[med-svn] [SCM] bowtie2 branch, master, updated. upstream/2.1.0-63-g5cc8fc5

[Alexandre Mestiashvili]

The following commit has been merged in the master branch:
commit eaa686b82ca1c4c19c21ade7cacb974aafb0a91a
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Tue Jun 25 14:01:22 2013 +0200

     - d/control: fixed description for bowtie2-examples,
        bumped Standards-Version,
        removed DM-Upload-Allowed,
        updated use canonical vcs
     - d/tests/: renamed test, so it contains only valid symbols

diff --git a/debian/changelog b/debian/changelog
index a8e3e49..53482a1 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+bowtie2 (2.1.0-2) unstable; urgency=low
+
+  * Closes: #713000 
+
+ -- Alexandre Mestiashvili <alex at biotec.tu-dresden.de>  Tue, 25 Jun 2013 13:58:18 +0200
+
 bowtie2 (2.1.0-1) unstable; urgency=low
 
   * - d/help2man-wrapper: as kindly suggested by Andreas Tille 
diff --git a/debian/control b/debian/control
index 26adbad..08af03f 100644
--- a/debian/control
+++ b/debian/control
@@ -2,16 +2,15 @@ Source: bowtie2
 Section: science
 Priority: extra
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-DM-Upload-Allowed: yes
 Uploaders: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>,
  Andreas Tille <tille at debian.org>,
  Carlos Borroto <carlos.borroto at gmail.com>
 Build-Depends: debhelper (>= 9.0), help2man
-Standards-Version: 3.9.3
+Standards-Version: 3.9.4
 XS-Testsuite: autopkgtest
 Homepage: http://bowtie-bio.sourceforge.net/bowtie2
-Vcs-Browser: http://git.debian.org/?p=debian-med/bowtie2.git
-Vcs-Git: git://git.debian.org/debian-med/bowtie2.git
+Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/bowtie2.git
+Vcs-Git: git://anonscm.debian.org/debian-med/bowtie2.git
 
 Package: bowtie2
 Architecture: amd64 i386 hurd-i386 kfreebsd-amd64 kfreebsd-i386
@@ -32,8 +31,8 @@ Architecture: all
 Depends: ${misc:Depends}
 Recommends: bowtie2
 Enhances: bowtie2
-Description: Examples for bowtie2, 
- an ultrafast and memory-efficient tool for aligning sequencing reads 
+Description: Examples for bowtie2
+ An ultrafast and memory-efficient tool for aligning sequencing reads 
  to long reference sequences. It is particularly good at aligning reads 
  of about 50 up to 100s or 1,000s of characters, and particularly good 
  at aligning to relatively long (e.g. mammalian) genomes. 
diff --git a/debian/tests/control b/debian/tests/control
index a014edc..678cd4d 100644
--- a/debian/tests/control
+++ b/debian/tests/control
@@ -1 +1 @@
-Tests: indexing_ref_genome
+Tests: indexing-ref-genome
diff --git a/debian/tests/indexing_ref_genome b/debian/tests/indexing-ref-genome
similarity index 100%
rename from debian/tests/indexing_ref_genome
rename to debian/tests/indexing-ref-genome

-- 
ultrafast memory-efficient short read aligner