[med-svn] [SCM] samtools branch, master, updated. debian/0.1.18-1-31-g5761c3f

[Charles Plessy]

The following commit has been merged in the master branch:
commit e194f9e2527168ec4047c7242f0b8e31e5d1f3e1
Author: Charles Plessy <plessy at debian.org>
Date:   Sat Mar 30 16:20:42 2013 +0900

    Removed fix_float_tag.patch, corrected upstream.

diff --git a/debian/patches/fix_float_tag.patch b/debian/patches/fix_float_tag.patch
deleted file mode 100644
index 7760aac..0000000
--- a/debian/patches/fix_float_tag.patch
+++ /dev/null
@@ -1,16 +0,0 @@
-Description: Fix for bug"Float tags prevent opt() from finding later tags (KeyError instead of value of present tag)"
-Origin: http://code.google.com/p/pysam/issues/detail?id=71
-
-Index: samtools-0.1.18/bam.h
-===================================================================
---- samtools-0.1.18.orig/bam.h	2012-12-21 12:00:47.293615029 -0500
-+++ samtools-0.1.18/bam.h	2012-12-21 12:14:58.764541346 -0500
-@@ -755,7 +755,7 @@
- {
- 	if (x == 'C' || x == 'c' || x == 'A') return 1;
- 	else if (x == 'S' || x == 's') return 2;
--	else if (x == 'I' || x == 'i' || x == 'f') return 4;
-+	else if (x == 'I' || x == 'i' || x == 'f' || x == 'F') return 4;
- 	else return 0;
- }
- 
diff --git a/debian/patches/series b/debian/patches/series
index fa2fc87..7612864 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,4 +1,3 @@
 no-pileup-tests.patch
 fix_segfault_with_small_ref.patch
 fix_coverage_cap.patch
-fix_float_tag.patch

-- 
Processing of sequence alignments in SAM and BAM formats.