[med-svn] r15297 - trunk/packages/seqan/trunk/debian

[Andreas Tille]

Author: tille
Date: 2013-11-28 10:54:40 +0000 (Thu, 28 Nov 2013)
New Revision: 15297

Modified:
   trunk/packages/seqan/trunk/debian/changelog
   trunk/packages/seqan/trunk/debian/rules
   trunk/packages/seqan/trunk/debian/seqan-apps.install
   trunk/packages/seqan/trunk/debian/seqan-apps.links
Log:
Fix common typo: sequan -> seqan


Modified: trunk/packages/seqan/trunk/debian/changelog
===================================================================
--- trunk/packages/seqan/trunk/debian/changelog	2013-11-28 10:52:40 UTC (rev 15296)
+++ trunk/packages/seqan/trunk/debian/changelog	2013-11-28 10:54:40 UTC (rev 15297)
@@ -71,7 +71,7 @@
     - Build-Depend on zlib1g-dev, as seqan needs to detect zlib to set
       SEQAN_HAS_SAMTOOLS to 1.
     - Changed Priority from extra to optional.
-    - Changed sequan-apps Section from libdevel to science.
+    - Changed seqan-apps Section from libdevel to science.
   * debian/patch/samtools.patch corrects path to SAMtools headers.
   * Machine-readable debian/copyright.
 

Modified: trunk/packages/seqan/trunk/debian/rules
===================================================================
--- trunk/packages/seqan/trunk/debian/rules	2013-11-28 10:52:40 UTC (rev 15296)
+++ trunk/packages/seqan/trunk/debian/rules	2013-11-28 10:54:40 UTC (rev 15297)
@@ -20,12 +20,12 @@
 	# in /usr/bin (via symlink) while others go to /usr/lib/seqan/bin (see README.Debian)
 	# mv $(CURDIR)/debian/seqan-apps/usr/bin/join $(CURDIR)/debian/seqan-apps/usr/bin/seqan-join
 	#
-	# Formerly binaries were installed into usr/lib/sequan/bin/
+	# Formerly binaries were installed into usr/lib/seqan/bin/
 	# and only some of them were made available in /usr/bin via dh_link
 	# Since there is no obvious reason for this neither is there any
 	# documentation that explains the motivation this is commented here.
 	#for APP in `find $(CURDIR)/obj*/apps -mindepth 1 -maxdepth 1 -executable -type f` ; do \
-	#  cp -a $$APP $(CURDIR)/debian/seqan-apps/usr/lib/sequan/bin/ ; done
+	#  cp -a $$APP $(CURDIR)/debian/seqan-apps/usr/lib/seqan/bin/ ; done
 	# ------------------------------------------------------------------
 	# Formerly readmes were named README.app.  It seems more consistent
 	# to keep upstream documentation layout which in addition contains

Modified: trunk/packages/seqan/trunk/debian/seqan-apps.install
===================================================================
--- trunk/packages/seqan/trunk/debian/seqan-apps.install	2013-11-28 10:52:40 UTC (rev 15296)
+++ trunk/packages/seqan/trunk/debian/seqan-apps.install	2013-11-28 10:54:40 UTC (rev 15297)
@@ -1,2 +1,2 @@
-usr/bin		usr/lib/sequan
+usr/bin		usr/lib/seqan
 usr/share/doc/*	usr/share/doc/seqan-apps

Modified: trunk/packages/seqan/trunk/debian/seqan-apps.links
===================================================================
--- trunk/packages/seqan/trunk/debian/seqan-apps.links	2013-11-28 10:52:40 UTC (rev 15296)
+++ trunk/packages/seqan/trunk/debian/seqan-apps.links	2013-11-28 10:54:40 UTC (rev 15297)
@@ -1,21 +1,21 @@
-usr/lib/sequan/bin/alf				usr/bin/alf
-usr/lib/sequan/bin/gustaf			usr/bin/gustaf
-usr/lib/sequan/bin/insegt			usr/bin/insegt
-usr/lib/sequan/bin/masai_indexer		usr/bin/masai_indexer
-usr/lib/sequan/bin/masai_mapper			usr/bin/masai_mapper
-usr/lib/sequan/bin/masai_output_pe		usr/bin/masai_output_pe
-usr/lib/sequan/bin/masai_output_se		usr/bin/masai_output_se
-usr/lib/sequan/bin/mason			usr/bin/mason
-usr/lib/sequan/bin/micro_razers			usr/bin/micro_razers
-usr/lib/sequan/bin/pair_align			usr/bin/pair_align
-usr/lib/sequan/bin/rabema_build_gold_standard	usr/bin/rabema_build_gold_standard
-usr/lib/sequan/bin/rabema_evaluate		usr/bin/rabema_evaluate
-usr/lib/sequan/bin/rabema_prepare_sam		usr/bin/rabema_prepare_sam
-usr/lib/sequan/bin/razers			usr/bin/razers
-usr/lib/sequan/bin/razers3			usr/bin/razers3
-usr/lib/sequan/bin/sak				usr/bin/sak
-usr/lib/sequan/bin/seqan_tcoffee		usr/bin/seqan_tcoffee
-usr/lib/sequan/bin/snp_store			usr/bin/snp_store
-usr/lib/sequan/bin/splazers			usr/bin/splazers
-usr/lib/sequan/bin/stellar			usr/bin/stellar
-usr/lib/sequan/bin/tree_recon			usr/bin/tree_recon
+usr/lib/seqan/bin/alf				usr/bin/alf
+usr/lib/seqan/bin/gustaf			usr/bin/gustaf
+usr/lib/seqan/bin/insegt			usr/bin/insegt
+usr/lib/seqan/bin/masai_indexer		usr/bin/masai_indexer
+usr/lib/seqan/bin/masai_mapper			usr/bin/masai_mapper
+usr/lib/seqan/bin/masai_output_pe		usr/bin/masai_output_pe
+usr/lib/seqan/bin/masai_output_se		usr/bin/masai_output_se
+usr/lib/seqan/bin/mason			usr/bin/mason
+usr/lib/seqan/bin/micro_razers			usr/bin/micro_razers
+usr/lib/seqan/bin/pair_align			usr/bin/pair_align
+usr/lib/seqan/bin/rabema_build_gold_standard	usr/bin/rabema_build_gold_standard
+usr/lib/seqan/bin/rabema_evaluate		usr/bin/rabema_evaluate
+usr/lib/seqan/bin/rabema_prepare_sam		usr/bin/rabema_prepare_sam
+usr/lib/seqan/bin/razers			usr/bin/razers
+usr/lib/seqan/bin/razers3			usr/bin/razers3
+usr/lib/seqan/bin/sak				usr/bin/sak
+usr/lib/seqan/bin/seqan_tcoffee		usr/bin/seqan_tcoffee
+usr/lib/seqan/bin/snp_store			usr/bin/snp_store
+usr/lib/seqan/bin/splazers			usr/bin/splazers
+usr/lib/seqan/bin/stellar			usr/bin/stellar
+usr/lib/seqan/bin/tree_recon			usr/bin/tree_recon