[med-svn] [SCM] tophat branch, master, updated. debian/2.0.6-1-12-g971ba31

[Alexandre Mestiashvili]

The following commit has been merged in the master branch:
commit 677ac6c9d8f846d01c6034282d36c8ca225f407b
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Tue May 7 22:54:06 2013 +0200

     - d/get-orig-source: fix tarball location
     - d/watch: take care about versions with letters

diff --git a/debian/get-orig-source b/debian/get-orig-source
index c766701..7d3bfa1 100755
--- a/debian/get-orig-source
+++ b/debian/get-orig-source
@@ -6,14 +6,14 @@ PKG=`dpkg-parsechangelog | awk '/^Source/ { print $2 }'`
 VERSION=`uscan --verbose --force-download | \
     grep "Newest version on remote site is .* local version is .*" | \
     head -n 1 | \
-    sed "s/Newest version on remote site is \([-0-9.]\+\),.*/\1/"`
+    sed "s/Newest version on remote site is \([-0-9.].*\),.*/\1/"`
 
 mkdir -p ../tarballs
 cd ../tarballs
 
 UPSTREAMNAME=tophat
 UPSTREAMDIR="${UPSTREAMNAME}-${VERSION}"
-tar -xzf ../${UPSTREAMDIR}.tar.gz
+tar -xzf ${UPSTREAMDIR}.tar.gz
 
 rm -rf ${UPSTREAMDIR}/src/SeqAn-1.3
 
diff --git a/debian/watch b/debian/watch
index 83e96d4..5af566e 100644
--- a/debian/watch
+++ b/debian/watch
@@ -1,3 +1,2 @@
 version=3
-http://tophat.cbcb.umd.edu/downloads/tophat-([-0-9\.]*)\.tar\.gz
-
+http://tophat.cbcb.umd.edu/downloads/tophat-([-0-9.]*\w?)\.tar\.gz

-- 
A spliced read mapper for RNA-Seq