[med-svn] r13786 - in trunk/packages/ncbi-blast+/trunk/debian: . patches

[Olivier Sallou]

Author: osallou
Date: 2013-06-01 11:07:50 +0000 (Sat, 01 Jun 2013)
New Revision: 13786

Modified:
   trunk/packages/ncbi-blast+/trunk/debian/control
   trunk/packages/ncbi-blast+/trunk/debian/patches/enable_clean_after_failed_compile
   trunk/packages/ncbi-blast+/trunk/debian/patches/skip_services_unit_test
   trunk/packages/ncbi-blast+/trunk/debian/rules
Log:
add headers to patches, prepare for upload

Modified: trunk/packages/ncbi-blast+/trunk/debian/control
===================================================================
--- trunk/packages/ncbi-blast+/trunk/debian/control	2013-06-01 07:38:29 UTC (rev 13785)
+++ trunk/packages/ncbi-blast+/trunk/debian/control	2013-06-01 11:07:50 UTC (rev 13786)
@@ -2,13 +2,12 @@
 Section: science
 Priority: optional
 Build-Depends: autotools-dev (>= 20100122),
-               debhelper (>= 7.0.50~),
+               debhelper (>= 9),
                dpkg-dev (>= 1.16.1),
                libboost-test-dev,
                libbz2-dev,
                libc0.3-dev (>= 2.13-9~) [hurd-i386],
                libpcre3-dev,
-               quilt (>= 0.46-7~),
                time,
                zlib1g-dev
 Standards-Version: 3.9.3

Modified: trunk/packages/ncbi-blast+/trunk/debian/patches/enable_clean_after_failed_compile
===================================================================
--- trunk/packages/ncbi-blast+/trunk/debian/patches/enable_clean_after_failed_compile	2013-06-01 07:38:29 UTC (rev 13785)
+++ trunk/packages/ncbi-blast+/trunk/debian/patches/enable_clean_after_failed_compile	2013-06-01 11:07:50 UTC (rev 13786)
@@ -1,3 +1,8 @@
+Subject: clean after failure
+Description: Enable clean
+Author: Tim Booth
+Last-Updated: 2013-06-01
+Forwarded: no
 --- a/c++/src/build-system/new_module.sh.in
 +++ b/c++/src/build-system/new_module.sh.in
 @@ -178,7 +178,7 @@

Modified: trunk/packages/ncbi-blast+/trunk/debian/patches/skip_services_unit_test
===================================================================
--- trunk/packages/ncbi-blast+/trunk/debian/patches/skip_services_unit_test	2013-06-01 07:38:29 UTC (rev 13785)
+++ trunk/packages/ncbi-blast+/trunk/debian/patches/skip_services_unit_test	2013-06-01 11:07:50 UTC (rev 13786)
@@ -1,3 +1,8 @@
+Subject: remove network required test
+Author: Tim Booth
+Forwarded: no
+Description: test require internet connection
+Last-Updated: 2013-06-01
 --- a/c++/src/objtools/blast/services/unit_test/Makefile.blast_services_unit_test.app
 +++ b/c++/src/objtools/blast/services/unit_test/Makefile.blast_services_unit_test.app
 @@ -11,6 +11,7 @@

Modified: trunk/packages/ncbi-blast+/trunk/debian/rules
===================================================================
--- trunk/packages/ncbi-blast+/trunk/debian/rules	2013-06-01 07:38:29 UTC (rev 13785)
+++ trunk/packages/ncbi-blast+/trunk/debian/rules	2013-06-01 11:07:50 UTC (rev 13786)
@@ -4,6 +4,7 @@
 # Uncomment this to turn on verbose mode.
 #export DH_VERBOSE=1
 
+
 DEB_CONFIGURE_EXTRA_FLAGS=--with-dll --with-mt --without-autodep \
     --without-makefile-auto-update --with-flat-makefile --without-caution \
     --without-dbapi --without-lzo --with-runpath=/usr/lib/ncbi-blast+ \
@@ -14,7 +15,10 @@
 DEB_CONFIGURE_EXTRA_FLAGS += --with-symbols
 endif
 
+#export DEB_BUILD_MAINT_OPTIONS=hardening=+all,-pie
 export DEB_BUILD_MAINT_OPTIONS=hardening=+all,-pie
+export DEB_CFLAGS_MAINT_APPEND=-Wall -pedantic
+export DEB_LDFLAGS_MAINT_APPEND=-Wl,--as-needed
 
 DEB_HOST_ARCH := $(shell dpkg-architecture -qDEB_HOST_ARCH)
 
@@ -30,6 +34,7 @@
 
 export CFLAGS CPPFLAGS CXXFLAGS LDFLAGS MAKE
 
+
 llp=LD_LIBRARY_PATH
 override_dh_auto_configure:
 	cd c++  &&  $(llp)=$(CURDIR)/c++/BUILD/lib$${$(llp)+:$$$(llp)} \