[med-svn] r13863 - trunk/packages/mira/trunk/debian

[Andreas Tille]

Author: tille
Date: 2013-06-07 07:24:27 +0000 (Fri, 07 Jun 2013)
New Revision: 13863

Modified:
   trunk/packages/mira/trunk/debian/changelog
   trunk/packages/mira/trunk/debian/convert_project.1
   trunk/packages/mira/trunk/debian/fasta2frag.1
Log:
Reviewed manpage for fasta2frag


Modified: trunk/packages/mira/trunk/debian/changelog
===================================================================
--- trunk/packages/mira/trunk/debian/changelog	2013-06-07 07:15:58 UTC (rev 13862)
+++ trunk/packages/mira/trunk/debian/changelog	2013-06-07 07:24:27 UTC (rev 13863)
@@ -21,7 +21,8 @@
   
   [ Andreas Tille ]
   * delete debian/README.source which is outdated / wrong
-  * debian/{mira.1,miradiff.1,miramer.1, scftool.1, convert_project.1}:
+  * debian/{mira.1,miradiff.1,miramer.1, scftool.1, convert_project.1,
+    fasta2frag.1}:
     Wrote manpage for some programs
   * Removed debian/obsolete.mira-assembler.install
 

Modified: trunk/packages/mira/trunk/debian/convert_project.1
===================================================================
--- trunk/packages/mira/trunk/debian/convert_project.1	2013-06-07 07:15:58 UTC (rev 13862)
+++ trunk/packages/mira/trunk/debian/convert_project.1	2013-06-07 07:24:27 UTC (rev 13863)
@@ -2,8 +2,8 @@
 .SH NAME
 convert_project \- convert assembly and sequencing file types
 .SH DESCRIPTION
-This program is part of the MIRA assembler package. converting project file
-types into other types.   Please check out the
+This program is part of the MIRA assembler package. It is used to convert
+project file types into other types.   Please check out the
 documentation below for more detailed information about convert_project.
 .SH SYNOPSIS
 .IP convert_project

Modified: trunk/packages/mira/trunk/debian/fasta2frag.1
===================================================================
--- trunk/packages/mira/trunk/debian/fasta2frag.1	2013-06-07 07:15:58 UTC (rev 13862)
+++ trunk/packages/mira/trunk/debian/fasta2frag.1	2013-06-07 07:24:27 UTC (rev 13863)
@@ -1,11 +1,17 @@
-.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.42.1.
-.TH FASTA2FRAG "1" "June 2013" "fasta2frag" "User Commands"
+.TH FASTA2FRAG "1" "June 2013" "3.9.17" "User Commands"
 .SH NAME
 .B fasta2frag \- splits a single fasta sequence into several overlapping fragments.
 .SH DESCRIPTION
-Usage:
+This program is part of the MIRA assembler package.  The purpose of fasta2frag
+is to fragment sequences into smaller, overlapping
+subsequences. It can be used for simulating shotgun sequences. It can create
+subsequences in both directions (/default) and also paired-end sequences.
+Please check out the
+documentation below for more detailed information about fasta2frag.
+.SH SYNOPSIS
+fasta2frag
 \fI<options> infile outfile\fR
-.TP
+.SH OPTIONS
 \fB\-l\fR
 int      Length of fragments (default=3000)
 .TP
@@ -67,3 +73,23 @@
 .TP
 \fB\-namesuffix\fR
 string   suffix name with string
+.SH "SEE ALSO"
+A more extensive documentation is provided in the mira-doc package and can be found at
+/usr/share/doc/mira-assembler/DefinitiveGuideToMIRA.html.
+.PP
+You can also subscribe one of the MIRA mailing lists at
+.IP
+http://www.chevreux.org/mira_mailinglists.html
+.PP
+After subscribing, mail general questions to the MIRA talk mailing list:
+.IP
+mira_talk at freelists.org
+.SH BUGS
+To report bugs or ask for features, please use the new ticketing system at:
+.IP
+http://sourceforge.net/apps/trac/mira\-assembler/
+.SH AUTHOR
+The author of the mira code is Bastien Chevreux <bach at chevreux.org>
+.PP
+This manual page was written by Andreas Tille <tille at debian.org> but can be freely used for any other
+distribution.