[med-svn] r13607 - in trunk/packages/metastudent/tags: . 1.0.8-2/debian
Laszlo Kajan
lkajan at alioth.debian.org
Thu May 16 16:28:21 UTC 2013
Author: lkajan
Date: 2013-05-16 16:28:21 +0000 (Thu, 16 May 2013)
New Revision: 13607
Added:
trunk/packages/metastudent/tags/1.0.8-2/
trunk/packages/metastudent/tags/1.0.8-2/debian/README.Debian
trunk/packages/metastudent/tags/1.0.8-2/debian/changelog
trunk/packages/metastudent/tags/1.0.8-2/debian/control
trunk/packages/metastudent/tags/1.0.8-2/debian/rules
Removed:
trunk/packages/metastudent/tags/1.0.8-2/debian/README.Debian
trunk/packages/metastudent/tags/1.0.8-2/debian/changelog
trunk/packages/metastudent/tags/1.0.8-2/debian/control
trunk/packages/metastudent/tags/1.0.8-2/debian/rules
Log:
[svn-buildpackage] Tagging metastudent 1.0.8-2
Deleted: trunk/packages/metastudent/tags/1.0.8-2/debian/README.Debian
===================================================================
--- trunk/packages/metastudent/trunk/debian/README.Debian 2013-05-16 15:15:39 UTC (rev 13605)
+++ trunk/packages/metastudent/tags/1.0.8-2/debian/README.Debian 2013-05-16 16:28:21 UTC (rev 13607)
@@ -1,5 +0,0 @@
-metastudent for Debian
-======================
-metastudent searches through large data files (~400M compressed) in order to predict gene ontology terms. These data files are available from [1], and are released under the GPL-2+. metastudent automatically downloads the data files from [1], in case they are not yet present on the host machine.
-
-[1] ftp://rostlab.org/metastudent/metastudent-data_[0-9.]+.tar.gz
Copied: trunk/packages/metastudent/tags/1.0.8-2/debian/README.Debian (from rev 13606, trunk/packages/metastudent/trunk/debian/README.Debian)
===================================================================
--- trunk/packages/metastudent/tags/1.0.8-2/debian/README.Debian (rev 0)
+++ trunk/packages/metastudent/tags/1.0.8-2/debian/README.Debian 2013-05-16 16:28:21 UTC (rev 13607)
@@ -0,0 +1,5 @@
+metastudent for Debian
+======================
+metastudent searches through large data files (>100M compressed) in order to predict gene ontology terms. These data files are available from the metastudent-data package or [1], and are released under the GPL-2+.
+
+[1] ftp://rostlab.org/metastudent/metastudent-data_[0-9.]+.tar.gz
Deleted: trunk/packages/metastudent/tags/1.0.8-2/debian/changelog
===================================================================
--- trunk/packages/metastudent/trunk/debian/changelog 2013-05-16 15:15:39 UTC (rev 13605)
+++ trunk/packages/metastudent/tags/1.0.8-2/debian/changelog 2013-05-16 16:28:21 UTC (rev 13607)
@@ -1,14 +0,0 @@
-metastudent (1.0.8-1.1) UNRELEASED; urgency=low
-
- * Non-maintainer upload.
- * NOT RELEASED YET
-
- -- Laszlo Kajan <lkajan at rostlab.org> Wed, 08 May 2013 17:23:51 +0200
-
-metastudent (1.0.8-1) unstable; urgency=low
-
- * Initial release (Closes: #705537)
- [Laszlo Kajan <lkajan at rostlab.org>]
- * Added BMC Bioinfo paper to d/upstream.
-
- -- Tobias Hamp <hampt at rostlab.org> Mon, 15 Apr 2013 12:08:13 +0100
Copied: trunk/packages/metastudent/tags/1.0.8-2/debian/changelog (from rev 13606, trunk/packages/metastudent/trunk/debian/changelog)
===================================================================
--- trunk/packages/metastudent/tags/1.0.8-2/debian/changelog (rev 0)
+++ trunk/packages/metastudent/tags/1.0.8-2/debian/changelog 2013-05-16 16:28:21 UTC (rev 13607)
@@ -0,0 +1,13 @@
+metastudent (1.0.8-2) unstable; urgency=low
+
+ * This version depends on data packaged as metastudent-data.
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Wed, 08 May 2013 17:23:51 +0200
+
+metastudent (1.0.8-1) unstable; urgency=low
+
+ * Initial release (Closes: #705537)
+ [Laszlo Kajan <lkajan at rostlab.org>]
+ * Added BMC Bioinfo paper to d/upstream.
+
+ -- Tobias Hamp <hampt at rostlab.org> Mon, 15 Apr 2013 12:08:13 +0100
Deleted: trunk/packages/metastudent/tags/1.0.8-2/debian/control
===================================================================
--- trunk/packages/metastudent/trunk/debian/control 2013-05-16 15:15:39 UTC (rev 13605)
+++ trunk/packages/metastudent/tags/1.0.8-2/debian/control 2013-05-16 16:28:21 UTC (rev 13607)
@@ -1,24 +0,0 @@
-Source: metastudent
-Section: science
-Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Tobias Hamp <hampt at rostlab.org>, Laszlo Kajan <lkajan at debian.org>
-Build-Depends-Indep: debhelper (>=8~), python-support (>= 0.6), python (>= 2.6), javahelper (>=0.25), default-jdk
-XS-Python-Version: >= 2.6
-Standards-Version: 3.9.4
-Homepage: https://rostlab.org/owiki/index.php/Metastudent
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/metastudent/trunk/
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/metastudent/trunk/
-
-Package: metastudent
-Architecture: all
-Homepage: http://www.rostlab.org
-Depends: ${misc:Depends}, ${perl:Depends}, ${python:Depends}, python (>= 2.6), blast2, default-jre, libgo-perl, libipc-run-perl, libgraphviz-perl, metastudent-data (>=1.0.1), perl
-Description: predictor of Gene Ontology terms from protein sequence
- Often, only the sequence of a protein is known, but
- not its functions. Metastudent will try to predict
- missing functional annotations through homology searches (BLAST).
- .
- All predicted functions correspond to Gene Ontology (GO)
- terms from the Molecular Function Ontology (MFO) and the Biological Process
- Ontology (BPO) and are associated with a reliability score.
Copied: trunk/packages/metastudent/tags/1.0.8-2/debian/control (from rev 13606, trunk/packages/metastudent/trunk/debian/control)
===================================================================
--- trunk/packages/metastudent/tags/1.0.8-2/debian/control (rev 0)
+++ trunk/packages/metastudent/tags/1.0.8-2/debian/control 2013-05-16 16:28:21 UTC (rev 13607)
@@ -0,0 +1,24 @@
+Source: metastudent
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Tobias Hamp <hampt at rostlab.org>, Laszlo Kajan <lkajan at rostlab.org>
+Build-Depends-Indep: debhelper (>=8~), python-support (>= 0.6), python (>= 2.6), javahelper (>=0.25), default-jdk
+XS-Python-Version: >= 2.6
+Standards-Version: 3.9.4
+Homepage: https://rostlab.org/owiki/index.php/Metastudent
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/metastudent/trunk/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/metastudent/trunk/
+
+Package: metastudent
+Architecture: all
+Homepage: http://www.rostlab.org
+Depends: ${misc:Depends}, ${perl:Depends}, ${python:Depends}, python (>= 2.6), blast2, default-jre, libgo-perl, libipc-run-perl, libgraphviz-perl, metastudent-data (>=1.0.1), perl
+Description: predictor of Gene Ontology terms from protein sequence
+ Often, only the sequence of a protein is known, but
+ not its functions. Metastudent will try to predict
+ missing functional annotations through homology searches (BLAST).
+ .
+ All predicted functions correspond to Gene Ontology (GO)
+ terms from the Molecular Function Ontology (MFO) and the Biological Process
+ Ontology (BPO) and are associated with a reliability score.
Deleted: trunk/packages/metastudent/tags/1.0.8-2/debian/rules
===================================================================
--- trunk/packages/metastudent/trunk/debian/rules 2013-05-16 15:15:39 UTC (rev 13605)
+++ trunk/packages/metastudent/tags/1.0.8-2/debian/rules 2013-05-16 16:28:21 UTC (rev 13607)
@@ -1,16 +0,0 @@
-#!/usr/bin/make -f
-# Uncomment this to turn on verbose mode.
-#export DH_VERBOSE=1
-
-JAVA_HOME=/usr/lib/jvm/default-java
-
-%:
- dh $@ --with javahelper
-
-override_dh_auto_clean:
- dh_auto_clean
- rm -f metastudent.1
-
-override_dh_auto_install:
- dh_auto_install
- find . -regex ".*/knn_weighted\|.*/CafaWrapper1\.pl\|.*/CafaWrapper2\.pl\|.*/CafaWrapper3\.pl\|.*/CafaWrapper3_new\.pl\|.*/exercise3\.pl\|.*/treehandler\.pl\|.*/validate\.pl" -exec chmod +x {} \;
Copied: trunk/packages/metastudent/tags/1.0.8-2/debian/rules (from rev 13606, trunk/packages/metastudent/trunk/debian/rules)
===================================================================
--- trunk/packages/metastudent/tags/1.0.8-2/debian/rules (rev 0)
+++ trunk/packages/metastudent/tags/1.0.8-2/debian/rules 2013-05-16 16:28:21 UTC (rev 13607)
@@ -0,0 +1,20 @@
+#!/usr/bin/make -f
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+JAVA_HOME=/usr/lib/jvm/default-java
+
+%:
+ dh $@ --with javahelper
+
+override_dh_auto_clean:
+ dh_auto_clean
+ rm -f metastudent.1
+
+override_dh_auto_install:
+ dh_auto_install
+ find . -regex ".*/knn_weighted\|.*/CafaWrapper1\.pl\|.*/CafaWrapper2\.pl\|.*/CafaWrapper3\.pl\|.*/CafaWrapper3_new\.pl\|.*/exercise3\.pl\|.*/treehandler\.pl\|.*/validate\.pl" -exec chmod +x {} \;
+
+get-orig-source:
+ mkdir -p ../tarballs
+ uscan --verbose --force-download --destdir=../tarballs
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