[med-svn] r13670 - in trunk/packages/circos/trunk/debian: . patches

[olivier sallou]

Author: osallou-guest
Date: 2013-05-20 07:19:13 +0000 (Mon, 20 May 2013)
New Revision: 13670

Added:
   trunk/packages/circos/trunk/debian/patches/fix_manpage
Modified:
   trunk/packages/circos/trunk/debian/changelog
   trunk/packages/circos/trunk/debian/patches/configpath_add_etc
   trunk/packages/circos/trunk/debian/patches/series
Log:
new upstream release

Modified: trunk/packages/circos/trunk/debian/changelog
===================================================================
--- trunk/packages/circos/trunk/debian/changelog	2013-05-20 00:18:19 UTC (rev 13669)
+++ trunk/packages/circos/trunk/debian/changelog	2013-05-20 07:19:13 UTC (rev 13670)
@@ -1,3 +1,9 @@
+circos (0.64-1) unstable; urgency=low
+
+  * New upstream release
+
+ -- Olivier Sallou <osallou at debian.org>  Mon, 20 May 2013 09:01:27 +0200
+
 circos (0.62.1-1) unstable; urgency=low
 
   * New upstream release 

Modified: trunk/packages/circos/trunk/debian/patches/configpath_add_etc
===================================================================
--- trunk/packages/circos/trunk/debian/patches/configpath_add_etc	2013-05-20 00:18:19 UTC (rev 13669)
+++ trunk/packages/circos/trunk/debian/patches/configpath_add_etc	2013-05-20 07:19:13 UTC (rev 13670)
@@ -4,25 +4,14 @@
 Forwarded: not-needed
 --- a/lib/Circos/Configuration.pm
 +++ b/lib/Circos/Configuration.pm
-@@ -591,6 +591,7 @@
+@@ -693,6 +693,7 @@
    }
-   
+ 
    my @configpath = (
 +										"/etc/circos",
  										dirname($file),
  										dirname($file)."/etc",
  										"$FindBin::RealBin/etc", 
---- a/lib/Circos/Utils.pm
-+++ b/lib/Circos/Utils.pm
-@@ -430,7 +430,7 @@
- 	}
- 
- 	# look for the file in various directories
--	my @dir_1 = (getcwd,$FindBin::RealBin);
-+	my @dir_1 = (getcwd,$FindBin::RealBin,"/usr/share/circos");
- 	my @dir_2 = qw(. .. ../.. ../../..);
- 	my @dir_3 = qw(. etc data);
- 	
 --- a/etc/makehuesteps
 +++ b/etc/makehuesteps
 @@ -1,4 +1,4 @@
@@ -31,3 +20,14 @@
  
  use strict;
  use Math::Round qw(round);
+--- a/lib/Circos/Utils.pm
++++ b/lib/Circos/Utils.pm
+@@ -441,7 +441,7 @@
+ 
+ 	# look for the file in various directories
+ 	# v0.63 added configuration directory to dir_1
+-	my @dir_1 = grep($_,getcwd,Circos::Configuration::fetch_conf("configdir"),$FindBin::RealBin);
++	my @dir_1 = grep($_,getcwd,Circos::Configuration::fetch_conf("configdir"),$FindBin::RealBin,"/usr/share/circos");
+ 	my @dir_2 = qw(. .. ../.. ../../..);
+ 	my @dir_3 = qw(. etc data);
+ 

Added: trunk/packages/circos/trunk/debian/patches/fix_manpage
===================================================================
--- trunk/packages/circos/trunk/debian/patches/fix_manpage	                        (rev 0)
+++ trunk/packages/circos/trunk/debian/patches/fix_manpage	2013-05-20 07:19:13 UTC (rev 13670)
@@ -0,0 +1,25 @@
+Subject: fix errors from pod2man result
+Description: Perl file used as source for man page contains errors.
+Author: Olivier Sallou <osallou at debian.org>
+Last-Updated: 2013-05-20
+Forwarded: No
+--- a/lib/Circos.pm
++++ b/lib/Circos.pm
+@@ -7,7 +7,7 @@
+ 
+ =head1 NAME
+ 
+-Circos - Circular data visualizations for comparison of genomes, among other things
++Circos  \- Circular data visualizations for comparison of genomes, among other things
+ 
+ =head1 SYNOPSIS
+ 
+@@ -6736,7 +6736,7 @@
+ 
+ =over
+ 
+-item * Hive plots 
++=item * Hive plots 
+ 
+ L<http://www.hiveplot.com>
+ 

Modified: trunk/packages/circos/trunk/debian/patches/series
===================================================================
--- trunk/packages/circos/trunk/debian/patches/series	2013-05-20 00:18:19 UTC (rev 13669)
+++ trunk/packages/circos/trunk/debian/patches/series	2013-05-20 07:19:13 UTC (rev 13670)
@@ -2,3 +2,4 @@
 debianpackaging
 configpath_add_etc
 fix_examples
+fix_manpage