[med-svn] r13867 - trunk/packages/mira/trunk/debian

[Andreas Tille]

Author: tille
Date: 2013-06-07 07:51:26 +0000 (Fri, 07 Jun 2013)
New Revision: 13867

Modified:
   trunk/packages/mira/trunk/debian/changelog
   trunk/packages/mira/trunk/debian/fastaselect.1
   trunk/packages/mira/trunk/debian/fastqselect.1
Log:
Cut-n-paste fastaselect.1 to fastqselect.1


Modified: trunk/packages/mira/trunk/debian/changelog
===================================================================
--- trunk/packages/mira/trunk/debian/changelog	2013-06-07 07:45:19 UTC (rev 13866)
+++ trunk/packages/mira/trunk/debian/changelog	2013-06-07 07:51:26 UTC (rev 13867)
@@ -22,7 +22,7 @@
   [ Andreas Tille ]
   * delete debian/README.source which is outdated / wrong
   * debian/{mira.1,miradiff.1,miramer.1, scftool.1, convert_project.1,
-    fasta2frag.1, fastaselect.1, fastatool.1}:
+    fasta2frag.1, fast[aq]select.1, fastatool.1}:
     Wrote manpage for some programs
   * Removed debian/obsolete.mira-assembler.install
   * debian/control: The actual scripts do not contain the .tcl suffix

Modified: trunk/packages/mira/trunk/debian/fastaselect.1
===================================================================
--- trunk/packages/mira/trunk/debian/fastaselect.1	2013-06-07 07:45:19 UTC (rev 13866)
+++ trunk/packages/mira/trunk/debian/fastaselect.1	2013-06-07 07:51:26 UTC (rev 13867)
@@ -24,6 +24,8 @@
 \fB\-outfile\fR name
 filename where to write selcted sequences to
 .SH "SEE ALSO"
+fastqselect(1)
+.PP
 A more extensive documentation is provided in the mira-doc package and can be found at
 /usr/share/doc/mira-assembler/DefinitiveGuideToMIRA.html.
 .PP

Modified: trunk/packages/mira/trunk/debian/fastqselect.1
===================================================================
--- trunk/packages/mira/trunk/debian/fastqselect.1	2013-06-07 07:45:19 UTC (rev 13866)
+++ trunk/packages/mira/trunk/debian/fastqselect.1	2013-06-07 07:51:26 UTC (rev 13867)
@@ -1,15 +1,47 @@
-.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.42.1.
-.TH FASTQSELECT "1" "June 2013" "fastqselect" "User Commands"
+.TH FASTQSELECT "1" "June 2013" "3.9.17" "User Commands"
 .SH NAME
-.B fastqselect \- Select fastq sequences in a file according to names given in a name file.
+.B fastqselect \- select fastq sequences in a file
 .SH DESCRIPTION
-Usage: fastqselect \fI<options>\fR
+This script selects fastq sequences in a file according to names given
+in a name file.  Given a FASTQ file (and possibly a FASTQ quality file) and
+a file with names of reads, select the sequences from the input FASTQ (and
+quality file) and writes them to an output FASTQ.
+.PP
+If fastq quality file is present (same basename, but with .qual appended),
+then also selects sequences from there.
+.PP
+Please check out the documentation below for more detailed information.
+.SH SYNOPSIS
+fastqselect \fI<options>\fR
+.SH OPTIONS
 .TP
 \fB\-infile\fR
-name   filename containing all fasta sequences
+name   filename containing all fastq sequences
 .TP
 \fB\-name\fR
 name   filename containing all names of sequences to select
 .TP
 \fB\-outfile\fR name
 filename where to write selcted sequences to
+.SH "SEE ALSO"
+fastaselect(1)
+.PP
+A more extensive documentation is provided in the mira-doc package and can be found at
+/usr/share/doc/mira-assembler/DefinitiveGuideToMIRA.html.
+.PP
+You can also subscribe one of the MIRA mailing lists at
+.IP
+http://www.chevreux.org/mira_mailinglists.html
+.PP
+After subscribing, mail general questions to the MIRA talk mailing list:
+.IP
+mira_talk at freelists.org
+.SH BUGS
+To report bugs or ask for features, please use the new ticketing system at:
+.IP
+http://sourceforge.net/apps/trac/mira\-assembler/
+.SH AUTHOR
+The author of the mira code is Bastien Chevreux <bach at chevreux.org>
+.PP
+This manual page was written by Andreas Tille <tille at debian.org> but can be freely used for any other
+distribution.