[med-svn] r15261 - in trunk/packages/altree/tags: . 1.3.0-1/debian
Vincent Danjean
vdanjean at moszumanska.debian.org
Sat Nov 23 00:26:13 UTC 2013
Author: vdanjean
Date: 2013-11-23 00:26:13 +0000 (Sat, 23 Nov 2013)
New Revision: 15261
Added:
trunk/packages/altree/tags/1.3.0-1/
trunk/packages/altree/tags/1.3.0-1/debian/changelog
trunk/packages/altree/tags/1.3.0-1/debian/control
Removed:
trunk/packages/altree/tags/1.3.0-1/debian/changelog
trunk/packages/altree/tags/1.3.0-1/debian/control
Log:
[svn-buildpackage] Tagging altree 1.3.0-1
Deleted: trunk/packages/altree/tags/1.3.0-1/debian/changelog
===================================================================
--- trunk/packages/altree/trunk/debian/changelog 2013-11-22 22:38:54 UTC (rev 15254)
+++ trunk/packages/altree/tags/1.3.0-1/debian/changelog 2013-11-23 00:26:13 UTC (rev 15261)
@@ -1,153 +0,0 @@
-altree (1.2.1-1) unstable; urgency=low
-
- [ Andreas Tille ]
- * debian/upstream: Add eprint
- * debian/reference: Removed in favour of debian/upstream
-
- [ Vincent Danjean ]
- * New (stable) upstream release 1.2.1
- * debian/{README.Debian,watch}: No need to skip old last version 1.1.1
- * debian/patches/*: latex bug fixed upstream
-
- -- Vincent Danjean <vdanjean at debian.org> Sat, 09 Jun 2012 22:45:06 +0200
-
-altree (1.0.1-7) unstable; urgency=low
-
- [ Thorsten Alteholz ]
- * debian/rules: target get-orig-source added
-
- [ Charles Plessy ]
- * Renamed debian/upstream-metadata.yaml to debian/upstream
-
- [ Andreas Tille ]
- * debian/upstream: Single Reference field instead of Reference-*
- * debian/watch: Do not download version 1.1.1 as the author has
- asked for in
- http://lists.debian.org/debian-med/2009/08/msg00104.html
- * debian/README.Debian: Document the "do not package new version"
- issue
- * debian/control: Standards-Version: 3.9.3 (no changes needed)
- * debian/changelog: Verified DEP5 using
- cme fix dpkg-copyright
- * debian/patches/build-with-recent-tetex.patch: Drop dvips option
- Closes: #669551
- * debhelper 9 (control+compat)
-
- -- Andreas Tille <tille at debian.org> Sun, 22 Apr 2012 08:40:48 +0200
-
-altree (1.0.1-5) unstable; urgency=low
-
- * Upload source package without 3.0 (quilt) autopatch leftover.
- Closes: #643045.
- * Corrected VCS URLs in debian/control.
- * Use Debhelper 8 (debian/control, debian/compat).
- * Converted debian/copyright to machine-readable format 1.0 (DEP 5).
- * Compress binary packages with xz (debian/rules).
- * Conforms with Policy 3.9.2 (debian/control, no other changes needed).
-
- -- Charles Plessy <plessy at debian.org> Tue, 27 Sep 2011 08:31:14 +0900
-
-altree (1.0.1-4) unstable; urgency=low
-
- [ Charles Plessy ]
- * Depends on libtamuanova-perl (debian/control).
- * Added a BibTeX reference in debian/reference and install it through
- debian/altree.docs.
- * Refreshed debian/copyright.
- * Using debhelper 7 (debian/compat, debian/control).
- * Incremented Standards-Version to reflect conformance to Policy 3.8.1
- (no changes needed).
- * Bash completion:
- - Build-depend on bash-completion >= 1:1 in debian/control.
- - Install the altree completion file using dh_bash-completion.
- * Added information about Upstream in debian/upstream-metadata.yaml.
-
- [ David Paleino ]
- * debian/control:
- - removed unneeded Build-Dependencies
- - added ${misc:Depends} dependency to altree-examples
- - removed myself from Uploaders
- * debian/rules:
- - removing unneeded included Makefile
-
- [Andreas Tille]
- * use short debhelper instead of cdbs because the install target
- did not worked properly any more
- * debian/source/format: 3.0 (quilt)
- * debian/control:
- - Standards-Version: 3.9.1
- - Added myself to Uploaders
- - Added Build-Depends: ghostscript to avoid errors in LaTeX run
- Closes: #614538
- - Removed libtamuanova-perl from Depends again because it has no
- installation candidate
-
- -- Andreas Tille <tille at debian.org> Tue, 22 Feb 2011 14:37:21 +0100
-
-altree (1.0.1-3) unstable; urgency=low
-
- [ Charles Plessy ]
- * Initial release for Debian (Closes: #461506)
- * debian/copyright: converted to machine-readable format.
- * debian/control:
- - Added texlive-lang-french, texlive-latex-base, texlive-latex-recommended
- and texlive-latex-extra as build dependencies.
- - Updated my email address.
-
- [ David Paleino ]
- * Added debian/watch
- * debian/compat and debhelper dependency updated
- * debian/control:
- - added myself in Uploaders
- - Standards-Version is now 3.7.3
-
- [ Vincent Danjean ]
- * remove unused debian/control.in file
- * Fix copyright (and update email addresses)
- * Fix build-depends:
- + remove debian part of version (thanks lintian)
- + change latex-utils to latex-make (always present with this name in
- Debian)
- * Fix depends: add ${perl:Depends}
- * remove empty dir in package (/usr/sbin)
- => package lintian clean now
-
- -- Vincent Danjean <vdanjean at debian.org> Mon, 12 May 2008 08:19:31 +0200
-
-altree (1.0.1-1) unstable; urgency=low
-
- * New upstream release
-
- -- Vincent Danjean <Vincent.Danjean at ens-lyon.org> Fri, 13 Jan 2006 15:46:52 +0100
-
-altree (1.0.0-1) unstable; urgency=low
-
- * New upstream release
-
- -- Vincent Danjean <Vincent.Danjean at ens-lyon.org> Fri, 13 Jan 2006 09:40:02 +0100
-
-altree (0.9.2-2) unstable; urgency=low
-
- * Update FSF address in copyright file
-
- -- Vincent Danjean <Vincent.Danjean at ens-lyon.org> Sat, 10 Sep 2005 10:25:23 +0200
-
-altree (0.9.2-1) unstable; urgency=low
-
- * New upstream release
- * New upstream name
-
- -- Vincent Danjean <Vincent.Danjean at ens-lyon.org> Tue, 2 Aug 2005 19:52:19 +0200
-
-alphy (0.9.1d-1) unstable; urgency=low
-
- * New upstream release
-
- -- Vincent Danjean <Vincent.Danjean at ens-lyon.org> Tue, 26 Jul 2005 00:08:40 +0200
-
-alphy (0.9.1c-1) unstable; urgency=low
-
- * Initial release
-
- -- Vincent Danjean <Vincent.Danjean at ens-lyon.org> Mon, 25 Jul 2005 22:22:50 +0200
-
Copied: trunk/packages/altree/tags/1.3.0-1/debian/changelog (from rev 15260, trunk/packages/altree/trunk/debian/changelog)
===================================================================
--- trunk/packages/altree/tags/1.3.0-1/debian/changelog (rev 0)
+++ trunk/packages/altree/tags/1.3.0-1/debian/changelog 2013-11-23 00:26:13 UTC (rev 15261)
@@ -0,0 +1,167 @@
+altree (1.3.0-1) unstable; urgency=low
+
+ * New upstream release
+ + Mostly performance improvment
+ * debian/control:
+ + bump Standard-Version (no change needed)
+ + put canonical vcs fields
+ + remove outdated DM-Upload-Allowed field
+ + improve altree-examples long description
+ + add libgsl0-dev and libatlas-base-dev as new build-dependency
+ + remove libpdl-stats-perl as (build-)dependency
+
+ -- Vincent Danjean <vdanjean at debian.org> Fri, 22 Nov 2013 23:57:43 +0100
+
+altree (1.2.1-1) unstable; urgency=low
+
+ [ Andreas Tille ]
+ * debian/upstream: Add eprint
+ * debian/reference: Removed in favour of debian/upstream
+
+ [ Vincent Danjean ]
+ * New (stable) upstream release 1.2.1
+ * debian/{README.Debian,watch}: No need to skip old last version 1.1.1
+ * debian/patches/*: latex bug fixed upstream
+
+ -- Vincent Danjean <vdanjean at debian.org> Sat, 09 Jun 2012 22:45:06 +0200
+
+altree (1.0.1-7) unstable; urgency=low
+
+ [ Thorsten Alteholz ]
+ * debian/rules: target get-orig-source added
+
+ [ Charles Plessy ]
+ * Renamed debian/upstream-metadata.yaml to debian/upstream
+
+ [ Andreas Tille ]
+ * debian/upstream: Single Reference field instead of Reference-*
+ * debian/watch: Do not download version 1.1.1 as the author has
+ asked for in
+ http://lists.debian.org/debian-med/2009/08/msg00104.html
+ * debian/README.Debian: Document the "do not package new version"
+ issue
+ * debian/control: Standards-Version: 3.9.3 (no changes needed)
+ * debian/changelog: Verified DEP5 using
+ cme fix dpkg-copyright
+ * debian/patches/build-with-recent-tetex.patch: Drop dvips option
+ Closes: #669551
+ * debhelper 9 (control+compat)
+
+ -- Andreas Tille <tille at debian.org> Sun, 22 Apr 2012 08:40:48 +0200
+
+altree (1.0.1-5) unstable; urgency=low
+
+ * Upload source package without 3.0 (quilt) autopatch leftover.
+ Closes: #643045.
+ * Corrected VCS URLs in debian/control.
+ * Use Debhelper 8 (debian/control, debian/compat).
+ * Converted debian/copyright to machine-readable format 1.0 (DEP 5).
+ * Compress binary packages with xz (debian/rules).
+ * Conforms with Policy 3.9.2 (debian/control, no other changes needed).
+
+ -- Charles Plessy <plessy at debian.org> Tue, 27 Sep 2011 08:31:14 +0900
+
+altree (1.0.1-4) unstable; urgency=low
+
+ [ Charles Plessy ]
+ * Depends on libtamuanova-perl (debian/control).
+ * Added a BibTeX reference in debian/reference and install it through
+ debian/altree.docs.
+ * Refreshed debian/copyright.
+ * Using debhelper 7 (debian/compat, debian/control).
+ * Incremented Standards-Version to reflect conformance to Policy 3.8.1
+ (no changes needed).
+ * Bash completion:
+ - Build-depend on bash-completion >= 1:1 in debian/control.
+ - Install the altree completion file using dh_bash-completion.
+ * Added information about Upstream in debian/upstream-metadata.yaml.
+
+ [ David Paleino ]
+ * debian/control:
+ - removed unneeded Build-Dependencies
+ - added ${misc:Depends} dependency to altree-examples
+ - removed myself from Uploaders
+ * debian/rules:
+ - removing unneeded included Makefile
+
+ [Andreas Tille]
+ * use short debhelper instead of cdbs because the install target
+ did not worked properly any more
+ * debian/source/format: 3.0 (quilt)
+ * debian/control:
+ - Standards-Version: 3.9.1
+ - Added myself to Uploaders
+ - Added Build-Depends: ghostscript to avoid errors in LaTeX run
+ Closes: #614538
+ - Removed libtamuanova-perl from Depends again because it has no
+ installation candidate
+
+ -- Andreas Tille <tille at debian.org> Tue, 22 Feb 2011 14:37:21 +0100
+
+altree (1.0.1-3) unstable; urgency=low
+
+ [ Charles Plessy ]
+ * Initial release for Debian (Closes: #461506)
+ * debian/copyright: converted to machine-readable format.
+ * debian/control:
+ - Added texlive-lang-french, texlive-latex-base, texlive-latex-recommended
+ and texlive-latex-extra as build dependencies.
+ - Updated my email address.
+
+ [ David Paleino ]
+ * Added debian/watch
+ * debian/compat and debhelper dependency updated
+ * debian/control:
+ - added myself in Uploaders
+ - Standards-Version is now 3.7.3
+
+ [ Vincent Danjean ]
+ * remove unused debian/control.in file
+ * Fix copyright (and update email addresses)
+ * Fix build-depends:
+ + remove debian part of version (thanks lintian)
+ + change latex-utils to latex-make (always present with this name in
+ Debian)
+ * Fix depends: add ${perl:Depends}
+ * remove empty dir in package (/usr/sbin)
+ => package lintian clean now
+
+ -- Vincent Danjean <vdanjean at debian.org> Mon, 12 May 2008 08:19:31 +0200
+
+altree (1.0.1-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Vincent Danjean <Vincent.Danjean at ens-lyon.org> Fri, 13 Jan 2006 15:46:52 +0100
+
+altree (1.0.0-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Vincent Danjean <Vincent.Danjean at ens-lyon.org> Fri, 13 Jan 2006 09:40:02 +0100
+
+altree (0.9.2-2) unstable; urgency=low
+
+ * Update FSF address in copyright file
+
+ -- Vincent Danjean <Vincent.Danjean at ens-lyon.org> Sat, 10 Sep 2005 10:25:23 +0200
+
+altree (0.9.2-1) unstable; urgency=low
+
+ * New upstream release
+ * New upstream name
+
+ -- Vincent Danjean <Vincent.Danjean at ens-lyon.org> Tue, 2 Aug 2005 19:52:19 +0200
+
+alphy (0.9.1d-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Vincent Danjean <Vincent.Danjean at ens-lyon.org> Tue, 26 Jul 2005 00:08:40 +0200
+
+alphy (0.9.1c-1) unstable; urgency=low
+
+ * Initial release
+
+ -- Vincent Danjean <Vincent.Danjean at ens-lyon.org> Mon, 25 Jul 2005 22:22:50 +0200
+
Deleted: trunk/packages/altree/tags/1.3.0-1/debian/control
===================================================================
--- trunk/packages/altree/trunk/debian/control 2013-11-22 22:38:54 UTC (rev 15254)
+++ trunk/packages/altree/tags/1.3.0-1/debian/control 2013-11-23 00:26:13 UTC (rev 15261)
@@ -1,38 +0,0 @@
-Source: altree
-Section: science
-Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-DM-Upload-Allowed: yes
-Uploaders: Charles Plessy <plessy at debian.org>,
- Vincent Danjean <vdanjean at debian.org>,
- Andreas Tille <tille at debian.org>
-Build-Depends: bash-completion, debhelper (>= 9), latex-make, ghostscript,
- texlive-lang-french, texlive-latex-extra, texlive-latex-recommended,
- texlive-fonts-recommended,
- libmath-tamuanova-perl, libpdl-stats-perl
-Standards-Version: 3.9.3
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/altree/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/altree/trunk/
-Homepage: http://claire.bardel.free.fr/software.html
-
-Package: altree
-Architecture: any
-Conflicts: libcutils-perl, alphy
-Replaces: libcutils-perl, alphy
-Provides: libcutils-perl, alphy
-Depends: ${shlibs:Depends}, ${misc:Depends}, ${perl:Depends},
- libmath-tamuanova-perl, libpdl-stats-perl
-Suggests: altree-examples
-Description: program to perform phylogeny-based association and localization analysis
- ALTree was designed to perform association detection and localization of
- susceptibility sites using haplotype phylogenetic trees: first, it allows the
- detection of an association between a candidate gene and a disease, and second,
- it enables to make hypothesis about the susceptibility loci.
-
-Package: altree-examples
-Architecture: all
-Recommends: altree (= ${binary:Version})
-Depends: ${misc:Depends}
-Description: example files for ALTree
- This package contains the example files for the ALTree package discussed in
- its PDF manual.
Copied: trunk/packages/altree/tags/1.3.0-1/debian/control (from rev 15260, trunk/packages/altree/trunk/debian/control)
===================================================================
--- trunk/packages/altree/tags/1.3.0-1/debian/control (rev 0)
+++ trunk/packages/altree/tags/1.3.0-1/debian/control 2013-11-23 00:26:13 UTC (rev 15261)
@@ -0,0 +1,42 @@
+Source: altree
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Charles Plessy <plessy at debian.org>,
+ Vincent Danjean <vdanjean at debian.org>,
+ Andreas Tille <tille at debian.org>
+Build-Depends: bash-completion, debhelper (>= 9), latex-make, ghostscript,
+ texlive-lang-french, texlive-latex-extra, texlive-latex-recommended,
+ texlive-fonts-recommended,
+ libmath-tamuanova-perl, libgsl0-dev, libatlas-base-dev
+Standards-Version: 3.9.4
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/altree/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/altree/trunk/
+Homepage: http://claire.bardel.free.fr/software.html
+
+Package: altree
+Architecture: any
+Conflicts: libcutils-perl, alphy
+Replaces: libcutils-perl, alphy
+Provides: libcutils-perl, alphy
+Depends: ${shlibs:Depends}, ${misc:Depends}, ${perl:Depends},
+ libmath-tamuanova-perl
+Suggests: altree-examples
+Description: program to perform phylogeny-based association and localization analysis
+ ALTree was designed to perform association detection and localization of
+ susceptibility sites using haplotype phylogenetic trees: first, it allows the
+ detection of an association between a candidate gene and a disease, and second,
+ it enables to make hypothesis about the susceptibility loci.
+
+Package: altree-examples
+Architecture: all
+Recommends: altree (= ${binary:Version})
+Depends: ${misc:Depends}
+Description: example files for ALTree
+ ALTree was designed to perform association detection and localization of
+ susceptibility sites using haplotype phylogenetic trees: first, it allows the
+ detection of an association between a candidate gene and a disease, and second,
+ it enables to make hypothesis about the susceptibility loci.
+ .
+ This package contains the example files for the ALTree package discussed in
+ its PDF manual.
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