[med-svn] r15216 - in trunk/packages/autodock-vina/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2013-11-20 22:05:48 +0000 (Wed, 20 Nov 2013)
New Revision: 15216

Modified:
   trunk/packages/autodock-vina/trunk/debian/changelog
   trunk/packages/autodock-vina/trunk/debian/compat
   trunk/packages/autodock-vina/trunk/debian/control
   trunk/packages/autodock-vina/trunk/debian/patches/series
   trunk/packages/autodock-vina/trunk/debian/rules
Log:
Tagged 1.1.2-3


Modified: trunk/packages/autodock-vina/trunk/debian/changelog
===================================================================
--- trunk/packages/autodock-vina/trunk/debian/changelog	2013-11-20 22:05:16 UTC (rev 15215)
+++ trunk/packages/autodock-vina/trunk/debian/changelog	2013-11-20 22:05:48 UTC (rev 15216)
@@ -1,21 +1,23 @@
-autodock-vina (1.1.2-3) UNRELEASED; urgency=low
+autodock-vina (1.1.2-3) unstable; urgency=low
 
+  [ Andreas Tille ]
+  * debian/upstream:
+     - Separate authors by ' and ' rather by ','
+     - Moved DOI to references
   * debian/copyright: Upstream-Contact changed and DEP5
   * debian/patches/fix_boost.patch: Description of patch incl.
     forewarded upstream
-  [Steffen Moeller]
-  * Added Stefano Forli to uploaders.
+  * debian/control:
+     - cme fix dpkg-control
+     - Priority: optional
+     - canonical Vcs URLs
+     - debhelper 9
 
   [ Thorsten Alteholz ]
   * debian/rules: target get-orig-source added
 
-  [ Andreas Tille ]
-  * debian/upstream:
-     - Separate authors by ' and ' rather by ','
-     - Moved DOI to references
+ -- Andreas Tille <tille at debian.org>  Tue, 19 Nov 2013 17:57:26 +0100
 
- -- Andreas Tille <tille at debian.org>  Mon, 28 Nov 2011 13:52:29 +0100
-
 autodock-vina (1.1.2-2) unstable; urgency=low
 
   * Fix boost compatibility error (thanks for the patch to

Modified: trunk/packages/autodock-vina/trunk/debian/compat
===================================================================
--- trunk/packages/autodock-vina/trunk/debian/compat	2013-11-20 22:05:16 UTC (rev 15215)
+++ trunk/packages/autodock-vina/trunk/debian/compat	2013-11-20 22:05:48 UTC (rev 15216)
@@ -1 +1 @@
-8
+9

Modified: trunk/packages/autodock-vina/trunk/debian/control
===================================================================
--- trunk/packages/autodock-vina/trunk/debian/control	2013-11-20 22:05:16 UTC (rev 15215)
+++ trunk/packages/autodock-vina/trunk/debian/control	2013-11-20 22:05:48 UTC (rev 15216)
@@ -1,23 +1,24 @@
 Source: autodock-vina
-Section: science
-Priority: extra
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-DM-Upload-Allowed: yes
 Uploaders: Steffen Moeller <moeller at debian.org>,
- Yask Gupta <yask.gupta87 at gmail.com>,
- Michael Banck <mbanck at debian.org>,
- Andreas Tille <tille at debian.org>,
- Stefano Forli <ntropia at gmail.com>
-Build-Depends: debhelper (>= 8), libboost-all-dev
-Standards-Version: 3.9.2
+           Yask Gupta <yask.gupta87 at gmail.com>,
+           Michael Banck <mbanck at debian.org>,
+           Andreas Tille <tille at debian.org>
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               libboost-all-dev
+Standards-Version: 3.9.4
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/autodock-vina/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/autodock-vina/trunk/
 Homepage: http://vina.scripps.edu
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/autodock-vina/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/autodock-vina/trunk/
 
 Package: autodock-vina
 Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
-Suggests: autodock, autogrid
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
+Suggests: autodock,
+          autogrid
 Description: docking of small molecules to proteins
  AutoDock Vina is a program to support drug discovery, molecular
  docking and virtual screening of compound libraries. It offers

Modified: trunk/packages/autodock-vina/trunk/debian/patches/series
===================================================================
--- trunk/packages/autodock-vina/trunk/debian/patches/series	2013-11-20 22:05:16 UTC (rev 15215)
+++ trunk/packages/autodock-vina/trunk/debian/patches/series	2013-11-20 22:05:48 UTC (rev 15216)
@@ -1,5 +1,4 @@
 remove_static.patch
-top_level_Makefile.patch
 do_not_link_against_unneeded_libs.patch
 annoying_static_removed_was_in_for_a_reason_questionmark.patch
 fix_boost.patch

Modified: trunk/packages/autodock-vina/trunk/debian/rules
===================================================================
--- trunk/packages/autodock-vina/trunk/debian/rules	2013-11-20 22:05:16 UTC (rev 15215)
+++ trunk/packages/autodock-vina/trunk/debian/rules	2013-11-20 22:05:48 UTC (rev 15216)
@@ -6,19 +6,20 @@
 # Uncomment this to turn on verbose mode.
 #export DH_VERBOSE=1
 
-CFLAGS=-fpermissive -DBOOST_FILESYSTEM_VERSION=2 --lto
-LDFLAGS=--lto
-CXXFLAGS=$(CFLAGS)
+CFLAGS+=-fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto
+CXXFLAGS+=-fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto
+LDFLAGS+=--lto
 
 %:
 	dh  $@
 
-clean::
+override_dh_auto_build:
+	$(MAKE) BASE=/usr -C build/linux/release CLFAGS="$(CFLAGS)" CXXFLAGS="$(CXXFLAGS)" LDFLAGS="$(LDFLAGS)"
+
+override_dh_clean:
 	dh_clean
 	rm -f build/linux/release/*.o build/linux/release/vina*
 
-.PHONY: build
-
 get-orig-source:
 	mkdir -p ../tarballs
 	uscan --verbose --force-download --destdir=../tarballs