[med-svn] r13724 - in trunk/packages/logol/tags: . 1.6.2-1/debian
olivier sallou
osallou-guest at alioth.debian.org
Tue May 28 10:38:13 UTC 2013
Author: osallou-guest
Date: 2013-05-28 10:38:12 +0000 (Tue, 28 May 2013)
New Revision: 13724
Added:
trunk/packages/logol/tags/1.6.2-1/
trunk/packages/logol/tags/1.6.2-1/debian/changelog
trunk/packages/logol/tags/1.6.2-1/debian/control
trunk/packages/logol/tags/1.6.2-1/debian/docs
trunk/packages/logol/tags/1.6.2-1/debian/rules
trunk/packages/logol/tags/1.6.2-1/debian/watch
Removed:
trunk/packages/logol/tags/1.6.2-1/debian/changelog
trunk/packages/logol/tags/1.6.2-1/debian/control
trunk/packages/logol/tags/1.6.2-1/debian/docs
trunk/packages/logol/tags/1.6.2-1/debian/rules
trunk/packages/logol/tags/1.6.2-1/debian/watch
Log:
[svn-buildpackage] Tagging logol 1.6.2-1
Deleted: trunk/packages/logol/tags/1.6.2-1/debian/changelog
===================================================================
--- trunk/packages/logol/trunk/debian/changelog 2013-05-23 12:12:13 UTC (rev 13703)
+++ trunk/packages/logol/tags/1.6.2-1/debian/changelog 2013-05-28 10:38:12 UTC (rev 13724)
@@ -1,49 +0,0 @@
-logol (1.6.1-1) unstable; urgency=low
-
- * New upstream release (bug fixes)
-
- -- Olivier Sallou <osallou at debian.org> Tue, 09 Apr 2013 16:57:33 +0200
-
-logol (1.6.0-1) unstable; urgency=low
-
- * New upstream release with bug fixes
-
- -- Olivier Sallou <osallou at debian.org> Fri, 15 Feb 2013 10:05:50 +0100
-
-logol (1.5.0-6) unstable; urgency=low
-
- [ Olivier Sallou ]
- * debian/control: Fix typo in description (Closes: #685079).
- Thanks to Erik Esterer <erik.esterer at gmail.com>
-
- -- Olivier Sallou <osallou at debian.org> Fri, 17 Aug 2012 08:00:58 +0200
-
-logol (1.5.0-5) unstable; urgency=low
-
- [ Olivier Sallou]
- * Transition package to use default java implementation:
- From james.page at ubuntu.com (Closes: #684158)
- - d/control: BD on default-jdk (>= 1:1.6), switch runtime dependency
- to default-jre | java6-runtime.
- - d/rules: Specify source/target = 1.5 to ensure backwards compatible
- bytecode is built.
-
- -- Olivier Sallou <osallou at debian.org> Tue, 07 Aug 2012 15:18:43 +0200
-
-logol (1.5.0-4) unstable; urgency=low
-
- * debian/postinst: remove directory permissions (Closes: #683647).
-
- -- Olivier Sallou <osallou at debian.org> Thu, 02 Aug 2012 17:09:31 +0200
-
-logol (1.5.0-2) unstable; urgency=low
-
- * Support Arch dependent and arch independent separate builds.
-
- -- Olivier Sallou <osallou at debian.org> Sun, 01 Jul 2012 23:49:16 +0200
-
-logol (1.5.0-1) unstable; urgency=low
-
- * Initial release (Closes: #678373).
-
- -- Olivier Sallou <osallou at debian.org> Thu, 21 Jun 2012 12:50:22 +0200
Copied: trunk/packages/logol/tags/1.6.2-1/debian/changelog (from rev 13723, trunk/packages/logol/trunk/debian/changelog)
===================================================================
--- trunk/packages/logol/tags/1.6.2-1/debian/changelog (rev 0)
+++ trunk/packages/logol/tags/1.6.2-1/debian/changelog 2013-05-28 10:38:12 UTC (rev 13724)
@@ -0,0 +1,55 @@
+logol (1.6.2-1) unstable; urgency=low
+
+ * New upstream release (bug fixes)
+
+ -- Olivier Sallou <osallou at debian.org> Fri, 24 May 2013 14:37:24 +0200
+
+logol (1.6.1-1) unstable; urgency=low
+
+ * New upstream release (bug fixes)
+
+ -- Olivier Sallou <osallou at debian.org> Tue, 09 Apr 2013 16:57:33 +0200
+
+logol (1.6.0-1) unstable; urgency=low
+
+ * New upstream release with bug fixes
+
+ -- Olivier Sallou <osallou at debian.org> Fri, 15 Feb 2013 10:05:50 +0100
+
+logol (1.5.0-6) unstable; urgency=low
+
+ [ Olivier Sallou ]
+ * debian/control: Fix typo in description (Closes: #685079).
+ Thanks to Erik Esterer <erik.esterer at gmail.com>
+
+ -- Olivier Sallou <osallou at debian.org> Fri, 17 Aug 2012 08:00:58 +0200
+
+logol (1.5.0-5) unstable; urgency=low
+
+ [ Olivier Sallou]
+ * Transition package to use default java implementation:
+ From james.page at ubuntu.com (Closes: #684158)
+ - d/control: BD on default-jdk (>= 1:1.6), switch runtime dependency
+ to default-jre | java6-runtime.
+ - d/rules: Specify source/target = 1.5 to ensure backwards compatible
+ bytecode is built.
+
+ -- Olivier Sallou <osallou at debian.org> Tue, 07 Aug 2012 15:18:43 +0200
+
+logol (1.5.0-4) unstable; urgency=low
+
+ * debian/postinst: remove directory permissions (Closes: #683647).
+
+ -- Olivier Sallou <osallou at debian.org> Thu, 02 Aug 2012 17:09:31 +0200
+
+logol (1.5.0-2) unstable; urgency=low
+
+ * Support Arch dependent and arch independent separate builds.
+
+ -- Olivier Sallou <osallou at debian.org> Sun, 01 Jul 2012 23:49:16 +0200
+
+logol (1.5.0-1) unstable; urgency=low
+
+ * Initial release (Closes: #678373).
+
+ -- Olivier Sallou <osallou at debian.org> Thu, 21 Jun 2012 12:50:22 +0200
Deleted: trunk/packages/logol/tags/1.6.2-1/debian/control
===================================================================
--- trunk/packages/logol/trunk/debian/control 2013-05-23 12:12:13 UTC (rev 13703)
+++ trunk/packages/logol/tags/1.6.2-1/debian/control 2013-05-28 10:38:12 UTC (rev 13724)
@@ -1,38 +0,0 @@
-Source: logol
-Section: science
-Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Olivier Sallou <osallou at debian.org>
-DM-Upload-Allowed: yes
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/logol/trunk/
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/logol/trunk/
-Build-Depends: debhelper (>= 8.0.0),default-jdk (>= 1:1.6),ant,ruby (>=1.8),rubygems, gawk, swi-prolog,
- libbiojava-java, libdrmaa-java, antlr3, libcommons-cli-java, libcommons-collections3-java, libcommons-configuration-java,
- libcommons-lang-java, libcommons-logging-java, libxalan2-java, libxerces2-java, junit4, libgnumail-java,
- liblog4j1.2-java,texlive, tex4ht, libncursesw5-dev, ruby-cassiopee, ant-optional
-Standards-Version: 3.9.3
-Homepage: http://logol.genouest.org
-
-Package: logol
-Architecture: all
-Depends: ${shlibs:Depends}, ${misc:Depends}, default-jre | java6-runtime, ruby (>=1.8),rubygems, gawk,
- libbiojava-java, libdrmaa-java, antlr3, libcommons-cli-java, libcommons-collections3-java, libcommons-configuration-java,
- libcommons-lang-java, libcommons-logging-java, libxalan2-java, libxerces2-java, libgnumail-java, liblog4j1.2-java,
- ruby-cassiopee, logol-bin
-Description: Pattern matching tool using Logol language
- Logol is a pattern matching tool using the Logol language.
- It searches with a specific grammar a pattern in small
- or large sequence (dna, rna, protein). It provides complete
- result matching with the original grammar in the results.
-
-Package: logol-bin
-Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}, swi-prolog, libncursesw5
-Description: Pattern matching tool using Logol language
- This package contains the Prolog binaries used by Logol to parse
- the sequence and match the grammar.
- .
- Logol is a pattern matching tool using the Logol language.
- It searches with a specific grammar a pattern in small
- or large sequence (dna, rna, protein). It provides complete
- result matching with the original grammar in the results.
Copied: trunk/packages/logol/tags/1.6.2-1/debian/control (from rev 13722, trunk/packages/logol/trunk/debian/control)
===================================================================
--- trunk/packages/logol/tags/1.6.2-1/debian/control (rev 0)
+++ trunk/packages/logol/tags/1.6.2-1/debian/control 2013-05-28 10:38:12 UTC (rev 13724)
@@ -0,0 +1,38 @@
+Source: logol
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Olivier Sallou <osallou at debian.org>
+DM-Upload-Allowed: yes
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/logol/trunk/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/logol/trunk/
+Build-Depends: debhelper (>= 8.0.0),default-jdk (>= 1:1.6),ant,ruby (>=1.8),rubygems, gawk, swi-prolog (>=6.2.6-3),
+ libbiojava-java, libdrmaa-java, antlr3, libcommons-cli-java, libcommons-collections3-java, libcommons-configuration-java,
+ libcommons-lang-java, libcommons-logging-java, libxalan2-java, libxerces2-java, junit4, libgnumail-java,
+ liblog4j1.2-java,texlive, tex4ht, libncursesw5-dev, ruby-cassiopee, ant-optional
+Standards-Version: 3.9.3
+Homepage: http://logol.genouest.org
+
+Package: logol
+Architecture: all
+Depends: ${shlibs:Depends}, ${misc:Depends}, default-jre | java6-runtime, ruby (>=1.8),rubygems, gawk,
+ libbiojava-java, libdrmaa-java, antlr3, libcommons-cli-java, libcommons-collections3-java, libcommons-configuration-java,
+ libcommons-lang-java, libcommons-logging-java, libxalan2-java, libxerces2-java, libgnumail-java, liblog4j1.2-java,
+ ruby-cassiopee, logol-bin
+Description: Pattern matching tool using Logol language
+ Logol is a pattern matching tool using the Logol language.
+ It searches with a specific grammar a pattern in small
+ or large sequence (dna, rna, protein). It provides complete
+ result matching with the original grammar in the results.
+
+Package: logol-bin
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}, swi-prolog(>=6.2.6-3), libncursesw5
+Description: Pattern matching tool using Logol language
+ This package contains the Prolog binaries used by Logol to parse
+ the sequence and match the grammar.
+ .
+ Logol is a pattern matching tool using the Logol language.
+ It searches with a specific grammar a pattern in small
+ or large sequence (dna, rna, protein). It provides complete
+ result matching with the original grammar in the results.
Deleted: trunk/packages/logol/tags/1.6.2-1/debian/docs
===================================================================
--- trunk/packages/logol/trunk/debian/docs 2013-05-23 12:12:13 UTC (rev 13703)
+++ trunk/packages/logol/tags/1.6.2-1/debian/docs 2013-05-28 10:38:12 UTC (rev 13724)
@@ -1,8 +0,0 @@
-changelog
-README.txt
-prolog/SWI-README
-Doc/LogolGrammar.txt
-Doc/tutorial.pdf
-Doc/logol-usage.pdf
-# Not available, requires antlrworks for generation
-#Doc/logol-grammar.pdf
Copied: trunk/packages/logol/tags/1.6.2-1/debian/docs (from rev 13704, trunk/packages/logol/trunk/debian/docs)
===================================================================
--- trunk/packages/logol/tags/1.6.2-1/debian/docs (rev 0)
+++ trunk/packages/logol/tags/1.6.2-1/debian/docs 2013-05-28 10:38:12 UTC (rev 13724)
@@ -0,0 +1,9 @@
+changelog
+README.txt
+prolog/SWI-README
+Doc/LogolGrammar.txt
+Doc/tutorial.pdf
+Doc/logol-usage.pdf
+Doc/logolParser.pdf
+# Not available, requires antlrworks for generation
+#Doc/logol-grammar.pdf
Deleted: trunk/packages/logol/tags/1.6.2-1/debian/rules
===================================================================
--- trunk/packages/logol/trunk/debian/rules 2013-05-23 12:12:13 UTC (rev 13703)
+++ trunk/packages/logol/tags/1.6.2-1/debian/rules 2013-05-28 10:38:12 UTC (rev 13724)
@@ -1,46 +0,0 @@
-#!/usr/bin/make -f
-# -*- makefile -*-
-
-# Uncomment this to turn on verbose mode.
-#export DH_VERBOSE=1
-
-DEB_ANT_BUILD_TARGET=create-jar,test_swi
-DEB_ANT_ARGS=-Dant.build.javac.source=1.5 -Dant.build.javac.target=1.5
-
-%:
- dh $@
-
-override_dh_auto_build:
- dh_auto_build -- $(DEB_ANT_ARGS)
-
-override_dh_install:
- dh_install
- rm -f debian/logol/usr/share/logol/prolog/*.c
- rm -f debian/logol/usr/share/logol/prolog/*.exe
- rm -f debian/logol/usr/share/logol/prolog/logol.properties
- if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/*.sh; fi
- if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/*.sh; fi
- if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/*.rb; fi
- if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/mycostfunction; fi
- # Not available, requires pldoc, not currently available in Debian SWI-Prolog
- #cp Doc/logolParser.pdf debian/logol/usr/share/doc/logol/
-
-override_dh_clean:
- dh_clean
- rm -f Swi*.xml
- rm -f prolog/*.exe
- rm -f lib/*.jar
- rm -f *.log
- rm -f src/org/irisa/genouest/logol/parser/*
- rm -f tools/suffixSearch.sh
-
-override_dh_installexamples:
- rm -f test/tmp/*
- rm -f test/results/*
- dh_installexamples
-
-override_dh_strip:
- dh_strip -Xlogol.exe -Xpreanalyse.exe
-
-get-orig-source:
- debian/get-orig-source.sh
Copied: trunk/packages/logol/tags/1.6.2-1/debian/rules (from rev 13704, trunk/packages/logol/trunk/debian/rules)
===================================================================
--- trunk/packages/logol/tags/1.6.2-1/debian/rules (rev 0)
+++ trunk/packages/logol/tags/1.6.2-1/debian/rules 2013-05-28 10:38:12 UTC (rev 13724)
@@ -0,0 +1,47 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+DEB_ANT_BUILD_TARGET=create-jar,test_swi
+DEB_ANT_ARGS=-Dant.build.javac.source=1.5 -Dant.build.javac.target=1.5
+
+%:
+ dh $@
+
+override_dh_auto_build:
+ dh_auto_build -- $(DEB_ANT_ARGS)
+ ant -f build.xml doc
+
+override_dh_install:
+ dh_install
+ rm -f debian/logol/usr/share/logol/prolog/*.c
+ rm -f debian/logol/usr/share/logol/prolog/*.exe
+ rm -f debian/logol/usr/share/logol/prolog/logol.properties
+ if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/*.sh; fi
+ if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/*.sh; fi
+ if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/*.rb; fi
+ if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/mycostfunction; fi
+ # Not available, requires pldoc, not currently available in Debian SWI-Prolog
+ #cp Doc/logolParser.pdf debian/logol/usr/share/doc/logol/
+
+override_dh_clean:
+ dh_clean
+ rm -f Swi*.xml
+ rm -f prolog/*.exe
+ rm -f lib/*.jar
+ rm -f *.log
+ rm -f src/org/irisa/genouest/logol/parser/*
+ rm -f tools/suffixSearch.sh
+
+override_dh_installexamples:
+ rm -f test/tmp/*
+ rm -f test/results/*
+ dh_installexamples
+
+override_dh_strip:
+ dh_strip -Xlogol.exe -Xpreanalyse.exe
+
+get-orig-source:
+ debian/get-orig-source.sh
Deleted: trunk/packages/logol/tags/1.6.2-1/debian/watch
===================================================================
--- trunk/packages/logol/trunk/debian/watch 2013-05-23 12:12:13 UTC (rev 13703)
+++ trunk/packages/logol/tags/1.6.2-1/debian/watch 2013-05-28 10:38:12 UTC (rev 13724)
@@ -1,2 +0,0 @@
-version=3
-https://gforge.inria.fr/frs/?group_id=1318 .*/logol-(\d[\d.-]+)\.tar\.bz2
Copied: trunk/packages/logol/tags/1.6.2-1/debian/watch (from rev 13722, trunk/packages/logol/trunk/debian/watch)
===================================================================
--- trunk/packages/logol/tags/1.6.2-1/debian/watch (rev 0)
+++ trunk/packages/logol/tags/1.6.2-1/debian/watch 2013-05-28 10:38:12 UTC (rev 13724)
@@ -0,0 +1,2 @@
+version=3
+https://gforge.inria.fr/frs/?group_id=1318 .*/logol_(\d[\d.-]+)\.orig\.tar\.bz2
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