[med-svn] r13600 - in trunk/packages/ffindex/trunk/debian: . patches

[Laszlo Kajan]

Author: lkajan
Date: 2013-05-16 13:24:13 +0000 (Thu, 16 May 2013)
New Revision: 13600

Modified:
   trunk/packages/ffindex/trunk/debian/changelog
   trunk/packages/ffindex/trunk/debian/patches/Makefile
   trunk/packages/ffindex/trunk/debian/patches/basename
Log:
0.9.9.1-1: New upstream release.

Modified: trunk/packages/ffindex/trunk/debian/changelog
===================================================================
--- trunk/packages/ffindex/trunk/debian/changelog	2013-05-16 13:12:23 UTC (rev 13599)
+++ trunk/packages/ffindex/trunk/debian/changelog	2013-05-16 13:24:13 UTC (rev 13600)
@@ -1,3 +1,9 @@
+ffindex (0.9.9.1-1) unstable; urgency=low
+
+  * New upstream release. Shared library sources did not change.
+
+ -- Laszlo Kajan <lkajan at rostlab.org>  Thu, 16 May 2013 14:40:05 +0200
+
 ffindex (0.9.9-2) unstable; urgency=low
 
   * Fixed 'bc' not found issue in d/rules (Closes: #696285).

Modified: trunk/packages/ffindex/trunk/debian/patches/Makefile
===================================================================
--- trunk/packages/ffindex/trunk/debian/patches/Makefile	2013-05-16 13:12:23 UTC (rev 13599)
+++ trunk/packages/ffindex/trunk/debian/patches/Makefile	2013-05-16 13:24:13 UTC (rev 13600)
@@ -63,7 +63,7 @@
  clean:
 -	rm -f ffindex.o ffutil.o ffindex_build ffindex_build.o ffindex_get ffindex_get.o libffindex.so libffindex.so.0.1 ffindex_modify ffindex_modify.o \
 -		libffindex.a  ffindex_from_fasta.o ffindex_from_fasta ffindex_apply_mpi.o ffindex_apply.o
-+	rm -f ffindex.o ffutil.o ffindex_build ffindex_build.o ffindex_get ffindex_get.o libffindex.so libffindex.so.$(SOMAJORV) libffindex.so.$(SOVERSION) ffindex_modify ffindex_modify.o \
++	rm -f ffindex.o ffutil.o ffindex_build ffindex_build.o ffindex_get ffindex_get.o libffindex.so libffindex.so.$(SOMAJORV).* libffindex.so.$(SOVERSION).* ffindex_modify ffindex_modify.o \
 +		libffindex.a  ffindex_from_fasta.o ffindex_from_fasta ffindex_apply_mpi.o ffindex_apply.o \
 +		$(OBJECTS) $(OBJECTS:%=%.o)
 +

Modified: trunk/packages/ffindex/trunk/debian/patches/basename
===================================================================
--- trunk/packages/ffindex/trunk/debian/patches/basename	2013-05-16 13:12:23 UTC (rev 13599)
+++ trunk/packages/ffindex/trunk/debian/patches/basename	2013-05-16 13:24:13 UTC (rev 13600)
@@ -24,9 +24,9 @@
    char *data_filename  = argv[1];
 --- a/src/ffindex_apply_mpi.c
 +++ b/src/ffindex_apply_mpi.c
-@@ -186,7 +186,7 @@
-     fprintf(stderr, "Not enough arguments %d.\n", optind - argn);
-     fprintf(stderr, "USAGE: %s -d DATA_FILENAME_OUT -i INDEX_FILENAME_OUT DATA_FILENAME INDEX_FILENAME -- PROGRAM [PROGRAM_ARGS]*\n"
+@@ -195,7 +195,7 @@
+                     "\t-m\tDo not merge the FFindex parts generated by the different MPI processes\n"
+                     "\t\tThis is useful for large MPI Jobs where merge time might be accounted.\n"
                      "\nDesigned and implemented by Andy Hauser <hauser at genzentrum.lmu.de>.\n",
 -                    argv[0]);
 +                    basename(argv[0]));