[med-svn] r13699 - in trunk/packages/neobio/tags: . 0.0.20030929-1.1/debian
Gregor Herrmann
gregoa at alioth.debian.org
Wed May 22 17:00:21 UTC 2013
Author: gregoa
Date: 2013-05-22 17:00:20 +0000 (Wed, 22 May 2013)
New Revision: 13699
Added:
trunk/packages/neobio/tags/0.0.20030929-1.1/
trunk/packages/neobio/tags/0.0.20030929-1.1/debian/changelog
trunk/packages/neobio/tags/0.0.20030929-1.1/debian/control
trunk/packages/neobio/tags/0.0.20030929-1.1/debian/rules
Removed:
trunk/packages/neobio/tags/0.0.20030929-1.1/debian/changelog
trunk/packages/neobio/tags/0.0.20030929-1.1/debian/control
trunk/packages/neobio/tags/0.0.20030929-1.1/debian/rules
Log:
[svn-buildpackage] Tagging neobio 0.0.20030929-1.1
Deleted: trunk/packages/neobio/tags/0.0.20030929-1.1/debian/changelog
===================================================================
--- trunk/packages/neobio/trunk/debian/changelog 2013-05-22 13:13:45 UTC (rev 13697)
+++ trunk/packages/neobio/tags/0.0.20030929-1.1/debian/changelog 2013-05-22 17:00:20 UTC (rev 13699)
@@ -1,11 +0,0 @@
-neobio (0.0.20030929-2) UNRELEASED; urgency=low
-
- * Enhanced short description
-
- -- Andreas Tille <tille at debian.org> Wed, 30 May 2012 16:22:34 +0200
-
-neobio (0.0.20030929-1) unstable; urgency=low
-
- * Initial release (Closes: #647543)
-
- -- Christoph Gille <christophgil at googlemail.com> Wed, 30 May 2012 11:21:18 +0200
Copied: trunk/packages/neobio/tags/0.0.20030929-1.1/debian/changelog (from rev 13698, trunk/packages/neobio/trunk/debian/changelog)
===================================================================
--- trunk/packages/neobio/tags/0.0.20030929-1.1/debian/changelog (rev 0)
+++ trunk/packages/neobio/tags/0.0.20030929-1.1/debian/changelog 2013-05-22 17:00:20 UTC (rev 13699)
@@ -0,0 +1,25 @@
+neobio (0.0.20030929-1.1) unstable; urgency=low
+
+ [ Andreas Tille ]
+ * Enhanced short description
+
+ [ gregor herrmann ]
+ * Non-maintainer upload.
+ * Fix "Transition package to default java implementation":
+ apply patch from Ubuntu / James Page:
+
+ * Transition package to default java implementation:
+ - d/control: BD on default-jdk (>= 1:1.6), switch runtime dependency
+ to default-jre | java6-runtime.
+ - d/rules: Specify source/target = 1.5 to ensure that backwards
+ compatible bytecode is built.
+
+ (Closes: #684162)
+
+ -- gregor herrmann <gregoa at debian.org> Wed, 22 May 2013 18:53:39 +0200
+
+neobio (0.0.20030929-1) unstable; urgency=low
+
+ * Initial release (Closes: #647543)
+
+ -- Christoph Gille <christophgil at googlemail.com> Wed, 30 May 2012 11:21:18 +0200
Deleted: trunk/packages/neobio/tags/0.0.20030929-1.1/debian/control
===================================================================
--- trunk/packages/neobio/trunk/debian/control 2013-05-22 13:13:45 UTC (rev 13697)
+++ trunk/packages/neobio/tags/0.0.20030929-1.1/debian/control 2013-05-22 17:00:20 UTC (rev 13699)
@@ -1,21 +0,0 @@
-Source: neobio
-Section: science
-Priority: extra
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Christoph Gille <christophgil at googlemail.com>,
- Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 8), openjdk-6-jdk | sun-java6-jdk, javahelper (>=0.25)
-Standards-Version: 3.9.3
-Homepage: http://neobio.sourceforge.net/
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/neobio/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/neobio/trunk/
-
-Package: neobio
-Architecture: all
-Depends: openjdk-6-jre | sun-java6-jre, java-wrappers, ${misc:Depends}, ${java:Depends}
-Suggests: strap
-Enhances: strap
-Description: computes alignments of amino acid and nucleotide sequences
- Library and graphical user interface for pairwise sequence alignments.
- Implementation of the dynamic programming methods of Needleman & Wunsch
- (global alignment) and Smith & Waterman (local alignment).
Copied: trunk/packages/neobio/tags/0.0.20030929-1.1/debian/control (from rev 13698, trunk/packages/neobio/trunk/debian/control)
===================================================================
--- trunk/packages/neobio/tags/0.0.20030929-1.1/debian/control (rev 0)
+++ trunk/packages/neobio/tags/0.0.20030929-1.1/debian/control 2013-05-22 17:00:20 UTC (rev 13699)
@@ -0,0 +1,21 @@
+Source: neobio
+Section: science
+Priority: extra
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Christoph Gille <christophgil at googlemail.com>,
+ Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 8), default-jdk (>= 1:1.6), javahelper (>=0.25)
+Standards-Version: 3.9.3
+Homepage: http://neobio.sourceforge.net/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/neobio/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/neobio/trunk/
+
+Package: neobio
+Architecture: all
+Depends: default-jre | java6-runtime, java-wrappers, ${misc:Depends}, ${java:Depends}
+Suggests: strap
+Enhances: strap
+Description: computes alignments of amino acid and nucleotide sequences
+ Library and graphical user interface for pairwise sequence alignments.
+ Implementation of the dynamic programming methods of Needleman & Wunsch
+ (global alignment) and Smith & Waterman (local alignment).
Deleted: trunk/packages/neobio/tags/0.0.20030929-1.1/debian/rules
===================================================================
--- trunk/packages/neobio/trunk/debian/rules 2013-05-22 13:13:45 UTC (rev 13697)
+++ trunk/packages/neobio/tags/0.0.20030929-1.1/debian/rules 2013-05-22 17:00:20 UTC (rev 13699)
@@ -1,24 +0,0 @@
-#!/usr/bin/make -f
-# -*- makefile -*-
-
-# Uncomment this to turn on verbose mode.
-#export DH_VERBOSE=1
-
-VERSION := $(shell dpkg-parsechangelog | grep '^Version:' | sed 's/^Version: \(.*\)-1/\1/')
-
-%:
- dh $@ --with javahelper
-
-
-override_dh_auto_build:
- mkdir -p classes
- javac -cp src -d classes $(shell find src -name "*.java")
- jar -cf neobio-$(VERSION).jar -C classes neobio -C bin neobio/gui/icons
-
-override_dh_clean:
- rm -f neobio*.jar
- rm -rf classes
- dh_clean
-
-get-orig-source:
- . debian/get-orig-source
Copied: trunk/packages/neobio/tags/0.0.20030929-1.1/debian/rules (from rev 13698, trunk/packages/neobio/trunk/debian/rules)
===================================================================
--- trunk/packages/neobio/tags/0.0.20030929-1.1/debian/rules (rev 0)
+++ trunk/packages/neobio/tags/0.0.20030929-1.1/debian/rules 2013-05-22 17:00:20 UTC (rev 13699)
@@ -0,0 +1,24 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+VERSION := $(shell dpkg-parsechangelog | grep '^Version:' | sed 's/^Version: \(.*\)-1/\1/')
+
+%:
+ dh $@ --with javahelper
+
+
+override_dh_auto_build:
+ mkdir -p classes
+ javac -cp src -source 1.5 -target 1.5 -d classes $(shell find src -name "*.java")
+ jar -cf neobio-$(VERSION).jar -C classes neobio -C bin neobio/gui/icons
+
+override_dh_clean:
+ rm -f neobio*.jar
+ rm -rf classes
+ dh_clean
+
+get-orig-source:
+ . debian/get-orig-source
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