[med-svn] r15205 - in trunk/packages/probalign/trunk/debian: . patches

Wed Nov 20 21:59:52 UTC 2013

Author: tille
Date: 2013-11-20 21:59:52 +0000 (Wed, 20 Nov 2013)
New Revision: 15205

Modified:
   trunk/packages/probalign/trunk/debian/changelog
   trunk/packages/probalign/trunk/debian/compat
   trunk/packages/probalign/trunk/debian/control
   trunk/packages/probalign/trunk/debian/copyright
   trunk/packages/probalign/trunk/debian/patches/fix-gcc-4.6.patch
   trunk/packages/probalign/trunk/debian/patches/series
   trunk/packages/probalign/trunk/debian/rules
Log:
Mass commit 1.4-3


Modified: trunk/packages/probalign/trunk/debian/changelog
===================================================================

--- trunk/packages/probalign/trunk/debian/changelog	2013-11-20 21:59:09 UTC (rev 15204)
+++ trunk/packages/probalign/trunk/debian/changelog	2013-11-20 21:59:52 UTC (rev 15205)
@@ -1,4 +1,4 @@
-probalign (1.4-3) UNRELEASED; urgency=low
+probalign (1.4-3) unstable; urgency=low
 
   [ Andreas Tille ]
   * debian/upstream
@@ -6,11 +6,18 @@
     - moved DOI+PMID to references
     - separate authors by ' and '
     - added eprint
+  * debian/control:
+    - cme fix dpkg-control
+    - debhelper 9
+    - removed quilt Build-Depends
+    - canonical Vcs URLs
+  * debian/copyright: DEP5
+  * debian/patches/hardening.patch: Propagate hardening options
 
   [ Charles Plessy ]
   * Add missing word in long description (Closes: #703253). 
 
- -- Andreas Tille <tille at debian.org>  Thu, 08 Mar 2012 14:29:25 +0100
+ -- Andreas Tille <tille at debian.org>  Thu, 14 Nov 2013 16:41:20 +0100
 
 probalign (1.4-2) unstable; urgency=low
 

Modified: trunk/packages/probalign/trunk/debian/compat
===================================================================
--- trunk/packages/probalign/trunk/debian/compat	2013-11-20 21:59:09 UTC (rev 15204)
+++ trunk/packages/probalign/trunk/debian/compat	2013-11-20 21:59:52 UTC (rev 15205)
@@ -1 +1 @@
-8
+9

Modified: trunk/packages/probalign/trunk/debian/control
===================================================================
--- trunk/packages/probalign/trunk/debian/control	2013-11-20 21:59:09 UTC (rev 15204)
+++ trunk/packages/probalign/trunk/debian/control	2013-11-20 21:59:52 UTC (rev 15205)
@@ -1,18 +1,19 @@
 Source: probalign
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-DM-Upload-Allowed: yes
-Uploaders: Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 8), quilt (>= 0.47), help2man
-Standards-Version: 3.9.2
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/probalign/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/probalign/trunk/
+Build-Depends: debhelper (>= 9),
+               help2man
+Standards-Version: 3.9.4
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/probalign/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/probalign/trunk/
 Homepage: http://cs.njit.edu/usman/probalign/
 
 Package: probalign
 Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
 Description: multiple sequence alignment using partition function posterior probabilities
  Probalign uses partition function posterior probability estimates to
  compute maximum expected accuracy multiple sequence alignments. It

Modified: trunk/packages/probalign/trunk/debian/copyright
===================================================================
--- trunk/packages/probalign/trunk/debian/copyright	2013-11-20 21:59:09 UTC (rev 15204)
+++ trunk/packages/probalign/trunk/debian/copyright	2013-11-20 21:59:52 UTC (rev 15205)
@@ -1,4 +1,4 @@
-Format: http://dep.debian.net/deps/dep5/
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: Probalign
 Upstream-Contact: Usman Roshan <usman at cs.njit.edu>
 Source: http://cs.njit.edu/usman/probalign/
@@ -7,8 +7,7 @@
 Copyright: © 2010 Satish Chikkagoudar and Usman Roshan
            © 2005 Chuong Dousing (PROBCONS 1.1)
            © 2002 Ulrike Muckstein (probA)
-
-License: Public Domain
+License: PD
  PROBALIGN has been made freely available as PUBLIC DOMAIN
  software and hence is not subject to copyright in the  United
  States.  This system and/or any portion of  the  source  code
@@ -19,7 +18,7 @@
 
 
 Files: debian/*
-Copyright: © 2011 Andreas Tille <tille at debian.org>
+Copyright: © 2011-2013 Andreas Tille <tille at debian.org>
 License: LGPL-3
  On Debian GNU/Linux systems the full text of LGPL-3 license can be
  found at /usr/share/common-licenses/LGPL-3

Modified: trunk/packages/probalign/trunk/debian/patches/fix-gcc-4.6.patch
===================================================================
--- trunk/packages/probalign/trunk/debian/patches/fix-gcc-4.6.patch	2013-11-20 21:59:09 UTC (rev 15204)
+++ trunk/packages/probalign/trunk/debian/patches/fix-gcc-4.6.patch	2013-11-20 21:59:52 UTC (rev 15205)
@@ -1,3 +1,8 @@
+Author: Andreas Tille <tille at debian.org>
+LastChanged: Mon, 02 May 2011 17:02:21 +0200
+BugsDebian: http://bugs.debian.org/624979
+Description: Add missing include that is required since gcc-4.6
+
 --- probalign1.4.orig/SafeVector.h
 +++ probalign1.4/SafeVector.h
 @@ -10,6 +10,7 @@

Modified: trunk/packages/probalign/trunk/debian/patches/series
===================================================================
--- trunk/packages/probalign/trunk/debian/patches/series	2013-11-20 21:59:09 UTC (rev 15204)
+++ trunk/packages/probalign/trunk/debian/patches/series	2013-11-20 21:59:52 UTC (rev 15205)
@@ -1,2 +1,3 @@
 gcc_fixes.patch
 fix-gcc-4.6.patch
+hardening.patch

Modified: trunk/packages/probalign/trunk/debian/rules
===================================================================
--- trunk/packages/probalign/trunk/debian/rules	2013-11-20 21:59:09 UTC (rev 15204)
+++ trunk/packages/probalign/trunk/debian/rules	2013-11-20 21:59:52 UTC (rev 15205)
@@ -10,7 +10,7 @@
 PKG := $(shell dpkg-parsechangelog | sed -n 's/^Source: //p')
 
 %:
-	dh $@ --with quilt
+	dh $@
 
 override_dh_auto_install:
 	help2man --name="Align sequences in MFAFILE(s) and print result to standard output" \


