[med-svn] r15181 - in trunk/packages/biomaj/tags: . 1.2.3-2/debian
olivier sallou
osallou-guest at alioth.debian.org
Sun Nov 10 08:00:16 UTC 2013
Author: osallou-guest
Date: 2013-11-10 08:00:16 +0000 (Sun, 10 Nov 2013)
New Revision: 15181
Added:
trunk/packages/biomaj/tags/1.2.3-2/
trunk/packages/biomaj/tags/1.2.3-2/debian/changelog
trunk/packages/biomaj/tags/1.2.3-2/debian/config
trunk/packages/biomaj/tags/1.2.3-2/debian/control
Removed:
trunk/packages/biomaj/tags/1.2.3-2/debian/changelog
trunk/packages/biomaj/tags/1.2.3-2/debian/config
trunk/packages/biomaj/tags/1.2.3-2/debian/control
Log:
[svn-buildpackage] Tagging biomaj 1.2.3-2
Deleted: trunk/packages/biomaj/tags/1.2.3-2/debian/changelog
===================================================================
--- trunk/packages/biomaj/trunk/debian/changelog 2013-11-06 05:20:56 UTC (rev 15118)
+++ trunk/packages/biomaj/tags/1.2.3-2/debian/changelog 2013-11-10 08:00:16 UTC (rev 15181)
@@ -1,183 +0,0 @@
-biomaj (1.2.3-1) unstable; urgency=low
-
- * New upstream release (fixes on local storage and stage option).
-
- -- Olivier Sallou <osallou at debian.org> Wed, 30 Oct 2013 15:34:34 +0100
-
-biomaj (1.2.2-2) unstable; urgency=low
-
- * d/postinst: Fix install in noninteractive mode (Closes: #721773).
-
- -- Olivier Sallou <osallou at debian.org> Fri, 30 Aug 2013 12:11:50 +0200
-
-biomaj (1.2.2-1) unstable; urgency=low
-
- * New upstream release with minor fixes
- d/patches/series: upstream bug 15914 fixed.
-
- -- Olivier Sallou <osallou at debian.org> Tue, 18 Jun 2013 14:30:28 +0200
-
-biomaj (1.2.1-3) unstable; urgency=low
-
- * Add patch to manage ant properties api change (Closes: #712328).
-
- -- Olivier Sallou <osallou at debian.org> Tue, 18 Jun 2013 11:39:36 +0200
-
-biomaj (1.2.1-2) unstable; urgency=low
-
- * Add patch to match libjgoodies-form-java >1.3,
- FormFactory replaced by FormSpecs (Closes: #708454)
- d/control: Depends on libjgoodies-form-java > 1.3
-
- -- Olivier Sallou <osallou at debian.org> Sun, 19 May 2013 13:21:55 +0200
-
-biomaj (1.2.1-1) unstable; urgency=low
-
- * New usptream release
- * Add Japanase debconf translation (Closes: #690698)
- Thanks to victory <victory.deb at gmail.com>
-
- -- Olivier Sallou <osallou at debian.org> Fri, 19 Oct 2012 17:04:19 +0200
-
-biomaj (1.2.0-10) unstable; urgency=low
-
- * debian/rules, debian/postinst: fix permissions on
- properties file.
-
- -- Olivier Sallou <osallou at debian.org> Thu, 04 Oct 2012 18:34:01 +0200
-
-biomaj (1.2.0-9) unstable; urgency=low
-
- * debian/patches/set_env_file_for_debian:
- Prevent env.sh file update by program at install
- (Closes: #688433)
-
- -- Olivier Sallou <osallou at debian.org> Wed, 03 Oct 2012 13:54:44 +0200
-
-biomaj (1.2.0-8) unstable; urgency=low
-
- [ Olivier Sallou ]
- * debian/copyright: Fix copyright URL
- * debian/control: Switch to Standards 3.9.4
- * debian/rules, debian/postinst, debian/postrm: fix conffile update
- conflicting with Debian Policy (Closes: #688433).
-
- -- Olivier Sallou <osallou at debian.org> Wed, 01 Aug 2012 15:59:55 +0200
-
-biomaj (1.2.0-7) unstable; urgency=low
-
- [ Olivier Sallou ]
- Patch from James Page <james.page at ubuntu.com> (Closes: #683517)
- * Transition package to use default java implementation:
- - d/rules: Specify source/target = 1.5 to ensure bytecode is backwards
- compatible.
- - d/control: BD on default-jdk only. Switch runtime dependency to
- default-jre | java6-runtime.
-
- -- Olivier Sallou <osallou at debian.org> Wed, 01 Aug 2012 14:58:41 +0200
-
-biomaj (1.2.0-6) unstable; urgency=low
-
- [ Olivier Sallou ]
- * Clean files for purge (Closes: #678490).
-
- [ Andreas Tille ]
- * debian/upstream: Enhance upstream information (authors format, missing
- fields)
-
- [Debconf translation updates]
- * French (Olivier Sallou, proofread by the French l10n team).
-
- -- Olivier Sallou <osallou at debian.org> Tue, 08 May 2012 22:46:34 +0200
-
-biomaj (1.2.0-5) unstable; urgency=low
-
- * Add missing file to package to get the console help (Closes: #658833)
- - biomaj.install
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 01 Feb 2012 10:00:03 +0100
-
-biomaj (1.2.0-4) unstable; urgency=low
-
- * [Olivier Sallou]
- * config: remove biomaj/jdk_home, not needed anymore
-
- * Debconf templates and debian/control reviewed by the debian-l10n-
- english team as part of the Smith review project. Closes: #653408
- * [Debconf translation updates]
- * Russian (Yuri Kozlov). Closes: #656111
- * Italian (Francesca Ciceri). Closes: #656254
- * French (Olivier Sallou). Closes: #656066
- * Czech (Michal Simunek). Closes: #656670
- * Dutch; (Jeroen Schot). Closes: #657009
- * German (Chris Leick). Closes: #657024
- * Danish (Joe Hansen). Closes: #657341
- * Indonesian (Mahyuddin Susanto). Closes: #657463
- * Spanish; (Camaleón). Closes: #657491
- * Polish (Michał Kułach). Closes: #657512
- * Swedish (Martin Bagge / brother). Closes: #657548
- * Portuguese (Miguel Figueiredo). Closes: #657664
-
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Fri, 16 Dec 2011 15:53:10 +0100
-
-biomaj (1.2.0-3) unstable; urgency=low
-
- * Add Portuguese translation for debconf (Closes: #651680)
- - Thanks to Pedro Ribeiro <p.m42.ribeiro at gmail.com>
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Fri, 16 Dec 2011 09:25:22 +0100
-
-biomaj (1.2.0-2) unstable; urgency=low
-
- * Fix Mysql dependency name.
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Fri, 11 Nov 2011 10:25:39 +0100
-
-biomaj (1.2.0-1) unstable; urgency=low
-
- * New upstream release with new features and bug fixes.
- * Change in database model, migration script ran at install
- * New post processes added in default install (emboss)
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Thu, 18 Aug 2011 09:55:23 +0200
-
-biomaj (1.1.0-3) unstable; urgency=low
-
- * Change priority in debconf message for jdk home
- * Add spanish translation of debconf:
- Thanks to Camaleón <noelamac at gmail.com>
- Closes: #632952
- * Add sweden translation of debconf:
- Thanks to Martin Bagge <brother at bsnet.se>
- Closes: #628927
- * Add german translation of debconf:
- Thanks to Chris Leick <c.leick at vollbio.de>
- Closes: #629455
- * Change openjdk dependency to add default-jdk and sun jdk possible depends
- Closes: #633523
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Thu, 11 Jul 2011 09:55:23 +0200
-
-biomaj (1.1.0-2) unstable; urgency=low
-
- * Add russian translation of debconf:
- Thanks to Yuri Kozlov <yuray at komyakino.ru>
- Closes: #623807
- * debian/patches/fix623558_remove_pid:
- Remove unnecessary pid file creation
- Closes: #623558
- * debian/postrm,debian/preinst:
- Issue for smooth upgrade, require old package
- removal then new package install
- Closes: #624284
-
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Fri, 22 Apr 2011 16:27:11 +0200
-
-biomaj (1.1.0-1) unstable; urgency=low
-
- * Initial release (Closes: #609038)
- First Debian package, fixed copyright file to list all licenses
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 05 Jan 2011 10:39:00 +0100
Copied: trunk/packages/biomaj/tags/1.2.3-2/debian/changelog (from rev 15180, trunk/packages/biomaj/trunk/debian/changelog)
===================================================================
--- trunk/packages/biomaj/tags/1.2.3-2/debian/changelog (rev 0)
+++ trunk/packages/biomaj/tags/1.2.3-2/debian/changelog 2013-11-10 08:00:16 UTC (rev 15181)
@@ -0,0 +1,190 @@
+biomaj (1.2.3-2) unstable; urgency=low
+
+ * d/control: Fix browse url for svn
+ d/config: Fix test for non-interactive mode
+
+ -- Olivier Sallou <osallou at debian.org> Wed, 06 Nov 2013 09:51:55 +0100
+
+biomaj (1.2.3-1) unstable; urgency=low
+
+ * New upstream release (fixes on local storage and stage option).
+
+ -- Olivier Sallou <osallou at debian.org> Wed, 30 Oct 2013 15:34:34 +0100
+
+biomaj (1.2.2-2) unstable; urgency=low
+
+ * d/postinst: Fix install in noninteractive mode (Closes: #721773).
+
+ -- Olivier Sallou <osallou at debian.org> Fri, 30 Aug 2013 12:11:50 +0200
+
+biomaj (1.2.2-1) unstable; urgency=low
+
+ * New upstream release with minor fixes
+ d/patches/series: upstream bug 15914 fixed.
+
+ -- Olivier Sallou <osallou at debian.org> Tue, 18 Jun 2013 14:30:28 +0200
+
+biomaj (1.2.1-3) unstable; urgency=low
+
+ * Add patch to manage ant properties api change (Closes: #712328).
+
+ -- Olivier Sallou <osallou at debian.org> Tue, 18 Jun 2013 11:39:36 +0200
+
+biomaj (1.2.1-2) unstable; urgency=low
+
+ * Add patch to match libjgoodies-form-java >1.3,
+ FormFactory replaced by FormSpecs (Closes: #708454)
+ d/control: Depends on libjgoodies-form-java > 1.3
+
+ -- Olivier Sallou <osallou at debian.org> Sun, 19 May 2013 13:21:55 +0200
+
+biomaj (1.2.1-1) unstable; urgency=low
+
+ * New usptream release
+ * Add Japanase debconf translation (Closes: #690698)
+ Thanks to victory <victory.deb at gmail.com>
+
+ -- Olivier Sallou <osallou at debian.org> Fri, 19 Oct 2012 17:04:19 +0200
+
+biomaj (1.2.0-10) unstable; urgency=low
+
+ * debian/rules, debian/postinst: fix permissions on
+ properties file.
+
+ -- Olivier Sallou <osallou at debian.org> Thu, 04 Oct 2012 18:34:01 +0200
+
+biomaj (1.2.0-9) unstable; urgency=low
+
+ * debian/patches/set_env_file_for_debian:
+ Prevent env.sh file update by program at install
+ (Closes: #688433)
+
+ -- Olivier Sallou <osallou at debian.org> Wed, 03 Oct 2012 13:54:44 +0200
+
+biomaj (1.2.0-8) unstable; urgency=low
+
+ [ Olivier Sallou ]
+ * debian/copyright: Fix copyright URL
+ * debian/control: Switch to Standards 3.9.4
+ * debian/rules, debian/postinst, debian/postrm: fix conffile update
+ conflicting with Debian Policy (Closes: #688433).
+
+ -- Olivier Sallou <osallou at debian.org> Wed, 01 Aug 2012 15:59:55 +0200
+
+biomaj (1.2.0-7) unstable; urgency=low
+
+ [ Olivier Sallou ]
+ Patch from James Page <james.page at ubuntu.com> (Closes: #683517)
+ * Transition package to use default java implementation:
+ - d/rules: Specify source/target = 1.5 to ensure bytecode is backwards
+ compatible.
+ - d/control: BD on default-jdk only. Switch runtime dependency to
+ default-jre | java6-runtime.
+
+ -- Olivier Sallou <osallou at debian.org> Wed, 01 Aug 2012 14:58:41 +0200
+
+biomaj (1.2.0-6) unstable; urgency=low
+
+ [ Olivier Sallou ]
+ * Clean files for purge (Closes: #678490).
+
+ [ Andreas Tille ]
+ * debian/upstream: Enhance upstream information (authors format, missing
+ fields)
+
+ [Debconf translation updates]
+ * French (Olivier Sallou, proofread by the French l10n team).
+
+ -- Olivier Sallou <osallou at debian.org> Tue, 08 May 2012 22:46:34 +0200
+
+biomaj (1.2.0-5) unstable; urgency=low
+
+ * Add missing file to package to get the console help (Closes: #658833)
+ - biomaj.install
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 01 Feb 2012 10:00:03 +0100
+
+biomaj (1.2.0-4) unstable; urgency=low
+
+ * [Olivier Sallou]
+ * config: remove biomaj/jdk_home, not needed anymore
+
+ * Debconf templates and debian/control reviewed by the debian-l10n-
+ english team as part of the Smith review project. Closes: #653408
+ * [Debconf translation updates]
+ * Russian (Yuri Kozlov). Closes: #656111
+ * Italian (Francesca Ciceri). Closes: #656254
+ * French (Olivier Sallou). Closes: #656066
+ * Czech (Michal Simunek). Closes: #656670
+ * Dutch; (Jeroen Schot). Closes: #657009
+ * German (Chris Leick). Closes: #657024
+ * Danish (Joe Hansen). Closes: #657341
+ * Indonesian (Mahyuddin Susanto). Closes: #657463
+ * Spanish; (Camaleón). Closes: #657491
+ * Polish (Michał Kułach). Closes: #657512
+ * Swedish (Martin Bagge / brother). Closes: #657548
+ * Portuguese (Miguel Figueiredo). Closes: #657664
+
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Fri, 16 Dec 2011 15:53:10 +0100
+
+biomaj (1.2.0-3) unstable; urgency=low
+
+ * Add Portuguese translation for debconf (Closes: #651680)
+ - Thanks to Pedro Ribeiro <p.m42.ribeiro at gmail.com>
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Fri, 16 Dec 2011 09:25:22 +0100
+
+biomaj (1.2.0-2) unstable; urgency=low
+
+ * Fix Mysql dependency name.
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Fri, 11 Nov 2011 10:25:39 +0100
+
+biomaj (1.2.0-1) unstable; urgency=low
+
+ * New upstream release with new features and bug fixes.
+ * Change in database model, migration script ran at install
+ * New post processes added in default install (emboss)
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Thu, 18 Aug 2011 09:55:23 +0200
+
+biomaj (1.1.0-3) unstable; urgency=low
+
+ * Change priority in debconf message for jdk home
+ * Add spanish translation of debconf:
+ Thanks to Camaleón <noelamac at gmail.com>
+ Closes: #632952
+ * Add sweden translation of debconf:
+ Thanks to Martin Bagge <brother at bsnet.se>
+ Closes: #628927
+ * Add german translation of debconf:
+ Thanks to Chris Leick <c.leick at vollbio.de>
+ Closes: #629455
+ * Change openjdk dependency to add default-jdk and sun jdk possible depends
+ Closes: #633523
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Thu, 11 Jul 2011 09:55:23 +0200
+
+biomaj (1.1.0-2) unstable; urgency=low
+
+ * Add russian translation of debconf:
+ Thanks to Yuri Kozlov <yuray at komyakino.ru>
+ Closes: #623807
+ * debian/patches/fix623558_remove_pid:
+ Remove unnecessary pid file creation
+ Closes: #623558
+ * debian/postrm,debian/preinst:
+ Issue for smooth upgrade, require old package
+ removal then new package install
+ Closes: #624284
+
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Fri, 22 Apr 2011 16:27:11 +0200
+
+biomaj (1.1.0-1) unstable; urgency=low
+
+ * Initial release (Closes: #609038)
+ First Debian package, fixed copyright file to list all licenses
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 05 Jan 2011 10:39:00 +0100
Deleted: trunk/packages/biomaj/tags/1.2.3-2/debian/config
===================================================================
--- trunk/packages/biomaj/trunk/debian/config 2013-11-06 05:20:56 UTC (rev 15118)
+++ trunk/packages/biomaj/tags/1.2.3-2/debian/config 2013-11-10 08:00:16 UTC (rev 15181)
@@ -1,31 +0,0 @@
-#!/bin/sh
-
-set -e
-
-# Source debconf library.
-. /usr/share/debconf/confmodule
-
-# jdk_home
-#db_input low biomaj/jdk_home || true
-#db_go
-
-
-# Configure mysql ?
- db_input critical biomaj/mysql || true
- db_go
- db_get biomaj/mysql
- if [ $RET = "true" ]; then
- # MySQL server
- db_input critical biomaj/mysql_host || true
- db_go
-
- # MySQL login
- db_input critical biomaj/mysql_login || true
- db_go
-
- # MySQL password
- db_input critical biomaj/mysql_passwd || true
- db_go
- fi
-
-
Copied: trunk/packages/biomaj/tags/1.2.3-2/debian/config (from rev 15180, trunk/packages/biomaj/trunk/debian/config)
===================================================================
--- trunk/packages/biomaj/tags/1.2.3-2/debian/config (rev 0)
+++ trunk/packages/biomaj/tags/1.2.3-2/debian/config 2013-11-10 08:00:16 UTC (rev 15181)
@@ -0,0 +1,31 @@
+#!/bin/sh
+
+set -e
+
+# Source debconf library.
+. /usr/share/debconf/confmodule
+
+# jdk_home
+#db_input low biomaj/jdk_home || true
+#db_go
+
+
+# Configure mysql ?
+ db_input critical biomaj/mysql || true
+ db_go
+ db_get biomaj/mysql
+ if [ "$RET" = "true" ]; then
+ # MySQL server
+ db_input critical biomaj/mysql_host || true
+ db_go
+
+ # MySQL login
+ db_input critical biomaj/mysql_login || true
+ db_go
+
+ # MySQL password
+ db_input critical biomaj/mysql_passwd || true
+ db_go
+ fi
+
+
Deleted: trunk/packages/biomaj/tags/1.2.3-2/debian/control
===================================================================
--- trunk/packages/biomaj/trunk/debian/control 2013-11-06 05:20:56 UTC (rev 15118)
+++ trunk/packages/biomaj/tags/1.2.3-2/debian/control 2013-11-10 08:00:16 UTC (rev 15181)
@@ -1,43 +0,0 @@
-Source: biomaj
-Section: science
-Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Olivier Sallou <osallou at debian.org>
-Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/biomaj/trunk/
-Vcs-Browser: http://anonsvn.debian.org/viewvc/debian-med/trunk/packages/biomaj/trunk/
-Homepage: http://biomaj.genouest.org
-Build-Depends: debhelper (>= 7.1)
-Build-Depends-Indep: debconf, po-debconf, default-jdk, ant, libhsqldb-java, ant-contrib,
- liblog4j1.2-java, libcommons-net2-java, libcommons-dbcp-java, libgnumail-java, libcommons-pool-java,
- libgnujaf-java, libjgoodies-forms-java (>= 1.3), liboro-java, libregexp-java,
- libjcommon-java, libjsch-java, libjdom1-java, junit4, libsaxonb-java, libjdepend-java,
- javahelper (>=0.25), libcommons-cli-java, libcommons-codec-java, libcommons-httpclient-java, libcommons-logging-java,
- libjets3t-java
-Standards-Version: 3.9.4
-
-Package: biomaj
-Architecture: all
-Depends: ${misc:Depends}, ${java:Depends},
- default-jre | java6-runtime, ant (>= 1.9.1), libmysql-java, debconf,
- libhsqldb-java,ant-contrib,liblog4j1.2-java,libcommons-net2-java (>= 2.2),libcommons-dbcp-java (>= 1.2),
- libgnumail-java, libcommons-pool-java (>= 1.5), libgnujaf-java, libjgoodies-forms-java (>= 1.3),
- liboro-java (>= 2.0),libregexp-java (>= 1.4),libjcommon-java (>= 1.0),libjsch-java (>= 0.1.42),
- libjdom1-java (>= 1.1),junit4,libsaxonb-java (>= 0.9), libcommons-cli-java, libcommons-codec-java,
- libcommons-httpclient-java, libcommons-logging-java,libjets3t-java, perl,
- mysql-server
-Suggests: ncbi-tools-bin, blast2
-Description: biological data-bank updater
- BioMAJ downloads remote data banks, checks their status and applies
- transformation workflows, with consistent state, to provide ready-to-use
- data for biologists and bioinformaticians. For example, it can transform
- original FASTA files into BLAST indexes. It is very flexible and its
- post-processing facilities can be extended very easily.
-
-Package: biomaj-properties
-Architecture: all
-Depends: ${misc:Depends}
-Description: biological data-bank updater - example properties files
- This package contains a set of data bank properties files that can be
- used as examples for BioMAJ. It contains descriptions for many existing
- data banks with or without workflows to transform data. Some files may
- require additional programs (such as BLAST) for post-processing.
Copied: trunk/packages/biomaj/tags/1.2.3-2/debian/control (from rev 15119, trunk/packages/biomaj/trunk/debian/control)
===================================================================
--- trunk/packages/biomaj/tags/1.2.3-2/debian/control (rev 0)
+++ trunk/packages/biomaj/tags/1.2.3-2/debian/control 2013-11-10 08:00:16 UTC (rev 15181)
@@ -0,0 +1,43 @@
+Source: biomaj
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Olivier Sallou <osallou at debian.org>
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/biomaj/trunk/
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/biomaj/trunk/
+Homepage: http://biomaj.genouest.org
+Build-Depends: debhelper (>= 7.1)
+Build-Depends-Indep: debconf, po-debconf, default-jdk, ant, libhsqldb-java, ant-contrib,
+ liblog4j1.2-java, libcommons-net2-java, libcommons-dbcp-java, libgnumail-java, libcommons-pool-java,
+ libgnujaf-java, libjgoodies-forms-java (>= 1.3), liboro-java, libregexp-java,
+ libjcommon-java, libjsch-java, libjdom1-java, junit4, libsaxonb-java, libjdepend-java,
+ javahelper (>=0.25), libcommons-cli-java, libcommons-codec-java, libcommons-httpclient-java, libcommons-logging-java,
+ libjets3t-java
+Standards-Version: 3.9.4
+
+Package: biomaj
+Architecture: all
+Depends: ${misc:Depends}, ${java:Depends},
+ default-jre | java6-runtime, ant (>= 1.9.1), libmysql-java, debconf,
+ libhsqldb-java,ant-contrib,liblog4j1.2-java,libcommons-net2-java (>= 2.2),libcommons-dbcp-java (>= 1.2),
+ libgnumail-java, libcommons-pool-java (>= 1.5), libgnujaf-java, libjgoodies-forms-java (>= 1.3),
+ liboro-java (>= 2.0),libregexp-java (>= 1.4),libjcommon-java (>= 1.0),libjsch-java (>= 0.1.42),
+ libjdom1-java (>= 1.1),junit4,libsaxonb-java (>= 0.9), libcommons-cli-java, libcommons-codec-java,
+ libcommons-httpclient-java, libcommons-logging-java,libjets3t-java, perl,
+ mysql-server
+Suggests: ncbi-tools-bin, blast2
+Description: biological data-bank updater
+ BioMAJ downloads remote data banks, checks their status and applies
+ transformation workflows, with consistent state, to provide ready-to-use
+ data for biologists and bioinformaticians. For example, it can transform
+ original FASTA files into BLAST indexes. It is very flexible and its
+ post-processing facilities can be extended very easily.
+
+Package: biomaj-properties
+Architecture: all
+Depends: ${misc:Depends}
+Description: biological data-bank updater - example properties files
+ This package contains a set of data bank properties files that can be
+ used as examples for BioMAJ. It contains descriptions for many existing
+ data banks with or without workflows to transform data. Some files may
+ require additional programs (such as BLAST) for post-processing.
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