[med-svn] [mne-python] 02/04: Merge tag 'upstream/0.7_rc1'
Andreas Tille
tille at debian.org
Thu Nov 21 21:14:56 UTC 2013
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository mne-python.
commit 9d000efc0eced285fdcd2e91a7d764a5201f55c2
Merge: f0135d8 3ceaf17
Author: Andreas Tille <tille at debian.org>
Date: Thu Nov 21 21:52:26 2013 +0100
Merge tag 'upstream/0.7_rc1'
Upstream version 0.7~rc1
.travis.yml | 35 +
MANIFEST.in | 8 +-
Makefile | 22 +
README.rst | 8 +
bin/mne | 36 +
doc/Makefile | 5 +
doc/source/_static/logo.png | Bin 74269 -> 175727 bytes
doc/source/_templates/layout.html | 1 +
doc/source/cite.rst | 10 +
doc/source/contributing.rst | 127 +-
doc/source/getting_started.rst | 69 +-
doc/source/git_links.inc | 28 +-
doc/source/index.rst | 1 +
doc/source/mne-python.rst | 9 +-
doc/source/python_reference.rst | 59 +-
doc/source/python_tutorial.rst | 30 +-
doc/source/whats_new.rst | 89 +
doc/sphinxext/gen_rst.py | 8 +-
doc/upload_html.sh | 1 +
.../connectivity/plot_cwt_sensor_connectivity.py | 4 +-
.../plot_mne_inverse_coherence_epochs.py | 8 +-
.../plot_mne_inverse_connectivity_spectrum.py | 10 +-
.../plot_mne_inverse_label_connectivity.py | 8 +-
.../connectivity/plot_mne_inverse_psi_visual.py | 2 +-
examples/datasets/README.txt | 5 +
examples/datasets/plot_spm_faces_dataset.py | 118 +
examples/decoding/plot_decoding_csp_space.py | 106 +
examples/decoding/plot_decoding_sensors.py | 24 +-
.../plot_decoding_spatio_temporal_source.py | 2 +-
examples/export/plot_epochs_as_data_frame.py | 8 +-
examples/export/plot_epochs_to_nitime.py | 4 +-
examples/export/plot_evoked_to_nitime.py | 4 +-
examples/export/plot_raw_to_nitime.py | 14 +-
examples/inverse/plot_compute_mne_inverse.py | 12 +-
.../plot_compute_mne_inverse_epochs_in_label.py | 22 +-
.../plot_compute_mne_inverse_raw_in_label.py | 12 +-
.../inverse/plot_compute_mne_inverse_volume.py | 32 +-
examples/inverse/plot_dics_beamformer.py | 89 +
examples/inverse/plot_dics_source_power.py | 79 +
examples/inverse/plot_gamma_map_inverse.py | 9 +-
examples/inverse/plot_label_activation_from_stc.py | 24 +-
examples/inverse/plot_label_from_stc.py | 105 +
examples/inverse/plot_label_source_activations.py | 26 +-
examples/inverse/plot_lcmv_beamformer.py | 29 +-
examples/inverse/plot_lcmv_beamformer_volume.py | 31 +-
examples/inverse/plot_make_inverse_operator.py | 30 +-
examples/inverse/plot_mixed_norm_L21_inverse.py | 12 +-
examples/inverse/plot_morph_data.py | 16 +-
examples/inverse/plot_read_stc.py | 10 +-
examples/inverse/plot_tf_dics.py | 116 +
examples/inverse/plot_tf_lcmv.py | 130 +
.../plot_time_frequency_mixed_norm_inverse.py | 13 +-
examples/plot_channel_epochs_image.py | 10 +-
examples/plot_decimate_head_surface.py | 39 +
examples/plot_define_target_events.py | 20 +-
examples/plot_evoked_delayed_ssp.py | 12 +-
examples/plot_evoked_whitening.py | 3 +-
examples/plot_from_raw_to_epochs_to_evoked.py | 21 +-
.../plot_from_raw_to_multiple_epochs_to_evoked.py | 18 +-
examples/plot_make_forward.py | 54 +
examples/plot_megsim_data.py | 6 +-
examples/plot_megsim_data_single_trial.py | 1 -
examples/plot_read_forward.py | 26 +-
examples/plot_read_noise_covariance_matrix.py | 8 +-
examples/plot_shift_evoked.py | 4 +-
examples/plot_simulate_evoked_data.py | 10 +-
examples/plot_ssp_projs_sensitivity_map.py | 10 +-
examples/plot_ssp_projs_topomaps.py | 4 +-
examples/plot_topo_channel_epochs_image.py | 4 +-
examples/plot_topo_compare_conditions.py | 6 +-
examples/plot_topography.py | 4 +-
examples/preprocessing/plot_find_ecg_artifacts.py | 12 +-
examples/preprocessing/plot_find_eog_artifacts.py | 10 +-
examples/preprocessing/plot_ica_from_epochs.py | 78 +-
examples/preprocessing/plot_ica_from_raw.py | 111 +-
examples/realtime/README.txt | 5 +
examples/realtime/plot_compute_rt_average.py | 64 +
examples/realtime/plot_compute_rt_decoder.py | 111 +
examples/realtime/rt_feedback_client.py | 116 +
examples/realtime/rt_feedback_server.py | 144 +
.../plot_cluster_1samp_test_time_frequency.py | 50 +-
examples/stats/plot_cluster_methods_tutorial.py | 18 +-
examples/stats/plot_cluster_stats_evoked.py | 35 +-
.../stats/plot_cluster_stats_spatio_temporal.py | 28 +-
.../plot_cluster_stats_spatio_temporal_2samp.py | 20 +-
...tats_spatio_temporal_repeated_measures_anova.py | 63 +-
.../stats/plot_cluster_stats_time_frequency.py | 44 +-
...stats_time_frequency_repeated_measures_anova.py | 80 +-
examples/stats/plot_fdr_stats_evoked.py | 28 +-
examples/stats/plot_sensor_permutation_test.py | 22 +-
.../plot_compute_raw_data_spectrum.py | 61 +-
.../plot_compute_source_psd_epochs.py | 12 +-
.../time_frequency/plot_single_trial_spectra.py | 84 +
.../plot_source_label_time_frequency.py | 96 +-
.../time_frequency/plot_source_power_spectrum.py | 14 +-
.../plot_source_space_time_frequency.py | 16 +-
examples/time_frequency/plot_temporal_whitening.py | 26 +-
examples/time_frequency/plot_tfr_topography.py | 6 +-
examples/time_frequency/plot_time_frequency.py | 58 +-
mne/__init__.py | 75 +-
mne/baseline.py | 10 +-
mne/beamformer/__init__.py | 3 +-
mne/beamformer/_dics.py | 587 ++
mne/beamformer/_lcmv.py | 444 +-
mne/beamformer/tests/test_dics.py | 296 +
mne/beamformer/tests/test_lcmv.py | 357 +-
mne/{transforms/tests => commands}/__init__.py | 0
{bin => mne/commands}/mne_browse_raw.py | 23 +-
{bin => mne/commands}/mne_bti2fiff.py | 33 +-
{bin => mne/commands}/mne_clean_eog_ecg.py | 13 +-
{bin => mne/commands}/mne_compute_proj_ecg.py | 141 +-
{bin => mne/commands}/mne_compute_proj_eog.py | 15 +-
{bin => mne/commands}/mne_flash_bem_model.py | 7 +-
{bin => mne/commands}/mne_kit2fiff.py | 32 +-
mne/commands/mne_make_scalp_surfaces.py | 129 +
{bin => mne/commands}/mne_maxfilter.py | 9 +-
{bin => mne/commands}/mne_surf2bem.py | 21 +-
mne/commands/utils.py | 39 +
mne/connectivity/effective.py | 4 +-
mne/connectivity/spectral.py | 21 +-
mne/connectivity/tests/test_effective.py | 25 +-
mne/connectivity/tests/test_spectral.py | 39 +-
mne/coreg.py | 1041 +++
mne/cov.py | 57 +-
mne/cuda.py | 10 +-
mne/data/coil_def.dat | 416 +
mne/datasets/__init__.py | 1 +
mne/datasets/megsim/megsim.py | 7 +-
mne/datasets/sample/__init__.py | 2 +-
mne/datasets/sample/sample.py | 156 +-
mne/datasets/spm_face/__init__.py | 4 +
mne/datasets/spm_face/spm_data.py | 30 +
mne/datasets/{sample/sample.py => utils.py} | 134 +-
mne/decoding/__init__.py | 4 +
mne/decoding/classifier.py | 425 +
mne/decoding/csp.py | 205 +
mne/decoding/mixin.py | 30 +
mne/{ => decoding}/tests/__init__.py | 0
mne/decoding/tests/test_classifier.py | 127 +
mne/decoding/tests/test_csp.py | 97 +
mne/dipole.py | 4 +-
mne/epochs.py | 718 +-
mne/event.py | 218 +-
mne/fiff/__init__.py | 15 +-
mne/fiff/brainvision/__init__.py | 7 +
mne/fiff/brainvision/brainvision.py | 518 ++
mne/fiff/brainvision/tests/__init__.py | 1 +
mne/fiff/brainvision/tests/data/test.eeg | Bin 0 -> 505600 bytes
mne/fiff/brainvision/tests/data/test.vhdr | 142 +
mne/fiff/brainvision/tests/data/test.vmrk | 22 +
mne/fiff/brainvision/tests/data/test_bin_raw.fif | Bin 0 -> 526560 bytes
mne/fiff/brainvision/tests/data/test_elp.txt | 45 +
mne/fiff/brainvision/tests/test_brainvision.py | 75 +
mne/fiff/bti/raw.py | 50 +-
mne/fiff/bti/read.py | 3 -
mne/fiff/bti/tests/test_bti.py | 13 +-
mne/fiff/compensator.py | 15 +-
mne/fiff/constants.py | 88 +-
mne/fiff/cov.py | 14 +-
mne/fiff/ctf.py | 5 +-
mne/fiff/diff.py | 5 +-
mne/fiff/edf/__init__.py | 7 +
mne/fiff/edf/edf.py | 594 ++
mne/{ => fiff/edf}/tests/__init__.py | 0
mne/fiff/edf/tests/data/biosemi.hpts | 82 +
mne/fiff/edf/tests/data/test.bdf | 3222 +++++++
mne/fiff/edf/tests/data/test.edf | 9591 ++++++++++++++++++++
mne/fiff/edf/tests/data/test_bdf_eeglab.mat | Bin 0 -> 447053 bytes
mne/fiff/edf/tests/data/test_edf_eeglab.mat | Bin 0 -> 799941 bytes
mne/fiff/edf/tests/data/test_eeglab.mat | Bin 0 -> 447053 bytes
mne/fiff/edf/tests/test_edf.py | 87 +
mne/fiff/evoked.py | 57 +-
mne/fiff/kit/__init__.py | 1 +
mne/fiff/kit/constants.py | 22 +-
mne/fiff/kit/coreg.py | 306 +-
mne/fiff/kit/kit.py | 390 +-
mne/fiff/kit/tests/data/trans-sample.fif | Bin 0 -> 420 bytes
mne/fiff/kit/tests/test_coreg.py | 75 +
mne/fiff/kit/tests/test_kit.py | 91 +-
mne/fiff/matrix.py | 9 +-
mne/fiff/meas_info.py | 162 +-
mne/fiff/open.py | 4 +-
mne/fiff/pick.py | 88 +-
mne/fiff/proj.py | 56 +-
mne/fiff/raw.py | 328 +-
mne/fiff/tag.py | 21 +-
mne/fiff/tests/data/fsaverage-fiducials.fif | Bin 0 -> 260 bytes
mne/fiff/tests/data/sample-audvis-raw-trans.txt | 4 +
mne/fiff/tests/data/test-lh.label | 101 +
mne/fiff/tests/data/test-rh.label | 102 +
mne/fiff/tests/data/test_chpi_raw_hp.txt | 5 +
mne/fiff/tests/data/test_chpi_raw_sss.fif | Bin 0 -> 13071083 bytes
mne/fiff/tests/test_compensator.py | 2 +
mne/fiff/tests/test_evoked.py | 4 +-
mne/fiff/tests/test_meas_info.py | 66 +
mne/fiff/tests/test_raw.py | 180 +-
mne/fiff/tree.py | 5 +-
mne/fiff/write.py | 42 +-
mne/filter.py | 28 +-
mne/fixes.py | 26 +
mne/forward/__init__.py | 12 +
mne/forward/_compute_forward.py | 346 +
mne/forward/_make_forward.py | 494 +
mne/{ => forward}/forward.py | 327 +-
mne/{ => forward}/tests/__init__.py | 0
mne/{ => forward}/tests/test_forward.py | 153 +-
mne/forward/tests/test_make_forward.py | 227 +
mne/inverse_sparse/_gamma_map.py | 5 +-
mne/inverse_sparse/mxne_debiasing.py | 6 +-
mne/inverse_sparse/mxne_inverse.py | 5 +-
mne/inverse_sparse/mxne_optim.py | 14 +-
mne/inverse_sparse/tests/test_gamma_map.py | 18 +-
mne/inverse_sparse/tests/test_mxne_debiasing.py | 2 +-
mne/inverse_sparse/tests/test_mxne_inverse.py | 71 +-
mne/inverse_sparse/tests/test_mxne_optim.py | 10 +-
mne/label.py | 410 +-
mne/layouts/layout.py | 10 +-
mne/minimum_norm/__init__.py | 12 +-
mne/minimum_norm/inverse.py | 257 +-
mne/minimum_norm/tests/test_inverse.py | 97 +-
mne/minimum_norm/tests/test_time_frequency.py | 28 +-
mne/minimum_norm/time_frequency.py | 97 +-
mne/parallel.py | 72 +-
mne/preprocessing/__init__.py | 4 +-
mne/preprocessing/ecg.py | 122 +-
mne/preprocessing/eog.py | 25 +-
mne/preprocessing/ica.py | 660 +-
mne/preprocessing/maxfilter.py | 27 +-
mne/preprocessing/peak_finder.py | 10 +-
mne/preprocessing/ssp.py | 104 +-
mne/preprocessing/stim.py | 15 +-
mne/preprocessing/tests/test_ica.py | 261 +-
mne/preprocessing/tests/test_ssp.py | 51 +-
mne/preprocessing/tests/test_stim.py | 54 +-
mne/proj.py | 59 +-
mne/realtime/__init__.py | 13 +
mne/realtime/client.py | 370 +
mne/realtime/epochs.py | 398 +
mne/realtime/mockclient.py | 175 +
mne/realtime/stim_server_client.py | 289 +
mne/{ => realtime}/tests/__init__.py | 0
mne/realtime/tests/test_mockclient.py | 58 +
mne/realtime/tests/test_stim_client_server.py | 63 +
mne/selection.py | 5 +-
mne/simulation/__init__.py | 4 +-
mne/simulation/tests/test_evoked.py | 5 +-
mne/simulation/tests/test_source.py | 42 +-
mne/source_estimate.py | 1152 +--
mne/source_space.py | 968 +-
mne/stats/__init__.py | 14 +-
mne/stats/cluster_level.py | 172 +-
mne/stats/parametric.py | 19 +-
mne/stats/tests/test_cluster_level.py | 223 +-
mne/stats/tests/test_parametric.py | 4 +-
mne/surface.py | 961 +-
mne/tests/__init__.py | 3 +
mne/tests/test_coreg.py | 154 +
mne/tests/test_cov.py | 20 +-
mne/tests/test_dipole.py | 4 +-
mne/tests/test_epochs.py | 84 +-
mne/tests/test_event.py | 44 +-
mne/tests/test_filter.py | 17 +-
mne/tests/test_label.py | 126 +-
mne/tests/test_misc.py | 2 +-
mne/tests/test_proj.py | 11 +-
mne/tests/test_source_estimate.py | 207 +-
mne/tests/test_source_space.py | 368 +-
mne/tests/test_surface.py | 84 +-
mne/tests/test_transforms.py | 62 +
mne/tests/test_utils.py | 53 +-
mne/tests/test_viz.py | 187 +-
mne/time_frequency/__init__.py | 3 +-
mne/time_frequency/csd.py | 258 +
mne/time_frequency/multitaper.py | 28 +-
mne/time_frequency/psd.py | 101 +-
mne/time_frequency/stft.py | 5 +-
mne/time_frequency/tests/test_csd.py | 163 +
mne/time_frequency/tests/test_psd.py | 54 +-
mne/time_frequency/tfr.py | 11 +-
mne/{transforms => }/transforms.py | 176 +-
mne/transforms/__init__.py | 2 -
mne/transforms/coreg.py | 67 -
mne/transforms/tests/test_coreg.py | 20 -
mne/transforms/tests/test_transforms.py | 31 -
mne/utils.py | 225 +-
mne/viz.py | 1436 ++-
setup.py | 50 +-
287 files changed, 34137 insertions(+), 5036 deletions(-)
--
Alioth's /git/debian-med/git-commit-notice on /srv/git.debian.org/git/debian-med/mne-python.git
More information about the debian-med-commit
mailing list