  i++;
-@@ -732,6 +739,10 @@
+@@ -732,6 +739,10 @@ void readData(char* szInputFile, t_Data
  	}
        }
      }
@@ -85,7 +85,7 @@
    }
 --- a/PerseusD/PerseusD.c
 +++ b/PerseusD/PerseusD.c
-@@ -782,6 +782,13 @@
+@@ -782,6 +782,13 @@ void readData(char* szInputFile, t_Data
  	nPos = 0;
        }
        else{
@@ -99,7 +99,7 @@
  	i = 0;
  	while(strrchr(szSequence,szLine[i]) != NULL){
  	  i++;
-@@ -789,6 +796,10 @@
+@@ -789,6 +796,10 @@ void readData(char* szInputFile, t_Data
  	}
        }
      }
@@ -112,7 +112,7 @@
    }
 --- a/SeqDist/SeqDist.c
 +++ b/SeqDist/SeqDist.c
-@@ -799,6 +799,13 @@
+@@ -799,6 +799,13 @@ void readData(t_Data *ptData, t_Params *
  	nPos = 0;
        }
        else{
@@ -126,7 +126,7 @@
  	i = 0;
  	while(strrchr(szSequence,szLine[i]) != NULL){
  	  i++;
-@@ -806,6 +813,10 @@
+@@ -806,6 +813,10 @@ void readData(t_Data *ptData, t_Params *
  	}
        }
      }
@@ -139,7 +139,7 @@
    }
 --- a/SeqNoise/SeqNoise.c
 +++ b/SeqNoise/SeqNoise.c
-@@ -571,6 +571,13 @@
+@@ -571,6 +571,13 @@ void readData(t_Data *ptData, t_Params *
  	nPos = 0;
        }
        else{
@@ -153,7 +153,7 @@
  	i = 0;
  	while(strrchr(szSequence,szLine[i]) != NULL){
  	  i++;
-@@ -578,6 +585,10 @@
+@@ -578,6 +585,10 @@ void readData(t_Data *ptData, t_Params *
  	}
        }
      }